Multiple sequence alignment - TraesCS3B01G431700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G431700 chr3B 100.000 3666 0 0 1 3666 670700104 670696439 0.000000e+00 6770.0
1 TraesCS3B01G431700 chr3B 94.595 222 12 0 2612 2833 670697274 670697053 9.750000e-91 344.0
2 TraesCS3B01G431700 chr3B 94.595 222 12 0 2831 3052 670697493 670697272 9.750000e-91 344.0
3 TraesCS3B01G431700 chr3B 93.860 228 14 0 45 272 670730765 670730538 9.750000e-91 344.0
4 TraesCS3B01G431700 chr3B 100.000 37 0 0 645 681 670699423 670699387 6.570000e-08 69.4
5 TraesCS3B01G431700 chr3B 100.000 37 0 0 682 718 670699460 670699424 6.570000e-08 69.4
6 TraesCS3B01G431700 chr3D 95.133 1274 50 9 770 2041 508331513 508330250 0.000000e+00 1999.0
7 TraesCS3B01G431700 chr3D 97.456 1140 19 5 2537 3666 508329823 508328684 0.000000e+00 1936.0
8 TraesCS3B01G431700 chr3D 97.454 432 3 1 1944 2375 508330245 508329822 0.000000e+00 730.0
9 TraesCS3B01G431700 chr3D 90.547 402 29 5 284 681 508333871 508333475 1.170000e-144 523.0
10 TraesCS3B01G431700 chr3D 95.964 223 9 0 2830 3052 508329749 508329527 2.690000e-96 363.0
11 TraesCS3B01G431700 chr3D 95.536 224 8 1 2612 2833 508329529 508329306 1.250000e-94 357.0
12 TraesCS3B01G431700 chr5A 96.023 176 7 0 2373 2548 382566637 382566812 1.670000e-73 287.0
13 TraesCS3B01G431700 chr5A 95.531 179 7 1 2363 2541 115664670 115664847 5.990000e-73 285.0
14 TraesCS3B01G431700 chr5A 96.512 172 5 1 2367 2538 290391867 290391697 2.160000e-72 283.0
15 TraesCS3B01G431700 chr4D 96.000 175 7 0 2374 2548 477898959 477898785 5.990000e-73 285.0
16 TraesCS3B01G431700 chr2B 97.041 169 5 0 2372 2540 736244881 736245049 5.990000e-73 285.0
17 TraesCS3B01G431700 chr2B 83.415 205 29 5 293 496 202270008 202269808 6.250000e-43 185.0
18 TraesCS3B01G431700 chr2B 86.093 151 18 1 682 829 787821061 787820911 3.790000e-35 159.0
19 TraesCS3B01G431700 chr2A 96.512 172 4 1 2370 2541 310407932 310408101 2.160000e-72 283.0
20 TraesCS3B01G431700 chr6B 93.956 182 10 1 2358 2538 240047075 240046894 1.300000e-69 274.0
21 TraesCS3B01G431700 chr6B 93.514 185 10 2 2368 2551 685530955 685531138 1.300000e-69 274.0
22 TraesCS3B01G431700 chr5D 92.670 191 12 2 2356 2545 61715199 61715388 1.300000e-69 274.0
23 TraesCS3B01G431700 chr2D 79.181 293 46 12 1 284 226626932 226626646 4.830000e-44 189.0
24 TraesCS3B01G431700 chr2D 87.421 159 17 3 293 451 143991602 143991447 2.910000e-41 180.0
25 TraesCS3B01G431700 chr2D 83.333 150 22 1 683 829 650656903 650656754 6.390000e-28 135.0
26 TraesCS3B01G431700 chr5B 88.514 148 17 0 682 829 265528751 265528898 2.910000e-41 180.0
27 TraesCS3B01G431700 chr6A 88.000 150 17 1 683 832 2684953 2685101 3.760000e-40 176.0
28 TraesCS3B01G431700 chr1B 78.838 241 34 11 52 283 637549538 637549770 2.950000e-31 147.0
29 TraesCS3B01G431700 chr1B 82.353 153 17 7 304 451 642117710 642117563 1.380000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G431700 chr3B 670696439 670700104 3665 True 1519.360000 6770 97.838000 1 3666 5 chr3B.!!$R2 3665
1 TraesCS3B01G431700 chr3D 508328684 508333871 5187 True 984.666667 1999 95.348333 284 3666 6 chr3D.!!$R1 3382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 2360 0.041047 CACATGCGTGTCCACAACAG 60.041 55.000 9.07 0.0 38.97 3.16 F
878 2790 0.328258 AAATTCCCCACCTCCACTCG 59.672 55.000 0.00 0.0 0.00 4.18 F
1656 3569 0.387202 ATCGCAGAGACCTTGATCGG 59.613 55.000 0.00 0.0 43.63 4.18 F
2287 4302 1.335689 CCGGGTAACTACGCTATGCTC 60.336 57.143 0.00 0.0 37.04 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 4264 0.643820 GGCGACAATGCGTAGTACAC 59.356 55.000 0.38 0.00 35.06 2.90 R
2250 4265 0.799152 CGGCGACAATGCGTAGTACA 60.799 55.000 0.00 0.00 35.06 2.90 R
2527 4542 1.134037 AGCTCTGTACTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63 R
3384 5403 3.257873 CCTATACCAGCCTCATGAGTCAG 59.742 52.174 21.11 5.54 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.550437 CTAGGGTTGGATGTTGGAGAG 57.450 52.381 0.00 0.00 0.00 3.20
21 22 0.995024 AGGGTTGGATGTTGGAGAGG 59.005 55.000 0.00 0.00 0.00 3.69
22 23 0.991920 GGGTTGGATGTTGGAGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
23 24 1.354368 GGGTTGGATGTTGGAGAGGAA 59.646 52.381 0.00 0.00 0.00 3.36
24 25 2.619074 GGGTTGGATGTTGGAGAGGAAG 60.619 54.545 0.00 0.00 0.00 3.46
25 26 2.040412 GGTTGGATGTTGGAGAGGAAGT 59.960 50.000 0.00 0.00 0.00 3.01
26 27 3.263425 GGTTGGATGTTGGAGAGGAAGTA 59.737 47.826 0.00 0.00 0.00 2.24
27 28 4.508662 GTTGGATGTTGGAGAGGAAGTAG 58.491 47.826 0.00 0.00 0.00 2.57
28 29 3.107601 TGGATGTTGGAGAGGAAGTAGG 58.892 50.000 0.00 0.00 0.00 3.18
29 30 2.158885 GGATGTTGGAGAGGAAGTAGGC 60.159 54.545 0.00 0.00 0.00 3.93
30 31 2.327325 TGTTGGAGAGGAAGTAGGCT 57.673 50.000 0.00 0.00 0.00 4.58
31 32 2.180276 TGTTGGAGAGGAAGTAGGCTC 58.820 52.381 0.00 0.00 0.00 4.70
32 33 2.225394 TGTTGGAGAGGAAGTAGGCTCT 60.225 50.000 0.00 0.00 0.00 4.09
33 34 2.151502 TGGAGAGGAAGTAGGCTCTG 57.848 55.000 0.00 0.00 0.00 3.35
34 35 1.641192 TGGAGAGGAAGTAGGCTCTGA 59.359 52.381 0.00 0.00 0.00 3.27
35 36 2.043115 TGGAGAGGAAGTAGGCTCTGAA 59.957 50.000 0.00 0.00 0.00 3.02
36 37 3.304829 GGAGAGGAAGTAGGCTCTGAAT 58.695 50.000 0.00 0.00 0.00 2.57
37 38 4.079154 TGGAGAGGAAGTAGGCTCTGAATA 60.079 45.833 0.00 0.00 0.00 1.75
38 39 4.279922 GGAGAGGAAGTAGGCTCTGAATAC 59.720 50.000 0.00 0.00 0.00 1.89
39 40 4.219919 AGAGGAAGTAGGCTCTGAATACC 58.780 47.826 0.00 0.00 0.00 2.73
40 41 3.961408 GAGGAAGTAGGCTCTGAATACCA 59.039 47.826 0.00 0.00 0.00 3.25
41 42 4.561752 AGGAAGTAGGCTCTGAATACCAT 58.438 43.478 0.00 0.00 0.00 3.55
42 43 4.346418 AGGAAGTAGGCTCTGAATACCATG 59.654 45.833 0.00 0.00 0.00 3.66
43 44 4.345257 GGAAGTAGGCTCTGAATACCATGA 59.655 45.833 0.00 0.00 0.00 3.07
44 45 5.163301 GGAAGTAGGCTCTGAATACCATGAA 60.163 44.000 0.00 0.00 0.00 2.57
45 46 6.465035 GGAAGTAGGCTCTGAATACCATGAAT 60.465 42.308 0.00 0.00 0.00 2.57
46 47 6.506538 AGTAGGCTCTGAATACCATGAATT 57.493 37.500 0.00 0.00 0.00 2.17
47 48 6.294473 AGTAGGCTCTGAATACCATGAATTG 58.706 40.000 0.00 0.00 0.00 2.32
61 62 3.969117 TGAATTGGATGAAGCGTATGC 57.031 42.857 0.00 0.00 43.24 3.14
62 63 3.277715 TGAATTGGATGAAGCGTATGCA 58.722 40.909 10.11 0.00 46.23 3.96
63 64 3.884693 TGAATTGGATGAAGCGTATGCAT 59.115 39.130 10.11 3.79 46.23 3.96
64 65 4.023792 TGAATTGGATGAAGCGTATGCATC 60.024 41.667 10.11 7.51 46.23 3.91
65 66 2.916702 TGGATGAAGCGTATGCATCT 57.083 45.000 12.94 0.00 46.23 2.90
66 67 2.486918 TGGATGAAGCGTATGCATCTG 58.513 47.619 12.94 0.00 46.23 2.90
67 68 1.802960 GGATGAAGCGTATGCATCTGG 59.197 52.381 12.94 0.00 46.23 3.86
68 69 1.196354 GATGAAGCGTATGCATCTGGC 59.804 52.381 12.94 5.36 46.23 4.85
78 79 4.457496 CATCTGGCAGGGACGCGT 62.457 66.667 13.85 13.85 0.00 6.01
79 80 3.706373 ATCTGGCAGGGACGCGTT 61.706 61.111 15.53 0.00 0.00 4.84
80 81 2.355986 ATCTGGCAGGGACGCGTTA 61.356 57.895 15.53 0.00 0.00 3.18
81 82 2.573609 ATCTGGCAGGGACGCGTTAC 62.574 60.000 15.53 10.07 0.00 2.50
94 95 3.941088 CGCGTTACGTGTTATATAGCC 57.059 47.619 10.36 0.00 36.87 3.93
95 96 3.299162 CGCGTTACGTGTTATATAGCCA 58.701 45.455 10.36 0.00 36.87 4.75
96 97 3.730215 CGCGTTACGTGTTATATAGCCAA 59.270 43.478 10.36 0.00 36.87 4.52
97 98 4.206814 CGCGTTACGTGTTATATAGCCAAA 59.793 41.667 10.36 0.00 36.87 3.28
98 99 5.276301 CGCGTTACGTGTTATATAGCCAAAA 60.276 40.000 10.36 0.00 36.87 2.44
99 100 6.476896 GCGTTACGTGTTATATAGCCAAAAA 58.523 36.000 6.63 0.00 0.00 1.94
118 119 4.914177 AAAAGTTTACAGGGATACGGGA 57.086 40.909 0.00 0.00 37.60 5.14
119 120 4.482952 AAAGTTTACAGGGATACGGGAG 57.517 45.455 0.00 0.00 37.60 4.30
121 122 3.447950 AGTTTACAGGGATACGGGAGTT 58.552 45.455 0.00 0.00 43.33 3.01
122 123 4.613437 AGTTTACAGGGATACGGGAGTTA 58.387 43.478 0.00 0.00 43.33 2.24
123 124 4.648307 AGTTTACAGGGATACGGGAGTTAG 59.352 45.833 0.00 0.00 43.33 2.34
124 125 2.083628 ACAGGGATACGGGAGTTAGG 57.916 55.000 0.00 0.00 43.33 2.69
125 126 1.290130 ACAGGGATACGGGAGTTAGGT 59.710 52.381 0.00 0.00 43.33 3.08
126 127 2.292719 ACAGGGATACGGGAGTTAGGTT 60.293 50.000 0.00 0.00 43.33 3.50
127 128 3.052642 ACAGGGATACGGGAGTTAGGTTA 60.053 47.826 0.00 0.00 43.33 2.85
128 129 3.320256 CAGGGATACGGGAGTTAGGTTAC 59.680 52.174 0.00 0.00 43.33 2.50
129 130 3.052642 AGGGATACGGGAGTTAGGTTACA 60.053 47.826 0.00 0.00 43.33 2.41
130 131 3.899980 GGGATACGGGAGTTAGGTTACAT 59.100 47.826 0.00 0.00 43.33 2.29
131 132 4.021632 GGGATACGGGAGTTAGGTTACATC 60.022 50.000 0.00 0.00 43.33 3.06
132 133 4.320788 GGATACGGGAGTTAGGTTACATCG 60.321 50.000 0.00 0.00 43.33 3.84
133 134 1.135721 ACGGGAGTTAGGTTACATCGC 59.864 52.381 0.00 0.00 43.33 4.58
134 135 1.135527 CGGGAGTTAGGTTACATCGCA 59.864 52.381 0.00 0.00 0.00 5.10
135 136 2.223971 CGGGAGTTAGGTTACATCGCAT 60.224 50.000 0.00 0.00 0.00 4.73
136 137 3.131396 GGGAGTTAGGTTACATCGCATG 58.869 50.000 0.00 0.00 0.00 4.06
137 138 3.131396 GGAGTTAGGTTACATCGCATGG 58.869 50.000 0.00 0.00 33.60 3.66
138 139 3.181469 GGAGTTAGGTTACATCGCATGGA 60.181 47.826 0.00 0.00 33.60 3.41
139 140 4.503296 GGAGTTAGGTTACATCGCATGGAT 60.503 45.833 0.00 0.00 35.09 3.41
140 141 5.036117 AGTTAGGTTACATCGCATGGATT 57.964 39.130 0.00 0.00 31.28 3.01
141 142 4.816385 AGTTAGGTTACATCGCATGGATTG 59.184 41.667 0.00 0.00 31.28 2.67
142 143 3.558931 AGGTTACATCGCATGGATTGA 57.441 42.857 0.00 0.00 31.28 2.57
143 144 3.206150 AGGTTACATCGCATGGATTGAC 58.794 45.455 0.00 0.00 31.28 3.18
144 145 2.290641 GGTTACATCGCATGGATTGACC 59.709 50.000 0.00 0.84 39.54 4.02
145 146 2.254546 TACATCGCATGGATTGACCC 57.745 50.000 0.00 0.00 38.00 4.46
146 147 0.548031 ACATCGCATGGATTGACCCT 59.452 50.000 0.00 0.00 38.00 4.34
147 148 1.233019 CATCGCATGGATTGACCCTC 58.767 55.000 0.00 0.00 38.00 4.30
148 149 0.839277 ATCGCATGGATTGACCCTCA 59.161 50.000 0.00 0.00 38.00 3.86
149 150 0.107703 TCGCATGGATTGACCCTCAC 60.108 55.000 0.00 0.00 38.00 3.51
150 151 1.431488 CGCATGGATTGACCCTCACG 61.431 60.000 0.00 0.00 38.00 4.35
151 152 1.718757 GCATGGATTGACCCTCACGC 61.719 60.000 0.00 0.00 38.00 5.34
152 153 0.392863 CATGGATTGACCCTCACGCA 60.393 55.000 0.00 0.00 38.00 5.24
153 154 0.327924 ATGGATTGACCCTCACGCAA 59.672 50.000 0.00 0.00 38.00 4.85
154 155 0.321564 TGGATTGACCCTCACGCAAG 60.322 55.000 0.00 0.00 40.34 4.01
155 156 1.648467 GGATTGACCCTCACGCAAGC 61.648 60.000 0.00 0.00 45.62 4.01
156 157 0.674895 GATTGACCCTCACGCAAGCT 60.675 55.000 0.00 0.00 45.62 3.74
157 158 0.613260 ATTGACCCTCACGCAAGCTA 59.387 50.000 0.00 0.00 45.62 3.32
158 159 0.613260 TTGACCCTCACGCAAGCTAT 59.387 50.000 0.00 0.00 45.62 2.97
159 160 1.480789 TGACCCTCACGCAAGCTATA 58.519 50.000 0.00 0.00 45.62 1.31
160 161 1.136305 TGACCCTCACGCAAGCTATAC 59.864 52.381 0.00 0.00 45.62 1.47
161 162 1.136305 GACCCTCACGCAAGCTATACA 59.864 52.381 0.00 0.00 45.62 2.29
162 163 1.137086 ACCCTCACGCAAGCTATACAG 59.863 52.381 0.00 0.00 45.62 2.74
163 164 1.137086 CCCTCACGCAAGCTATACAGT 59.863 52.381 0.00 0.00 45.62 3.55
164 165 2.196749 CCTCACGCAAGCTATACAGTG 58.803 52.381 0.00 0.00 45.62 3.66
165 166 2.159240 CCTCACGCAAGCTATACAGTGA 60.159 50.000 0.00 9.13 45.62 3.41
166 167 3.491619 CCTCACGCAAGCTATACAGTGAT 60.492 47.826 0.00 0.00 45.62 3.06
167 168 4.261614 CCTCACGCAAGCTATACAGTGATA 60.262 45.833 0.00 0.00 45.62 2.15
168 169 5.257082 TCACGCAAGCTATACAGTGATAA 57.743 39.130 0.00 0.00 45.62 1.75
169 170 5.281727 TCACGCAAGCTATACAGTGATAAG 58.718 41.667 0.00 0.00 45.62 1.73
170 171 5.067283 TCACGCAAGCTATACAGTGATAAGA 59.933 40.000 0.00 0.00 45.62 2.10
171 172 5.748630 CACGCAAGCTATACAGTGATAAGAA 59.251 40.000 0.00 0.00 45.62 2.52
172 173 6.422100 CACGCAAGCTATACAGTGATAAGAAT 59.578 38.462 0.00 0.00 45.62 2.40
173 174 7.595130 CACGCAAGCTATACAGTGATAAGAATA 59.405 37.037 0.00 0.00 45.62 1.75
174 175 8.141909 ACGCAAGCTATACAGTGATAAGAATAA 58.858 33.333 0.00 0.00 45.62 1.40
175 176 8.428536 CGCAAGCTATACAGTGATAAGAATAAC 58.571 37.037 0.00 0.00 0.00 1.89
176 177 8.713271 GCAAGCTATACAGTGATAAGAATAACC 58.287 37.037 0.00 0.00 0.00 2.85
177 178 9.209175 CAAGCTATACAGTGATAAGAATAACCC 57.791 37.037 0.00 0.00 0.00 4.11
178 179 8.728596 AGCTATACAGTGATAAGAATAACCCT 57.271 34.615 0.00 0.00 0.00 4.34
179 180 9.824216 AGCTATACAGTGATAAGAATAACCCTA 57.176 33.333 0.00 0.00 0.00 3.53
183 184 7.414222 ACAGTGATAAGAATAACCCTAACGA 57.586 36.000 0.00 0.00 0.00 3.85
184 185 7.263496 ACAGTGATAAGAATAACCCTAACGAC 58.737 38.462 0.00 0.00 0.00 4.34
185 186 6.700520 CAGTGATAAGAATAACCCTAACGACC 59.299 42.308 0.00 0.00 0.00 4.79
186 187 6.610425 AGTGATAAGAATAACCCTAACGACCT 59.390 38.462 0.00 0.00 0.00 3.85
187 188 7.781693 AGTGATAAGAATAACCCTAACGACCTA 59.218 37.037 0.00 0.00 0.00 3.08
188 189 8.416329 GTGATAAGAATAACCCTAACGACCTAA 58.584 37.037 0.00 0.00 0.00 2.69
189 190 8.416329 TGATAAGAATAACCCTAACGACCTAAC 58.584 37.037 0.00 0.00 0.00 2.34
190 191 6.610075 AAGAATAACCCTAACGACCTAACA 57.390 37.500 0.00 0.00 0.00 2.41
191 192 6.610075 AGAATAACCCTAACGACCTAACAA 57.390 37.500 0.00 0.00 0.00 2.83
192 193 6.401394 AGAATAACCCTAACGACCTAACAAC 58.599 40.000 0.00 0.00 0.00 3.32
193 194 3.407424 AACCCTAACGACCTAACAACC 57.593 47.619 0.00 0.00 0.00 3.77
194 195 1.625315 ACCCTAACGACCTAACAACCC 59.375 52.381 0.00 0.00 0.00 4.11
195 196 1.404583 CCCTAACGACCTAACAACCCG 60.405 57.143 0.00 0.00 0.00 5.28
196 197 1.545582 CCTAACGACCTAACAACCCGA 59.454 52.381 0.00 0.00 0.00 5.14
197 198 2.167075 CCTAACGACCTAACAACCCGAT 59.833 50.000 0.00 0.00 0.00 4.18
198 199 2.845363 AACGACCTAACAACCCGATT 57.155 45.000 0.00 0.00 0.00 3.34
199 200 3.959535 AACGACCTAACAACCCGATTA 57.040 42.857 0.00 0.00 0.00 1.75
200 201 3.236632 ACGACCTAACAACCCGATTAC 57.763 47.619 0.00 0.00 0.00 1.89
201 202 2.562298 ACGACCTAACAACCCGATTACA 59.438 45.455 0.00 0.00 0.00 2.41
202 203 3.196254 ACGACCTAACAACCCGATTACAT 59.804 43.478 0.00 0.00 0.00 2.29
203 204 3.800506 CGACCTAACAACCCGATTACATC 59.199 47.826 0.00 0.00 0.00 3.06
204 205 4.678574 CGACCTAACAACCCGATTACATCA 60.679 45.833 0.00 0.00 0.00 3.07
205 206 5.168647 ACCTAACAACCCGATTACATCAA 57.831 39.130 0.00 0.00 0.00 2.57
206 207 4.939439 ACCTAACAACCCGATTACATCAAC 59.061 41.667 0.00 0.00 0.00 3.18
207 208 4.938832 CCTAACAACCCGATTACATCAACA 59.061 41.667 0.00 0.00 0.00 3.33
208 209 4.759516 AACAACCCGATTACATCAACAC 57.240 40.909 0.00 0.00 0.00 3.32
209 210 3.745799 ACAACCCGATTACATCAACACA 58.254 40.909 0.00 0.00 0.00 3.72
210 211 3.500680 ACAACCCGATTACATCAACACAC 59.499 43.478 0.00 0.00 0.00 3.82
211 212 2.343101 ACCCGATTACATCAACACACG 58.657 47.619 0.00 0.00 0.00 4.49
212 213 1.062002 CCCGATTACATCAACACACGC 59.938 52.381 0.00 0.00 0.00 5.34
213 214 1.729517 CCGATTACATCAACACACGCA 59.270 47.619 0.00 0.00 0.00 5.24
214 215 2.158645 CCGATTACATCAACACACGCAA 59.841 45.455 0.00 0.00 0.00 4.85
215 216 3.152983 CGATTACATCAACACACGCAAC 58.847 45.455 0.00 0.00 0.00 4.17
216 217 2.654426 TTACATCAACACACGCAACG 57.346 45.000 0.00 0.00 0.00 4.10
217 218 0.233590 TACATCAACACACGCAACGC 59.766 50.000 0.00 0.00 0.00 4.84
218 219 1.010238 CATCAACACACGCAACGCA 60.010 52.632 0.00 0.00 0.00 5.24
219 220 0.590984 CATCAACACACGCAACGCAA 60.591 50.000 0.00 0.00 0.00 4.85
220 221 0.099613 ATCAACACACGCAACGCAAA 59.900 45.000 0.00 0.00 0.00 3.68
221 222 0.522286 TCAACACACGCAACGCAAAG 60.522 50.000 0.00 0.00 0.00 2.77
222 223 0.522286 CAACACACGCAACGCAAAGA 60.522 50.000 0.00 0.00 0.00 2.52
223 224 0.380378 AACACACGCAACGCAAAGAT 59.620 45.000 0.00 0.00 0.00 2.40
224 225 0.041312 ACACACGCAACGCAAAGATC 60.041 50.000 0.00 0.00 0.00 2.75
225 226 0.725784 CACACGCAACGCAAAGATCC 60.726 55.000 0.00 0.00 0.00 3.36
226 227 0.884704 ACACGCAACGCAAAGATCCT 60.885 50.000 0.00 0.00 0.00 3.24
227 228 1.075542 CACGCAACGCAAAGATCCTA 58.924 50.000 0.00 0.00 0.00 2.94
228 229 1.076332 ACGCAACGCAAAGATCCTAC 58.924 50.000 0.00 0.00 0.00 3.18
229 230 0.373716 CGCAACGCAAAGATCCTACC 59.626 55.000 0.00 0.00 0.00 3.18
230 231 1.448985 GCAACGCAAAGATCCTACCA 58.551 50.000 0.00 0.00 0.00 3.25
231 232 1.398390 GCAACGCAAAGATCCTACCAG 59.602 52.381 0.00 0.00 0.00 4.00
232 233 2.935238 GCAACGCAAAGATCCTACCAGA 60.935 50.000 0.00 0.00 0.00 3.86
233 234 3.334691 CAACGCAAAGATCCTACCAGAA 58.665 45.455 0.00 0.00 0.00 3.02
234 235 3.252974 ACGCAAAGATCCTACCAGAAG 57.747 47.619 0.00 0.00 0.00 2.85
235 236 2.567615 ACGCAAAGATCCTACCAGAAGT 59.432 45.455 0.00 0.00 0.00 3.01
236 237 3.767673 ACGCAAAGATCCTACCAGAAGTA 59.232 43.478 0.00 0.00 0.00 2.24
237 238 4.406003 ACGCAAAGATCCTACCAGAAGTAT 59.594 41.667 0.00 0.00 0.00 2.12
238 239 5.597182 ACGCAAAGATCCTACCAGAAGTATA 59.403 40.000 0.00 0.00 0.00 1.47
239 240 6.267928 ACGCAAAGATCCTACCAGAAGTATAT 59.732 38.462 0.00 0.00 0.00 0.86
240 241 7.450634 ACGCAAAGATCCTACCAGAAGTATATA 59.549 37.037 0.00 0.00 0.00 0.86
241 242 7.755822 CGCAAAGATCCTACCAGAAGTATATAC 59.244 40.741 4.60 4.60 0.00 1.47
242 243 7.755822 GCAAAGATCCTACCAGAAGTATATACG 59.244 40.741 7.23 0.00 0.00 3.06
243 244 7.941431 AAGATCCTACCAGAAGTATATACGG 57.059 40.000 7.23 5.27 0.00 4.02
244 245 7.030234 AGATCCTACCAGAAGTATATACGGT 57.970 40.000 12.88 12.88 0.00 4.83
245 246 7.468496 AGATCCTACCAGAAGTATATACGGTT 58.532 38.462 13.36 2.02 0.00 4.44
246 247 7.949006 AGATCCTACCAGAAGTATATACGGTTT 59.051 37.037 13.36 1.38 0.00 3.27
247 248 9.236006 GATCCTACCAGAAGTATATACGGTTTA 57.764 37.037 13.36 3.48 0.00 2.01
248 249 9.765295 ATCCTACCAGAAGTATATACGGTTTAT 57.235 33.333 13.36 5.11 0.00 1.40
253 254 9.359653 ACCAGAAGTATATACGGTTTATACACT 57.640 33.333 22.32 18.47 35.77 3.55
314 315 5.117897 CGTTTTAATTCCGGACCATTTGTTG 59.882 40.000 1.83 0.00 0.00 3.33
326 327 4.870363 ACCATTTGTTGTTCGGATTTGAG 58.130 39.130 0.00 0.00 0.00 3.02
332 333 4.942852 TGTTGTTCGGATTTGAGCATTTT 58.057 34.783 0.00 0.00 0.00 1.82
337 338 4.582701 TCGGATTTGAGCATTTTGTTGT 57.417 36.364 0.00 0.00 0.00 3.32
340 341 6.321717 TCGGATTTGAGCATTTTGTTGTATC 58.678 36.000 0.00 0.00 0.00 2.24
373 374 9.477484 AATTATTGTATTGCACGGTGTTAAAAA 57.523 25.926 10.24 0.00 0.00 1.94
445 446 7.009999 TGTTTAAAATCATGATTTGCGGTATGC 59.990 33.333 29.52 16.23 40.57 3.14
459 460 3.736213 CGGTATGCATTTGTATCATCGC 58.264 45.455 3.54 0.00 0.00 4.58
490 491 1.971167 GGAACAGATGCCGCAACCA 60.971 57.895 0.00 0.00 0.00 3.67
509 510 3.813166 ACCACGTACCTCTGTTTCATTTG 59.187 43.478 0.00 0.00 0.00 2.32
514 515 1.531149 ACCTCTGTTTCATTTGACGCG 59.469 47.619 3.53 3.53 0.00 6.01
529 530 3.614143 GCGGTGCGATACTACTGC 58.386 61.111 0.00 0.00 41.41 4.40
530 531 1.226859 GCGGTGCGATACTACTGCA 60.227 57.895 0.00 0.00 45.99 4.41
531 532 0.804544 GCGGTGCGATACTACTGCAA 60.805 55.000 0.00 0.00 45.99 4.08
534 536 2.218759 CGGTGCGATACTACTGCAAATC 59.781 50.000 0.00 0.00 40.83 2.17
537 539 5.230942 GGTGCGATACTACTGCAAATCTAT 58.769 41.667 0.00 0.00 40.83 1.98
554 556 7.012989 GCAAATCTATGGGAAACTATAAACGGT 59.987 37.037 0.00 0.00 32.96 4.83
560 562 5.530712 TGGGAAACTATAAACGGTTTTTGC 58.469 37.500 11.87 4.84 36.04 3.68
609 611 5.465390 TCATTTTGCGGGAGAAGATTATACG 59.535 40.000 0.00 0.00 0.00 3.06
610 612 3.380479 TTGCGGGAGAAGATTATACGG 57.620 47.619 0.00 0.00 0.00 4.02
611 613 2.313317 TGCGGGAGAAGATTATACGGT 58.687 47.619 0.00 0.00 0.00 4.83
614 616 4.157289 TGCGGGAGAAGATTATACGGTATC 59.843 45.833 3.47 0.00 0.00 2.24
655 657 6.037098 AGTCTGACGAAGAACATTGCTATAC 58.963 40.000 1.52 0.00 36.40 1.47
656 658 5.034797 TCTGACGAAGAACATTGCTATACG 58.965 41.667 0.00 0.00 29.54 3.06
657 659 4.109766 TGACGAAGAACATTGCTATACGG 58.890 43.478 0.00 0.00 0.00 4.02
658 660 4.142337 TGACGAAGAACATTGCTATACGGA 60.142 41.667 0.00 0.00 0.00 4.69
659 661 4.110482 ACGAAGAACATTGCTATACGGAC 58.890 43.478 0.00 0.00 0.00 4.79
660 662 3.179795 CGAAGAACATTGCTATACGGACG 59.820 47.826 0.00 0.00 0.00 4.79
661 663 4.357142 GAAGAACATTGCTATACGGACGA 58.643 43.478 0.00 0.00 0.00 4.20
662 664 3.703420 AGAACATTGCTATACGGACGAC 58.297 45.455 0.00 0.00 0.00 4.34
676 678 3.909019 GGACGACGAAATTCAGATGAC 57.091 47.619 0.00 0.00 0.00 3.06
677 679 3.512680 GGACGACGAAATTCAGATGACT 58.487 45.455 0.00 0.00 0.00 3.41
678 680 3.548268 GGACGACGAAATTCAGATGACTC 59.452 47.826 0.00 0.00 0.00 3.36
679 681 3.512680 ACGACGAAATTCAGATGACTCC 58.487 45.455 0.00 0.00 0.00 3.85
680 682 3.193691 ACGACGAAATTCAGATGACTCCT 59.806 43.478 0.00 0.00 0.00 3.69
681 683 4.398358 ACGACGAAATTCAGATGACTCCTA 59.602 41.667 0.00 0.00 0.00 2.94
682 684 4.735822 CGACGAAATTCAGATGACTCCTAC 59.264 45.833 0.00 0.00 0.00 3.18
683 685 5.651530 GACGAAATTCAGATGACTCCTACA 58.348 41.667 0.00 0.00 0.00 2.74
684 686 6.227298 ACGAAATTCAGATGACTCCTACAT 57.773 37.500 0.00 0.00 0.00 2.29
685 687 6.644347 ACGAAATTCAGATGACTCCTACATT 58.356 36.000 0.00 0.00 0.00 2.71
686 688 6.536582 ACGAAATTCAGATGACTCCTACATTG 59.463 38.462 0.00 0.00 0.00 2.82
687 689 6.510799 CGAAATTCAGATGACTCCTACATTGC 60.511 42.308 0.00 0.00 0.00 3.56
688 690 5.627182 ATTCAGATGACTCCTACATTGCT 57.373 39.130 0.00 0.00 0.00 3.91
689 691 6.737720 ATTCAGATGACTCCTACATTGCTA 57.262 37.500 0.00 0.00 0.00 3.49
690 692 6.737720 TTCAGATGACTCCTACATTGCTAT 57.262 37.500 0.00 0.00 0.00 2.97
691 693 7.839680 TTCAGATGACTCCTACATTGCTATA 57.160 36.000 0.00 0.00 0.00 1.31
692 694 7.220741 TCAGATGACTCCTACATTGCTATAC 57.779 40.000 0.00 0.00 0.00 1.47
727 729 1.203523 AGATGACTCCTGAACGACAGC 59.796 52.381 8.38 0.00 44.52 4.40
762 2360 0.041047 CACATGCGTGTCCACAACAG 60.041 55.000 9.07 0.00 38.97 3.16
803 2715 1.445582 GTCGTCCACACATCGTCCC 60.446 63.158 0.00 0.00 0.00 4.46
804 2716 1.904378 TCGTCCACACATCGTCCCA 60.904 57.895 0.00 0.00 0.00 4.37
805 2717 1.005512 CGTCCACACATCGTCCCAA 60.006 57.895 0.00 0.00 0.00 4.12
808 2720 1.468520 GTCCACACATCGTCCCAATTG 59.531 52.381 0.00 0.00 0.00 2.32
818 2730 1.872237 CGTCCCAATTGTGTCGTCTGT 60.872 52.381 4.43 0.00 0.00 3.41
823 2735 3.306088 CCCAATTGTGTCGTCTGTAGAGT 60.306 47.826 4.43 0.00 0.00 3.24
830 2742 4.084171 TGTGTCGTCTGTAGAGTAGTTTCG 60.084 45.833 0.00 0.00 0.00 3.46
833 2745 3.681897 TCGTCTGTAGAGTAGTTTCGTCC 59.318 47.826 0.00 0.00 0.00 4.79
862 2774 5.061721 AGGTTGACCTGGTCTTACAAAAT 57.938 39.130 26.03 9.65 46.55 1.82
865 2777 5.278808 GGTTGACCTGGTCTTACAAAATTCC 60.279 44.000 26.03 7.75 33.15 3.01
867 2779 3.762288 GACCTGGTCTTACAAAATTCCCC 59.238 47.826 19.53 0.00 0.00 4.81
868 2780 3.141272 ACCTGGTCTTACAAAATTCCCCA 59.859 43.478 0.00 0.00 0.00 4.96
869 2781 3.509967 CCTGGTCTTACAAAATTCCCCAC 59.490 47.826 0.00 0.00 0.00 4.61
870 2782 3.502356 TGGTCTTACAAAATTCCCCACC 58.498 45.455 0.00 0.00 0.00 4.61
871 2783 3.141272 TGGTCTTACAAAATTCCCCACCT 59.859 43.478 0.00 0.00 0.00 4.00
872 2784 3.762288 GGTCTTACAAAATTCCCCACCTC 59.238 47.826 0.00 0.00 0.00 3.85
873 2785 3.762288 GTCTTACAAAATTCCCCACCTCC 59.238 47.826 0.00 0.00 0.00 4.30
874 2786 3.399644 TCTTACAAAATTCCCCACCTCCA 59.600 43.478 0.00 0.00 0.00 3.86
875 2787 2.009681 ACAAAATTCCCCACCTCCAC 57.990 50.000 0.00 0.00 0.00 4.02
876 2788 1.503347 ACAAAATTCCCCACCTCCACT 59.497 47.619 0.00 0.00 0.00 4.00
877 2789 2.171003 CAAAATTCCCCACCTCCACTC 58.829 52.381 0.00 0.00 0.00 3.51
878 2790 0.328258 AAATTCCCCACCTCCACTCG 59.672 55.000 0.00 0.00 0.00 4.18
879 2791 2.198304 AATTCCCCACCTCCACTCGC 62.198 60.000 0.00 0.00 0.00 5.03
977 2889 3.294214 TCCAACTAACCTCGTATCCTCC 58.706 50.000 0.00 0.00 0.00 4.30
1040 2952 4.047059 GTCGTCGAGCGTCCCCAA 62.047 66.667 0.00 0.00 42.13 4.12
1127 3039 3.534056 CACCCCTACGGCTACGGG 61.534 72.222 0.00 0.00 46.48 5.28
1185 3097 2.995574 AGCAACCCTACGGCGAGT 60.996 61.111 16.62 1.87 0.00 4.18
1243 3155 7.398289 TCTTTATCCATCCAAGATGAATCCT 57.602 36.000 6.15 0.00 0.00 3.24
1263 3175 0.955919 CAACTCCCCTGCTTTCGGTC 60.956 60.000 0.00 0.00 0.00 4.79
1270 3182 2.426183 CTGCTTTCGGTCGACGTCG 61.426 63.158 31.30 31.30 44.69 5.12
1314 3226 2.924290 CGAGTTCTTGGAGGAATCGAAC 59.076 50.000 0.09 0.00 35.44 3.95
1330 3242 1.481871 GAACGGATACCCTGTCCTCA 58.518 55.000 0.00 0.00 33.46 3.86
1401 3313 2.648059 GAGTCAAAGGCCATGTATGCT 58.352 47.619 5.01 1.91 0.00 3.79
1505 3417 2.894387 GCTGGCATCTGAGGCGAC 60.894 66.667 8.31 0.00 36.77 5.19
1535 3447 2.997315 CGAGGTGGAGACCAGGCA 60.997 66.667 0.00 0.00 45.98 4.75
1538 3450 0.466124 GAGGTGGAGACCAGGCATAC 59.534 60.000 0.00 0.00 45.98 2.39
1540 3452 1.291033 AGGTGGAGACCAGGCATACTA 59.709 52.381 0.00 0.00 45.98 1.82
1544 3456 4.381411 GTGGAGACCAGGCATACTATTTC 58.619 47.826 0.00 0.00 32.34 2.17
1601 3514 2.904676 CGTCCCAGATAGCGCGCTA 61.905 63.158 39.72 39.72 0.00 4.26
1623 3536 0.679002 GGTCATGGTGCTGCACTGAT 60.679 55.000 29.54 19.42 34.40 2.90
1656 3569 0.387202 ATCGCAGAGACCTTGATCGG 59.613 55.000 0.00 0.00 43.63 4.18
1683 3596 4.618489 GTGAGCATGCATTTCTGTTGTTAC 59.382 41.667 21.98 0.00 0.00 2.50
1721 3634 5.537188 CTCTAGCACTTCTGTTTTGACTCT 58.463 41.667 0.00 0.00 0.00 3.24
1973 3886 9.730705 TTTCTTGTGATCATCTCAGAGTTTTAT 57.269 29.630 0.00 0.00 33.51 1.40
2247 4262 4.881850 TCTGTCAGTGCTCGTTCTCATATA 59.118 41.667 0.00 0.00 0.00 0.86
2248 4263 5.532779 TCTGTCAGTGCTCGTTCTCATATAT 59.467 40.000 0.00 0.00 0.00 0.86
2249 4264 5.523369 TGTCAGTGCTCGTTCTCATATATG 58.477 41.667 6.36 6.36 0.00 1.78
2250 4265 5.067805 TGTCAGTGCTCGTTCTCATATATGT 59.932 40.000 12.42 0.00 0.00 2.29
2251 4266 5.400782 GTCAGTGCTCGTTCTCATATATGTG 59.599 44.000 12.42 10.23 0.00 3.21
2252 4267 5.067805 TCAGTGCTCGTTCTCATATATGTGT 59.932 40.000 12.42 0.00 0.00 3.72
2253 4268 6.262273 TCAGTGCTCGTTCTCATATATGTGTA 59.738 38.462 12.42 1.57 0.00 2.90
2254 4269 6.360947 CAGTGCTCGTTCTCATATATGTGTAC 59.639 42.308 12.42 12.25 0.00 2.90
2287 4302 1.335689 CCGGGTAACTACGCTATGCTC 60.336 57.143 0.00 0.00 37.04 4.26
2375 4390 7.169308 TCGCCTCGAAAGAAAATTATCATCTAC 59.831 37.037 0.00 0.00 41.32 2.59
2376 4391 7.169982 CGCCTCGAAAGAAAATTATCATCTACT 59.830 37.037 0.00 0.00 41.32 2.57
2377 4392 8.491950 GCCTCGAAAGAAAATTATCATCTACTC 58.508 37.037 0.00 0.00 41.32 2.59
2378 4393 8.983724 CCTCGAAAGAAAATTATCATCTACTCC 58.016 37.037 0.00 0.00 41.32 3.85
2379 4394 8.888579 TCGAAAGAAAATTATCATCTACTCCC 57.111 34.615 0.00 0.00 37.03 4.30
2380 4395 8.705594 TCGAAAGAAAATTATCATCTACTCCCT 58.294 33.333 0.00 0.00 37.03 4.20
2381 4396 8.983724 CGAAAGAAAATTATCATCTACTCCCTC 58.016 37.037 0.00 0.00 0.00 4.30
2382 4397 9.278978 GAAAGAAAATTATCATCTACTCCCTCC 57.721 37.037 0.00 0.00 0.00 4.30
2383 4398 8.574309 AAGAAAATTATCATCTACTCCCTCCT 57.426 34.615 0.00 0.00 0.00 3.69
2384 4399 8.574309 AGAAAATTATCATCTACTCCCTCCTT 57.426 34.615 0.00 0.00 0.00 3.36
2385 4400 9.008584 AGAAAATTATCATCTACTCCCTCCTTT 57.991 33.333 0.00 0.00 0.00 3.11
2386 4401 9.278978 GAAAATTATCATCTACTCCCTCCTTTC 57.721 37.037 0.00 0.00 0.00 2.62
2387 4402 6.943899 ATTATCATCTACTCCCTCCTTTCC 57.056 41.667 0.00 0.00 0.00 3.13
2388 4403 4.567987 ATCATCTACTCCCTCCTTTCCT 57.432 45.455 0.00 0.00 0.00 3.36
2389 4404 5.688220 ATCATCTACTCCCTCCTTTCCTA 57.312 43.478 0.00 0.00 0.00 2.94
2390 4405 5.483174 TCATCTACTCCCTCCTTTCCTAA 57.517 43.478 0.00 0.00 0.00 2.69
2391 4406 5.850278 TCATCTACTCCCTCCTTTCCTAAA 58.150 41.667 0.00 0.00 0.00 1.85
2392 4407 6.453476 TCATCTACTCCCTCCTTTCCTAAAT 58.547 40.000 0.00 0.00 0.00 1.40
2393 4408 7.601942 TCATCTACTCCCTCCTTTCCTAAATA 58.398 38.462 0.00 0.00 0.00 1.40
2394 4409 8.242325 TCATCTACTCCCTCCTTTCCTAAATAT 58.758 37.037 0.00 0.00 0.00 1.28
2395 4410 8.885346 CATCTACTCCCTCCTTTCCTAAATATT 58.115 37.037 0.00 0.00 0.00 1.28
2396 4411 8.871570 TCTACTCCCTCCTTTCCTAAATATTT 57.128 34.615 5.89 5.89 0.00 1.40
2397 4412 8.714906 TCTACTCCCTCCTTTCCTAAATATTTG 58.285 37.037 11.05 1.40 0.00 2.32
2398 4413 7.285340 ACTCCCTCCTTTCCTAAATATTTGT 57.715 36.000 11.05 0.00 0.00 2.83
2399 4414 7.347252 ACTCCCTCCTTTCCTAAATATTTGTC 58.653 38.462 11.05 0.00 0.00 3.18
2400 4415 7.184753 ACTCCCTCCTTTCCTAAATATTTGTCT 59.815 37.037 11.05 0.00 0.00 3.41
2401 4416 7.939781 TCCCTCCTTTCCTAAATATTTGTCTT 58.060 34.615 11.05 0.00 0.00 3.01
2402 4417 8.398743 TCCCTCCTTTCCTAAATATTTGTCTTT 58.601 33.333 11.05 0.00 0.00 2.52
2403 4418 9.035890 CCCTCCTTTCCTAAATATTTGTCTTTT 57.964 33.333 11.05 0.00 0.00 2.27
2421 4436 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2422 4437 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2437 4452 1.411246 TGGACTACCACATACGGATGC 59.589 52.381 7.78 0.00 41.77 3.91
2438 4453 1.411246 GGACTACCACATACGGATGCA 59.589 52.381 7.78 0.00 36.43 3.96
2439 4454 2.037251 GGACTACCACATACGGATGCAT 59.963 50.000 7.78 0.00 36.43 3.96
2440 4455 3.257375 GGACTACCACATACGGATGCATA 59.743 47.826 7.78 0.00 36.43 3.14
2441 4456 4.081642 GGACTACCACATACGGATGCATAT 60.082 45.833 7.78 0.00 36.43 1.78
2442 4457 5.126545 GGACTACCACATACGGATGCATATA 59.873 44.000 7.78 0.00 36.43 0.86
2443 4458 6.208988 ACTACCACATACGGATGCATATAG 57.791 41.667 7.78 7.33 36.43 1.31
2444 4459 5.949952 ACTACCACATACGGATGCATATAGA 59.050 40.000 7.78 0.00 36.43 1.98
2445 4460 5.073311 ACCACATACGGATGCATATAGAC 57.927 43.478 7.78 0.00 36.43 2.59
2446 4461 4.526650 ACCACATACGGATGCATATAGACA 59.473 41.667 7.78 0.00 36.43 3.41
2447 4462 5.187772 ACCACATACGGATGCATATAGACAT 59.812 40.000 7.78 0.00 36.43 3.06
2448 4463 6.379988 ACCACATACGGATGCATATAGACATA 59.620 38.462 7.78 0.00 36.43 2.29
2449 4464 7.069950 ACCACATACGGATGCATATAGACATAT 59.930 37.037 7.78 0.00 36.43 1.78
2450 4465 7.928167 CCACATACGGATGCATATAGACATATT 59.072 37.037 7.78 0.00 36.43 1.28
2451 4466 9.317936 CACATACGGATGCATATAGACATATTT 57.682 33.333 7.78 0.00 36.43 1.40
2452 4467 9.890629 ACATACGGATGCATATAGACATATTTT 57.109 29.630 7.78 0.00 36.43 1.82
2456 4471 9.809096 ACGGATGCATATAGACATATTTTAGAG 57.191 33.333 0.00 0.00 0.00 2.43
2457 4472 9.809096 CGGATGCATATAGACATATTTTAGAGT 57.191 33.333 0.00 0.00 0.00 3.24
2478 4493 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2479 4494 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2480 4495 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
2481 4496 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
2482 4497 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
2483 4498 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
2484 4499 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
2485 4500 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
2486 4501 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
2487 4502 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
2488 4503 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
2489 4504 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
2490 4505 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
2491 4506 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
2492 4507 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
2493 4508 7.112122 TCATTTTGCTCCATATGTAGTCACTT 58.888 34.615 1.24 0.00 0.00 3.16
2494 4509 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
2495 4510 5.420725 TTGCTCCATATGTAGTCACTTGT 57.579 39.130 1.24 0.00 0.00 3.16
2496 4511 5.420725 TGCTCCATATGTAGTCACTTGTT 57.579 39.130 1.24 0.00 0.00 2.83
2497 4512 6.538945 TGCTCCATATGTAGTCACTTGTTA 57.461 37.500 1.24 0.00 0.00 2.41
2498 4513 7.124573 TGCTCCATATGTAGTCACTTGTTAT 57.875 36.000 1.24 0.00 0.00 1.89
2499 4514 8.245195 TGCTCCATATGTAGTCACTTGTTATA 57.755 34.615 1.24 0.00 0.00 0.98
2500 4515 8.700973 TGCTCCATATGTAGTCACTTGTTATAA 58.299 33.333 1.24 0.00 0.00 0.98
2501 4516 9.712305 GCTCCATATGTAGTCACTTGTTATAAT 57.288 33.333 1.24 0.00 0.00 1.28
2529 4544 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2530 4545 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2531 4546 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2532 4547 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2533 4548 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2534 4549 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2535 4550 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2536 4551 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2537 4552 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2578 4593 6.487331 AGCAGAGTAGCGTATACTAACATTCT 59.513 38.462 0.56 0.00 40.15 2.40
2670 4685 2.046023 CCGCAGTGAATGAGGCCA 60.046 61.111 5.01 0.00 42.35 5.36
2677 4692 0.394352 GTGAATGAGGCCACGGGATT 60.394 55.000 5.01 0.00 0.00 3.01
2682 4697 1.224592 GAGGCCACGGGATTGACAT 59.775 57.895 5.01 0.00 0.00 3.06
2690 4705 2.423538 CACGGGATTGACATTCCTTTCC 59.576 50.000 14.47 0.00 33.53 3.13
2726 4741 4.552767 CTGAAAGATTGGTGTTCGTCACAC 60.553 45.833 10.93 10.93 46.86 3.82
2938 4953 2.294233 TGCAGCTGAAAGATTGGTGTTC 59.706 45.455 20.43 0.00 34.07 3.18
2965 4980 9.415544 GTCAGATTGTAAATTTGAGCAATTCTT 57.584 29.630 14.32 5.85 33.60 2.52
2987 5004 3.281727 AGCACTTCTGTTTTGACTCCA 57.718 42.857 0.00 0.00 0.00 3.86
2988 5005 3.620488 AGCACTTCTGTTTTGACTCCAA 58.380 40.909 0.00 0.00 0.00 3.53
3161 5179 2.545946 GCTGGAACTGACTGAAACAGAC 59.454 50.000 5.76 0.31 38.55 3.51
3312 5330 3.896888 AGACATGCCAAATGGTTCTTGAA 59.103 39.130 0.71 0.00 37.57 2.69
3477 5496 5.811399 TTTCTACTGTGTGGAAACAACAG 57.189 39.130 5.38 0.67 46.09 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.171448 CCTCTCCAACATCCAACCCTAG 59.829 54.545 0.00 0.00 0.00 3.02
1 2 2.196595 CCTCTCCAACATCCAACCCTA 58.803 52.381 0.00 0.00 0.00 3.53
3 4 0.991920 TCCTCTCCAACATCCAACCC 59.008 55.000 0.00 0.00 0.00 4.11
4 5 2.040412 ACTTCCTCTCCAACATCCAACC 59.960 50.000 0.00 0.00 0.00 3.77
5 6 3.425162 ACTTCCTCTCCAACATCCAAC 57.575 47.619 0.00 0.00 0.00 3.77
7 8 3.107601 CCTACTTCCTCTCCAACATCCA 58.892 50.000 0.00 0.00 0.00 3.41
8 9 2.158885 GCCTACTTCCTCTCCAACATCC 60.159 54.545 0.00 0.00 0.00 3.51
9 10 2.769095 AGCCTACTTCCTCTCCAACATC 59.231 50.000 0.00 0.00 0.00 3.06
10 11 2.769095 GAGCCTACTTCCTCTCCAACAT 59.231 50.000 0.00 0.00 0.00 2.71
11 12 2.180276 GAGCCTACTTCCTCTCCAACA 58.820 52.381 0.00 0.00 0.00 3.33
12 13 2.167487 CAGAGCCTACTTCCTCTCCAAC 59.833 54.545 0.00 0.00 36.33 3.77
13 14 2.043115 TCAGAGCCTACTTCCTCTCCAA 59.957 50.000 0.00 0.00 36.33 3.53
14 15 1.641192 TCAGAGCCTACTTCCTCTCCA 59.359 52.381 0.00 0.00 36.33 3.86
15 16 2.445682 TCAGAGCCTACTTCCTCTCC 57.554 55.000 0.00 0.00 36.33 3.71
16 17 4.279922 GGTATTCAGAGCCTACTTCCTCTC 59.720 50.000 0.00 0.00 36.33 3.20
17 18 4.219919 GGTATTCAGAGCCTACTTCCTCT 58.780 47.826 0.00 0.00 38.91 3.69
18 19 3.961408 TGGTATTCAGAGCCTACTTCCTC 59.039 47.826 0.00 0.00 0.00 3.71
19 20 3.995636 TGGTATTCAGAGCCTACTTCCT 58.004 45.455 0.00 0.00 0.00 3.36
20 21 4.345257 TCATGGTATTCAGAGCCTACTTCC 59.655 45.833 0.00 0.00 0.00 3.46
21 22 5.537300 TCATGGTATTCAGAGCCTACTTC 57.463 43.478 0.00 0.00 0.00 3.01
22 23 5.957771 TTCATGGTATTCAGAGCCTACTT 57.042 39.130 0.00 0.00 0.00 2.24
23 24 6.294473 CAATTCATGGTATTCAGAGCCTACT 58.706 40.000 0.00 0.00 0.00 2.57
24 25 5.471456 CCAATTCATGGTATTCAGAGCCTAC 59.529 44.000 0.00 0.00 44.85 3.18
25 26 5.624159 CCAATTCATGGTATTCAGAGCCTA 58.376 41.667 0.00 0.00 44.85 3.93
26 27 4.467769 CCAATTCATGGTATTCAGAGCCT 58.532 43.478 0.00 0.00 44.85 4.58
27 28 4.843220 CCAATTCATGGTATTCAGAGCC 57.157 45.455 0.00 0.00 44.85 4.70
35 36 9.174799 GCATACGCTTCATCCAATTCATGGTAT 62.175 40.741 0.00 0.00 42.08 2.73
36 37 7.949365 GCATACGCTTCATCCAATTCATGGTA 61.949 42.308 0.00 0.00 42.08 3.25
37 38 7.225427 GCATACGCTTCATCCAATTCATGGT 62.225 44.000 0.00 0.00 42.08 3.55
38 39 4.849780 GCATACGCTTCATCCAATTCATGG 60.850 45.833 0.00 0.00 42.52 3.66
39 40 4.224433 GCATACGCTTCATCCAATTCATG 58.776 43.478 0.00 0.00 34.30 3.07
40 41 3.884693 TGCATACGCTTCATCCAATTCAT 59.115 39.130 0.00 0.00 39.64 2.57
41 42 3.277715 TGCATACGCTTCATCCAATTCA 58.722 40.909 0.00 0.00 39.64 2.57
42 43 3.969117 TGCATACGCTTCATCCAATTC 57.031 42.857 0.00 0.00 39.64 2.17
43 44 4.023450 CAGATGCATACGCTTCATCCAATT 60.023 41.667 0.00 0.00 43.12 2.32
44 45 3.501062 CAGATGCATACGCTTCATCCAAT 59.499 43.478 0.00 0.00 43.12 3.16
45 46 2.874086 CAGATGCATACGCTTCATCCAA 59.126 45.455 0.00 0.00 43.12 3.53
46 47 2.486918 CAGATGCATACGCTTCATCCA 58.513 47.619 0.00 0.00 43.12 3.41
47 48 1.802960 CCAGATGCATACGCTTCATCC 59.197 52.381 0.00 0.00 43.12 3.51
48 49 1.196354 GCCAGATGCATACGCTTCATC 59.804 52.381 0.00 0.00 43.12 2.92
49 50 1.233019 GCCAGATGCATACGCTTCAT 58.767 50.000 0.00 0.00 43.12 2.57
50 51 2.694065 GCCAGATGCATACGCTTCA 58.306 52.632 0.00 0.00 43.12 3.02
61 62 2.572095 TAACGCGTCCCTGCCAGATG 62.572 60.000 14.44 0.00 0.00 2.90
62 63 2.355986 TAACGCGTCCCTGCCAGAT 61.356 57.895 14.44 0.00 0.00 2.90
63 64 2.992689 TAACGCGTCCCTGCCAGA 60.993 61.111 14.44 0.00 0.00 3.86
64 65 2.813908 GTAACGCGTCCCTGCCAG 60.814 66.667 14.44 0.00 0.00 4.85
65 66 4.728102 CGTAACGCGTCCCTGCCA 62.728 66.667 14.44 0.00 35.54 4.92
75 76 5.640218 TTTGGCTATATAACACGTAACGC 57.360 39.130 0.00 0.00 0.00 4.84
96 97 5.221986 ACTCCCGTATCCCTGTAAACTTTTT 60.222 40.000 0.00 0.00 0.00 1.94
97 98 4.287845 ACTCCCGTATCCCTGTAAACTTTT 59.712 41.667 0.00 0.00 0.00 2.27
98 99 3.842436 ACTCCCGTATCCCTGTAAACTTT 59.158 43.478 0.00 0.00 0.00 2.66
99 100 3.447950 ACTCCCGTATCCCTGTAAACTT 58.552 45.455 0.00 0.00 0.00 2.66
100 101 3.111741 ACTCCCGTATCCCTGTAAACT 57.888 47.619 0.00 0.00 0.00 2.66
101 102 3.900966 AACTCCCGTATCCCTGTAAAC 57.099 47.619 0.00 0.00 0.00 2.01
102 103 3.962718 CCTAACTCCCGTATCCCTGTAAA 59.037 47.826 0.00 0.00 0.00 2.01
103 104 3.052642 ACCTAACTCCCGTATCCCTGTAA 60.053 47.826 0.00 0.00 0.00 2.41
104 105 2.515429 ACCTAACTCCCGTATCCCTGTA 59.485 50.000 0.00 0.00 0.00 2.74
105 106 1.290130 ACCTAACTCCCGTATCCCTGT 59.710 52.381 0.00 0.00 0.00 4.00
106 107 2.083628 ACCTAACTCCCGTATCCCTG 57.916 55.000 0.00 0.00 0.00 4.45
107 108 2.862850 AACCTAACTCCCGTATCCCT 57.137 50.000 0.00 0.00 0.00 4.20
108 109 3.299503 TGTAACCTAACTCCCGTATCCC 58.700 50.000 0.00 0.00 0.00 3.85
109 110 4.320788 CGATGTAACCTAACTCCCGTATCC 60.321 50.000 0.00 0.00 0.00 2.59
110 111 4.791974 CGATGTAACCTAACTCCCGTATC 58.208 47.826 0.00 0.00 0.00 2.24
111 112 3.005155 GCGATGTAACCTAACTCCCGTAT 59.995 47.826 0.00 0.00 0.00 3.06
112 113 2.358898 GCGATGTAACCTAACTCCCGTA 59.641 50.000 0.00 0.00 0.00 4.02
113 114 1.135721 GCGATGTAACCTAACTCCCGT 59.864 52.381 0.00 0.00 0.00 5.28
114 115 1.135527 TGCGATGTAACCTAACTCCCG 59.864 52.381 0.00 0.00 0.00 5.14
115 116 2.973694 TGCGATGTAACCTAACTCCC 57.026 50.000 0.00 0.00 0.00 4.30
116 117 3.131396 CCATGCGATGTAACCTAACTCC 58.869 50.000 0.00 0.00 0.00 3.85
117 118 4.054780 TCCATGCGATGTAACCTAACTC 57.945 45.455 0.00 0.00 0.00 3.01
118 119 4.689612 ATCCATGCGATGTAACCTAACT 57.310 40.909 0.00 0.00 0.00 2.24
119 120 4.814234 TCAATCCATGCGATGTAACCTAAC 59.186 41.667 0.00 0.00 0.00 2.34
120 121 4.814234 GTCAATCCATGCGATGTAACCTAA 59.186 41.667 0.00 0.00 0.00 2.69
121 122 4.377021 GTCAATCCATGCGATGTAACCTA 58.623 43.478 0.00 0.00 0.00 3.08
122 123 3.206150 GTCAATCCATGCGATGTAACCT 58.794 45.455 0.00 0.00 0.00 3.50
123 124 2.290641 GGTCAATCCATGCGATGTAACC 59.709 50.000 0.00 0.00 35.97 2.85
124 125 2.290641 GGGTCAATCCATGCGATGTAAC 59.709 50.000 0.00 0.00 38.11 2.50
125 126 2.172505 AGGGTCAATCCATGCGATGTAA 59.827 45.455 0.00 0.00 38.11 2.41
126 127 1.768275 AGGGTCAATCCATGCGATGTA 59.232 47.619 0.00 0.00 38.11 2.29
127 128 0.548031 AGGGTCAATCCATGCGATGT 59.452 50.000 0.00 0.00 38.11 3.06
128 129 1.233019 GAGGGTCAATCCATGCGATG 58.767 55.000 0.00 0.00 38.11 3.84
129 130 0.839277 TGAGGGTCAATCCATGCGAT 59.161 50.000 0.00 0.00 38.11 4.58
130 131 0.107703 GTGAGGGTCAATCCATGCGA 60.108 55.000 0.00 0.00 38.11 5.10
131 132 1.431488 CGTGAGGGTCAATCCATGCG 61.431 60.000 0.00 0.00 38.11 4.73
132 133 1.718757 GCGTGAGGGTCAATCCATGC 61.719 60.000 0.00 0.00 38.11 4.06
133 134 0.392863 TGCGTGAGGGTCAATCCATG 60.393 55.000 0.00 0.00 38.11 3.66
134 135 0.327924 TTGCGTGAGGGTCAATCCAT 59.672 50.000 0.00 0.00 38.11 3.41
135 136 0.321564 CTTGCGTGAGGGTCAATCCA 60.322 55.000 0.00 0.00 38.11 3.41
136 137 1.648467 GCTTGCGTGAGGGTCAATCC 61.648 60.000 0.00 0.00 0.00 3.01
137 138 0.674895 AGCTTGCGTGAGGGTCAATC 60.675 55.000 0.00 0.00 0.00 2.67
138 139 0.613260 TAGCTTGCGTGAGGGTCAAT 59.387 50.000 0.00 0.00 0.00 2.57
139 140 0.613260 ATAGCTTGCGTGAGGGTCAA 59.387 50.000 0.00 0.00 0.00 3.18
140 141 1.136305 GTATAGCTTGCGTGAGGGTCA 59.864 52.381 0.00 0.00 0.00 4.02
141 142 1.136305 TGTATAGCTTGCGTGAGGGTC 59.864 52.381 0.00 0.00 0.00 4.46
142 143 1.137086 CTGTATAGCTTGCGTGAGGGT 59.863 52.381 0.00 0.00 0.00 4.34
143 144 1.137086 ACTGTATAGCTTGCGTGAGGG 59.863 52.381 0.00 0.00 0.00 4.30
144 145 2.159240 TCACTGTATAGCTTGCGTGAGG 60.159 50.000 0.00 0.00 0.00 3.86
145 146 3.150848 TCACTGTATAGCTTGCGTGAG 57.849 47.619 0.00 0.00 0.00 3.51
146 147 3.801114 ATCACTGTATAGCTTGCGTGA 57.199 42.857 0.00 0.00 36.06 4.35
147 148 5.281727 TCTTATCACTGTATAGCTTGCGTG 58.718 41.667 0.00 0.00 0.00 5.34
148 149 5.515797 TCTTATCACTGTATAGCTTGCGT 57.484 39.130 0.00 0.00 0.00 5.24
149 150 8.428536 GTTATTCTTATCACTGTATAGCTTGCG 58.571 37.037 0.00 0.00 0.00 4.85
150 151 8.713271 GGTTATTCTTATCACTGTATAGCTTGC 58.287 37.037 0.00 0.00 0.00 4.01
151 152 9.209175 GGGTTATTCTTATCACTGTATAGCTTG 57.791 37.037 0.00 0.00 0.00 4.01
152 153 9.160412 AGGGTTATTCTTATCACTGTATAGCTT 57.840 33.333 0.00 0.00 0.00 3.74
153 154 8.728596 AGGGTTATTCTTATCACTGTATAGCT 57.271 34.615 0.00 0.00 0.00 3.32
157 158 9.139734 TCGTTAGGGTTATTCTTATCACTGTAT 57.860 33.333 0.00 0.00 0.00 2.29
158 159 8.408601 GTCGTTAGGGTTATTCTTATCACTGTA 58.591 37.037 0.00 0.00 0.00 2.74
159 160 7.263496 GTCGTTAGGGTTATTCTTATCACTGT 58.737 38.462 0.00 0.00 0.00 3.55
160 161 6.700520 GGTCGTTAGGGTTATTCTTATCACTG 59.299 42.308 0.00 0.00 0.00 3.66
161 162 6.610425 AGGTCGTTAGGGTTATTCTTATCACT 59.390 38.462 0.00 0.00 0.00 3.41
162 163 6.814043 AGGTCGTTAGGGTTATTCTTATCAC 58.186 40.000 0.00 0.00 0.00 3.06
163 164 8.416329 GTTAGGTCGTTAGGGTTATTCTTATCA 58.584 37.037 0.00 0.00 0.00 2.15
164 165 8.416329 TGTTAGGTCGTTAGGGTTATTCTTATC 58.584 37.037 0.00 0.00 0.00 1.75
165 166 8.310122 TGTTAGGTCGTTAGGGTTATTCTTAT 57.690 34.615 0.00 0.00 0.00 1.73
166 167 7.716799 TGTTAGGTCGTTAGGGTTATTCTTA 57.283 36.000 0.00 0.00 0.00 2.10
167 168 6.610075 TGTTAGGTCGTTAGGGTTATTCTT 57.390 37.500 0.00 0.00 0.00 2.52
168 169 6.401394 GTTGTTAGGTCGTTAGGGTTATTCT 58.599 40.000 0.00 0.00 0.00 2.40
169 170 5.582269 GGTTGTTAGGTCGTTAGGGTTATTC 59.418 44.000 0.00 0.00 0.00 1.75
170 171 5.491070 GGTTGTTAGGTCGTTAGGGTTATT 58.509 41.667 0.00 0.00 0.00 1.40
171 172 4.080919 GGGTTGTTAGGTCGTTAGGGTTAT 60.081 45.833 0.00 0.00 0.00 1.89
172 173 3.260632 GGGTTGTTAGGTCGTTAGGGTTA 59.739 47.826 0.00 0.00 0.00 2.85
173 174 2.038952 GGGTTGTTAGGTCGTTAGGGTT 59.961 50.000 0.00 0.00 0.00 4.11
174 175 1.625315 GGGTTGTTAGGTCGTTAGGGT 59.375 52.381 0.00 0.00 0.00 4.34
175 176 1.404583 CGGGTTGTTAGGTCGTTAGGG 60.405 57.143 0.00 0.00 0.00 3.53
176 177 1.545582 TCGGGTTGTTAGGTCGTTAGG 59.454 52.381 0.00 0.00 0.00 2.69
177 178 3.515330 ATCGGGTTGTTAGGTCGTTAG 57.485 47.619 0.00 0.00 0.00 2.34
178 179 3.959535 AATCGGGTTGTTAGGTCGTTA 57.040 42.857 0.00 0.00 0.00 3.18
179 180 2.845363 AATCGGGTTGTTAGGTCGTT 57.155 45.000 0.00 0.00 0.00 3.85
180 181 2.562298 TGTAATCGGGTTGTTAGGTCGT 59.438 45.455 0.00 0.00 0.00 4.34
181 182 3.235157 TGTAATCGGGTTGTTAGGTCG 57.765 47.619 0.00 0.00 0.00 4.79
195 196 3.152983 CGTTGCGTGTGTTGATGTAATC 58.847 45.455 0.00 0.00 45.83 1.75
196 197 2.664424 GCGTTGCGTGTGTTGATGTAAT 60.664 45.455 0.00 0.00 0.00 1.89
197 198 1.333347 GCGTTGCGTGTGTTGATGTAA 60.333 47.619 0.00 0.00 0.00 2.41
198 199 0.233590 GCGTTGCGTGTGTTGATGTA 59.766 50.000 0.00 0.00 0.00 2.29
199 200 1.010125 GCGTTGCGTGTGTTGATGT 60.010 52.632 0.00 0.00 0.00 3.06
200 201 0.590984 TTGCGTTGCGTGTGTTGATG 60.591 50.000 0.00 0.00 0.00 3.07
201 202 0.099613 TTTGCGTTGCGTGTGTTGAT 59.900 45.000 0.00 0.00 0.00 2.57
202 203 0.522286 CTTTGCGTTGCGTGTGTTGA 60.522 50.000 0.00 0.00 0.00 3.18
203 204 0.522286 TCTTTGCGTTGCGTGTGTTG 60.522 50.000 0.00 0.00 0.00 3.33
204 205 0.380378 ATCTTTGCGTTGCGTGTGTT 59.620 45.000 0.00 0.00 0.00 3.32
205 206 0.041312 GATCTTTGCGTTGCGTGTGT 60.041 50.000 0.00 0.00 0.00 3.72
206 207 0.725784 GGATCTTTGCGTTGCGTGTG 60.726 55.000 0.00 0.00 0.00 3.82
207 208 0.884704 AGGATCTTTGCGTTGCGTGT 60.885 50.000 0.00 0.00 0.00 4.49
208 209 1.075542 TAGGATCTTTGCGTTGCGTG 58.924 50.000 0.00 0.00 0.00 5.34
209 210 1.076332 GTAGGATCTTTGCGTTGCGT 58.924 50.000 0.00 0.00 0.00 5.24
210 211 0.373716 GGTAGGATCTTTGCGTTGCG 59.626 55.000 0.00 0.00 0.00 4.85
211 212 1.398390 CTGGTAGGATCTTTGCGTTGC 59.602 52.381 0.00 0.00 0.00 4.17
212 213 2.972625 TCTGGTAGGATCTTTGCGTTG 58.027 47.619 0.00 0.00 0.00 4.10
213 214 3.008049 ACTTCTGGTAGGATCTTTGCGTT 59.992 43.478 0.00 0.00 0.00 4.84
214 215 2.567615 ACTTCTGGTAGGATCTTTGCGT 59.432 45.455 0.00 0.00 0.00 5.24
215 216 3.252974 ACTTCTGGTAGGATCTTTGCG 57.747 47.619 0.00 0.00 0.00 4.85
216 217 7.755822 CGTATATACTTCTGGTAGGATCTTTGC 59.244 40.741 11.05 0.00 33.51 3.68
217 218 8.244802 CCGTATATACTTCTGGTAGGATCTTTG 58.755 40.741 11.05 0.00 33.51 2.77
218 219 7.949006 ACCGTATATACTTCTGGTAGGATCTTT 59.051 37.037 11.05 0.00 33.51 2.52
219 220 7.468496 ACCGTATATACTTCTGGTAGGATCTT 58.532 38.462 11.05 0.00 33.51 2.40
220 221 7.030234 ACCGTATATACTTCTGGTAGGATCT 57.970 40.000 11.05 0.00 33.51 2.75
221 222 7.700022 AACCGTATATACTTCTGGTAGGATC 57.300 40.000 11.05 0.00 33.51 3.36
222 223 9.765295 ATAAACCGTATATACTTCTGGTAGGAT 57.235 33.333 11.05 3.32 33.51 3.24
227 228 9.359653 AGTGTATAAACCGTATATACTTCTGGT 57.640 33.333 11.05 7.68 37.22 4.00
266 267 9.811995 ACGCTTGTTCTGTTAGATATAATTGTA 57.188 29.630 0.00 0.00 0.00 2.41
267 268 8.718102 ACGCTTGTTCTGTTAGATATAATTGT 57.282 30.769 0.00 0.00 0.00 2.71
268 269 9.988350 AAACGCTTGTTCTGTTAGATATAATTG 57.012 29.630 0.00 0.00 33.81 2.32
275 276 8.021396 GGAATTAAAACGCTTGTTCTGTTAGAT 58.979 33.333 0.00 0.00 33.81 1.98
276 277 7.357303 GGAATTAAAACGCTTGTTCTGTTAGA 58.643 34.615 0.00 0.00 33.81 2.10
277 278 6.302313 CGGAATTAAAACGCTTGTTCTGTTAG 59.698 38.462 0.00 0.00 33.81 2.34
278 279 6.137415 CGGAATTAAAACGCTTGTTCTGTTA 58.863 36.000 0.00 0.00 33.81 2.41
279 280 4.973663 CGGAATTAAAACGCTTGTTCTGTT 59.026 37.500 0.00 0.00 33.81 3.16
280 281 4.533222 CGGAATTAAAACGCTTGTTCTGT 58.467 39.130 0.00 0.00 33.81 3.41
281 282 3.911964 CCGGAATTAAAACGCTTGTTCTG 59.088 43.478 0.00 0.00 33.81 3.02
282 283 3.816523 TCCGGAATTAAAACGCTTGTTCT 59.183 39.130 0.00 0.00 33.81 3.01
283 284 3.910170 GTCCGGAATTAAAACGCTTGTTC 59.090 43.478 5.23 0.00 33.81 3.18
284 285 3.304861 GGTCCGGAATTAAAACGCTTGTT 60.305 43.478 5.23 0.00 37.43 2.83
285 286 2.227149 GGTCCGGAATTAAAACGCTTGT 59.773 45.455 5.23 0.00 0.00 3.16
286 287 2.226912 TGGTCCGGAATTAAAACGCTTG 59.773 45.455 5.23 0.00 0.00 4.01
287 288 2.506444 TGGTCCGGAATTAAAACGCTT 58.494 42.857 5.23 0.00 0.00 4.68
288 289 2.188062 TGGTCCGGAATTAAAACGCT 57.812 45.000 5.23 0.00 0.00 5.07
289 290 3.497297 AATGGTCCGGAATTAAAACGC 57.503 42.857 5.23 0.00 0.00 4.84
290 291 4.800784 ACAAATGGTCCGGAATTAAAACG 58.199 39.130 5.23 0.00 0.00 3.60
291 292 5.986741 ACAACAAATGGTCCGGAATTAAAAC 59.013 36.000 5.23 0.00 0.00 2.43
314 315 4.744631 ACAACAAAATGCTCAAATCCGAAC 59.255 37.500 0.00 0.00 0.00 3.95
337 338 9.196552 CGTGCAATACAATAATTCTCTCAGATA 57.803 33.333 0.00 0.00 0.00 1.98
340 341 6.258727 ACCGTGCAATACAATAATTCTCTCAG 59.741 38.462 0.00 0.00 0.00 3.35
445 446 4.604368 CGATTTCACGCGATGATACAAATG 59.396 41.667 15.93 0.00 37.11 2.32
451 452 2.785713 TCCGATTTCACGCGATGATA 57.214 45.000 15.93 8.67 37.11 2.15
457 458 0.026285 GTTCCATCCGATTTCACGCG 59.974 55.000 3.53 3.53 0.00 6.01
459 460 2.616960 TCTGTTCCATCCGATTTCACG 58.383 47.619 0.00 0.00 0.00 4.35
490 491 3.739300 CGTCAAATGAAACAGAGGTACGT 59.261 43.478 0.00 0.00 0.00 3.57
514 515 3.458189 AGATTTGCAGTAGTATCGCACC 58.542 45.455 0.00 0.00 34.87 5.01
520 521 7.806180 AGTTTCCCATAGATTTGCAGTAGTAT 58.194 34.615 0.00 0.00 0.00 2.12
525 526 8.903820 GTTTATAGTTTCCCATAGATTTGCAGT 58.096 33.333 0.00 0.00 0.00 4.40
526 527 8.070171 CGTTTATAGTTTCCCATAGATTTGCAG 58.930 37.037 0.00 0.00 0.00 4.41
527 528 7.012894 CCGTTTATAGTTTCCCATAGATTTGCA 59.987 37.037 0.00 0.00 0.00 4.08
528 529 7.012989 ACCGTTTATAGTTTCCCATAGATTTGC 59.987 37.037 0.00 0.00 0.00 3.68
529 530 8.446599 ACCGTTTATAGTTTCCCATAGATTTG 57.553 34.615 0.00 0.00 0.00 2.32
530 531 9.470399 AAACCGTTTATAGTTTCCCATAGATTT 57.530 29.630 0.00 0.00 30.48 2.17
531 532 9.470399 AAAACCGTTTATAGTTTCCCATAGATT 57.530 29.630 0.00 0.00 35.19 2.40
534 536 7.486870 GCAAAAACCGTTTATAGTTTCCCATAG 59.513 37.037 0.00 0.00 35.19 2.23
537 539 5.530712 GCAAAAACCGTTTATAGTTTCCCA 58.469 37.500 0.00 0.00 35.19 4.37
614 616 8.722394 TCGTCAGACTATATATTAGAGCAACAG 58.278 37.037 0.00 0.00 0.00 3.16
655 657 2.279136 GTCATCTGAATTTCGTCGTCCG 59.721 50.000 0.00 0.00 38.13 4.79
656 658 3.512680 AGTCATCTGAATTTCGTCGTCC 58.487 45.455 0.00 0.00 0.00 4.79
657 659 3.548268 GGAGTCATCTGAATTTCGTCGTC 59.452 47.826 0.00 0.00 0.00 4.20
658 660 3.193691 AGGAGTCATCTGAATTTCGTCGT 59.806 43.478 0.00 0.00 0.00 4.34
659 661 3.775202 AGGAGTCATCTGAATTTCGTCG 58.225 45.455 0.00 0.00 0.00 5.12
660 662 5.651530 TGTAGGAGTCATCTGAATTTCGTC 58.348 41.667 0.00 0.00 0.00 4.20
661 663 5.661056 TGTAGGAGTCATCTGAATTTCGT 57.339 39.130 0.00 0.00 0.00 3.85
662 664 6.510799 GCAATGTAGGAGTCATCTGAATTTCG 60.511 42.308 0.00 0.00 0.00 3.46
663 665 6.541641 AGCAATGTAGGAGTCATCTGAATTTC 59.458 38.462 0.00 0.00 0.00 2.17
664 666 6.421485 AGCAATGTAGGAGTCATCTGAATTT 58.579 36.000 0.00 0.00 0.00 1.82
665 667 5.999044 AGCAATGTAGGAGTCATCTGAATT 58.001 37.500 0.00 0.00 0.00 2.17
666 668 5.627182 AGCAATGTAGGAGTCATCTGAAT 57.373 39.130 0.00 0.00 0.00 2.57
667 669 6.737720 ATAGCAATGTAGGAGTCATCTGAA 57.262 37.500 0.00 0.00 0.00 3.02
668 670 6.072452 CGTATAGCAATGTAGGAGTCATCTGA 60.072 42.308 0.00 0.00 0.00 3.27
669 671 6.089476 CGTATAGCAATGTAGGAGTCATCTG 58.911 44.000 0.00 0.00 0.00 2.90
670 672 5.184096 CCGTATAGCAATGTAGGAGTCATCT 59.816 44.000 0.00 0.00 0.00 2.90
671 673 5.183331 TCCGTATAGCAATGTAGGAGTCATC 59.817 44.000 0.00 0.00 0.00 2.92
672 674 5.047943 GTCCGTATAGCAATGTAGGAGTCAT 60.048 44.000 0.00 0.00 0.00 3.06
673 675 4.277672 GTCCGTATAGCAATGTAGGAGTCA 59.722 45.833 0.00 0.00 0.00 3.41
674 676 4.613167 CGTCCGTATAGCAATGTAGGAGTC 60.613 50.000 0.00 0.00 0.00 3.36
675 677 3.252701 CGTCCGTATAGCAATGTAGGAGT 59.747 47.826 0.00 0.00 0.00 3.85
676 678 3.501062 TCGTCCGTATAGCAATGTAGGAG 59.499 47.826 0.00 0.00 0.00 3.69
677 679 3.251729 GTCGTCCGTATAGCAATGTAGGA 59.748 47.826 0.00 0.00 0.00 2.94
678 680 3.562505 GTCGTCCGTATAGCAATGTAGG 58.437 50.000 0.00 0.00 0.00 3.18
679 681 3.059393 TCGTCGTCCGTATAGCAATGTAG 60.059 47.826 0.00 0.00 37.94 2.74
680 682 2.871633 TCGTCGTCCGTATAGCAATGTA 59.128 45.455 0.00 0.00 37.94 2.29
681 683 1.672363 TCGTCGTCCGTATAGCAATGT 59.328 47.619 0.00 0.00 37.94 2.71
682 684 2.394545 TCGTCGTCCGTATAGCAATG 57.605 50.000 0.00 0.00 37.94 2.82
683 685 3.425577 TTTCGTCGTCCGTATAGCAAT 57.574 42.857 0.00 0.00 37.94 3.56
684 686 2.917701 TTTCGTCGTCCGTATAGCAA 57.082 45.000 0.00 0.00 37.94 3.91
685 687 3.181498 TGAATTTCGTCGTCCGTATAGCA 60.181 43.478 0.00 0.00 37.94 3.49
686 688 3.365832 TGAATTTCGTCGTCCGTATAGC 58.634 45.455 0.00 0.00 37.94 2.97
687 689 4.840911 TCTGAATTTCGTCGTCCGTATAG 58.159 43.478 0.00 0.00 37.94 1.31
688 690 4.880886 TCTGAATTTCGTCGTCCGTATA 57.119 40.909 0.00 0.00 37.94 1.47
689 691 3.770263 TCTGAATTTCGTCGTCCGTAT 57.230 42.857 0.00 0.00 37.94 3.06
690 692 3.127376 TCATCTGAATTTCGTCGTCCGTA 59.873 43.478 0.00 0.00 37.94 4.02
691 693 2.094906 TCATCTGAATTTCGTCGTCCGT 60.095 45.455 0.00 0.00 37.94 4.69
692 694 2.279136 GTCATCTGAATTTCGTCGTCCG 59.721 50.000 0.00 0.00 38.13 4.79
727 729 2.279851 TGTGCGGCCGGATTATCG 60.280 61.111 29.38 0.00 0.00 2.92
754 2352 2.639286 GCCGTTGCTCTGTTGTGG 59.361 61.111 0.00 0.00 33.53 4.17
803 2715 5.700846 ACTACTCTACAGACGACACAATTG 58.299 41.667 3.24 3.24 0.00 2.32
804 2716 5.961396 ACTACTCTACAGACGACACAATT 57.039 39.130 0.00 0.00 0.00 2.32
805 2717 5.961396 AACTACTCTACAGACGACACAAT 57.039 39.130 0.00 0.00 0.00 2.71
808 2720 4.084118 ACGAAACTACTCTACAGACGACAC 60.084 45.833 0.00 0.00 0.00 3.67
830 2742 0.033090 AGGTCAACCTTTCGTCGGAC 59.967 55.000 0.00 0.00 46.09 4.79
833 2745 0.249741 ACCAGGTCAACCTTTCGTCG 60.250 55.000 0.00 0.00 46.09 5.12
849 2761 3.141272 AGGTGGGGAATTTTGTAAGACCA 59.859 43.478 0.00 0.00 0.00 4.02
856 2768 1.503347 AGTGGAGGTGGGGAATTTTGT 59.497 47.619 0.00 0.00 0.00 2.83
857 2769 2.171003 GAGTGGAGGTGGGGAATTTTG 58.829 52.381 0.00 0.00 0.00 2.44
860 2772 1.991230 CGAGTGGAGGTGGGGAATT 59.009 57.895 0.00 0.00 0.00 2.17
862 2774 3.319198 GCGAGTGGAGGTGGGGAA 61.319 66.667 0.00 0.00 0.00 3.97
865 2777 3.625897 TGTGCGAGTGGAGGTGGG 61.626 66.667 0.00 0.00 0.00 4.61
867 2779 1.227527 TTGTGTGCGAGTGGAGGTG 60.228 57.895 0.00 0.00 0.00 4.00
868 2780 1.227556 GTTGTGTGCGAGTGGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
869 2781 1.069765 AGTTGTGTGCGAGTGGAGG 59.930 57.895 0.00 0.00 0.00 4.30
870 2782 1.835483 GCAGTTGTGTGCGAGTGGAG 61.835 60.000 0.00 0.00 32.74 3.86
871 2783 1.887242 GCAGTTGTGTGCGAGTGGA 60.887 57.895 0.00 0.00 32.74 4.02
872 2784 2.633657 GCAGTTGTGTGCGAGTGG 59.366 61.111 0.00 0.00 32.74 4.00
878 2790 2.353839 CGGCAAGCAGTTGTGTGC 60.354 61.111 0.00 0.00 44.35 4.57
927 2839 1.154188 GAGTGCTCGTCGGTCTGAC 60.154 63.158 1.28 1.28 44.53 3.51
930 2842 3.432588 CGGAGTGCTCGTCGGTCT 61.433 66.667 0.00 0.00 0.00 3.85
962 2874 0.106569 TGCGGGAGGATACGAGGTTA 60.107 55.000 0.00 0.00 46.39 2.85
1092 3004 4.559063 CTCTCCAGGGGCGCCATG 62.559 72.222 30.85 25.10 34.81 3.66
1243 3155 1.374947 CCGAAAGCAGGGGAGTTGA 59.625 57.895 0.00 0.00 0.00 3.18
1263 3175 4.379143 TGCAGGTCGTCGACGTCG 62.379 66.667 34.40 31.30 40.80 5.12
1314 3226 1.734137 CGTGAGGACAGGGTATCCG 59.266 63.158 0.00 0.00 41.52 4.18
1401 3313 2.735772 GGCCGCCTTCAGATCTCCA 61.736 63.158 0.71 0.00 0.00 3.86
1455 3367 2.517450 CGCGAGATTCACCGGAAGC 61.517 63.158 9.46 0.00 39.70 3.86
1482 3394 0.255318 CCTCAGATGCCAGCCTCTTT 59.745 55.000 0.00 0.00 0.00 2.52
1601 3514 1.601759 GTGCAGCACCATGACCAGT 60.602 57.895 15.27 0.00 0.00 4.00
1623 3536 2.989639 CGATGGAGGGGCAACTCA 59.010 61.111 10.07 0.00 42.85 3.41
1656 3569 0.815734 AGAAATGCATGCTCACCTGC 59.184 50.000 20.33 1.99 38.87 4.85
1697 3610 4.061596 AGTCAAAACAGAAGTGCTAGAGC 58.938 43.478 0.00 0.00 42.50 4.09
1708 3621 4.379394 GCACAACACAAGAGTCAAAACAGA 60.379 41.667 0.00 0.00 0.00 3.41
1721 3634 4.320129 CGTTTATGATCCAGCACAACACAA 60.320 41.667 0.00 0.00 0.00 3.33
1973 3886 2.480416 CCTACAACGCAAAGGCACAAAA 60.480 45.455 0.00 0.00 41.24 2.44
2161 4176 2.040544 AAAGCGCTTCATCGGGTGG 61.041 57.895 25.24 0.00 0.00 4.61
2247 4262 1.924524 GCGACAATGCGTAGTACACAT 59.075 47.619 0.38 0.00 0.00 3.21
2248 4263 1.342555 GCGACAATGCGTAGTACACA 58.657 50.000 0.38 0.00 0.00 3.72
2249 4264 0.643820 GGCGACAATGCGTAGTACAC 59.356 55.000 0.38 0.00 35.06 2.90
2250 4265 0.799152 CGGCGACAATGCGTAGTACA 60.799 55.000 0.00 0.00 35.06 2.90
2251 4266 1.477030 CCGGCGACAATGCGTAGTAC 61.477 60.000 9.30 0.00 35.06 2.73
2252 4267 1.226745 CCGGCGACAATGCGTAGTA 60.227 57.895 9.30 0.00 35.06 1.82
2253 4268 2.508439 CCGGCGACAATGCGTAGT 60.508 61.111 9.30 0.00 35.06 2.73
2254 4269 2.616786 TACCCGGCGACAATGCGTAG 62.617 60.000 9.30 0.00 35.06 3.51
2287 4302 3.555956 CGAGTATCCCTGAACAAATTCCG 59.444 47.826 0.00 0.00 33.49 4.30
2375 4390 7.578203 AGACAAATATTTAGGAAAGGAGGGAG 58.422 38.462 0.00 0.00 0.00 4.30
2376 4391 7.525158 AGACAAATATTTAGGAAAGGAGGGA 57.475 36.000 0.00 0.00 0.00 4.20
2377 4392 8.595362 AAAGACAAATATTTAGGAAAGGAGGG 57.405 34.615 0.00 0.00 0.00 4.30
2395 4410 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2396 4411 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2400 4415 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2401 4416 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2402 4417 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2403 4418 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2404 4419 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2405 4420 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2406 4421 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2407 4422 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2408 4423 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2409 4424 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2410 4425 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2411 4426 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2412 4427 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2413 4428 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2414 4429 4.703897 CATCCGTATGTGGTAGTCCATTT 58.296 43.478 0.00 0.00 46.20 2.32
2415 4430 3.494398 GCATCCGTATGTGGTAGTCCATT 60.494 47.826 0.00 0.00 46.20 3.16
2416 4431 2.037251 GCATCCGTATGTGGTAGTCCAT 59.963 50.000 0.00 0.00 46.20 3.41
2417 4432 1.411246 GCATCCGTATGTGGTAGTCCA 59.589 52.381 0.00 0.00 36.08 4.02
2418 4433 1.411246 TGCATCCGTATGTGGTAGTCC 59.589 52.381 0.00 0.00 35.38 3.85
2419 4434 2.882927 TGCATCCGTATGTGGTAGTC 57.117 50.000 0.00 0.00 35.38 2.59
2420 4435 5.949952 TCTATATGCATCCGTATGTGGTAGT 59.050 40.000 0.19 0.00 35.38 2.73
2421 4436 6.127730 TGTCTATATGCATCCGTATGTGGTAG 60.128 42.308 0.19 0.00 35.38 3.18
2422 4437 5.712917 TGTCTATATGCATCCGTATGTGGTA 59.287 40.000 0.19 0.00 35.38 3.25
2423 4438 4.526650 TGTCTATATGCATCCGTATGTGGT 59.473 41.667 0.19 0.00 35.38 4.16
2424 4439 5.072040 TGTCTATATGCATCCGTATGTGG 57.928 43.478 0.19 0.00 35.38 4.17
2425 4440 8.877808 AATATGTCTATATGCATCCGTATGTG 57.122 34.615 0.19 0.00 35.38 3.21
2426 4441 9.890629 AAAATATGTCTATATGCATCCGTATGT 57.109 29.630 0.19 0.00 35.38 2.29
2430 4445 9.809096 CTCTAAAATATGTCTATATGCATCCGT 57.191 33.333 0.19 0.00 30.00 4.69
2431 4446 9.809096 ACTCTAAAATATGTCTATATGCATCCG 57.191 33.333 0.19 0.00 30.00 4.18
2456 4471 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
2457 4472 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
2458 4473 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
2459 4474 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
2460 4475 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
2461 4476 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
2462 4477 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
2463 4478 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
2464 4479 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
2465 4480 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
2466 4481 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
2467 4482 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
2468 4483 6.653020 AGTGACTACATATGGAGCAAAATGA 58.347 36.000 15.30 0.00 0.00 2.57
2469 4484 6.932356 AGTGACTACATATGGAGCAAAATG 57.068 37.500 15.30 0.00 0.00 2.32
2470 4485 6.886459 ACAAGTGACTACATATGGAGCAAAAT 59.114 34.615 15.30 0.00 0.00 1.82
2471 4486 6.237901 ACAAGTGACTACATATGGAGCAAAA 58.762 36.000 15.30 0.00 0.00 2.44
2472 4487 5.804639 ACAAGTGACTACATATGGAGCAAA 58.195 37.500 15.30 0.00 0.00 3.68
2473 4488 5.420725 ACAAGTGACTACATATGGAGCAA 57.579 39.130 15.30 0.16 0.00 3.91
2474 4489 5.420725 AACAAGTGACTACATATGGAGCA 57.579 39.130 15.30 10.95 0.00 4.26
2475 4490 9.712305 ATTATAACAAGTGACTACATATGGAGC 57.288 33.333 15.30 8.47 0.00 4.70
2503 4518 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2504 4519 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2505 4520 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2506 4521 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2507 4522 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2508 4523 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2509 4524 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2510 4525 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2511 4526 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2512 4527 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2513 4528 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2514 4529 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2515 4530 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2516 4531 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2517 4532 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2518 4533 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2519 4534 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2520 4535 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
2521 4536 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
2522 4537 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
2523 4538 2.022934 CTGTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
2524 4539 2.944349 CTCTGTACTACTCCCTCCGTTC 59.056 54.545 0.00 0.00 0.00 3.95
2525 4540 2.944991 GCTCTGTACTACTCCCTCCGTT 60.945 54.545 0.00 0.00 0.00 4.44
2526 4541 1.408544 GCTCTGTACTACTCCCTCCGT 60.409 57.143 0.00 0.00 0.00 4.69
2527 4542 1.134037 AGCTCTGTACTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
2528 4543 2.303175 CAGCTCTGTACTACTCCCTCC 58.697 57.143 0.00 0.00 0.00 4.30
2529 4544 3.007473 ACAGCTCTGTACTACTCCCTC 57.993 52.381 0.00 0.00 42.90 4.30
2530 4545 3.093057 CAACAGCTCTGTACTACTCCCT 58.907 50.000 2.62 0.00 44.13 4.20
2531 4546 2.417515 GCAACAGCTCTGTACTACTCCC 60.418 54.545 2.62 0.00 44.13 4.30
2532 4547 2.231478 TGCAACAGCTCTGTACTACTCC 59.769 50.000 2.62 0.00 44.13 3.85
2533 4548 3.506810 CTGCAACAGCTCTGTACTACTC 58.493 50.000 2.62 0.00 44.13 2.59
2534 4549 3.584406 CTGCAACAGCTCTGTACTACT 57.416 47.619 2.62 0.00 44.13 2.57
2578 4593 4.623932 ACAGCTCTGTACCAAAGAATCA 57.376 40.909 0.00 0.00 42.90 2.57
2610 4625 1.216710 GCGTCTGAAGGGTCCTCTG 59.783 63.158 0.00 0.00 0.00 3.35
2670 4685 2.308866 AGGAAAGGAATGTCAATCCCGT 59.691 45.455 3.11 0.00 37.71 5.28
2677 4692 3.519510 CAGGTAGGAGGAAAGGAATGTCA 59.480 47.826 0.00 0.00 0.00 3.58
2682 4697 1.909302 CTGCAGGTAGGAGGAAAGGAA 59.091 52.381 5.57 0.00 31.00 3.36
2690 4705 1.552337 TCTTTCAGCTGCAGGTAGGAG 59.448 52.381 19.71 15.38 38.96 3.69
2726 4741 7.695618 GTGCTAGAGAATTGCTCAAATTTACAG 59.304 37.037 0.00 0.00 46.45 2.74
2938 4953 7.752239 AGAATTGCTCAAATTTACAATCTGACG 59.248 33.333 11.50 0.00 38.64 4.35
2965 4980 4.776349 TGGAGTCAAAACAGAAGTGCTAA 58.224 39.130 0.00 0.00 0.00 3.09
3010 5027 4.691175 ACATCATGCATCTACAGACTCAC 58.309 43.478 0.00 0.00 0.00 3.51
3014 5031 4.063998 TGGACATCATGCATCTACAGAC 57.936 45.455 0.00 0.00 0.00 3.51
3239 5257 8.708742 GGTTAAAATCATACAGCAAAAAGGAAC 58.291 33.333 0.00 0.00 0.00 3.62
3312 5330 4.654262 TCCACTTGTCCAGAGTCTAAGTTT 59.346 41.667 3.70 0.00 29.78 2.66
3384 5403 3.257873 CCTATACCAGCCTCATGAGTCAG 59.742 52.174 21.11 5.54 0.00 3.51
3477 5496 5.068636 AGGATGCATTAAGATGTCATGGTC 58.931 41.667 0.00 0.00 35.63 4.02
3573 5592 6.639632 TGAAAACAGGAAATCAGAAGAAGG 57.360 37.500 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.