Multiple sequence alignment - TraesCS3B01G431900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G431900 chr3B 100.000 3405 0 0 1 3405 671013856 671017260 0.000000e+00 6288.0
1 TraesCS3B01G431900 chr3B 87.200 250 25 5 913 1161 670539465 670539708 9.310000e-71 278.0
2 TraesCS3B01G431900 chr3D 90.010 2072 108 40 1021 3059 508380589 508382594 0.000000e+00 2588.0
3 TraesCS3B01G431900 chr3D 91.977 349 26 2 3057 3405 508382650 508382996 3.950000e-134 488.0
4 TraesCS3B01G431900 chr3D 80.247 405 56 11 2548 2950 508381683 508382065 2.000000e-72 283.0
5 TraesCS3B01G431900 chr3D 81.481 243 37 8 510 748 366808278 366808516 3.470000e-45 193.0
6 TraesCS3B01G431900 chr3D 94.340 53 3 0 903 955 508380499 508380551 7.830000e-12 82.4
7 TraesCS3B01G431900 chr3D 88.889 54 6 0 401 454 50610121 50610174 2.190000e-07 67.6
8 TraesCS3B01G431900 chr3A 90.531 1901 111 33 891 2750 646124959 646126831 0.000000e+00 2449.0
9 TraesCS3B01G431900 chr3A 92.109 659 43 5 2748 3405 646126913 646127563 0.000000e+00 920.0
10 TraesCS3B01G431900 chr7B 78.849 591 82 29 329 894 411336752 411337324 3.230000e-95 359.0
11 TraesCS3B01G431900 chr5D 82.622 328 49 8 480 806 509893057 509892737 2.000000e-72 283.0
12 TraesCS3B01G431900 chr5B 82.622 328 49 4 480 805 640771082 640770761 2.000000e-72 283.0
13 TraesCS3B01G431900 chr5B 86.932 176 21 2 480 653 382316931 382316756 2.680000e-46 196.0
14 TraesCS3B01G431900 chr5B 89.333 75 8 0 401 475 382317035 382316961 1.010000e-15 95.3
15 TraesCS3B01G431900 chr5A 78.935 432 65 19 480 892 637529581 637529157 1.560000e-68 270.0
16 TraesCS3B01G431900 chr5A 90.244 164 16 0 480 643 427583348 427583511 7.400000e-52 215.0
17 TraesCS3B01G431900 chr2A 82.222 270 45 3 480 748 471820897 471820630 2.640000e-56 230.0
18 TraesCS3B01G431900 chr7A 80.822 292 48 8 480 766 28172354 28172066 4.420000e-54 222.0
19 TraesCS3B01G431900 chrUn 82.558 258 37 8 494 748 450918104 450918356 1.590000e-53 220.0
20 TraesCS3B01G431900 chr2B 82.558 258 37 8 494 748 166862861 166863113 1.590000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G431900 chr3B 671013856 671017260 3404 False 6288.00 6288 100.0000 1 3405 1 chr3B.!!$F2 3404
1 TraesCS3B01G431900 chr3D 508380499 508382996 2497 False 860.35 2588 89.1435 903 3405 4 chr3D.!!$F3 2502
2 TraesCS3B01G431900 chr3A 646124959 646127563 2604 False 1684.50 2449 91.3200 891 3405 2 chr3A.!!$F1 2514
3 TraesCS3B01G431900 chr7B 411336752 411337324 572 False 359.00 359 78.8490 329 894 1 chr7B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1009 0.044092 TCTAGGGCATTGGACTCCCA 59.956 55.0 0.0 0.0 42.52 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2950 3134 0.038251 CAAGGCGACTCAGCAGTGTA 60.038 55.0 0.0 0.0 42.68 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.415332 CCCGACACGACCCGTCAG 62.415 72.222 0.00 0.00 38.32 3.51
19 20 3.667282 CCGACACGACCCGTCAGT 61.667 66.667 0.00 0.00 38.32 3.41
20 21 2.333938 CGACACGACCCGTCAGTT 59.666 61.111 0.00 0.00 38.32 3.16
21 22 1.299620 CGACACGACCCGTCAGTTT 60.300 57.895 0.00 0.00 38.32 2.66
22 23 0.872881 CGACACGACCCGTCAGTTTT 60.873 55.000 0.00 0.00 38.32 2.43
23 24 1.292992 GACACGACCCGTCAGTTTTT 58.707 50.000 0.00 0.00 38.32 1.94
72 73 6.284891 CCCAATAGGCCAAATAATATGTGG 57.715 41.667 5.01 5.08 35.39 4.17
73 74 5.187576 CCCAATAGGCCAAATAATATGTGGG 59.812 44.000 11.24 7.18 35.22 4.61
78 79 4.243007 GCCAAATAATATGTGGGCTGAC 57.757 45.455 11.24 0.00 38.37 3.51
79 80 3.304659 GCCAAATAATATGTGGGCTGACG 60.305 47.826 11.24 0.00 38.37 4.35
80 81 3.253188 CCAAATAATATGTGGGCTGACGG 59.747 47.826 1.36 0.00 0.00 4.79
81 82 2.185004 ATAATATGTGGGCTGACGGC 57.815 50.000 0.00 0.00 40.90 5.68
82 83 1.128200 TAATATGTGGGCTGACGGCT 58.872 50.000 6.16 0.00 41.46 5.52
83 84 1.128200 AATATGTGGGCTGACGGCTA 58.872 50.000 6.16 0.00 41.46 3.93
84 85 0.681733 ATATGTGGGCTGACGGCTAG 59.318 55.000 6.16 0.00 41.46 3.42
85 86 0.396556 TATGTGGGCTGACGGCTAGA 60.397 55.000 6.16 0.00 41.46 2.43
86 87 1.050988 ATGTGGGCTGACGGCTAGAT 61.051 55.000 6.16 0.00 41.46 1.98
87 88 1.227380 GTGGGCTGACGGCTAGATG 60.227 63.158 6.16 0.00 41.46 2.90
88 89 1.685765 TGGGCTGACGGCTAGATGT 60.686 57.895 6.16 0.00 41.46 3.06
89 90 1.227380 GGGCTGACGGCTAGATGTG 60.227 63.158 6.16 0.00 41.46 3.21
90 91 1.884926 GGCTGACGGCTAGATGTGC 60.885 63.158 6.16 0.00 41.46 4.57
91 92 1.884926 GCTGACGGCTAGATGTGCC 60.885 63.158 0.00 0.00 46.42 5.01
97 98 3.207677 GGCTAGATGTGCCGATGAG 57.792 57.895 0.00 0.00 41.03 2.90
98 99 0.948141 GGCTAGATGTGCCGATGAGC 60.948 60.000 0.00 0.00 41.03 4.26
99 100 0.948141 GCTAGATGTGCCGATGAGCC 60.948 60.000 0.00 0.00 0.00 4.70
100 101 0.665670 CTAGATGTGCCGATGAGCCG 60.666 60.000 0.00 0.00 0.00 5.52
101 102 2.699576 TAGATGTGCCGATGAGCCGC 62.700 60.000 0.00 0.00 0.00 6.53
109 110 2.188469 GATGAGCCGCCCCGTTTA 59.812 61.111 0.00 0.00 0.00 2.01
110 111 1.450669 GATGAGCCGCCCCGTTTAA 60.451 57.895 0.00 0.00 0.00 1.52
111 112 0.818040 GATGAGCCGCCCCGTTTAAT 60.818 55.000 0.00 0.00 0.00 1.40
112 113 0.470766 ATGAGCCGCCCCGTTTAATA 59.529 50.000 0.00 0.00 0.00 0.98
113 114 0.470766 TGAGCCGCCCCGTTTAATAT 59.529 50.000 0.00 0.00 0.00 1.28
114 115 1.134037 TGAGCCGCCCCGTTTAATATT 60.134 47.619 0.00 0.00 0.00 1.28
115 116 2.104451 TGAGCCGCCCCGTTTAATATTA 59.896 45.455 0.00 0.00 0.00 0.98
116 117 2.740447 GAGCCGCCCCGTTTAATATTAG 59.260 50.000 0.00 0.00 0.00 1.73
117 118 2.105306 AGCCGCCCCGTTTAATATTAGT 59.895 45.455 0.00 0.00 0.00 2.24
118 119 2.224784 GCCGCCCCGTTTAATATTAGTG 59.775 50.000 0.00 0.00 0.00 2.74
119 120 3.469739 CCGCCCCGTTTAATATTAGTGT 58.530 45.455 0.00 0.00 0.00 3.55
120 121 3.495753 CCGCCCCGTTTAATATTAGTGTC 59.504 47.826 0.00 0.00 0.00 3.67
121 122 3.182972 CGCCCCGTTTAATATTAGTGTCG 59.817 47.826 0.00 0.80 0.00 4.35
122 123 4.122046 GCCCCGTTTAATATTAGTGTCGT 58.878 43.478 0.00 0.00 0.00 4.34
123 124 4.025480 GCCCCGTTTAATATTAGTGTCGTG 60.025 45.833 0.00 0.00 0.00 4.35
124 125 4.025480 CCCCGTTTAATATTAGTGTCGTGC 60.025 45.833 0.00 0.00 0.00 5.34
125 126 4.025480 CCCGTTTAATATTAGTGTCGTGCC 60.025 45.833 0.00 0.00 0.00 5.01
126 127 4.807304 CCGTTTAATATTAGTGTCGTGCCT 59.193 41.667 0.00 0.00 0.00 4.75
127 128 5.276678 CCGTTTAATATTAGTGTCGTGCCTG 60.277 44.000 0.00 0.00 0.00 4.85
128 129 5.276678 CGTTTAATATTAGTGTCGTGCCTGG 60.277 44.000 0.00 0.00 0.00 4.45
129 130 5.601583 TTAATATTAGTGTCGTGCCTGGA 57.398 39.130 0.00 0.00 0.00 3.86
130 131 2.953466 TATTAGTGTCGTGCCTGGAC 57.047 50.000 0.00 0.00 34.99 4.02
131 132 0.249398 ATTAGTGTCGTGCCTGGACC 59.751 55.000 0.00 0.00 33.46 4.46
132 133 1.116536 TTAGTGTCGTGCCTGGACCA 61.117 55.000 0.00 0.00 33.46 4.02
133 134 1.532604 TAGTGTCGTGCCTGGACCAG 61.533 60.000 15.15 15.15 33.46 4.00
141 142 3.820425 CCTGGACCAGGTAAGGCA 58.180 61.111 29.93 0.00 45.82 4.75
142 143 1.604378 CCTGGACCAGGTAAGGCAG 59.396 63.158 29.93 4.09 45.82 4.85
143 144 1.078143 CTGGACCAGGTAAGGCAGC 60.078 63.158 14.26 0.00 0.00 5.25
144 145 1.841302 CTGGACCAGGTAAGGCAGCA 61.841 60.000 14.26 0.00 0.00 4.41
145 146 1.207488 TGGACCAGGTAAGGCAGCAT 61.207 55.000 0.00 0.00 0.00 3.79
146 147 0.749454 GGACCAGGTAAGGCAGCATG 60.749 60.000 0.00 0.00 40.87 4.06
172 173 3.501396 CCCGCATGGCTTGTGTAG 58.499 61.111 12.23 0.96 33.82 2.74
173 174 1.377202 CCCGCATGGCTTGTGTAGT 60.377 57.895 12.23 0.00 33.82 2.73
174 175 0.960364 CCCGCATGGCTTGTGTAGTT 60.960 55.000 12.23 0.00 33.82 2.24
175 176 0.447801 CCGCATGGCTTGTGTAGTTC 59.552 55.000 12.23 0.00 33.82 3.01
176 177 0.095245 CGCATGGCTTGTGTAGTTCG 59.905 55.000 5.82 0.00 0.00 3.95
177 178 0.179189 GCATGGCTTGTGTAGTTCGC 60.179 55.000 2.12 0.00 0.00 4.70
178 179 0.095245 CATGGCTTGTGTAGTTCGCG 59.905 55.000 0.00 0.00 0.00 5.87
179 180 0.320421 ATGGCTTGTGTAGTTCGCGT 60.320 50.000 5.77 0.00 0.00 6.01
180 181 1.218875 TGGCTTGTGTAGTTCGCGTG 61.219 55.000 5.77 0.00 0.00 5.34
181 182 1.154654 GCTTGTGTAGTTCGCGTGC 60.155 57.895 5.77 0.00 0.00 5.34
182 183 1.491563 CTTGTGTAGTTCGCGTGCC 59.508 57.895 5.77 0.00 0.00 5.01
183 184 0.944311 CTTGTGTAGTTCGCGTGCCT 60.944 55.000 5.77 2.91 0.00 4.75
184 185 0.314618 TTGTGTAGTTCGCGTGCCTA 59.685 50.000 5.77 1.84 0.00 3.93
185 186 0.109458 TGTGTAGTTCGCGTGCCTAG 60.109 55.000 5.77 0.00 0.00 3.02
186 187 0.109412 GTGTAGTTCGCGTGCCTAGT 60.109 55.000 5.77 0.00 0.00 2.57
187 188 0.599558 TGTAGTTCGCGTGCCTAGTT 59.400 50.000 5.77 0.00 0.00 2.24
188 189 0.989890 GTAGTTCGCGTGCCTAGTTG 59.010 55.000 5.77 0.00 0.00 3.16
189 190 0.108992 TAGTTCGCGTGCCTAGTTGG 60.109 55.000 5.77 0.00 39.35 3.77
190 191 2.047655 TTCGCGTGCCTAGTTGGG 60.048 61.111 5.77 0.00 36.00 4.12
191 192 2.874664 TTCGCGTGCCTAGTTGGGT 61.875 57.895 5.77 0.00 36.00 4.51
192 193 2.775032 TTCGCGTGCCTAGTTGGGTC 62.775 60.000 5.77 0.00 36.00 4.46
193 194 2.813908 GCGTGCCTAGTTGGGTCG 60.814 66.667 0.00 0.00 36.00 4.79
194 195 2.654877 CGTGCCTAGTTGGGTCGT 59.345 61.111 0.00 0.00 36.00 4.34
195 196 1.736645 CGTGCCTAGTTGGGTCGTG 60.737 63.158 0.00 0.00 36.00 4.35
196 197 1.370064 GTGCCTAGTTGGGTCGTGT 59.630 57.895 0.00 0.00 36.00 4.49
197 198 0.669625 GTGCCTAGTTGGGTCGTGTC 60.670 60.000 0.00 0.00 36.00 3.67
198 199 1.445582 GCCTAGTTGGGTCGTGTCG 60.446 63.158 0.00 0.00 36.00 4.35
199 200 1.962144 CCTAGTTGGGTCGTGTCGT 59.038 57.895 0.00 0.00 0.00 4.34
200 201 0.388134 CCTAGTTGGGTCGTGTCGTG 60.388 60.000 0.00 0.00 0.00 4.35
201 202 1.007038 TAGTTGGGTCGTGTCGTGC 60.007 57.895 0.00 0.00 0.00 5.34
202 203 2.424705 TAGTTGGGTCGTGTCGTGCC 62.425 60.000 0.00 0.00 0.00 5.01
203 204 3.851128 TTGGGTCGTGTCGTGCCA 61.851 61.111 0.00 0.00 0.00 4.92
204 205 3.800685 TTGGGTCGTGTCGTGCCAG 62.801 63.158 0.00 0.00 0.00 4.85
205 206 3.986006 GGGTCGTGTCGTGCCAGA 61.986 66.667 0.00 0.00 0.00 3.86
206 207 2.733593 GGTCGTGTCGTGCCAGAC 60.734 66.667 2.13 2.13 41.30 3.51
207 208 2.733593 GTCGTGTCGTGCCAGACC 60.734 66.667 6.26 0.00 40.26 3.85
208 209 3.986006 TCGTGTCGTGCCAGACCC 61.986 66.667 6.26 0.00 40.26 4.46
210 211 4.295119 GTGTCGTGCCAGACCCGT 62.295 66.667 6.26 0.00 40.26 5.28
211 212 2.598099 TGTCGTGCCAGACCCGTA 60.598 61.111 6.26 0.00 40.26 4.02
212 213 1.980232 TGTCGTGCCAGACCCGTAT 60.980 57.895 6.26 0.00 40.26 3.06
213 214 0.680601 TGTCGTGCCAGACCCGTATA 60.681 55.000 6.26 0.00 40.26 1.47
214 215 0.457035 GTCGTGCCAGACCCGTATAA 59.543 55.000 0.00 0.00 35.22 0.98
215 216 0.457035 TCGTGCCAGACCCGTATAAC 59.543 55.000 0.00 0.00 0.00 1.89
216 217 0.529119 CGTGCCAGACCCGTATAACC 60.529 60.000 0.00 0.00 0.00 2.85
217 218 0.179065 GTGCCAGACCCGTATAACCC 60.179 60.000 0.00 0.00 0.00 4.11
218 219 0.618107 TGCCAGACCCGTATAACCCA 60.618 55.000 0.00 0.00 0.00 4.51
219 220 0.179065 GCCAGACCCGTATAACCCAC 60.179 60.000 0.00 0.00 0.00 4.61
220 221 1.196911 CCAGACCCGTATAACCCACA 58.803 55.000 0.00 0.00 0.00 4.17
221 222 1.134610 CCAGACCCGTATAACCCACAC 60.135 57.143 0.00 0.00 0.00 3.82
222 223 1.134610 CAGACCCGTATAACCCACACC 60.135 57.143 0.00 0.00 0.00 4.16
223 224 0.178767 GACCCGTATAACCCACACCC 59.821 60.000 0.00 0.00 0.00 4.61
224 225 0.547229 ACCCGTATAACCCACACCCA 60.547 55.000 0.00 0.00 0.00 4.51
225 226 0.179468 CCCGTATAACCCACACCCAG 59.821 60.000 0.00 0.00 0.00 4.45
226 227 0.463116 CCGTATAACCCACACCCAGC 60.463 60.000 0.00 0.00 0.00 4.85
227 228 0.463116 CGTATAACCCACACCCAGCC 60.463 60.000 0.00 0.00 0.00 4.85
228 229 0.621609 GTATAACCCACACCCAGCCA 59.378 55.000 0.00 0.00 0.00 4.75
229 230 0.916086 TATAACCCACACCCAGCCAG 59.084 55.000 0.00 0.00 0.00 4.85
230 231 1.863155 ATAACCCACACCCAGCCAGG 61.863 60.000 0.00 0.00 37.03 4.45
240 241 4.864334 CAGCCAGGCCGACCCATC 62.864 72.222 8.22 0.00 36.11 3.51
242 243 3.161450 GCCAGGCCGACCCATCTA 61.161 66.667 0.00 0.00 36.11 1.98
243 244 3.142393 CCAGGCCGACCCATCTAG 58.858 66.667 0.00 0.00 36.11 2.43
244 245 2.511452 CCAGGCCGACCCATCTAGG 61.511 68.421 0.00 0.00 36.11 3.02
245 246 1.762460 CAGGCCGACCCATCTAGGT 60.762 63.158 0.00 0.00 45.12 3.08
246 247 1.003051 AGGCCGACCCATCTAGGTT 59.997 57.895 0.00 0.00 41.42 3.50
247 248 0.620700 AGGCCGACCCATCTAGGTTT 60.621 55.000 0.00 0.00 41.42 3.27
248 249 0.463833 GGCCGACCCATCTAGGTTTG 60.464 60.000 0.00 0.00 41.42 2.93
249 250 0.539986 GCCGACCCATCTAGGTTTGA 59.460 55.000 0.00 0.00 41.42 2.69
250 251 1.141053 GCCGACCCATCTAGGTTTGAT 59.859 52.381 0.00 0.00 41.42 2.57
251 252 2.807108 GCCGACCCATCTAGGTTTGATC 60.807 54.545 0.00 0.00 41.42 2.92
252 253 2.224305 CCGACCCATCTAGGTTTGATCC 60.224 54.545 0.00 0.00 41.42 3.36
253 254 2.545952 CGACCCATCTAGGTTTGATCCG 60.546 54.545 0.00 0.00 41.42 4.18
254 255 1.768870 ACCCATCTAGGTTTGATCCGG 59.231 52.381 0.00 0.00 36.44 5.14
255 256 1.072331 CCCATCTAGGTTTGATCCGGG 59.928 57.143 0.00 0.00 34.66 5.73
256 257 2.047061 CCATCTAGGTTTGATCCGGGA 58.953 52.381 0.00 0.00 0.00 5.14
257 258 2.037772 CCATCTAGGTTTGATCCGGGAG 59.962 54.545 0.00 0.00 0.00 4.30
258 259 2.840640 TCTAGGTTTGATCCGGGAGA 57.159 50.000 0.00 0.00 0.00 3.71
259 260 3.330126 TCTAGGTTTGATCCGGGAGAT 57.670 47.619 0.00 0.00 38.17 2.75
260 261 2.965831 TCTAGGTTTGATCCGGGAGATG 59.034 50.000 0.00 0.00 34.42 2.90
261 262 0.181350 AGGTTTGATCCGGGAGATGC 59.819 55.000 0.00 0.00 34.42 3.91
262 263 0.181350 GGTTTGATCCGGGAGATGCT 59.819 55.000 0.00 0.00 34.42 3.79
263 264 1.303309 GTTTGATCCGGGAGATGCTG 58.697 55.000 0.00 0.00 34.42 4.41
264 265 0.464373 TTTGATCCGGGAGATGCTGC 60.464 55.000 0.00 0.00 34.42 5.25
265 266 1.340399 TTGATCCGGGAGATGCTGCT 61.340 55.000 0.00 0.00 34.42 4.24
266 267 0.469892 TGATCCGGGAGATGCTGCTA 60.470 55.000 0.00 0.00 34.42 3.49
267 268 0.681733 GATCCGGGAGATGCTGCTAA 59.318 55.000 0.00 0.00 34.42 3.09
268 269 1.277557 GATCCGGGAGATGCTGCTAAT 59.722 52.381 0.00 0.00 34.42 1.73
269 270 1.131638 TCCGGGAGATGCTGCTAATT 58.868 50.000 0.00 0.00 0.00 1.40
270 271 1.490490 TCCGGGAGATGCTGCTAATTT 59.510 47.619 0.00 0.00 0.00 1.82
271 272 2.092429 TCCGGGAGATGCTGCTAATTTT 60.092 45.455 0.00 0.00 0.00 1.82
272 273 2.033801 CCGGGAGATGCTGCTAATTTTG 59.966 50.000 0.00 0.00 0.00 2.44
273 274 2.542411 CGGGAGATGCTGCTAATTTTGC 60.542 50.000 0.00 0.00 0.00 3.68
274 275 2.428171 GGGAGATGCTGCTAATTTTGCA 59.572 45.455 0.00 5.44 39.83 4.08
276 277 4.442472 GGGAGATGCTGCTAATTTTGCATT 60.442 41.667 5.99 0.00 44.80 3.56
277 278 5.221303 GGGAGATGCTGCTAATTTTGCATTA 60.221 40.000 5.99 0.00 44.80 1.90
278 279 6.453092 GGAGATGCTGCTAATTTTGCATTAT 58.547 36.000 5.99 4.31 44.80 1.28
279 280 7.309377 GGGAGATGCTGCTAATTTTGCATTATA 60.309 37.037 5.99 0.00 44.80 0.98
280 281 7.754027 GGAGATGCTGCTAATTTTGCATTATAG 59.246 37.037 5.99 0.00 44.80 1.31
281 282 8.174733 AGATGCTGCTAATTTTGCATTATAGT 57.825 30.769 5.99 0.00 44.80 2.12
282 283 8.295288 AGATGCTGCTAATTTTGCATTATAGTC 58.705 33.333 5.99 1.06 44.80 2.59
283 284 6.738114 TGCTGCTAATTTTGCATTATAGTCC 58.262 36.000 5.99 0.00 39.86 3.85
284 285 6.547141 TGCTGCTAATTTTGCATTATAGTCCT 59.453 34.615 5.99 0.00 39.86 3.85
285 286 7.719193 TGCTGCTAATTTTGCATTATAGTCCTA 59.281 33.333 5.99 0.00 39.86 2.94
286 287 8.734386 GCTGCTAATTTTGCATTATAGTCCTAT 58.266 33.333 5.99 0.00 39.86 2.57
296 297 9.710900 TTGCATTATAGTCCTATATCAGTTGTG 57.289 33.333 0.00 0.00 0.00 3.33
297 298 9.088987 TGCATTATAGTCCTATATCAGTTGTGA 57.911 33.333 0.00 0.00 37.02 3.58
298 299 9.929180 GCATTATAGTCCTATATCAGTTGTGAA 57.071 33.333 0.00 0.00 35.88 3.18
322 323 6.920569 ACAACTTTGTTCGTTCTGAATAGT 57.079 33.333 0.00 0.00 38.47 2.12
323 324 6.945072 ACAACTTTGTTCGTTCTGAATAGTC 58.055 36.000 0.00 0.00 38.47 2.59
324 325 5.824243 ACTTTGTTCGTTCTGAATAGTCG 57.176 39.130 0.00 0.00 39.21 4.18
325 326 4.684703 ACTTTGTTCGTTCTGAATAGTCGG 59.315 41.667 0.00 0.00 39.21 4.79
326 327 3.226346 TGTTCGTTCTGAATAGTCGGG 57.774 47.619 0.00 0.00 39.21 5.14
327 328 2.094390 TGTTCGTTCTGAATAGTCGGGG 60.094 50.000 0.00 0.00 39.21 5.73
334 335 1.363080 GAATAGTCGGGGAGGCGTC 59.637 63.158 0.00 0.00 0.00 5.19
335 336 1.380785 AATAGTCGGGGAGGCGTCA 60.381 57.895 8.91 0.00 0.00 4.35
343 344 2.753043 GGAGGCGTCACCGAGGTA 60.753 66.667 8.91 0.00 46.52 3.08
347 348 1.217244 GGCGTCACCGAGGTATGTT 59.783 57.895 0.00 0.00 35.63 2.71
348 349 1.082117 GGCGTCACCGAGGTATGTTG 61.082 60.000 0.00 0.00 35.63 3.33
360 361 1.490490 GGTATGTTGGCATCTCCCTCA 59.510 52.381 0.00 0.00 36.58 3.86
390 391 1.697432 AGGATTGGTTGTGGTCTTCGA 59.303 47.619 0.00 0.00 0.00 3.71
391 392 2.076863 GGATTGGTTGTGGTCTTCGAG 58.923 52.381 0.00 0.00 0.00 4.04
392 393 1.464997 GATTGGTTGTGGTCTTCGAGC 59.535 52.381 0.00 0.00 0.00 5.03
393 394 0.878523 TTGGTTGTGGTCTTCGAGCG 60.879 55.000 0.00 0.00 32.15 5.03
394 395 1.006571 GGTTGTGGTCTTCGAGCGA 60.007 57.895 0.00 0.00 32.15 4.93
395 396 0.599204 GGTTGTGGTCTTCGAGCGAA 60.599 55.000 5.14 5.14 32.15 4.70
396 397 1.214367 GTTGTGGTCTTCGAGCGAAA 58.786 50.000 6.77 0.00 33.34 3.46
397 398 1.192534 GTTGTGGTCTTCGAGCGAAAG 59.807 52.381 6.77 2.04 33.34 2.62
409 410 4.157607 CGAAAGCCTGGTTGTGGT 57.842 55.556 0.00 0.00 0.00 4.16
410 411 1.949257 CGAAAGCCTGGTTGTGGTC 59.051 57.895 0.00 0.00 0.00 4.02
411 412 0.535102 CGAAAGCCTGGTTGTGGTCT 60.535 55.000 0.00 0.00 0.00 3.85
412 413 1.692411 GAAAGCCTGGTTGTGGTCTT 58.308 50.000 0.00 0.00 0.00 3.01
413 414 1.609072 GAAAGCCTGGTTGTGGTCTTC 59.391 52.381 0.00 0.00 0.00 2.87
414 415 0.535102 AAGCCTGGTTGTGGTCTTCG 60.535 55.000 0.00 0.00 0.00 3.79
415 416 1.070786 GCCTGGTTGTGGTCTTCGA 59.929 57.895 0.00 0.00 0.00 3.71
448 449 3.177600 CGGAGTTGAACCGGCATG 58.822 61.111 0.00 0.00 45.65 4.06
454 455 1.303970 TTGAACCGGCATGATGGCA 60.304 52.632 19.29 0.00 43.94 4.92
456 457 0.683828 TGAACCGGCATGATGGCATT 60.684 50.000 19.29 12.03 43.94 3.56
460 461 0.249155 CCGGCATGATGGCATTGTTC 60.249 55.000 19.29 0.00 43.94 3.18
466 467 4.381825 GGCATGATGGCATTGTTCTTAACA 60.382 41.667 14.60 0.00 43.14 2.41
478 479 7.518161 CATTGTTCTTAACATCGCTACTTTGA 58.482 34.615 0.00 0.00 41.79 2.69
486 512 4.489810 ACATCGCTACTTTGAGTCTTGAG 58.510 43.478 0.00 0.00 0.00 3.02
488 514 1.996191 CGCTACTTTGAGTCTTGAGGC 59.004 52.381 0.00 0.00 0.00 4.70
500 526 1.304381 TTGAGGCCCCATGTTGCTC 60.304 57.895 0.00 0.00 0.00 4.26
508 534 2.879756 GCCCCATGTTGCTCTACTTTCA 60.880 50.000 0.00 0.00 0.00 2.69
515 541 2.354109 TGCTCTACTTTCAGTGCTCG 57.646 50.000 0.00 0.00 36.30 5.03
516 542 0.995728 GCTCTACTTTCAGTGCTCGC 59.004 55.000 0.00 0.00 33.34 5.03
548 574 2.035961 GGTGATCTTCAGTGGCGCTATA 59.964 50.000 7.64 0.00 0.00 1.31
575 601 0.446616 TCATCGACGAGTCCAAGACG 59.553 55.000 3.01 0.00 37.67 4.18
578 604 1.168407 TCGACGAGTCCAAGACGGTT 61.168 55.000 0.00 0.00 37.67 4.44
590 616 2.165319 AGACGGTTGCTTTAGTGGAC 57.835 50.000 0.00 0.00 0.00 4.02
593 619 1.156736 CGGTTGCTTTAGTGGACTGG 58.843 55.000 0.00 0.00 0.00 4.00
614 640 1.473434 CCAAGTCCCGCCATCTACTTC 60.473 57.143 0.00 0.00 29.93 3.01
619 645 1.146263 CCGCCATCTACTTCCCACC 59.854 63.158 0.00 0.00 0.00 4.61
645 671 1.224315 CGGCATCAAGGGTGGATGA 59.776 57.895 6.57 0.00 43.80 2.92
658 684 0.460109 TGGATGATGCGTCGACAAGG 60.460 55.000 17.16 0.00 0.00 3.61
662 688 1.428448 TGATGCGTCGACAAGGAAAG 58.572 50.000 17.16 0.00 0.00 2.62
665 691 0.387929 TGCGTCGACAAGGAAAGTCT 59.612 50.000 17.16 0.00 33.89 3.24
669 695 3.427773 GCGTCGACAAGGAAAGTCTATCT 60.428 47.826 17.16 0.00 33.89 1.98
672 698 5.619309 CGTCGACAAGGAAAGTCTATCTGAA 60.619 44.000 17.16 0.00 33.89 3.02
678 704 6.656693 ACAAGGAAAGTCTATCTGAATTGGTG 59.343 38.462 0.00 0.00 32.91 4.17
679 705 6.380079 AGGAAAGTCTATCTGAATTGGTGT 57.620 37.500 0.00 0.00 32.91 4.16
681 707 5.163713 GGAAAGTCTATCTGAATTGGTGTGC 60.164 44.000 0.00 0.00 32.91 4.57
682 708 4.833478 AGTCTATCTGAATTGGTGTGCT 57.167 40.909 0.00 0.00 0.00 4.40
683 709 4.764172 AGTCTATCTGAATTGGTGTGCTC 58.236 43.478 0.00 0.00 0.00 4.26
685 711 5.046014 AGTCTATCTGAATTGGTGTGCTCTT 60.046 40.000 0.00 0.00 0.00 2.85
687 713 4.778534 ATCTGAATTGGTGTGCTCTTTG 57.221 40.909 0.00 0.00 0.00 2.77
696 722 1.973812 GTGCTCTTTGGAGGTGGCC 60.974 63.158 0.00 0.00 39.80 5.36
698 724 2.045926 CTCTTTGGAGGTGGCCGG 60.046 66.667 0.00 0.00 36.03 6.13
727 753 3.071459 GACGCGACAATGGTGCTCG 62.071 63.158 15.93 0.00 33.90 5.03
729 755 2.742372 GCGACAATGGTGCTCGGT 60.742 61.111 0.00 0.00 32.43 4.69
733 759 1.662876 CGACAATGGTGCTCGGTTTTG 60.663 52.381 0.00 0.00 0.00 2.44
734 760 0.673437 ACAATGGTGCTCGGTTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
744 770 2.222027 CTCGGTTTTGGACAAGCTCTT 58.778 47.619 0.00 0.00 0.00 2.85
745 771 2.618709 CTCGGTTTTGGACAAGCTCTTT 59.381 45.455 0.00 0.00 0.00 2.52
746 772 3.020984 TCGGTTTTGGACAAGCTCTTTT 58.979 40.909 0.00 0.00 0.00 2.27
747 773 3.445805 TCGGTTTTGGACAAGCTCTTTTT 59.554 39.130 0.00 0.00 0.00 1.94
773 799 6.255884 GCTTTTGCTTTGTAGTTGTGTTAC 57.744 37.500 0.00 0.00 43.35 2.50
775 801 6.196538 GCTTTTGCTTTGTAGTTGTGTTACTC 59.803 38.462 0.00 0.00 43.35 2.59
776 802 6.745159 TTTGCTTTGTAGTTGTGTTACTCA 57.255 33.333 0.00 0.00 0.00 3.41
784 810 3.805207 AGTTGTGTTACTCAAGGTGGTC 58.195 45.455 0.00 0.00 0.00 4.02
802 828 0.601558 TCTTGTCTTTCGGTCGGAGG 59.398 55.000 0.00 0.00 0.00 4.30
804 830 0.754472 TTGTCTTTCGGTCGGAGGTT 59.246 50.000 0.00 0.00 0.00 3.50
805 831 0.316204 TGTCTTTCGGTCGGAGGTTC 59.684 55.000 0.00 0.00 0.00 3.62
806 832 0.316204 GTCTTTCGGTCGGAGGTTCA 59.684 55.000 0.00 0.00 0.00 3.18
807 833 1.067071 GTCTTTCGGTCGGAGGTTCAT 60.067 52.381 0.00 0.00 0.00 2.57
808 834 2.165030 GTCTTTCGGTCGGAGGTTCATA 59.835 50.000 0.00 0.00 0.00 2.15
809 835 2.827322 TCTTTCGGTCGGAGGTTCATAA 59.173 45.455 0.00 0.00 0.00 1.90
810 836 3.449737 TCTTTCGGTCGGAGGTTCATAAT 59.550 43.478 0.00 0.00 0.00 1.28
816 863 5.593909 TCGGTCGGAGGTTCATAATAAGTTA 59.406 40.000 0.00 0.00 0.00 2.24
821 868 9.623350 GTCGGAGGTTCATAATAAGTTATAGTC 57.377 37.037 0.00 0.00 0.00 2.59
841 888 6.069684 AGTCTTCTTGCACTTGAAATTCTG 57.930 37.500 0.00 0.00 0.00 3.02
842 889 5.591877 AGTCTTCTTGCACTTGAAATTCTGT 59.408 36.000 0.00 0.00 0.00 3.41
849 896 7.498900 TCTTGCACTTGAAATTCTGTCTTCTAA 59.501 33.333 0.00 0.00 0.00 2.10
850 897 7.566760 TGCACTTGAAATTCTGTCTTCTAAA 57.433 32.000 0.00 0.00 0.00 1.85
851 898 7.642669 TGCACTTGAAATTCTGTCTTCTAAAG 58.357 34.615 0.00 0.00 0.00 1.85
852 899 7.498900 TGCACTTGAAATTCTGTCTTCTAAAGA 59.501 33.333 0.00 0.00 34.51 2.52
955 1007 1.139853 CAGTCTAGGGCATTGGACTCC 59.860 57.143 4.65 0.00 36.99 3.85
956 1008 0.470341 GTCTAGGGCATTGGACTCCC 59.530 60.000 0.00 0.00 40.36 4.30
957 1009 0.044092 TCTAGGGCATTGGACTCCCA 59.956 55.000 0.00 0.00 42.52 4.37
958 1010 0.181350 CTAGGGCATTGGACTCCCAC 59.819 60.000 0.00 0.00 43.41 4.61
965 1017 4.954118 TGGACTCCCACCCACGCT 62.954 66.667 0.00 0.00 37.58 5.07
966 1018 3.637273 GGACTCCCACCCACGCTT 61.637 66.667 0.00 0.00 0.00 4.68
994 1046 1.065928 CTCGAACGAATCCCCTCCG 59.934 63.158 0.00 0.00 0.00 4.63
1016 1069 1.566298 ATCCCAAGGTCAGAGCCACC 61.566 60.000 0.00 0.00 0.00 4.61
1041 1097 0.331278 ATCGCCAAACCCCTCAATCA 59.669 50.000 0.00 0.00 0.00 2.57
1052 1108 3.455910 ACCCCTCAATCATCTCAATTCGA 59.544 43.478 0.00 0.00 0.00 3.71
1112 1169 2.750657 CCAGCCACTGATCCCCTCC 61.751 68.421 0.00 0.00 32.44 4.30
1140 1197 1.153025 GAGTACCAAATCCGCCCCC 60.153 63.158 0.00 0.00 0.00 5.40
1182 1251 2.421388 CCCCGATCTACAAATTCCAGCA 60.421 50.000 0.00 0.00 0.00 4.41
1185 1254 3.557595 CCGATCTACAAATTCCAGCAGAC 59.442 47.826 0.00 0.00 0.00 3.51
1186 1255 4.183865 CGATCTACAAATTCCAGCAGACA 58.816 43.478 0.00 0.00 0.00 3.41
1187 1256 4.269603 CGATCTACAAATTCCAGCAGACAG 59.730 45.833 0.00 0.00 0.00 3.51
1188 1257 4.890158 TCTACAAATTCCAGCAGACAGA 57.110 40.909 0.00 0.00 0.00 3.41
1189 1258 4.825422 TCTACAAATTCCAGCAGACAGAG 58.175 43.478 0.00 0.00 0.00 3.35
1191 1260 2.156917 CAAATTCCAGCAGACAGAGCA 58.843 47.619 0.00 0.00 0.00 4.26
1193 1262 2.328819 ATTCCAGCAGACAGAGCATC 57.671 50.000 0.00 0.00 0.00 3.91
1194 1263 0.108472 TTCCAGCAGACAGAGCATCG 60.108 55.000 0.00 0.00 42.67 3.84
1195 1264 1.217511 CCAGCAGACAGAGCATCGT 59.782 57.895 0.00 0.00 42.67 3.73
1196 1265 0.805322 CCAGCAGACAGAGCATCGTC 60.805 60.000 0.00 0.00 42.67 4.20
1211 1280 0.179207 TCGTCGATCTTCGTCAACCG 60.179 55.000 0.00 0.00 41.35 4.44
1212 1281 0.179207 CGTCGATCTTCGTCAACCGA 60.179 55.000 0.00 0.00 45.66 4.69
1213 1282 1.531264 CGTCGATCTTCGTCAACCGAT 60.531 52.381 0.00 0.00 46.75 4.18
1214 1283 2.110226 GTCGATCTTCGTCAACCGATC 58.890 52.381 0.00 0.00 46.75 3.69
1215 1284 1.113253 CGATCTTCGTCAACCGATCG 58.887 55.000 8.51 8.51 46.75 3.69
1216 1285 2.470196 GATCTTCGTCAACCGATCGA 57.530 50.000 18.66 0.00 46.75 3.59
1222 1291 3.833645 TCAACCGATCGAGGGCCG 61.834 66.667 18.66 0.27 40.25 6.13
1229 1298 1.958205 GATCGAGGGCCGCAATCTG 60.958 63.158 8.33 0.00 38.37 2.90
1233 1302 4.431131 AGGGCCGCAATCTGGGTG 62.431 66.667 0.00 0.00 0.00 4.61
1234 1303 4.424711 GGGCCGCAATCTGGGTGA 62.425 66.667 0.00 0.00 0.00 4.02
1235 1304 2.361104 GGCCGCAATCTGGGTGAA 60.361 61.111 0.00 0.00 0.00 3.18
1254 1323 1.227002 GAAGAAGCTAGGTCCGGCG 60.227 63.158 0.00 0.00 0.00 6.46
1255 1324 1.664321 GAAGAAGCTAGGTCCGGCGA 61.664 60.000 9.30 0.00 0.00 5.54
1274 1347 1.351080 ACATGGGGAGGCCTCTGATG 61.351 60.000 31.36 27.65 0.00 3.07
1284 1357 3.417101 AGGCCTCTGATGTACGAGATAG 58.583 50.000 0.00 0.00 0.00 2.08
1685 1758 0.896479 TCGTCTTCGGGTGGATGACA 60.896 55.000 9.46 0.00 45.43 3.58
1688 1761 2.711542 GTCTTCGGGTGGATGACAATT 58.288 47.619 5.25 0.00 44.85 2.32
1697 1770 1.353103 GATGACAATTCTGGCCGCG 59.647 57.895 0.00 0.00 0.00 6.46
1727 1800 1.416401 TCGTCCAAGCTCAACCTCTTT 59.584 47.619 0.00 0.00 0.00 2.52
1763 1836 2.045926 ATCAGCTTCGCGCCCTTT 60.046 55.556 0.00 0.00 40.39 3.11
1766 1839 2.281484 AGCTTCGCGCCCTTTGAA 60.281 55.556 0.00 0.00 40.39 2.69
1781 1854 4.319046 CCCTTTGAATCGCTCATATTCACG 60.319 45.833 0.00 0.00 41.73 4.35
1802 1875 1.076777 AATCATGGTTCCCCAGGCG 60.077 57.895 0.00 0.00 46.15 5.52
1823 1896 1.450312 CTTCATCGGCCACCTGTCC 60.450 63.158 2.24 0.00 0.00 4.02
1838 1911 1.227556 GTCCGGGATCATCGTTGGG 60.228 63.158 0.00 0.00 0.00 4.12
1844 1917 1.269621 GGGATCATCGTTGGGTACTCG 60.270 57.143 0.00 0.00 0.00 4.18
1847 1920 3.566523 GATCATCGTTGGGTACTCGATC 58.433 50.000 10.74 2.76 41.35 3.69
1886 1959 2.441750 TGGGATGAATAACTACTGGGCC 59.558 50.000 0.00 0.00 0.00 5.80
1893 1966 1.563924 TAACTACTGGGCCGTCACAT 58.436 50.000 0.00 0.00 0.00 3.21
1898 1971 1.973281 CTGGGCCGTCACATTGCTT 60.973 57.895 0.00 0.00 0.00 3.91
1907 1980 1.895131 GTCACATTGCTTGGGTGGATT 59.105 47.619 0.00 0.00 33.45 3.01
1992 2065 1.673808 GCCAGTTACGGATCCCTCGT 61.674 60.000 6.06 3.27 43.64 4.18
1997 2070 1.259142 TTACGGATCCCTCGTTGCCA 61.259 55.000 6.06 0.00 41.38 4.92
2049 2122 2.176364 AGGGCTCTGCAAATGGATATGT 59.824 45.455 0.00 0.00 0.00 2.29
2069 2142 3.068881 CCCGGAAGAGGAGTTGCA 58.931 61.111 0.73 0.00 0.00 4.08
2087 2160 5.183904 AGTTGCAGATTTTGTATGACCTTCC 59.816 40.000 0.00 0.00 0.00 3.46
2088 2161 4.922206 TGCAGATTTTGTATGACCTTCCT 58.078 39.130 0.00 0.00 0.00 3.36
2111 2184 0.952984 GTGTGGAAGAGCTGCTCACC 60.953 60.000 29.49 28.11 34.75 4.02
2169 2242 4.092116 TGTATCATGTTGACACAACCCA 57.908 40.909 11.25 0.00 29.84 4.51
2192 2265 9.231297 CCCAATACTTTCAGTTTTGAGAATCTA 57.769 33.333 8.22 0.00 38.77 1.98
2299 2381 8.001881 TCCTTTTTGTGAAGTAGCATGTAAAA 57.998 30.769 0.00 0.00 0.00 1.52
2323 2405 6.131961 AGAATGGGAATCATGTAGGAAAAGG 58.868 40.000 0.00 0.00 35.99 3.11
2333 2415 6.542821 TCATGTAGGAAAAGGACAACTGAAT 58.457 36.000 0.00 0.00 0.00 2.57
2334 2416 6.430925 TCATGTAGGAAAAGGACAACTGAATG 59.569 38.462 0.00 0.00 0.00 2.67
2461 2547 8.450964 ACTGGTATGTTCATTCTATTTGTTTCG 58.549 33.333 0.00 0.00 0.00 3.46
2481 2567 3.624410 TCGAAGTTCGGATAGTGAATCGA 59.376 43.478 24.18 0.00 40.88 3.59
2531 2617 0.400975 TGCCAGCCATTGCCATTTTT 59.599 45.000 0.00 0.00 38.69 1.94
2551 2637 5.446143 TTTGTGTTTTGAAGTGCGGATAT 57.554 34.783 0.00 0.00 0.00 1.63
2564 2651 4.759693 AGTGCGGATATGTTTTGTTTCAGA 59.240 37.500 0.00 0.00 0.00 3.27
2567 2654 6.586082 GTGCGGATATGTTTTGTTTCAGAATT 59.414 34.615 0.00 0.00 0.00 2.17
2568 2655 7.753132 GTGCGGATATGTTTTGTTTCAGAATTA 59.247 33.333 0.00 0.00 0.00 1.40
2614 2702 8.915654 CAATGCTATACTTTCAGTTTTGGAAAC 58.084 33.333 0.00 0.00 31.44 2.78
2662 2750 3.766591 TCTCAGATGTGAAGGGAGTTCTC 59.233 47.826 0.00 0.00 35.99 2.87
2676 2764 3.506844 GGAGTTCTCTTACCTCGACTTGT 59.493 47.826 0.00 0.00 0.00 3.16
2706 2794 3.780804 TTCATTTCGAACAGAAGGGGA 57.219 42.857 0.00 0.00 40.40 4.81
2717 2805 5.066505 CGAACAGAAGGGGATCTTTTTATGG 59.933 44.000 0.00 0.00 35.50 2.74
2816 3000 8.172352 TCTATTCTAATCTGTAGACTCAAGCC 57.828 38.462 0.00 0.00 0.00 4.35
2822 3006 8.928448 TCTAATCTGTAGACTCAAGCCATAAAT 58.072 33.333 0.00 0.00 0.00 1.40
2823 3007 9.553064 CTAATCTGTAGACTCAAGCCATAAATT 57.447 33.333 0.00 0.00 0.00 1.82
2829 3013 9.330063 TGTAGACTCAAGCCATAAATTAAGATG 57.670 33.333 0.00 0.00 0.00 2.90
2898 3082 5.869579 TGCTCCTTCTATTTGTCTTGAAGT 58.130 37.500 0.00 0.00 35.47 3.01
2901 3085 6.035112 GCTCCTTCTATTTGTCTTGAAGTACG 59.965 42.308 0.00 0.00 35.47 3.67
2920 3104 2.162208 ACGCATAGTGAATTGTTGCCAG 59.838 45.455 0.00 0.00 0.00 4.85
2921 3105 2.162208 CGCATAGTGAATTGTTGCCAGT 59.838 45.455 0.00 0.00 0.00 4.00
2927 3111 2.884639 GTGAATTGTTGCCAGTACAGGT 59.115 45.455 6.14 0.00 0.00 4.00
2933 3117 4.465632 TGTTGCCAGTACAGGTATACAG 57.534 45.455 6.14 0.00 0.00 2.74
2958 3142 2.224621 ACTTGTTCTGCCATACACTGCT 60.225 45.455 0.00 0.00 0.00 4.24
2964 3148 0.108662 TGCCATACACTGCTGAGTCG 60.109 55.000 0.00 0.00 0.00 4.18
2997 3181 4.418013 TTGCATCAATGTGTTTAGACGG 57.582 40.909 0.00 0.00 0.00 4.79
3048 3232 7.885297 TCAATTAATCAAGGAAGTTCCAAGTG 58.115 34.615 23.87 16.02 39.61 3.16
3100 3342 8.765219 TGAAAGAAACGCTAATATATGCTTCTC 58.235 33.333 0.00 0.00 0.00 2.87
3130 3373 4.616835 GCATGCTTTCTTTTCACTACCTGG 60.617 45.833 11.37 0.00 0.00 4.45
3222 3465 1.789464 GTGAGAACTCGTCAGCAACAG 59.211 52.381 0.00 0.00 0.00 3.16
3226 3469 1.502163 AACTCGTCAGCAACAGCAGC 61.502 55.000 0.00 0.00 0.00 5.25
3294 3537 6.770785 AGCAAAGGTAATGTTCTGAGTTTACA 59.229 34.615 0.00 0.00 0.00 2.41
3330 3573 2.029739 CACCGACCATGTACACTACACA 60.030 50.000 0.00 0.00 42.23 3.72
3340 3583 4.045783 TGTACACTACACACACAACATCG 58.954 43.478 0.00 0.00 32.89 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.415332 CTGACGGGTCGTGTCGGG 62.415 72.222 0.00 0.00 41.37 5.14
2 3 2.688526 AAACTGACGGGTCGTGTCGG 62.689 60.000 0.00 0.62 46.03 4.79
3 4 0.872881 AAAACTGACGGGTCGTGTCG 60.873 55.000 0.00 0.00 41.37 4.35
4 5 1.292992 AAAAACTGACGGGTCGTGTC 58.707 50.000 0.00 0.00 41.37 3.67
5 6 3.464207 AAAAACTGACGGGTCGTGT 57.536 47.368 0.00 0.00 41.37 4.49
49 50 5.187576 CCCACATATTATTTGGCCTATTGGG 59.812 44.000 3.32 6.75 38.36 4.12
50 51 5.337491 GCCCACATATTATTTGGCCTATTGG 60.337 44.000 3.32 1.27 32.74 3.16
51 52 5.481473 AGCCCACATATTATTTGGCCTATTG 59.519 40.000 3.32 0.00 39.72 1.90
52 53 5.481473 CAGCCCACATATTATTTGGCCTATT 59.519 40.000 3.32 0.00 39.72 1.73
53 54 5.018809 CAGCCCACATATTATTTGGCCTAT 58.981 41.667 3.32 0.00 39.72 2.57
54 55 4.105537 TCAGCCCACATATTATTTGGCCTA 59.894 41.667 3.32 0.00 39.72 3.93
55 56 3.117169 TCAGCCCACATATTATTTGGCCT 60.117 43.478 3.32 0.00 39.72 5.19
56 57 3.005791 GTCAGCCCACATATTATTTGGCC 59.994 47.826 0.00 0.00 39.72 5.36
57 58 3.304659 CGTCAGCCCACATATTATTTGGC 60.305 47.826 3.67 0.00 39.17 4.52
58 59 3.253188 CCGTCAGCCCACATATTATTTGG 59.747 47.826 2.36 2.36 0.00 3.28
59 60 3.304659 GCCGTCAGCCCACATATTATTTG 60.305 47.826 0.00 0.00 34.35 2.32
60 61 2.884639 GCCGTCAGCCCACATATTATTT 59.115 45.455 0.00 0.00 34.35 1.40
61 62 2.106511 AGCCGTCAGCCCACATATTATT 59.893 45.455 0.00 0.00 45.47 1.40
62 63 1.699634 AGCCGTCAGCCCACATATTAT 59.300 47.619 0.00 0.00 45.47 1.28
63 64 1.128200 AGCCGTCAGCCCACATATTA 58.872 50.000 0.00 0.00 45.47 0.98
64 65 1.070758 CTAGCCGTCAGCCCACATATT 59.929 52.381 0.00 0.00 45.47 1.28
65 66 0.681733 CTAGCCGTCAGCCCACATAT 59.318 55.000 0.00 0.00 45.47 1.78
66 67 0.396556 TCTAGCCGTCAGCCCACATA 60.397 55.000 0.00 0.00 45.47 2.29
67 68 1.050988 ATCTAGCCGTCAGCCCACAT 61.051 55.000 0.00 0.00 45.47 3.21
68 69 1.685765 ATCTAGCCGTCAGCCCACA 60.686 57.895 0.00 0.00 45.47 4.17
69 70 1.227380 CATCTAGCCGTCAGCCCAC 60.227 63.158 0.00 0.00 45.47 4.61
70 71 1.685765 ACATCTAGCCGTCAGCCCA 60.686 57.895 0.00 0.00 45.47 5.36
71 72 1.227380 CACATCTAGCCGTCAGCCC 60.227 63.158 0.00 0.00 45.47 5.19
72 73 1.884926 GCACATCTAGCCGTCAGCC 60.885 63.158 0.00 0.00 45.47 4.85
73 74 1.884926 GGCACATCTAGCCGTCAGC 60.885 63.158 0.00 0.00 43.15 4.26
74 75 4.427394 GGCACATCTAGCCGTCAG 57.573 61.111 0.00 0.00 43.15 3.51
80 81 0.948141 GGCTCATCGGCACATCTAGC 60.948 60.000 0.00 0.00 38.25 3.42
81 82 0.665670 CGGCTCATCGGCACATCTAG 60.666 60.000 0.00 0.00 38.27 2.43
82 83 1.363807 CGGCTCATCGGCACATCTA 59.636 57.895 0.00 0.00 38.27 1.98
83 84 2.107750 CGGCTCATCGGCACATCT 59.892 61.111 0.00 0.00 38.27 2.90
84 85 3.643978 GCGGCTCATCGGCACATC 61.644 66.667 0.00 0.00 40.34 3.06
91 92 3.726595 TAAACGGGGCGGCTCATCG 62.727 63.158 10.45 10.95 0.00 3.84
92 93 0.818040 ATTAAACGGGGCGGCTCATC 60.818 55.000 10.45 0.00 0.00 2.92
93 94 0.470766 TATTAAACGGGGCGGCTCAT 59.529 50.000 10.45 0.00 0.00 2.90
94 95 0.470766 ATATTAAACGGGGCGGCTCA 59.529 50.000 10.45 0.00 0.00 4.26
95 96 1.601166 AATATTAAACGGGGCGGCTC 58.399 50.000 9.56 2.79 0.00 4.70
96 97 2.105306 ACTAATATTAAACGGGGCGGCT 59.895 45.455 9.56 0.00 0.00 5.52
97 98 2.224784 CACTAATATTAAACGGGGCGGC 59.775 50.000 0.00 0.00 0.00 6.53
98 99 3.469739 ACACTAATATTAAACGGGGCGG 58.530 45.455 0.00 0.00 0.00 6.13
99 100 3.182972 CGACACTAATATTAAACGGGGCG 59.817 47.826 0.00 0.00 0.00 6.13
100 101 4.025480 CACGACACTAATATTAAACGGGGC 60.025 45.833 0.00 0.00 0.00 5.80
101 102 4.025480 GCACGACACTAATATTAAACGGGG 60.025 45.833 11.50 0.00 0.00 5.73
102 103 4.025480 GGCACGACACTAATATTAAACGGG 60.025 45.833 0.00 3.15 0.00 5.28
103 104 4.807304 AGGCACGACACTAATATTAAACGG 59.193 41.667 0.00 0.00 0.00 4.44
104 105 5.276678 CCAGGCACGACACTAATATTAAACG 60.277 44.000 0.00 3.42 0.00 3.60
105 106 5.813672 TCCAGGCACGACACTAATATTAAAC 59.186 40.000 0.00 0.00 0.00 2.01
106 107 5.813672 GTCCAGGCACGACACTAATATTAAA 59.186 40.000 0.00 0.00 0.00 1.52
107 108 5.353938 GTCCAGGCACGACACTAATATTAA 58.646 41.667 0.00 0.00 0.00 1.40
108 109 4.202182 GGTCCAGGCACGACACTAATATTA 60.202 45.833 6.35 0.00 31.55 0.98
109 110 3.431766 GGTCCAGGCACGACACTAATATT 60.432 47.826 6.35 0.00 31.55 1.28
110 111 2.102588 GGTCCAGGCACGACACTAATAT 59.897 50.000 6.35 0.00 31.55 1.28
111 112 1.479323 GGTCCAGGCACGACACTAATA 59.521 52.381 6.35 0.00 31.55 0.98
112 113 0.249398 GGTCCAGGCACGACACTAAT 59.751 55.000 6.35 0.00 31.55 1.73
113 114 1.116536 TGGTCCAGGCACGACACTAA 61.117 55.000 6.35 0.00 31.55 2.24
114 115 1.532078 TGGTCCAGGCACGACACTA 60.532 57.895 6.35 0.00 31.55 2.74
115 116 2.842462 TGGTCCAGGCACGACACT 60.842 61.111 6.35 0.00 31.55 3.55
116 117 2.357517 CTGGTCCAGGCACGACAC 60.358 66.667 11.46 0.00 31.55 3.67
117 118 3.625897 CCTGGTCCAGGCACGACA 61.626 66.667 25.31 0.00 45.13 4.35
125 126 1.078143 GCTGCCTTACCTGGTCCAG 60.078 63.158 12.40 12.40 0.00 3.86
126 127 1.207488 ATGCTGCCTTACCTGGTCCA 61.207 55.000 0.63 0.00 0.00 4.02
127 128 0.749454 CATGCTGCCTTACCTGGTCC 60.749 60.000 0.63 0.00 0.00 4.46
128 129 1.379642 GCATGCTGCCTTACCTGGTC 61.380 60.000 11.37 0.00 37.42 4.02
129 130 1.379044 GCATGCTGCCTTACCTGGT 60.379 57.895 11.37 4.05 37.42 4.00
130 131 0.754217 ATGCATGCTGCCTTACCTGG 60.754 55.000 20.33 0.00 44.23 4.45
131 132 0.384309 CATGCATGCTGCCTTACCTG 59.616 55.000 20.33 0.00 44.23 4.00
132 133 2.803203 CATGCATGCTGCCTTACCT 58.197 52.632 20.33 0.00 44.23 3.08
155 156 0.960364 AACTACACAAGCCATGCGGG 60.960 55.000 0.00 0.00 40.85 6.13
156 157 0.447801 GAACTACACAAGCCATGCGG 59.552 55.000 0.00 0.00 0.00 5.69
157 158 0.095245 CGAACTACACAAGCCATGCG 59.905 55.000 0.00 0.00 0.00 4.73
158 159 0.179189 GCGAACTACACAAGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
159 160 0.095245 CGCGAACTACACAAGCCATG 59.905 55.000 0.00 0.00 0.00 3.66
160 161 0.320421 ACGCGAACTACACAAGCCAT 60.320 50.000 15.93 0.00 0.00 4.40
161 162 1.068417 ACGCGAACTACACAAGCCA 59.932 52.632 15.93 0.00 0.00 4.75
162 163 1.491563 CACGCGAACTACACAAGCC 59.508 57.895 15.93 0.00 0.00 4.35
163 164 1.154654 GCACGCGAACTACACAAGC 60.155 57.895 15.93 0.00 0.00 4.01
164 165 0.944311 AGGCACGCGAACTACACAAG 60.944 55.000 15.93 0.00 0.00 3.16
165 166 0.314618 TAGGCACGCGAACTACACAA 59.685 50.000 15.93 0.00 0.00 3.33
166 167 0.109458 CTAGGCACGCGAACTACACA 60.109 55.000 15.93 0.00 0.00 3.72
167 168 0.109412 ACTAGGCACGCGAACTACAC 60.109 55.000 15.93 0.00 0.00 2.90
168 169 0.599558 AACTAGGCACGCGAACTACA 59.400 50.000 15.93 0.00 0.00 2.74
169 170 0.989890 CAACTAGGCACGCGAACTAC 59.010 55.000 15.93 0.00 0.00 2.73
170 171 0.108992 CCAACTAGGCACGCGAACTA 60.109 55.000 15.93 10.95 0.00 2.24
171 172 1.374252 CCAACTAGGCACGCGAACT 60.374 57.895 15.93 10.30 0.00 3.01
172 173 2.388232 CCCAACTAGGCACGCGAAC 61.388 63.158 15.93 3.29 35.39 3.95
173 174 2.047655 CCCAACTAGGCACGCGAA 60.048 61.111 15.93 0.00 35.39 4.70
174 175 3.291101 GACCCAACTAGGCACGCGA 62.291 63.158 15.93 0.00 35.39 5.87
175 176 2.813908 GACCCAACTAGGCACGCG 60.814 66.667 3.53 3.53 35.39 6.01
176 177 2.813908 CGACCCAACTAGGCACGC 60.814 66.667 0.00 0.00 35.39 5.34
177 178 1.736645 CACGACCCAACTAGGCACG 60.737 63.158 0.00 0.00 39.23 5.34
178 179 0.669625 GACACGACCCAACTAGGCAC 60.670 60.000 0.00 0.00 35.39 5.01
179 180 1.669440 GACACGACCCAACTAGGCA 59.331 57.895 0.00 0.00 35.39 4.75
180 181 1.445582 CGACACGACCCAACTAGGC 60.446 63.158 0.00 0.00 35.39 3.93
181 182 0.388134 CACGACACGACCCAACTAGG 60.388 60.000 0.00 0.00 37.03 3.02
182 183 1.007336 GCACGACACGACCCAACTAG 61.007 60.000 0.00 0.00 0.00 2.57
183 184 1.007038 GCACGACACGACCCAACTA 60.007 57.895 0.00 0.00 0.00 2.24
184 185 2.279918 GCACGACACGACCCAACT 60.280 61.111 0.00 0.00 0.00 3.16
185 186 3.343421 GGCACGACACGACCCAAC 61.343 66.667 0.00 0.00 0.00 3.77
186 187 3.800685 CTGGCACGACACGACCCAA 62.801 63.158 0.00 0.00 32.72 4.12
187 188 4.293648 CTGGCACGACACGACCCA 62.294 66.667 0.00 0.00 0.00 4.51
188 189 3.986006 TCTGGCACGACACGACCC 61.986 66.667 0.00 0.00 0.00 4.46
189 190 2.733593 GTCTGGCACGACACGACC 60.734 66.667 10.81 0.00 33.49 4.79
190 191 2.733593 GGTCTGGCACGACACGAC 60.734 66.667 15.59 6.59 34.57 4.34
191 192 3.986006 GGGTCTGGCACGACACGA 61.986 66.667 15.59 0.00 34.57 4.35
198 199 0.179065 GGGTTATACGGGTCTGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
199 200 0.618107 TGGGTTATACGGGTCTGGCA 60.618 55.000 0.00 0.00 0.00 4.92
200 201 0.179065 GTGGGTTATACGGGTCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
201 202 1.134610 GTGTGGGTTATACGGGTCTGG 60.135 57.143 0.00 0.00 0.00 3.86
202 203 1.134610 GGTGTGGGTTATACGGGTCTG 60.135 57.143 0.00 0.00 0.00 3.51
203 204 1.197812 GGTGTGGGTTATACGGGTCT 58.802 55.000 0.00 0.00 0.00 3.85
204 205 0.178767 GGGTGTGGGTTATACGGGTC 59.821 60.000 0.00 0.00 0.00 4.46
205 206 0.547229 TGGGTGTGGGTTATACGGGT 60.547 55.000 0.00 0.00 0.00 5.28
206 207 0.179468 CTGGGTGTGGGTTATACGGG 59.821 60.000 0.00 0.00 0.00 5.28
207 208 0.463116 GCTGGGTGTGGGTTATACGG 60.463 60.000 0.00 0.00 0.00 4.02
208 209 0.463116 GGCTGGGTGTGGGTTATACG 60.463 60.000 0.00 0.00 0.00 3.06
209 210 0.621609 TGGCTGGGTGTGGGTTATAC 59.378 55.000 0.00 0.00 0.00 1.47
210 211 0.916086 CTGGCTGGGTGTGGGTTATA 59.084 55.000 0.00 0.00 0.00 0.98
211 212 1.691219 CTGGCTGGGTGTGGGTTAT 59.309 57.895 0.00 0.00 0.00 1.89
212 213 2.534396 CCTGGCTGGGTGTGGGTTA 61.534 63.158 1.84 0.00 0.00 2.85
213 214 3.902112 CCTGGCTGGGTGTGGGTT 61.902 66.667 1.84 0.00 0.00 4.11
223 224 4.864334 GATGGGTCGGCCTGGCTG 62.864 72.222 21.69 21.69 36.06 4.85
224 225 3.696518 TAGATGGGTCGGCCTGGCT 62.697 63.158 19.68 2.94 34.45 4.75
225 226 3.161450 TAGATGGGTCGGCCTGGC 61.161 66.667 11.05 11.05 34.45 4.85
226 227 2.511452 CCTAGATGGGTCGGCCTGG 61.511 68.421 5.77 0.00 34.45 4.45
227 228 1.338136 AACCTAGATGGGTCGGCCTG 61.338 60.000 5.77 0.00 38.87 4.85
228 229 0.620700 AAACCTAGATGGGTCGGCCT 60.621 55.000 5.77 0.00 38.87 5.19
229 230 0.463833 CAAACCTAGATGGGTCGGCC 60.464 60.000 0.00 0.00 38.87 6.13
230 231 0.539986 TCAAACCTAGATGGGTCGGC 59.460 55.000 0.00 0.00 38.87 5.54
231 232 2.224305 GGATCAAACCTAGATGGGTCGG 60.224 54.545 0.00 0.00 38.87 4.79
232 233 2.545952 CGGATCAAACCTAGATGGGTCG 60.546 54.545 0.00 0.00 38.87 4.79
233 234 2.224305 CCGGATCAAACCTAGATGGGTC 60.224 54.545 0.00 0.00 38.87 4.46
234 235 1.768870 CCGGATCAAACCTAGATGGGT 59.231 52.381 0.00 0.00 42.05 4.51
235 236 1.072331 CCCGGATCAAACCTAGATGGG 59.928 57.143 0.73 0.00 41.11 4.00
236 237 2.037772 CTCCCGGATCAAACCTAGATGG 59.962 54.545 0.73 0.00 42.93 3.51
237 238 2.965831 TCTCCCGGATCAAACCTAGATG 59.034 50.000 0.73 0.00 0.00 2.90
238 239 3.330126 TCTCCCGGATCAAACCTAGAT 57.670 47.619 0.73 0.00 0.00 1.98
239 240 2.840640 TCTCCCGGATCAAACCTAGA 57.159 50.000 0.73 0.00 0.00 2.43
240 241 2.548920 GCATCTCCCGGATCAAACCTAG 60.549 54.545 0.73 0.00 31.27 3.02
241 242 1.416401 GCATCTCCCGGATCAAACCTA 59.584 52.381 0.73 0.00 31.27 3.08
242 243 0.181350 GCATCTCCCGGATCAAACCT 59.819 55.000 0.73 0.00 31.27 3.50
243 244 0.181350 AGCATCTCCCGGATCAAACC 59.819 55.000 0.73 0.00 31.27 3.27
244 245 1.303309 CAGCATCTCCCGGATCAAAC 58.697 55.000 0.73 0.00 31.27 2.93
245 246 0.464373 GCAGCATCTCCCGGATCAAA 60.464 55.000 0.73 0.00 31.27 2.69
246 247 1.146930 GCAGCATCTCCCGGATCAA 59.853 57.895 0.73 0.00 31.27 2.57
247 248 0.469892 TAGCAGCATCTCCCGGATCA 60.470 55.000 0.73 0.00 31.27 2.92
248 249 0.681733 TTAGCAGCATCTCCCGGATC 59.318 55.000 0.73 0.00 31.27 3.36
249 250 1.356124 ATTAGCAGCATCTCCCGGAT 58.644 50.000 0.73 0.00 34.51 4.18
250 251 1.131638 AATTAGCAGCATCTCCCGGA 58.868 50.000 0.73 0.00 0.00 5.14
251 252 1.972872 AAATTAGCAGCATCTCCCGG 58.027 50.000 0.00 0.00 0.00 5.73
252 253 2.542411 GCAAAATTAGCAGCATCTCCCG 60.542 50.000 0.00 0.00 0.00 5.14
253 254 2.428171 TGCAAAATTAGCAGCATCTCCC 59.572 45.455 0.00 0.00 37.02 4.30
254 255 3.788333 TGCAAAATTAGCAGCATCTCC 57.212 42.857 0.00 0.00 37.02 3.71
255 256 8.295288 ACTATAATGCAAAATTAGCAGCATCTC 58.705 33.333 10.69 0.00 46.10 2.75
256 257 8.174733 ACTATAATGCAAAATTAGCAGCATCT 57.825 30.769 10.69 4.19 46.10 2.90
257 258 7.540055 GGACTATAATGCAAAATTAGCAGCATC 59.460 37.037 10.69 3.88 46.10 3.91
259 260 6.547141 AGGACTATAATGCAAAATTAGCAGCA 59.453 34.615 10.69 4.49 46.36 4.41
260 261 6.974965 AGGACTATAATGCAAAATTAGCAGC 58.025 36.000 10.69 0.00 46.36 5.25
270 271 9.710900 CACAACTGATATAGGACTATAATGCAA 57.289 33.333 3.39 0.00 32.39 4.08
271 272 9.088987 TCACAACTGATATAGGACTATAATGCA 57.911 33.333 3.39 0.00 32.39 3.96
272 273 9.929180 TTCACAACTGATATAGGACTATAATGC 57.071 33.333 3.39 0.00 32.39 3.56
299 300 6.292168 CGACTATTCAGAACGAACAAAGTTGT 60.292 38.462 0.00 0.00 44.72 3.32
300 301 6.065153 CGACTATTCAGAACGAACAAAGTTG 58.935 40.000 0.00 0.00 36.12 3.16
301 302 5.176958 CCGACTATTCAGAACGAACAAAGTT 59.823 40.000 0.00 0.00 36.12 2.66
302 303 4.684703 CCGACTATTCAGAACGAACAAAGT 59.315 41.667 0.00 0.00 36.12 2.66
303 304 4.091509 CCCGACTATTCAGAACGAACAAAG 59.908 45.833 0.00 0.00 36.12 2.77
304 305 3.991773 CCCGACTATTCAGAACGAACAAA 59.008 43.478 0.00 0.00 36.12 2.83
305 306 3.581755 CCCGACTATTCAGAACGAACAA 58.418 45.455 0.00 0.00 36.12 2.83
306 307 2.094390 CCCCGACTATTCAGAACGAACA 60.094 50.000 0.00 0.00 36.12 3.18
307 308 2.165030 TCCCCGACTATTCAGAACGAAC 59.835 50.000 0.00 0.00 36.12 3.95
308 309 2.426024 CTCCCCGACTATTCAGAACGAA 59.574 50.000 0.00 0.00 38.22 3.85
309 310 2.022195 CTCCCCGACTATTCAGAACGA 58.978 52.381 0.00 0.00 0.00 3.85
310 311 1.067212 CCTCCCCGACTATTCAGAACG 59.933 57.143 0.00 0.00 0.00 3.95
311 312 1.202545 GCCTCCCCGACTATTCAGAAC 60.203 57.143 0.00 0.00 0.00 3.01
312 313 1.120530 GCCTCCCCGACTATTCAGAA 58.879 55.000 0.00 0.00 0.00 3.02
313 314 1.107538 CGCCTCCCCGACTATTCAGA 61.108 60.000 0.00 0.00 0.00 3.27
314 315 1.364171 CGCCTCCCCGACTATTCAG 59.636 63.158 0.00 0.00 0.00 3.02
315 316 1.380785 ACGCCTCCCCGACTATTCA 60.381 57.895 0.00 0.00 0.00 2.57
316 317 1.363080 GACGCCTCCCCGACTATTC 59.637 63.158 0.00 0.00 0.00 1.75
317 318 1.380785 TGACGCCTCCCCGACTATT 60.381 57.895 0.00 0.00 0.00 1.73
318 319 2.125961 GTGACGCCTCCCCGACTAT 61.126 63.158 0.00 0.00 0.00 2.12
319 320 2.753043 GTGACGCCTCCCCGACTA 60.753 66.667 0.00 0.00 0.00 2.59
334 335 1.134401 AGATGCCAACATACCTCGGTG 60.134 52.381 0.00 0.00 36.35 4.94
335 336 1.139058 GAGATGCCAACATACCTCGGT 59.861 52.381 0.00 0.00 36.35 4.69
338 339 1.771255 AGGGAGATGCCAACATACCTC 59.229 52.381 0.00 0.00 36.35 3.85
343 344 1.211457 GAGTGAGGGAGATGCCAACAT 59.789 52.381 0.00 0.00 39.98 2.71
347 348 2.725312 GCGAGTGAGGGAGATGCCA 61.725 63.158 0.00 0.00 38.95 4.92
348 349 2.107953 GCGAGTGAGGGAGATGCC 59.892 66.667 0.00 0.00 0.00 4.40
360 361 1.482593 CAACCAATCCTAGGAGCGAGT 59.517 52.381 18.34 9.00 0.00 4.18
390 391 1.898574 CCACAACCAGGCTTTCGCT 60.899 57.895 0.00 0.00 36.09 4.93
391 392 2.130073 GACCACAACCAGGCTTTCGC 62.130 60.000 0.00 0.00 0.00 4.70
392 393 0.535102 AGACCACAACCAGGCTTTCG 60.535 55.000 0.00 0.00 0.00 3.46
393 394 1.609072 GAAGACCACAACCAGGCTTTC 59.391 52.381 0.00 0.00 0.00 2.62
394 395 1.692411 GAAGACCACAACCAGGCTTT 58.308 50.000 0.00 0.00 0.00 3.51
395 396 0.535102 CGAAGACCACAACCAGGCTT 60.535 55.000 0.00 0.00 0.00 4.35
396 397 1.071471 CGAAGACCACAACCAGGCT 59.929 57.895 0.00 0.00 0.00 4.58
397 398 0.951040 CTCGAAGACCACAACCAGGC 60.951 60.000 0.00 0.00 0.00 4.85
398 399 0.951040 GCTCGAAGACCACAACCAGG 60.951 60.000 0.00 0.00 0.00 4.45
399 400 1.284982 CGCTCGAAGACCACAACCAG 61.285 60.000 0.00 0.00 0.00 4.00
400 401 1.300620 CGCTCGAAGACCACAACCA 60.301 57.895 0.00 0.00 0.00 3.67
401 402 0.599204 TTCGCTCGAAGACCACAACC 60.599 55.000 0.02 0.00 0.00 3.77
402 403 1.192534 CTTTCGCTCGAAGACCACAAC 59.807 52.381 4.86 0.00 35.38 3.32
403 404 1.497991 CTTTCGCTCGAAGACCACAA 58.502 50.000 4.86 0.00 35.38 3.33
404 405 0.944311 GCTTTCGCTCGAAGACCACA 60.944 55.000 4.86 0.00 35.38 4.17
405 406 1.627550 GGCTTTCGCTCGAAGACCAC 61.628 60.000 15.76 3.32 35.38 4.16
406 407 1.374252 GGCTTTCGCTCGAAGACCA 60.374 57.895 15.76 0.00 35.38 4.02
407 408 0.172803 TAGGCTTTCGCTCGAAGACC 59.827 55.000 13.90 13.90 35.38 3.85
408 409 1.551145 CTAGGCTTTCGCTCGAAGAC 58.449 55.000 4.86 2.71 35.38 3.01
409 410 0.456221 CCTAGGCTTTCGCTCGAAGA 59.544 55.000 0.00 0.00 35.38 2.87
410 411 0.173708 ACCTAGGCTTTCGCTCGAAG 59.826 55.000 9.30 1.91 35.38 3.79
411 412 0.606604 AACCTAGGCTTTCGCTCGAA 59.393 50.000 9.30 0.02 36.09 3.71
412 413 0.172803 GAACCTAGGCTTTCGCTCGA 59.827 55.000 9.30 0.00 36.09 4.04
413 414 1.140407 CGAACCTAGGCTTTCGCTCG 61.140 60.000 18.32 8.19 38.31 5.03
414 415 0.806492 CCGAACCTAGGCTTTCGCTC 60.806 60.000 22.77 4.09 42.62 5.03
415 416 1.218316 CCGAACCTAGGCTTTCGCT 59.782 57.895 22.77 0.00 42.62 4.93
446 447 5.734220 GCGATGTTAAGAACAATGCCATCAT 60.734 40.000 0.00 0.00 45.86 2.45
447 448 4.438608 GCGATGTTAAGAACAATGCCATCA 60.439 41.667 0.00 0.00 45.86 3.07
448 449 4.037690 GCGATGTTAAGAACAATGCCATC 58.962 43.478 0.00 0.00 45.86 3.51
454 455 7.387948 ACTCAAAGTAGCGATGTTAAGAACAAT 59.612 33.333 0.00 0.00 45.86 2.71
456 457 6.220930 ACTCAAAGTAGCGATGTTAAGAACA 58.779 36.000 0.00 0.00 46.94 3.18
460 461 6.586463 TCAAGACTCAAAGTAGCGATGTTAAG 59.414 38.462 0.00 0.00 0.00 1.85
466 467 3.677424 GCCTCAAGACTCAAAGTAGCGAT 60.677 47.826 0.00 0.00 0.00 4.58
478 479 0.038744 CAACATGGGGCCTCAAGACT 59.961 55.000 16.35 0.00 0.00 3.24
486 512 0.034089 AAGTAGAGCAACATGGGGCC 60.034 55.000 0.00 0.00 0.00 5.80
488 514 3.012518 CTGAAAGTAGAGCAACATGGGG 58.987 50.000 0.00 0.00 0.00 4.96
508 534 3.454587 TTGGACAACGGCGAGCACT 62.455 57.895 16.62 0.00 0.00 4.40
515 541 0.321653 AGATCACCTTGGACAACGGC 60.322 55.000 0.00 0.00 0.00 5.68
516 542 2.076863 GAAGATCACCTTGGACAACGG 58.923 52.381 0.00 0.00 34.68 4.44
558 584 0.959372 ACCGTCTTGGACTCGTCGAT 60.959 55.000 0.00 0.00 42.00 3.59
559 585 1.168407 AACCGTCTTGGACTCGTCGA 61.168 55.000 0.00 0.00 42.00 4.20
564 590 1.594331 AAAGCAACCGTCTTGGACTC 58.406 50.000 0.00 0.00 42.00 3.36
575 601 0.881796 GCCAGTCCACTAAAGCAACC 59.118 55.000 0.00 0.00 0.00 3.77
578 604 0.476338 TTGGCCAGTCCACTAAAGCA 59.524 50.000 5.11 0.00 46.55 3.91
593 619 1.523938 GTAGATGGCGGGACTTGGC 60.524 63.158 0.00 0.00 0.00 4.52
602 628 0.105039 GAGGTGGGAAGTAGATGGCG 59.895 60.000 0.00 0.00 0.00 5.69
614 640 1.000896 ATGCCGAAAAGGAGGTGGG 60.001 57.895 0.00 0.00 45.00 4.61
619 645 1.098050 CCCTTGATGCCGAAAAGGAG 58.902 55.000 2.25 0.00 42.65 3.69
645 671 1.000955 AGACTTTCCTTGTCGACGCAT 59.999 47.619 11.62 0.00 39.24 4.73
658 684 5.645497 AGCACACCAATTCAGATAGACTTTC 59.355 40.000 0.00 0.00 0.00 2.62
662 688 4.764172 AGAGCACACCAATTCAGATAGAC 58.236 43.478 0.00 0.00 0.00 2.59
665 691 4.701651 CCAAAGAGCACACCAATTCAGATA 59.298 41.667 0.00 0.00 0.00 1.98
669 695 2.886523 CTCCAAAGAGCACACCAATTCA 59.113 45.455 0.00 0.00 32.13 2.57
672 698 1.145738 ACCTCCAAAGAGCACACCAAT 59.854 47.619 0.00 0.00 38.96 3.16
678 704 1.973812 GGCCACCTCCAAAGAGCAC 60.974 63.158 0.00 0.00 38.96 4.40
679 705 2.436109 GGCCACCTCCAAAGAGCA 59.564 61.111 0.00 0.00 38.96 4.26
681 707 2.045926 CCGGCCACCTCCAAAGAG 60.046 66.667 2.24 0.00 40.09 2.85
682 708 4.344865 GCCGGCCACCTCCAAAGA 62.345 66.667 18.11 0.00 0.00 2.52
683 709 3.944250 ATGCCGGCCACCTCCAAAG 62.944 63.158 26.77 0.00 0.00 2.77
685 711 3.978193 AATGCCGGCCACCTCCAA 61.978 61.111 26.77 1.65 0.00 3.53
687 713 3.721370 ATCAATGCCGGCCACCTCC 62.721 63.158 26.77 0.00 0.00 4.30
696 722 2.920964 CGCGTCTCGATCAATGCCG 61.921 63.158 0.00 0.00 41.67 5.69
698 724 3.997561 TCGCGTCTCGATCAATGC 58.002 55.556 5.77 0.00 43.16 3.56
715 741 0.673437 CCAAAACCGAGCACCATTGT 59.327 50.000 0.00 0.00 0.00 2.71
745 771 6.203723 ACACAACTACAAAGCAAAAGCAAAAA 59.796 30.769 0.00 0.00 0.00 1.94
746 772 5.698545 ACACAACTACAAAGCAAAAGCAAAA 59.301 32.000 0.00 0.00 0.00 2.44
747 773 5.233988 ACACAACTACAAAGCAAAAGCAAA 58.766 33.333 0.00 0.00 0.00 3.68
748 774 4.815269 ACACAACTACAAAGCAAAAGCAA 58.185 34.783 0.00 0.00 0.00 3.91
749 775 4.448537 ACACAACTACAAAGCAAAAGCA 57.551 36.364 0.00 0.00 0.00 3.91
750 776 6.033966 AGTAACACAACTACAAAGCAAAAGC 58.966 36.000 0.00 0.00 0.00 3.51
751 777 7.247728 TGAGTAACACAACTACAAAGCAAAAG 58.752 34.615 0.00 0.00 0.00 2.27
776 802 1.489230 ACCGAAAGACAAGACCACCTT 59.511 47.619 0.00 0.00 34.91 3.50
784 810 0.317479 ACCTCCGACCGAAAGACAAG 59.683 55.000 0.00 0.00 0.00 3.16
794 820 8.583296 ACTATAACTTATTATGAACCTCCGACC 58.417 37.037 0.00 0.00 32.98 4.79
808 834 9.944376 TCAAGTGCAAGAAGACTATAACTTATT 57.056 29.630 0.00 0.00 30.53 1.40
809 835 9.944376 TTCAAGTGCAAGAAGACTATAACTTAT 57.056 29.630 0.00 0.00 0.00 1.73
810 836 9.772973 TTTCAAGTGCAAGAAGACTATAACTTA 57.227 29.630 0.00 0.00 0.00 2.24
816 863 7.446625 ACAGAATTTCAAGTGCAAGAAGACTAT 59.553 33.333 0.00 0.00 0.00 2.12
821 868 6.069684 AGACAGAATTTCAAGTGCAAGAAG 57.930 37.500 0.00 0.00 0.00 2.85
863 910 6.795098 TTTCAAGAGTACGCAAATGTGTAT 57.205 33.333 9.77 0.71 42.18 2.29
910 957 1.066358 AGTTCGACTCGGGGATTTTCC 60.066 52.381 0.00 0.00 35.23 3.13
955 1007 2.328099 GCTTCTGAAGCGTGGGTGG 61.328 63.158 24.86 0.00 45.74 4.61
956 1008 3.257933 GCTTCTGAAGCGTGGGTG 58.742 61.111 24.86 0.00 45.74 4.61
965 1017 1.733041 CGTTCGAGCCGCTTCTGAA 60.733 57.895 0.00 0.00 0.00 3.02
966 1018 2.126463 CGTTCGAGCCGCTTCTGA 60.126 61.111 0.00 0.00 0.00 3.27
974 1026 1.227292 GAGGGGATTCGTTCGAGCC 60.227 63.158 0.00 7.36 0.00 4.70
994 1046 0.106967 GGCTCTGACCTTGGGATTCC 60.107 60.000 0.00 0.00 0.00 3.01
1041 1097 0.174845 TTCCGCGGTCGAATTGAGAT 59.825 50.000 27.15 0.00 38.10 2.75
1052 1108 0.177373 GAAATCTAGGGTTCCGCGGT 59.823 55.000 27.15 7.91 0.00 5.68
1140 1197 2.751837 GCGCCTCCCCTCCAAAAG 60.752 66.667 0.00 0.00 0.00 2.27
1161 1218 2.222027 GCTGGAATTTGTAGATCGGGG 58.778 52.381 0.00 0.00 0.00 5.73
1169 1238 3.244526 TGCTCTGTCTGCTGGAATTTGTA 60.245 43.478 0.00 0.00 0.00 2.41
1182 1251 1.674359 AGATCGACGATGCTCTGTCT 58.326 50.000 16.49 1.72 32.93 3.41
1185 1254 1.268285 ACGAAGATCGACGATGCTCTG 60.268 52.381 16.49 10.09 43.74 3.35
1186 1255 1.003331 GACGAAGATCGACGATGCTCT 60.003 52.381 16.49 4.16 43.74 4.09
1187 1256 1.268083 TGACGAAGATCGACGATGCTC 60.268 52.381 16.49 10.07 43.74 4.26
1188 1257 0.733150 TGACGAAGATCGACGATGCT 59.267 50.000 16.49 9.32 43.74 3.79
1189 1258 1.253034 GTTGACGAAGATCGACGATGC 59.747 52.381 16.49 7.10 43.74 3.91
1191 1260 2.190325 GGTTGACGAAGATCGACGAT 57.810 50.000 10.78 10.78 43.74 3.73
1211 1280 1.958205 CAGATTGCGGCCCTCGATC 60.958 63.158 10.52 10.52 42.43 3.69
1212 1281 2.109799 CAGATTGCGGCCCTCGAT 59.890 61.111 0.00 0.00 42.43 3.59
1213 1282 4.161295 CCAGATTGCGGCCCTCGA 62.161 66.667 0.00 0.00 42.43 4.04
1215 1284 4.115199 ACCCAGATTGCGGCCCTC 62.115 66.667 0.00 0.00 0.00 4.30
1216 1285 4.431131 CACCCAGATTGCGGCCCT 62.431 66.667 0.00 0.00 0.00 5.19
1222 1291 2.163211 GCTTCTTCTTCACCCAGATTGC 59.837 50.000 0.00 0.00 0.00 3.56
1225 1294 3.454082 CCTAGCTTCTTCTTCACCCAGAT 59.546 47.826 0.00 0.00 0.00 2.90
1229 1298 2.093394 GGACCTAGCTTCTTCTTCACCC 60.093 54.545 0.00 0.00 0.00 4.61
1233 1302 1.471851 GCCGGACCTAGCTTCTTCTTC 60.472 57.143 5.05 0.00 0.00 2.87
1234 1303 0.537653 GCCGGACCTAGCTTCTTCTT 59.462 55.000 5.05 0.00 0.00 2.52
1235 1304 1.668101 CGCCGGACCTAGCTTCTTCT 61.668 60.000 5.05 0.00 0.00 2.85
1254 1323 1.059006 ATCAGAGGCCTCCCCATGTC 61.059 60.000 29.54 2.20 35.39 3.06
1255 1324 1.005289 ATCAGAGGCCTCCCCATGT 59.995 57.895 29.54 6.63 35.39 3.21
1274 1347 2.031857 CGGCTTCTCCACTATCTCGTAC 60.032 54.545 0.00 0.00 34.01 3.67
1317 1390 0.908198 AACCAGATGAGGGAGCAGAC 59.092 55.000 0.00 0.00 0.00 3.51
1652 1725 4.456253 ACGACGCACGAGTAGCCG 62.456 66.667 9.43 0.00 45.77 5.52
1685 1758 2.359850 TGCTTCGCGGCCAGAATT 60.360 55.556 6.13 0.00 0.00 2.17
1697 1770 2.357034 TTGGACGACGGCTGCTTC 60.357 61.111 0.00 0.00 0.00 3.86
1763 1836 4.040445 TGACGTGAATATGAGCGATTCA 57.960 40.909 0.00 3.28 40.23 2.57
1766 1839 4.620982 TGATTGACGTGAATATGAGCGAT 58.379 39.130 0.00 0.00 0.00 4.58
1802 1875 1.817099 CAGGTGGCCGATGAAGCTC 60.817 63.158 0.00 0.00 0.00 4.09
1823 1896 0.750850 AGTACCCAACGATGATCCCG 59.249 55.000 0.00 3.46 0.00 5.14
1838 1911 1.673808 AACCCCAGGCGATCGAGTAC 61.674 60.000 21.57 5.34 0.00 2.73
1844 1917 1.025041 GAATCAAACCCCAGGCGATC 58.975 55.000 0.00 0.00 0.00 3.69
1847 1920 0.457035 CATGAATCAAACCCCAGGCG 59.543 55.000 0.00 0.00 0.00 5.52
1886 1959 0.888736 TCCACCCAAGCAATGTGACG 60.889 55.000 0.00 0.00 31.66 4.35
1893 1966 0.469705 AGCACAATCCACCCAAGCAA 60.470 50.000 0.00 0.00 0.00 3.91
1898 1971 0.478072 AGACAAGCACAATCCACCCA 59.522 50.000 0.00 0.00 0.00 4.51
1907 1980 2.473816 CTCAAGACGAAGACAAGCACA 58.526 47.619 0.00 0.00 0.00 4.57
1940 2013 2.350863 ACCTCATCTCCAAAGACCCT 57.649 50.000 0.00 0.00 33.32 4.34
1997 2070 0.110486 AGGCGACCAAACCAACAGAT 59.890 50.000 0.00 0.00 0.00 2.90
2049 2122 1.374947 CAACTCCTCTTCCGGGCAA 59.625 57.895 0.00 0.00 0.00 4.52
2069 2142 6.656693 CACTGAAGGAAGGTCATACAAAATCT 59.343 38.462 0.00 0.00 0.00 2.40
2087 2160 1.155042 GCAGCTCTTCCACACTGAAG 58.845 55.000 0.00 0.00 42.52 3.02
2088 2161 0.761187 AGCAGCTCTTCCACACTGAA 59.239 50.000 0.00 0.00 31.67 3.02
2111 2184 7.359595 TGAAACAAGACCTATCAAACATTTCG 58.640 34.615 0.00 0.00 0.00 3.46
2192 2265 6.542821 TCTGATGAAAGAAACCCATAACACT 58.457 36.000 0.00 0.00 0.00 3.55
2299 2381 6.068853 TCCTTTTCCTACATGATTCCCATTCT 60.069 38.462 0.00 0.00 31.94 2.40
2323 2405 4.032703 ACAGCACAAACATTCAGTTGTC 57.967 40.909 0.00 0.00 41.19 3.18
2333 2415 6.654582 ACAATCTGATATGTACAGCACAAACA 59.345 34.615 0.33 0.00 41.55 2.83
2334 2416 7.076842 ACAATCTGATATGTACAGCACAAAC 57.923 36.000 0.33 0.00 41.55 2.93
2401 2483 7.230108 CCAAGCTATGTCATCCATATGAAAAGT 59.770 37.037 3.65 0.00 43.69 2.66
2418 2500 4.521146 ACCAGTTCTTCATCCAAGCTATG 58.479 43.478 0.00 0.00 31.26 2.23
2461 2547 4.291783 CCTCGATTCACTATCCGAACTTC 58.708 47.826 0.00 0.00 0.00 3.01
2481 2567 1.900486 GTCCTACACTTGTACTGGCCT 59.100 52.381 3.32 0.00 0.00 5.19
2531 2617 3.818210 ACATATCCGCACTTCAAAACACA 59.182 39.130 0.00 0.00 0.00 3.72
2564 2651 7.957002 TGTGTCAACATGGTATGGTTTTAATT 58.043 30.769 0.00 0.00 33.60 1.40
2567 2654 6.961360 TTGTGTCAACATGGTATGGTTTTA 57.039 33.333 0.00 0.00 35.83 1.52
2568 2655 5.860941 TTGTGTCAACATGGTATGGTTTT 57.139 34.783 0.00 0.00 35.83 2.43
2572 2659 3.444742 AGCATTGTGTCAACATGGTATGG 59.555 43.478 0.00 0.00 35.83 2.74
2573 2660 4.707030 AGCATTGTGTCAACATGGTATG 57.293 40.909 0.00 0.00 35.83 2.39
2574 2661 7.282585 AGTATAGCATTGTGTCAACATGGTAT 58.717 34.615 16.08 16.08 39.31 2.73
2614 2702 2.489329 CAAAGAAGCACATACCACCAGG 59.511 50.000 0.00 0.00 42.21 4.45
2626 2714 4.259356 CATCTGAGATGACCAAAGAAGCA 58.741 43.478 17.28 0.00 0.00 3.91
2662 2750 4.371855 TGCATCTACAAGTCGAGGTAAG 57.628 45.455 0.00 0.00 0.00 2.34
2717 2805 9.434420 CTTCTCATTCCTTTACATGATATCCTC 57.566 37.037 0.00 0.00 0.00 3.71
2802 2986 8.948631 TCTTAATTTATGGCTTGAGTCTACAG 57.051 34.615 0.00 0.00 0.00 2.74
2822 3006 8.347004 TCCACATATGAAAAGCAACATCTTAA 57.653 30.769 10.38 0.00 0.00 1.85
2823 3007 7.936496 TCCACATATGAAAAGCAACATCTTA 57.064 32.000 10.38 0.00 0.00 2.10
2920 3104 5.326200 ACAAGTCTGCTGTATACCTGTAC 57.674 43.478 0.00 0.00 0.00 2.90
2921 3105 5.715279 AGAACAAGTCTGCTGTATACCTGTA 59.285 40.000 0.00 0.00 34.29 2.74
2950 3134 0.038251 CAAGGCGACTCAGCAGTGTA 60.038 55.000 0.00 0.00 42.68 2.90
2954 3138 3.123620 GGCAAGGCGACTCAGCAG 61.124 66.667 16.41 0.00 42.68 4.24
2958 3142 2.351924 AAAAGGGGCAAGGCGACTCA 62.352 55.000 0.00 0.00 42.68 3.41
2964 3148 1.078918 GATGCAAAAGGGGCAAGGC 60.079 57.895 0.00 0.00 45.60 4.35
2997 3181 6.759272 TGGTATACCAGAATAGCATCAGAAC 58.241 40.000 21.05 0.00 42.01 3.01
3100 3342 3.056393 TGAAAAGAAAGCATGCATCCAGG 60.056 43.478 21.98 0.00 0.00 4.45
3130 3373 2.545946 CGCCTGCTAGAATTTAGCTTCC 59.454 50.000 15.79 7.17 40.95 3.46
3186 3429 5.413833 AGTTCTCACTCGATTTGCATGAAAT 59.586 36.000 0.00 0.00 36.94 2.17
3189 3432 3.928992 GAGTTCTCACTCGATTTGCATGA 59.071 43.478 0.00 0.00 40.30 3.07
3190 3433 4.256140 GAGTTCTCACTCGATTTGCATG 57.744 45.455 0.00 0.00 40.30 4.06
3222 3465 2.420628 TGCATAACACAAACAGCTGC 57.579 45.000 15.27 0.00 0.00 5.25
3226 3469 9.800433 TCCATATTTATTGCATAACACAAACAG 57.200 29.630 0.00 0.00 0.00 3.16
3294 3537 4.070009 GGTCGGTGATGTACTTCCTTTTT 58.930 43.478 6.32 0.00 0.00 1.94
3330 3573 1.541147 CCCTGAAATGCGATGTTGTGT 59.459 47.619 0.00 0.00 0.00 3.72
3340 3583 2.580815 GCCTTGGCCCTGAAATGC 59.419 61.111 0.00 0.00 0.00 3.56
3374 3617 4.848357 ACAGACAATTCCACTTATCCTGG 58.152 43.478 0.00 0.00 0.00 4.45
3375 3618 4.878397 GGACAGACAATTCCACTTATCCTG 59.122 45.833 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.