Multiple sequence alignment - TraesCS3B01G430400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G430400 chr3B 100.000 4406 0 0 1 4406 669718324 669713919 0.000000e+00 8137.0
1 TraesCS3B01G430400 chr3B 93.966 116 7 0 4196 4311 534258158 534258273 4.530000e-40 176.0
2 TraesCS3B01G430400 chr3B 95.413 109 5 0 4203 4311 570934333 570934225 1.630000e-39 174.0
3 TraesCS3B01G430400 chr3B 97.059 102 3 0 4305 4406 165156180 165156281 5.860000e-39 172.0
4 TraesCS3B01G430400 chr3B 93.578 109 5 2 4299 4406 548082430 548082537 1.270000e-35 161.0
5 TraesCS3B01G430400 chr3D 95.760 2453 60 13 1758 4201 507491967 507489550 0.000000e+00 3914.0
6 TraesCS3B01G430400 chr3D 94.005 884 47 4 864 1744 507492926 507492046 0.000000e+00 1334.0
7 TraesCS3B01G430400 chr3D 84.037 545 52 8 1113 1652 507764560 507764046 3.960000e-135 492.0
8 TraesCS3B01G430400 chr3D 87.081 209 17 5 574 774 507493319 507493113 1.230000e-55 228.0
9 TraesCS3B01G430400 chr3D 82.840 169 20 9 4244 4406 217587792 217587627 4.590000e-30 143.0
10 TraesCS3B01G430400 chr3D 95.652 46 2 0 519 564 507493424 507493379 1.700000e-09 75.0
11 TraesCS3B01G430400 chr3A 93.071 2468 112 19 1758 4205 645548640 645546212 0.000000e+00 3555.0
12 TraesCS3B01G430400 chr3A 92.446 887 62 3 864 1750 645549587 645548706 0.000000e+00 1262.0
13 TraesCS3B01G430400 chr3A 88.186 237 15 7 574 797 645549974 645549738 2.020000e-68 270.0
14 TraesCS3B01G430400 chr3A 94.595 111 6 0 4201 4311 55506936 55506826 5.860000e-39 172.0
15 TraesCS3B01G430400 chr6B 83.902 205 28 5 4203 4405 280297212 280297413 1.620000e-44 191.0
16 TraesCS3B01G430400 chr6B 83.929 168 25 2 4204 4370 687041445 687041611 4.560000e-35 159.0
17 TraesCS3B01G430400 chr6B 83.217 143 15 7 4267 4406 455896112 455895976 5.980000e-24 122.0
18 TraesCS3B01G430400 chr5A 100.000 97 0 0 4310 4406 452933242 452933338 3.500000e-41 180.0
19 TraesCS3B01G430400 chr5A 90.769 65 4 1 1490 1554 358412900 358412838 7.850000e-13 86.1
20 TraesCS3B01G430400 chr4A 100.000 97 0 0 4310 4406 621704831 621704735 3.500000e-41 180.0
21 TraesCS3B01G430400 chr1A 95.455 110 5 0 4297 4406 582765088 582764979 4.530000e-40 176.0
22 TraesCS3B01G430400 chr7B 94.643 112 6 0 4200 4311 73567066 73567177 1.630000e-39 174.0
23 TraesCS3B01G430400 chr7B 85.135 148 20 2 4204 4350 560248731 560248585 2.750000e-32 150.0
24 TraesCS3B01G430400 chr2D 94.643 112 6 0 4200 4311 484901129 484901240 1.630000e-39 174.0
25 TraesCS3B01G430400 chr2A 92.982 114 6 2 4295 4406 61475982 61476095 9.800000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G430400 chr3B 669713919 669718324 4405 True 8137.000000 8137 100.000000 1 4406 1 chr3B.!!$R2 4405
1 TraesCS3B01G430400 chr3D 507489550 507493424 3874 True 1387.750000 3914 93.124500 519 4201 4 chr3D.!!$R3 3682
2 TraesCS3B01G430400 chr3D 507764046 507764560 514 True 492.000000 492 84.037000 1113 1652 1 chr3D.!!$R2 539
3 TraesCS3B01G430400 chr3A 645546212 645549974 3762 True 1695.666667 3555 91.234333 574 4205 3 chr3A.!!$R2 3631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.033894 GTCGGTCTCTCTCCCCTCTT 60.034 60.0 0.00 0.0 0.00 2.85 F
352 353 0.252012 ATCGGGGCCAATTTGGTTCA 60.252 50.0 16.62 0.0 40.46 3.18 F
353 354 0.252012 TCGGGGCCAATTTGGTTCAT 60.252 50.0 16.62 0.0 40.46 2.57 F
1159 1323 0.321564 GATGTGGCTGTGCAGTACCA 60.322 55.0 0.00 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2374 0.890542 CCAGTAGCAGCAAAGTGGCA 60.891 55.000 8.33 0.0 35.83 4.92 R
2559 2798 9.088987 TGAGCTTCCCTAATGTTTTTAAGAAAT 57.911 29.630 0.00 0.0 0.00 2.17 R
2762 3001 0.616111 ACAAGCTCGTCCATCCTCCT 60.616 55.000 0.00 0.0 0.00 3.69 R
3495 3736 2.181125 AGATTGCACATGCCATTTGGA 58.819 42.857 0.00 0.0 41.18 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.835580 ATCCTCTCGCATCTGATTGG 57.164 50.000 0.00 0.00 0.00 3.16
20 21 1.780503 TCCTCTCGCATCTGATTGGA 58.219 50.000 0.00 0.00 0.00 3.53
21 22 1.685517 TCCTCTCGCATCTGATTGGAG 59.314 52.381 7.92 7.92 0.00 3.86
22 23 1.270199 CCTCTCGCATCTGATTGGAGG 60.270 57.143 12.33 10.69 33.98 4.30
23 24 1.685517 CTCTCGCATCTGATTGGAGGA 59.314 52.381 12.33 2.80 0.00 3.71
24 25 2.102084 CTCTCGCATCTGATTGGAGGAA 59.898 50.000 12.33 0.00 0.00 3.36
25 26 2.102084 TCTCGCATCTGATTGGAGGAAG 59.898 50.000 12.33 0.00 0.00 3.46
26 27 2.102084 CTCGCATCTGATTGGAGGAAGA 59.898 50.000 6.76 0.00 0.00 2.87
27 28 2.102084 TCGCATCTGATTGGAGGAAGAG 59.898 50.000 0.00 0.00 0.00 2.85
28 29 2.102084 CGCATCTGATTGGAGGAAGAGA 59.898 50.000 0.00 0.00 0.00 3.10
29 30 3.465871 GCATCTGATTGGAGGAAGAGAC 58.534 50.000 0.00 0.00 0.00 3.36
30 31 3.715495 CATCTGATTGGAGGAAGAGACG 58.285 50.000 0.00 0.00 0.00 4.18
31 32 2.808919 TCTGATTGGAGGAAGAGACGT 58.191 47.619 0.00 0.00 0.00 4.34
32 33 2.493675 TCTGATTGGAGGAAGAGACGTG 59.506 50.000 0.00 0.00 0.00 4.49
33 34 1.550524 TGATTGGAGGAAGAGACGTGG 59.449 52.381 0.00 0.00 0.00 4.94
34 35 0.250513 ATTGGAGGAAGAGACGTGGC 59.749 55.000 0.00 0.00 0.00 5.01
35 36 2.154798 TTGGAGGAAGAGACGTGGCG 62.155 60.000 0.00 0.00 0.00 5.69
36 37 2.182030 GAGGAAGAGACGTGGCGG 59.818 66.667 0.00 0.00 0.00 6.13
37 38 3.991536 GAGGAAGAGACGTGGCGGC 62.992 68.421 0.00 0.00 33.59 6.53
59 60 4.007644 CCACTGTCAGCAGCCCGA 62.008 66.667 0.00 0.00 46.30 5.14
60 61 2.740055 CACTGTCAGCAGCCCGAC 60.740 66.667 0.00 5.74 46.30 4.79
61 62 4.008933 ACTGTCAGCAGCCCGACC 62.009 66.667 9.53 0.00 46.30 4.79
79 80 3.899395 GGTGGCCCGTATGTTCAC 58.101 61.111 0.00 0.00 0.00 3.18
80 81 1.747745 GGTGGCCCGTATGTTCACC 60.748 63.158 0.00 0.00 40.63 4.02
81 82 1.003112 GTGGCCCGTATGTTCACCA 60.003 57.895 0.00 0.00 0.00 4.17
82 83 1.003112 TGGCCCGTATGTTCACCAC 60.003 57.895 0.00 0.00 0.00 4.16
83 84 1.003112 GGCCCGTATGTTCACCACA 60.003 57.895 0.00 0.00 40.71 4.17
84 85 1.024579 GGCCCGTATGTTCACCACAG 61.025 60.000 0.00 0.00 39.40 3.66
85 86 1.024579 GCCCGTATGTTCACCACAGG 61.025 60.000 0.00 0.00 39.40 4.00
86 87 0.611200 CCCGTATGTTCACCACAGGA 59.389 55.000 0.00 0.00 39.40 3.86
87 88 1.405526 CCCGTATGTTCACCACAGGAG 60.406 57.143 0.00 0.00 39.40 3.69
88 89 1.548719 CCGTATGTTCACCACAGGAGA 59.451 52.381 0.00 0.00 39.40 3.71
89 90 2.417379 CCGTATGTTCACCACAGGAGAG 60.417 54.545 0.00 0.00 39.40 3.20
90 91 2.492088 CGTATGTTCACCACAGGAGAGA 59.508 50.000 0.00 0.00 39.40 3.10
91 92 3.131223 CGTATGTTCACCACAGGAGAGAT 59.869 47.826 0.00 0.00 39.40 2.75
92 93 4.338400 CGTATGTTCACCACAGGAGAGATA 59.662 45.833 0.00 0.00 39.40 1.98
93 94 5.163550 CGTATGTTCACCACAGGAGAGATAA 60.164 44.000 0.00 0.00 39.40 1.75
94 95 4.537135 TGTTCACCACAGGAGAGATAAC 57.463 45.455 0.00 0.00 0.00 1.89
95 96 4.160329 TGTTCACCACAGGAGAGATAACT 58.840 43.478 0.00 0.00 0.00 2.24
96 97 4.220821 TGTTCACCACAGGAGAGATAACTC 59.779 45.833 0.00 0.00 42.90 3.01
97 98 7.261742 ATGTTCACCACAGGAGAGATAACTCT 61.262 42.308 1.52 1.52 46.70 3.24
105 106 3.171705 GAGATAACTCTCGCCGCTG 57.828 57.895 0.00 0.00 38.70 5.18
106 107 0.937231 GAGATAACTCTCGCCGCTGC 60.937 60.000 0.00 0.00 38.70 5.25
107 108 1.951631 GATAACTCTCGCCGCTGCC 60.952 63.158 0.00 0.00 0.00 4.85
108 109 3.774959 ATAACTCTCGCCGCTGCCG 62.775 63.158 0.00 0.00 0.00 5.69
118 119 3.141488 CGCTGCCGGAGTAGGACT 61.141 66.667 5.05 0.00 0.00 3.85
119 120 2.809010 GCTGCCGGAGTAGGACTC 59.191 66.667 5.05 0.00 44.32 3.36
120 121 3.111939 CTGCCGGAGTAGGACTCG 58.888 66.667 5.05 0.00 45.96 4.18
121 122 1.749638 CTGCCGGAGTAGGACTCGT 60.750 63.158 5.05 0.00 45.96 4.18
122 123 1.716826 CTGCCGGAGTAGGACTCGTC 61.717 65.000 5.05 0.00 45.96 4.20
123 124 2.821688 GCCGGAGTAGGACTCGTCG 61.822 68.421 5.05 0.39 45.96 5.12
124 125 2.178890 CCGGAGTAGGACTCGTCGG 61.179 68.421 0.00 9.07 45.96 4.79
125 126 2.821688 CGGAGTAGGACTCGTCGGC 61.822 68.421 0.73 0.00 45.96 5.54
126 127 2.708255 GAGTAGGACTCGTCGGCG 59.292 66.667 1.15 1.15 35.28 6.46
127 128 1.812922 GAGTAGGACTCGTCGGCGA 60.813 63.158 13.29 13.29 45.79 5.54
128 129 2.034472 GAGTAGGACTCGTCGGCGAC 62.034 65.000 29.06 29.06 42.81 5.19
142 143 4.934144 CGACGAGCAATTTCGAGC 57.066 55.556 6.54 0.00 43.03 5.03
143 144 1.345176 CGACGAGCAATTTCGAGCC 59.655 57.895 6.54 0.00 43.03 4.70
144 145 1.351430 CGACGAGCAATTTCGAGCCA 61.351 55.000 6.54 0.00 43.03 4.75
145 146 0.095417 GACGAGCAATTTCGAGCCAC 59.905 55.000 6.54 0.00 43.03 5.01
146 147 0.602638 ACGAGCAATTTCGAGCCACA 60.603 50.000 6.54 0.00 43.03 4.17
147 148 0.095935 CGAGCAATTTCGAGCCACAG 59.904 55.000 0.00 0.00 43.03 3.66
148 149 1.442769 GAGCAATTTCGAGCCACAGA 58.557 50.000 0.00 0.00 0.00 3.41
149 150 1.396301 GAGCAATTTCGAGCCACAGAG 59.604 52.381 0.00 0.00 0.00 3.35
150 151 0.179179 GCAATTTCGAGCCACAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
151 152 1.159285 CAATTTCGAGCCACAGAGCA 58.841 50.000 0.00 0.00 34.23 4.26
152 153 1.741706 CAATTTCGAGCCACAGAGCAT 59.258 47.619 0.00 0.00 34.23 3.79
153 154 2.938451 CAATTTCGAGCCACAGAGCATA 59.062 45.455 0.00 0.00 34.23 3.14
154 155 2.760634 TTTCGAGCCACAGAGCATAA 57.239 45.000 0.00 0.00 34.23 1.90
155 156 2.299993 TTCGAGCCACAGAGCATAAG 57.700 50.000 0.00 0.00 34.23 1.73
156 157 0.179100 TCGAGCCACAGAGCATAAGC 60.179 55.000 0.00 0.00 42.56 3.09
170 171 3.861840 GCATAAGCTTAGACCACTGTCA 58.138 45.455 12.54 0.00 39.93 3.58
171 172 3.868077 GCATAAGCTTAGACCACTGTCAG 59.132 47.826 12.54 0.00 39.93 3.51
172 173 4.621747 GCATAAGCTTAGACCACTGTCAGT 60.622 45.833 12.54 0.00 39.93 3.41
173 174 3.669251 AAGCTTAGACCACTGTCAGTC 57.331 47.619 1.37 0.00 44.33 3.51
174 175 1.896465 AGCTTAGACCACTGTCAGTCC 59.104 52.381 1.37 0.00 44.33 3.85
175 176 1.896465 GCTTAGACCACTGTCAGTCCT 59.104 52.381 1.37 3.64 44.33 3.85
176 177 2.353208 GCTTAGACCACTGTCAGTCCTG 60.353 54.545 1.37 0.00 44.33 3.86
177 178 2.971901 TAGACCACTGTCAGTCCTGA 57.028 50.000 1.37 0.00 44.33 3.86
186 187 2.341452 TCAGTCCTGACACTCACCG 58.659 57.895 0.00 0.00 34.14 4.94
187 188 0.467474 TCAGTCCTGACACTCACCGT 60.467 55.000 0.00 0.00 34.14 4.83
188 189 0.389391 CAGTCCTGACACTCACCGTT 59.611 55.000 0.00 0.00 0.00 4.44
189 190 1.611977 CAGTCCTGACACTCACCGTTA 59.388 52.381 0.00 0.00 0.00 3.18
190 191 1.887198 AGTCCTGACACTCACCGTTAG 59.113 52.381 0.00 0.00 0.00 2.34
191 192 1.884579 GTCCTGACACTCACCGTTAGA 59.115 52.381 0.00 0.00 0.00 2.10
192 193 2.295349 GTCCTGACACTCACCGTTAGAA 59.705 50.000 0.00 0.00 0.00 2.10
193 194 2.960384 TCCTGACACTCACCGTTAGAAA 59.040 45.455 0.00 0.00 0.00 2.52
194 195 3.057734 CCTGACACTCACCGTTAGAAAC 58.942 50.000 0.00 0.00 0.00 2.78
207 208 4.056092 GTTAGAAACGGAATCGGATCCT 57.944 45.455 10.75 0.00 41.39 3.24
208 209 2.604046 AGAAACGGAATCGGATCCTG 57.396 50.000 10.75 3.62 41.39 3.86
209 210 1.139058 AGAAACGGAATCGGATCCTGG 59.861 52.381 10.75 0.00 41.39 4.45
210 211 0.180406 AAACGGAATCGGATCCTGGG 59.820 55.000 10.75 0.00 41.39 4.45
211 212 0.689745 AACGGAATCGGATCCTGGGA 60.690 55.000 10.75 0.00 41.39 4.37
212 213 0.471971 ACGGAATCGGATCCTGGGAT 60.472 55.000 10.75 1.24 41.39 3.85
213 214 1.203137 ACGGAATCGGATCCTGGGATA 60.203 52.381 10.75 0.00 41.39 2.59
214 215 1.899814 CGGAATCGGATCCTGGGATAA 59.100 52.381 10.75 0.00 37.34 1.75
215 216 2.353803 CGGAATCGGATCCTGGGATAAC 60.354 54.545 10.75 3.96 37.34 1.89
216 217 2.027100 GGAATCGGATCCTGGGATAACC 60.027 54.545 10.75 8.82 36.50 2.85
217 218 2.723530 ATCGGATCCTGGGATAACCT 57.276 50.000 10.75 0.00 41.11 3.50
218 219 3.847042 ATCGGATCCTGGGATAACCTA 57.153 47.619 10.75 0.00 41.11 3.08
219 220 3.170991 TCGGATCCTGGGATAACCTAG 57.829 52.381 10.75 0.00 43.19 3.02
220 221 2.720254 TCGGATCCTGGGATAACCTAGA 59.280 50.000 10.75 0.00 45.87 2.43
221 222 3.093057 CGGATCCTGGGATAACCTAGAG 58.907 54.545 10.75 0.00 45.87 2.43
222 223 2.835156 GGATCCTGGGATAACCTAGAGC 59.165 54.545 3.84 0.00 45.87 4.09
223 224 3.503227 GGATCCTGGGATAACCTAGAGCT 60.503 52.174 3.84 0.00 45.87 4.09
224 225 3.246416 TCCTGGGATAACCTAGAGCTC 57.754 52.381 5.27 5.27 45.87 4.09
225 226 1.889829 CCTGGGATAACCTAGAGCTCG 59.110 57.143 8.37 0.00 45.87 5.03
226 227 1.271102 CTGGGATAACCTAGAGCTCGC 59.729 57.143 8.37 0.00 45.87 5.03
227 228 0.241481 GGGATAACCTAGAGCTCGCG 59.759 60.000 8.37 0.00 35.85 5.87
228 229 0.387494 GGATAACCTAGAGCTCGCGC 60.387 60.000 8.37 0.00 0.00 6.86
229 230 0.311165 GATAACCTAGAGCTCGCGCA 59.689 55.000 8.75 0.00 39.10 6.09
230 231 0.962489 ATAACCTAGAGCTCGCGCAT 59.038 50.000 8.75 0.00 39.10 4.73
231 232 0.311165 TAACCTAGAGCTCGCGCATC 59.689 55.000 8.75 0.00 39.10 3.91
232 233 1.388065 AACCTAGAGCTCGCGCATCT 61.388 55.000 8.75 7.03 39.10 2.90
233 234 1.081509 CCTAGAGCTCGCGCATCTC 60.082 63.158 8.75 10.32 39.10 2.75
234 235 1.514678 CCTAGAGCTCGCGCATCTCT 61.515 60.000 21.39 21.39 40.08 3.10
235 236 0.385849 CTAGAGCTCGCGCATCTCTG 60.386 60.000 24.45 14.74 37.70 3.35
236 237 1.098129 TAGAGCTCGCGCATCTCTGT 61.098 55.000 24.45 10.72 37.70 3.41
237 238 2.202716 AGCTCGCGCATCTCTGTG 60.203 61.111 8.75 0.00 39.10 3.66
238 239 3.260483 GCTCGCGCATCTCTGTGG 61.260 66.667 8.75 0.00 35.78 4.17
239 240 2.584418 CTCGCGCATCTCTGTGGG 60.584 66.667 8.75 0.00 44.66 4.61
241 242 2.107750 CGCGCATCTCTGTGGGAT 59.892 61.111 8.75 0.00 45.78 3.85
242 243 1.106944 TCGCGCATCTCTGTGGGATA 61.107 55.000 8.75 0.00 46.24 2.59
243 244 0.941463 CGCGCATCTCTGTGGGATAC 60.941 60.000 8.75 0.00 45.78 2.24
244 245 0.104855 GCGCATCTCTGTGGGATACA 59.895 55.000 0.30 0.00 37.78 2.29
245 246 1.473257 GCGCATCTCTGTGGGATACAA 60.473 52.381 0.30 0.00 39.20 2.41
246 247 2.905075 CGCATCTCTGTGGGATACAAA 58.095 47.619 0.00 0.00 39.20 2.83
247 248 3.470709 CGCATCTCTGTGGGATACAAAT 58.529 45.455 0.00 0.00 39.20 2.32
248 249 3.496130 CGCATCTCTGTGGGATACAAATC 59.504 47.826 0.00 0.00 39.20 2.17
256 257 2.222592 GGATACAAATCCCGACGCG 58.777 57.895 3.53 3.53 45.37 6.01
257 258 1.563173 GATACAAATCCCGACGCGC 59.437 57.895 5.73 0.00 0.00 6.86
258 259 2.142418 GATACAAATCCCGACGCGCG 62.142 60.000 30.96 30.96 40.47 6.86
259 260 2.616786 ATACAAATCCCGACGCGCGA 62.617 55.000 39.36 14.91 44.57 5.87
260 261 4.204891 CAAATCCCGACGCGCGAC 62.205 66.667 39.36 30.23 44.57 5.19
261 262 4.430765 AAATCCCGACGCGCGACT 62.431 61.111 39.36 16.45 44.57 4.18
262 263 3.927163 AAATCCCGACGCGCGACTT 62.927 57.895 39.36 17.69 44.57 3.01
263 264 4.849329 ATCCCGACGCGCGACTTC 62.849 66.667 39.36 22.88 44.57 3.01
275 276 2.342648 GACTTCGGGCGAACACCT 59.657 61.111 0.00 0.00 0.00 4.00
276 277 2.027625 GACTTCGGGCGAACACCTG 61.028 63.158 0.00 0.00 37.44 4.00
277 278 2.742372 CTTCGGGCGAACACCTGG 60.742 66.667 0.00 0.00 36.66 4.45
278 279 3.530910 CTTCGGGCGAACACCTGGT 62.531 63.158 0.00 0.00 36.66 4.00
279 280 3.818121 TTCGGGCGAACACCTGGTG 62.818 63.158 24.80 24.80 39.75 4.17
281 282 3.948719 GGGCGAACACCTGGTGGA 61.949 66.667 29.05 0.00 37.94 4.02
282 283 2.112297 GGCGAACACCTGGTGGAA 59.888 61.111 29.05 0.00 37.94 3.53
283 284 2.258726 GGCGAACACCTGGTGGAAC 61.259 63.158 29.05 18.01 37.94 3.62
308 309 3.507009 CGGGTCGGTCGGTCTCTC 61.507 72.222 0.00 0.00 0.00 3.20
309 310 2.045143 GGGTCGGTCGGTCTCTCT 60.045 66.667 0.00 0.00 0.00 3.10
310 311 2.114051 GGGTCGGTCGGTCTCTCTC 61.114 68.421 0.00 0.00 0.00 3.20
311 312 2.114051 GGTCGGTCGGTCTCTCTCC 61.114 68.421 0.00 0.00 0.00 3.71
312 313 2.114051 GTCGGTCGGTCTCTCTCCC 61.114 68.421 0.00 0.00 0.00 4.30
313 314 2.829458 CGGTCGGTCTCTCTCCCC 60.829 72.222 0.00 0.00 0.00 4.81
314 315 2.684735 GGTCGGTCTCTCTCCCCT 59.315 66.667 0.00 0.00 0.00 4.79
315 316 1.454295 GGTCGGTCTCTCTCCCCTC 60.454 68.421 0.00 0.00 0.00 4.30
316 317 1.610873 GTCGGTCTCTCTCCCCTCT 59.389 63.158 0.00 0.00 0.00 3.69
317 318 0.033894 GTCGGTCTCTCTCCCCTCTT 60.034 60.000 0.00 0.00 0.00 2.85
318 319 0.705253 TCGGTCTCTCTCCCCTCTTT 59.295 55.000 0.00 0.00 0.00 2.52
319 320 1.077334 TCGGTCTCTCTCCCCTCTTTT 59.923 52.381 0.00 0.00 0.00 2.27
320 321 1.205893 CGGTCTCTCTCCCCTCTTTTG 59.794 57.143 0.00 0.00 0.00 2.44
321 322 2.261729 GGTCTCTCTCCCCTCTTTTGT 58.738 52.381 0.00 0.00 0.00 2.83
322 323 2.640332 GGTCTCTCTCCCCTCTTTTGTT 59.360 50.000 0.00 0.00 0.00 2.83
323 324 3.558109 GGTCTCTCTCCCCTCTTTTGTTG 60.558 52.174 0.00 0.00 0.00 3.33
324 325 3.071747 GTCTCTCTCCCCTCTTTTGTTGT 59.928 47.826 0.00 0.00 0.00 3.32
325 326 3.716872 TCTCTCTCCCCTCTTTTGTTGTT 59.283 43.478 0.00 0.00 0.00 2.83
326 327 3.817647 CTCTCTCCCCTCTTTTGTTGTTG 59.182 47.826 0.00 0.00 0.00 3.33
327 328 3.202151 TCTCTCCCCTCTTTTGTTGTTGT 59.798 43.478 0.00 0.00 0.00 3.32
328 329 3.954258 CTCTCCCCTCTTTTGTTGTTGTT 59.046 43.478 0.00 0.00 0.00 2.83
329 330 5.104277 TCTCTCCCCTCTTTTGTTGTTGTTA 60.104 40.000 0.00 0.00 0.00 2.41
330 331 5.511363 TCTCCCCTCTTTTGTTGTTGTTAA 58.489 37.500 0.00 0.00 0.00 2.01
331 332 5.358725 TCTCCCCTCTTTTGTTGTTGTTAAC 59.641 40.000 0.00 0.00 0.00 2.01
332 333 5.017490 TCCCCTCTTTTGTTGTTGTTAACA 58.983 37.500 3.59 3.59 38.69 2.41
341 342 1.249407 TGTTGTTAACAATCGGGGCC 58.751 50.000 23.11 9.67 38.72 5.80
342 343 1.249407 GTTGTTAACAATCGGGGCCA 58.751 50.000 23.11 0.00 38.24 5.36
343 344 1.614413 GTTGTTAACAATCGGGGCCAA 59.386 47.619 23.11 0.00 38.24 4.52
344 345 2.223803 TGTTAACAATCGGGGCCAAT 57.776 45.000 5.64 0.00 0.00 3.16
345 346 2.530701 TGTTAACAATCGGGGCCAATT 58.469 42.857 5.64 1.06 0.00 2.32
346 347 2.900546 TGTTAACAATCGGGGCCAATTT 59.099 40.909 5.64 0.00 0.00 1.82
347 348 3.258228 GTTAACAATCGGGGCCAATTTG 58.742 45.455 4.39 7.94 0.00 2.32
348 349 0.612744 AACAATCGGGGCCAATTTGG 59.387 50.000 11.27 11.27 41.55 3.28
349 350 0.544120 ACAATCGGGGCCAATTTGGT 60.544 50.000 16.62 0.00 40.46 3.67
350 351 0.612744 CAATCGGGGCCAATTTGGTT 59.387 50.000 16.62 0.00 40.46 3.67
351 352 0.901827 AATCGGGGCCAATTTGGTTC 59.098 50.000 16.62 9.33 40.46 3.62
352 353 0.252012 ATCGGGGCCAATTTGGTTCA 60.252 50.000 16.62 0.00 40.46 3.18
353 354 0.252012 TCGGGGCCAATTTGGTTCAT 60.252 50.000 16.62 0.00 40.46 2.57
354 355 1.006043 TCGGGGCCAATTTGGTTCATA 59.994 47.619 16.62 0.00 40.46 2.15
355 356 1.408702 CGGGGCCAATTTGGTTCATAG 59.591 52.381 16.62 1.22 40.46 2.23
356 357 2.745968 GGGGCCAATTTGGTTCATAGA 58.254 47.619 16.62 0.00 40.46 1.98
357 358 2.695147 GGGGCCAATTTGGTTCATAGAG 59.305 50.000 16.62 0.00 40.46 2.43
358 359 2.101415 GGGCCAATTTGGTTCATAGAGC 59.899 50.000 16.62 0.00 40.46 4.09
359 360 2.760092 GGCCAATTTGGTTCATAGAGCA 59.240 45.455 16.62 0.00 40.46 4.26
360 361 3.195396 GGCCAATTTGGTTCATAGAGCAA 59.805 43.478 16.62 0.00 40.46 3.91
361 362 4.322650 GGCCAATTTGGTTCATAGAGCAAA 60.323 41.667 16.62 4.94 46.92 3.68
362 363 5.237048 GCCAATTTGGTTCATAGAGCAAAA 58.763 37.500 16.62 0.00 46.27 2.44
363 364 5.876460 GCCAATTTGGTTCATAGAGCAAAAT 59.124 36.000 16.62 0.00 46.27 1.82
364 365 7.041107 GCCAATTTGGTTCATAGAGCAAAATA 58.959 34.615 16.62 0.00 46.27 1.40
365 366 7.010460 GCCAATTTGGTTCATAGAGCAAAATAC 59.990 37.037 16.62 0.00 46.27 1.89
366 367 8.253113 CCAATTTGGTTCATAGAGCAAAATACT 58.747 33.333 7.31 0.00 46.27 2.12
367 368 9.079833 CAATTTGGTTCATAGAGCAAAATACTG 57.920 33.333 6.37 0.39 46.27 2.74
368 369 6.757897 TTGGTTCATAGAGCAAAATACTGG 57.242 37.500 0.00 0.00 34.41 4.00
369 370 4.640201 TGGTTCATAGAGCAAAATACTGGC 59.360 41.667 0.00 0.00 0.00 4.85
370 371 4.640201 GGTTCATAGAGCAAAATACTGGCA 59.360 41.667 0.00 0.00 0.00 4.92
371 372 5.300286 GGTTCATAGAGCAAAATACTGGCAT 59.700 40.000 0.00 0.00 0.00 4.40
372 373 6.204359 GTTCATAGAGCAAAATACTGGCATG 58.796 40.000 0.00 0.00 0.00 4.06
373 374 5.439721 TCATAGAGCAAAATACTGGCATGT 58.560 37.500 0.00 0.00 0.00 3.21
374 375 5.528690 TCATAGAGCAAAATACTGGCATGTC 59.471 40.000 0.00 0.00 0.00 3.06
375 376 3.689347 AGAGCAAAATACTGGCATGTCA 58.311 40.909 0.00 0.00 0.00 3.58
376 377 4.081406 AGAGCAAAATACTGGCATGTCAA 58.919 39.130 0.00 0.00 0.00 3.18
377 378 4.523943 AGAGCAAAATACTGGCATGTCAAA 59.476 37.500 0.00 0.00 0.00 2.69
378 379 5.186409 AGAGCAAAATACTGGCATGTCAAAT 59.814 36.000 0.00 0.00 0.00 2.32
379 380 6.377996 AGAGCAAAATACTGGCATGTCAAATA 59.622 34.615 0.00 0.00 0.00 1.40
380 381 6.567050 AGCAAAATACTGGCATGTCAAATAG 58.433 36.000 0.00 0.00 0.00 1.73
381 382 6.377996 AGCAAAATACTGGCATGTCAAATAGA 59.622 34.615 0.00 0.00 0.00 1.98
400 401 9.619727 CAAATAGACATAAGTGTAACGAAATCG 57.380 33.333 0.48 0.48 45.86 3.34
401 402 9.577110 AAATAGACATAAGTGTAACGAAATCGA 57.423 29.630 10.16 0.00 45.86 3.59
402 403 6.866179 AGACATAAGTGTAACGAAATCGAC 57.134 37.500 10.16 0.00 45.86 4.20
403 404 5.510674 AGACATAAGTGTAACGAAATCGACG 59.489 40.000 10.16 0.00 45.86 5.12
404 405 4.560035 ACATAAGTGTAACGAAATCGACGG 59.440 41.667 10.16 0.00 45.86 4.79
405 406 2.995466 AGTGTAACGAAATCGACGGA 57.005 45.000 10.16 0.00 45.86 4.69
406 407 3.287312 AGTGTAACGAAATCGACGGAA 57.713 42.857 10.16 0.00 45.86 4.30
407 408 3.641648 AGTGTAACGAAATCGACGGAAA 58.358 40.909 10.16 0.00 45.86 3.13
408 409 4.240096 AGTGTAACGAAATCGACGGAAAT 58.760 39.130 10.16 0.00 45.86 2.17
409 410 4.090930 AGTGTAACGAAATCGACGGAAATG 59.909 41.667 10.16 0.00 45.86 2.32
410 411 2.520686 AACGAAATCGACGGAAATGC 57.479 45.000 10.16 0.00 43.02 3.56
411 412 0.725117 ACGAAATCGACGGAAATGCC 59.275 50.000 10.16 0.00 43.02 4.40
412 413 0.724549 CGAAATCGACGGAAATGCCA 59.275 50.000 0.00 0.00 43.02 4.92
413 414 1.330521 CGAAATCGACGGAAATGCCAT 59.669 47.619 0.00 0.00 43.02 4.40
414 415 2.223249 CGAAATCGACGGAAATGCCATT 60.223 45.455 0.00 0.00 43.02 3.16
415 416 3.363178 GAAATCGACGGAAATGCCATTC 58.637 45.455 0.00 0.00 35.94 2.67
416 417 2.036958 ATCGACGGAAATGCCATTCA 57.963 45.000 0.00 0.00 35.94 2.57
417 418 1.368641 TCGACGGAAATGCCATTCAG 58.631 50.000 0.00 0.12 35.94 3.02
418 419 0.378257 CGACGGAAATGCCATTCAGG 59.622 55.000 0.00 0.00 41.84 3.86
419 420 0.740737 GACGGAAATGCCATTCAGGG 59.259 55.000 0.00 0.00 38.09 4.45
420 421 0.331278 ACGGAAATGCCATTCAGGGA 59.669 50.000 0.00 0.00 44.34 4.20
421 422 1.272425 ACGGAAATGCCATTCAGGGAA 60.272 47.619 0.00 0.00 42.99 3.97
422 423 1.406539 CGGAAATGCCATTCAGGGAAG 59.593 52.381 0.00 0.00 42.99 3.46
423 424 1.758862 GGAAATGCCATTCAGGGAAGG 59.241 52.381 0.00 0.00 42.99 3.46
424 425 2.624029 GGAAATGCCATTCAGGGAAGGA 60.624 50.000 0.00 0.00 42.99 3.36
425 426 2.925966 AATGCCATTCAGGGAAGGAA 57.074 45.000 0.00 0.00 42.99 3.36
426 427 3.409804 AATGCCATTCAGGGAAGGAAT 57.590 42.857 0.00 0.00 42.99 3.01
428 429 1.358787 TGCCATTCAGGGAAGGAATGT 59.641 47.619 12.51 0.00 46.41 2.71
429 430 2.580322 TGCCATTCAGGGAAGGAATGTA 59.420 45.455 12.51 1.40 46.41 2.29
430 431 3.217626 GCCATTCAGGGAAGGAATGTAG 58.782 50.000 12.51 2.10 46.41 2.74
431 432 3.117888 GCCATTCAGGGAAGGAATGTAGA 60.118 47.826 12.51 0.00 46.41 2.59
432 433 4.446889 GCCATTCAGGGAAGGAATGTAGAT 60.447 45.833 12.51 0.00 46.41 1.98
433 434 5.068636 CCATTCAGGGAAGGAATGTAGATG 58.931 45.833 12.51 0.00 46.41 2.90
434 435 3.845781 TCAGGGAAGGAATGTAGATGC 57.154 47.619 0.00 0.00 0.00 3.91
435 436 3.114606 TCAGGGAAGGAATGTAGATGCA 58.885 45.455 0.00 0.00 0.00 3.96
436 437 3.135348 TCAGGGAAGGAATGTAGATGCAG 59.865 47.826 0.00 0.00 0.00 4.41
437 438 3.118112 CAGGGAAGGAATGTAGATGCAGT 60.118 47.826 0.00 0.00 0.00 4.40
438 439 3.118112 AGGGAAGGAATGTAGATGCAGTG 60.118 47.826 0.00 0.00 0.00 3.66
439 440 3.370953 GGGAAGGAATGTAGATGCAGTGT 60.371 47.826 0.00 0.00 0.00 3.55
440 441 3.873952 GGAAGGAATGTAGATGCAGTGTC 59.126 47.826 0.00 0.00 0.00 3.67
441 442 3.170791 AGGAATGTAGATGCAGTGTCG 57.829 47.619 0.00 0.00 0.00 4.35
442 443 2.760650 AGGAATGTAGATGCAGTGTCGA 59.239 45.455 0.00 0.00 0.00 4.20
443 444 3.195610 AGGAATGTAGATGCAGTGTCGAA 59.804 43.478 0.00 0.00 0.00 3.71
444 445 3.932710 GGAATGTAGATGCAGTGTCGAAA 59.067 43.478 0.00 0.00 0.00 3.46
445 446 4.391830 GGAATGTAGATGCAGTGTCGAAAA 59.608 41.667 0.00 0.00 0.00 2.29
446 447 5.065218 GGAATGTAGATGCAGTGTCGAAAAT 59.935 40.000 0.00 0.00 0.00 1.82
447 448 4.926860 TGTAGATGCAGTGTCGAAAATG 57.073 40.909 0.00 0.00 0.00 2.32
448 449 4.565022 TGTAGATGCAGTGTCGAAAATGA 58.435 39.130 7.34 0.00 0.00 2.57
449 450 4.994217 TGTAGATGCAGTGTCGAAAATGAA 59.006 37.500 7.34 0.00 0.00 2.57
450 451 5.643348 TGTAGATGCAGTGTCGAAAATGAAT 59.357 36.000 7.34 0.59 0.00 2.57
451 452 5.633830 AGATGCAGTGTCGAAAATGAATT 57.366 34.783 7.34 0.00 0.00 2.17
452 453 6.017400 AGATGCAGTGTCGAAAATGAATTT 57.983 33.333 7.34 0.00 0.00 1.82
453 454 6.449698 AGATGCAGTGTCGAAAATGAATTTT 58.550 32.000 7.34 0.68 42.24 1.82
454 455 7.592938 AGATGCAGTGTCGAAAATGAATTTTA 58.407 30.769 7.34 0.00 39.86 1.52
455 456 8.246180 AGATGCAGTGTCGAAAATGAATTTTAT 58.754 29.630 7.34 0.00 39.86 1.40
456 457 8.761575 ATGCAGTGTCGAAAATGAATTTTATT 57.238 26.923 7.34 0.00 39.86 1.40
457 458 8.586570 TGCAGTGTCGAAAATGAATTTTATTT 57.413 26.923 7.34 0.00 39.86 1.40
458 459 9.039870 TGCAGTGTCGAAAATGAATTTTATTTT 57.960 25.926 7.34 10.60 39.86 1.82
477 478 9.467796 TTTATTTTATTTTTGGGCCAAATAGGG 57.532 29.630 30.82 0.00 38.09 3.53
478 479 6.704056 TTTTATTTTTGGGCCAAATAGGGA 57.296 33.333 30.82 14.14 38.09 4.20
479 480 6.704056 TTTATTTTTGGGCCAAATAGGGAA 57.296 33.333 30.82 21.61 38.09 3.97
480 481 4.842531 ATTTTTGGGCCAAATAGGGAAG 57.157 40.909 30.82 0.00 38.09 3.46
481 482 1.567357 TTTGGGCCAAATAGGGAAGC 58.433 50.000 27.28 0.00 38.09 3.86
482 483 0.411452 TTGGGCCAAATAGGGAAGCA 59.589 50.000 18.51 0.00 38.09 3.91
483 484 0.636101 TGGGCCAAATAGGGAAGCAT 59.364 50.000 2.13 0.00 38.09 3.79
484 485 1.856259 TGGGCCAAATAGGGAAGCATA 59.144 47.619 2.13 0.00 38.09 3.14
485 486 2.239400 GGGCCAAATAGGGAAGCATAC 58.761 52.381 4.39 0.00 38.09 2.39
486 487 2.158460 GGGCCAAATAGGGAAGCATACT 60.158 50.000 4.39 0.00 38.09 2.12
487 488 3.566351 GGCCAAATAGGGAAGCATACTT 58.434 45.455 0.00 0.00 36.94 2.24
488 489 3.960755 GGCCAAATAGGGAAGCATACTTT 59.039 43.478 0.00 0.00 35.13 2.66
489 490 5.137551 GGCCAAATAGGGAAGCATACTTTA 58.862 41.667 0.00 0.00 35.13 1.85
490 491 5.009710 GGCCAAATAGGGAAGCATACTTTAC 59.990 44.000 0.00 0.00 35.13 2.01
491 492 5.828328 GCCAAATAGGGAAGCATACTTTACT 59.172 40.000 0.00 0.00 35.13 2.24
492 493 6.321435 GCCAAATAGGGAAGCATACTTTACTT 59.679 38.462 0.00 0.00 35.13 2.24
493 494 7.147897 GCCAAATAGGGAAGCATACTTTACTTT 60.148 37.037 0.00 0.00 35.13 2.66
494 495 8.406297 CCAAATAGGGAAGCATACTTTACTTTC 58.594 37.037 0.00 0.00 35.82 2.62
495 496 9.178758 CAAATAGGGAAGCATACTTTACTTTCT 57.821 33.333 0.00 0.00 35.82 2.52
496 497 8.966069 AATAGGGAAGCATACTTTACTTTCTC 57.034 34.615 0.00 0.00 35.82 2.87
497 498 6.628644 AGGGAAGCATACTTTACTTTCTCT 57.371 37.500 0.00 0.00 35.82 3.10
498 499 6.645306 AGGGAAGCATACTTTACTTTCTCTC 58.355 40.000 0.00 0.00 35.82 3.20
499 500 6.442244 AGGGAAGCATACTTTACTTTCTCTCT 59.558 38.462 0.00 0.00 35.82 3.10
500 501 6.759356 GGGAAGCATACTTTACTTTCTCTCTC 59.241 42.308 0.00 0.00 35.82 3.20
501 502 6.474102 GGAAGCATACTTTACTTTCTCTCTCG 59.526 42.308 0.00 0.00 35.82 4.04
502 503 5.897050 AGCATACTTTACTTTCTCTCTCGG 58.103 41.667 0.00 0.00 0.00 4.63
503 504 5.044558 GCATACTTTACTTTCTCTCTCGGG 58.955 45.833 0.00 0.00 0.00 5.14
504 505 5.163540 GCATACTTTACTTTCTCTCTCGGGA 60.164 44.000 0.00 0.00 0.00 5.14
505 506 6.627508 GCATACTTTACTTTCTCTCTCGGGAA 60.628 42.308 0.00 0.00 0.00 3.97
506 507 5.803237 ACTTTACTTTCTCTCTCGGGAAA 57.197 39.130 0.00 0.00 0.00 3.13
507 508 6.170846 ACTTTACTTTCTCTCTCGGGAAAA 57.829 37.500 0.00 0.00 32.17 2.29
508 509 6.589135 ACTTTACTTTCTCTCTCGGGAAAAA 58.411 36.000 0.00 0.00 32.17 1.94
564 565 4.181010 CCTGACATCCCTGGCCCG 62.181 72.222 0.00 0.00 0.00 6.13
565 566 4.864334 CTGACATCCCTGGCCCGC 62.864 72.222 0.00 0.00 0.00 6.13
570 571 4.488911 ATCCCTGGCCCGCTCTCT 62.489 66.667 0.00 0.00 0.00 3.10
580 581 0.880278 CCCGCTCTCTCTCTCTCTCG 60.880 65.000 0.00 0.00 0.00 4.04
629 679 4.695455 TCTGGTTCGATCCAATTTGTTCTC 59.305 41.667 15.83 0.00 37.01 2.87
656 707 2.202650 GCAATTTGCTGCGCCGAT 60.203 55.556 14.11 0.00 40.96 4.18
717 780 1.557443 CGGACCGGCGCTAATTGATC 61.557 60.000 7.64 0.00 0.00 2.92
727 790 3.594134 CGCTAATTGATCCCCTCTCATC 58.406 50.000 0.00 0.00 0.00 2.92
826 923 2.818274 CGTGCTTTCTACCCCCGC 60.818 66.667 0.00 0.00 0.00 6.13
842 939 4.886121 GCCCGTTCGTCCCCGATC 62.886 72.222 0.00 0.00 43.80 3.69
861 958 0.884704 CTGGTTGCTGCGTGTTACCT 60.885 55.000 0.00 0.00 0.00 3.08
941 1105 1.871676 GAACTGAACTGAAACCCGTCC 59.128 52.381 0.00 0.00 0.00 4.79
952 1116 4.530857 CCCGTCCCTGACCATCGC 62.531 72.222 0.00 0.00 0.00 4.58
954 1118 2.202797 CGTCCCTGACCATCGCTG 60.203 66.667 0.00 0.00 0.00 5.18
956 1120 1.448540 GTCCCTGACCATCGCTGTG 60.449 63.158 0.00 0.00 0.00 3.66
994 1158 1.409241 GCCAGAAATCATCAGCAGGGA 60.409 52.381 0.00 0.00 31.74 4.20
1027 1191 1.230635 GCTCTTTCTGCAAGTGCCGA 61.231 55.000 0.00 0.00 43.47 5.54
1062 1226 3.865446 TGTTGATACAGATGCTGTGAGG 58.135 45.455 10.15 0.00 45.01 3.86
1071 1235 3.071206 GCTGTGAGGGCGAGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
1074 1238 1.000359 TGTGAGGGCGAGGAGATCA 60.000 57.895 0.00 0.00 0.00 2.92
1083 1247 1.686052 GCGAGGAGATCACTTCTGGAT 59.314 52.381 0.00 0.00 33.74 3.41
1159 1323 0.321564 GATGTGGCTGTGCAGTACCA 60.322 55.000 0.00 0.00 0.00 3.25
1233 1397 2.313041 TCTCCTGGAGATGAAGGACTCA 59.687 50.000 22.30 0.00 37.68 3.41
1286 1450 3.476552 TGATTTTCGACAAGAAGCCTGT 58.523 40.909 0.00 0.00 40.40 4.00
1395 1559 7.601073 TGTATTTTCTGCTTCTACTCACATG 57.399 36.000 0.00 0.00 0.00 3.21
1403 1567 5.815581 TGCTTCTACTCACATGGGTTTTAT 58.184 37.500 0.00 0.00 0.00 1.40
1569 1738 7.213216 TGCTTCAGCTTGTTCATAATGTAAA 57.787 32.000 0.00 0.00 42.66 2.01
1799 2033 8.868522 ATAGTTCATCAAGAAACATCTTGGAA 57.131 30.769 16.17 10.84 45.15 3.53
1800 2034 6.974965 AGTTCATCAAGAAACATCTTGGAAC 58.025 36.000 20.79 20.79 45.15 3.62
1886 2120 8.663025 CATAAATAGTATGCTATGTTCTGCCTG 58.337 37.037 3.90 0.00 37.92 4.85
1887 2121 5.815233 ATAGTATGCTATGTTCTGCCTGT 57.185 39.130 2.13 0.00 36.62 4.00
1897 2131 4.689612 TGTTCTGCCTGTCTTTTACTCT 57.310 40.909 0.00 0.00 0.00 3.24
1985 2224 5.837438 TGTTAGGGGTTAGAGCTTAGGTATC 59.163 44.000 0.00 0.00 0.00 2.24
2017 2256 9.372541 GTTTTGTCTTTCATTATGCAAAACATG 57.627 29.630 21.57 0.00 46.85 3.21
2018 2257 8.659925 TTTGTCTTTCATTATGCAAAACATGT 57.340 26.923 0.00 0.00 40.06 3.21
2019 2258 8.659925 TTGTCTTTCATTATGCAAAACATGTT 57.340 26.923 4.92 4.92 40.06 2.71
2020 2259 9.755804 TTGTCTTTCATTATGCAAAACATGTTA 57.244 25.926 12.39 0.00 40.06 2.41
2021 2260 9.409312 TGTCTTTCATTATGCAAAACATGTTAG 57.591 29.630 12.39 8.97 40.06 2.34
2022 2261 8.863049 GTCTTTCATTATGCAAAACATGTTAGG 58.137 33.333 12.39 8.23 40.06 2.69
2023 2262 8.801299 TCTTTCATTATGCAAAACATGTTAGGA 58.199 29.630 12.39 9.48 40.06 2.94
2024 2263 8.984891 TTTCATTATGCAAAACATGTTAGGAG 57.015 30.769 12.39 3.49 40.06 3.69
2027 2266 8.892723 TCATTATGCAAAACATGTTAGGAGTAG 58.107 33.333 12.39 2.06 40.06 2.57
2038 2277 9.574516 AACATGTTAGGAGTAGAACAGAATTTT 57.425 29.630 9.97 0.00 38.86 1.82
2058 2297 6.899393 TTTTGTTCTGATGCCACTTCTTAT 57.101 33.333 0.00 0.00 0.00 1.73
2068 2307 7.056006 TGATGCCACTTCTTATATGTGATGTT 58.944 34.615 0.00 0.00 35.72 2.71
2135 2374 2.423538 GAGCGGATACTGCAATGGTTTT 59.576 45.455 5.39 0.00 38.34 2.43
2559 2798 3.194005 AGACGAACAAAGGCTTCTTCA 57.806 42.857 0.00 0.00 0.00 3.02
2602 2841 2.349590 CTCATCAGTCCGAATGCACAA 58.650 47.619 0.00 0.00 0.00 3.33
2762 3001 3.378339 GAAGAACACGAGGAAGAACGAA 58.622 45.455 0.00 0.00 0.00 3.85
2938 3177 4.082949 TGCAAATCAGCTGATTCTTGTGAG 60.083 41.667 35.67 21.34 43.41 3.51
3009 3248 0.733729 TTGGTTCAAAACGACGGGTG 59.266 50.000 0.00 0.00 0.00 4.61
3271 3512 4.189231 CCTTCCCTGTACTATTTCAACCG 58.811 47.826 0.00 0.00 0.00 4.44
3468 3709 6.091986 GCTTCTCTGGTGAAGTAATCTTTGAG 59.908 42.308 12.09 0.00 43.74 3.02
3495 3736 6.934056 TGGAGCTGTTTATACATGCATTTTT 58.066 32.000 0.00 0.00 33.57 1.94
3557 3798 5.823312 TGGTAAGTGATCGCCTCCTATATA 58.177 41.667 1.76 0.00 0.00 0.86
3637 3880 7.153315 AGTCTGTAAACTTTAGAACCTGTAGC 58.847 38.462 0.00 0.00 0.00 3.58
3648 3891 4.826556 AGAACCTGTAGCTTGATGACTTC 58.173 43.478 0.00 0.00 0.00 3.01
3738 3982 6.129168 CGTAAATATCACGTAGTTCCAGCATC 60.129 42.308 0.00 0.00 41.61 3.91
3747 3991 5.097529 CGTAGTTCCAGCATCGTTTTACTA 58.902 41.667 0.00 0.00 0.00 1.82
3748 3992 5.574055 CGTAGTTCCAGCATCGTTTTACTAA 59.426 40.000 0.00 0.00 0.00 2.24
3760 4004 6.563398 TCGTTTTACTAACATATGACGCTG 57.437 37.500 10.38 0.00 0.00 5.18
3827 4076 8.458573 TTTGGATGTGTTAACTGTATGAGTTT 57.541 30.769 7.22 0.00 42.70 2.66
3840 4089 0.249868 TGAGTTTGCACGAGACCCTG 60.250 55.000 0.00 0.00 0.00 4.45
3842 4091 2.281484 TTTGCACGAGACCCTGGC 60.281 61.111 0.00 0.00 0.00 4.85
3903 4152 3.004734 CCAATGGAAATTCCGGCTACATC 59.995 47.826 7.60 0.00 40.17 3.06
3958 4207 5.799681 ACAAGTTTGAATGCTGTTTTTGG 57.200 34.783 0.00 0.00 0.00 3.28
3982 4234 6.696148 GGTATTACAGATCTTAGTGTTGACCG 59.304 42.308 0.00 0.00 0.00 4.79
3983 4235 5.717078 TTACAGATCTTAGTGTTGACCGT 57.283 39.130 0.00 0.00 0.00 4.83
4016 4268 9.425577 GTAGTAGAAACTAATCTGCAGTTCTTT 57.574 33.333 17.14 10.53 39.90 2.52
4022 4274 6.707599 ACTAATCTGCAGTTCTTTCGTAAC 57.292 37.500 14.67 0.00 0.00 2.50
4039 4291 0.461339 AACATGACCCGGCGATACAC 60.461 55.000 9.30 0.00 0.00 2.90
4040 4292 1.327690 ACATGACCCGGCGATACACT 61.328 55.000 9.30 0.00 0.00 3.55
4181 4435 4.219115 TGGGTGCAAAGTCTCCATTTTTA 58.781 39.130 0.00 0.00 0.00 1.52
4182 4436 4.651503 TGGGTGCAAAGTCTCCATTTTTAA 59.348 37.500 0.00 0.00 0.00 1.52
4208 4462 9.574516 ACCTTCACAATGGAAAATATATACTCC 57.425 33.333 6.19 6.19 0.00 3.85
4209 4463 9.014297 CCTTCACAATGGAAAATATATACTCCC 57.986 37.037 9.49 0.36 0.00 4.30
4210 4464 9.799106 CTTCACAATGGAAAATATATACTCCCT 57.201 33.333 9.49 0.00 0.00 4.20
4211 4465 9.793259 TTCACAATGGAAAATATATACTCCCTC 57.207 33.333 9.49 0.00 0.00 4.30
4212 4466 8.383175 TCACAATGGAAAATATATACTCCCTCC 58.617 37.037 9.49 0.00 0.00 4.30
4213 4467 8.163408 CACAATGGAAAATATATACTCCCTCCA 58.837 37.037 9.49 0.00 36.23 3.86
4214 4468 8.904963 ACAATGGAAAATATATACTCCCTCCAT 58.095 33.333 9.49 0.00 42.79 3.41
4215 4469 9.401058 CAATGGAAAATATATACTCCCTCCATC 57.599 37.037 11.31 0.00 40.67 3.51
4216 4470 8.940012 ATGGAAAATATATACTCCCTCCATCT 57.060 34.615 9.49 0.00 37.82 2.90
4217 4471 8.150827 TGGAAAATATATACTCCCTCCATCTG 57.849 38.462 9.49 0.00 0.00 2.90
4218 4472 7.961431 TGGAAAATATATACTCCCTCCATCTGA 59.039 37.037 9.49 0.00 0.00 3.27
4219 4473 8.826765 GGAAAATATATACTCCCTCCATCTGAA 58.173 37.037 2.73 0.00 0.00 3.02
4225 4479 8.980832 ATATACTCCCTCCATCTGAAAATACT 57.019 34.615 0.00 0.00 0.00 2.12
4226 4480 7.698163 ATACTCCCTCCATCTGAAAATACTT 57.302 36.000 0.00 0.00 0.00 2.24
4227 4481 5.749462 ACTCCCTCCATCTGAAAATACTTG 58.251 41.667 0.00 0.00 0.00 3.16
4228 4482 5.251700 ACTCCCTCCATCTGAAAATACTTGT 59.748 40.000 0.00 0.00 0.00 3.16
4229 4483 5.745227 TCCCTCCATCTGAAAATACTTGTC 58.255 41.667 0.00 0.00 0.00 3.18
4230 4484 5.250543 TCCCTCCATCTGAAAATACTTGTCA 59.749 40.000 0.00 0.00 0.00 3.58
4231 4485 6.069440 TCCCTCCATCTGAAAATACTTGTCAT 60.069 38.462 0.00 0.00 0.00 3.06
4232 4486 6.261826 CCCTCCATCTGAAAATACTTGTCATC 59.738 42.308 0.00 0.00 0.00 2.92
4233 4487 6.825213 CCTCCATCTGAAAATACTTGTCATCA 59.175 38.462 0.00 0.00 0.00 3.07
4234 4488 7.337689 CCTCCATCTGAAAATACTTGTCATCAA 59.662 37.037 0.00 0.00 0.00 2.57
4235 4489 8.634335 TCCATCTGAAAATACTTGTCATCAAA 57.366 30.769 0.00 0.00 32.87 2.69
4236 4490 9.076781 TCCATCTGAAAATACTTGTCATCAAAA 57.923 29.630 0.00 0.00 32.87 2.44
4237 4491 9.865321 CCATCTGAAAATACTTGTCATCAAAAT 57.135 29.630 0.00 0.00 32.87 1.82
4239 4493 9.865321 ATCTGAAAATACTTGTCATCAAAATGG 57.135 29.630 0.00 0.00 33.42 3.16
4240 4494 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
4241 4495 9.865321 CTGAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
4249 4503 9.480053 ACTTGTCATCAAAATGGATAAAAAGTG 57.520 29.630 0.00 0.00 33.42 3.16
4250 4504 9.695526 CTTGTCATCAAAATGGATAAAAAGTGA 57.304 29.630 0.00 0.00 33.42 3.41
4252 4506 9.642327 TGTCATCAAAATGGATAAAAAGTGATG 57.358 29.630 0.00 0.00 41.46 3.07
4253 4507 9.643693 GTCATCAAAATGGATAAAAAGTGATGT 57.356 29.630 9.42 0.00 41.09 3.06
4318 4572 8.871125 TCTATTTTGATGATAAGTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
4319 4573 5.531122 TTTGATGATAAGTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
4320 4574 4.180377 TGATGATAAGTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
4321 4575 4.543689 TGATGATAAGTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
4322 4576 4.583489 TGATGATAAGTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
4323 4577 3.294214 TGATAAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
4324 4578 3.053095 TGATAAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
4325 4579 4.166725 TGATAAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
4326 4580 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4327 4581 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4328 4582 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4329 4583 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4330 4584 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4331 4585 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4332 4586 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4333 4587 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4334 4588 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4335 4589 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4336 4590 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4337 4591 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4338 4592 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4339 4593 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4340 4594 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4341 4595 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4342 4596 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4343 4597 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4357 4611 6.531503 TCTTTCTAGACATTTCCGATGACT 57.468 37.500 0.00 0.00 0.00 3.41
4358 4612 7.640597 TCTTTCTAGACATTTCCGATGACTA 57.359 36.000 0.00 0.00 0.00 2.59
4359 4613 7.481642 TCTTTCTAGACATTTCCGATGACTAC 58.518 38.462 0.00 0.00 0.00 2.73
4360 4614 7.339721 TCTTTCTAGACATTTCCGATGACTACT 59.660 37.037 0.00 0.00 0.00 2.57
4361 4615 8.515695 TTTCTAGACATTTCCGATGACTACTA 57.484 34.615 0.00 0.00 0.00 1.82
4362 4616 7.493743 TCTAGACATTTCCGATGACTACTAC 57.506 40.000 0.00 0.00 0.00 2.73
4363 4617 7.052248 TCTAGACATTTCCGATGACTACTACA 58.948 38.462 0.00 0.00 0.00 2.74
4364 4618 6.716934 AGACATTTCCGATGACTACTACAT 57.283 37.500 0.00 0.00 0.00 2.29
4365 4619 7.818997 AGACATTTCCGATGACTACTACATA 57.181 36.000 0.00 0.00 0.00 2.29
4366 4620 7.649973 AGACATTTCCGATGACTACTACATAC 58.350 38.462 0.00 0.00 0.00 2.39
4367 4621 6.436261 ACATTTCCGATGACTACTACATACG 58.564 40.000 0.00 0.00 0.00 3.06
4368 4622 5.428496 TTTCCGATGACTACTACATACGG 57.572 43.478 0.00 0.00 38.47 4.02
4369 4623 4.341366 TCCGATGACTACTACATACGGA 57.659 45.455 0.00 0.00 40.81 4.69
4370 4624 4.903054 TCCGATGACTACTACATACGGAT 58.097 43.478 0.00 0.00 39.65 4.18
4371 4625 4.694037 TCCGATGACTACTACATACGGATG 59.306 45.833 5.94 5.94 39.65 3.51
4373 4627 5.640783 CCGATGACTACTACATACGGATGTA 59.359 44.000 19.32 19.32 44.77 2.29
4374 4628 6.315642 CCGATGACTACTACATACGGATGTAT 59.684 42.308 20.64 13.02 45.42 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.685517 CTCCAATCAGATGCGAGAGGA 59.314 52.381 2.04 0.00 0.00 3.71
2 3 1.270199 CCTCCAATCAGATGCGAGAGG 60.270 57.143 8.11 6.33 33.99 3.69
3 4 1.685517 TCCTCCAATCAGATGCGAGAG 59.314 52.381 8.11 1.88 0.00 3.20
4 5 1.780503 TCCTCCAATCAGATGCGAGA 58.219 50.000 8.11 0.00 0.00 4.04
5 6 2.102084 TCTTCCTCCAATCAGATGCGAG 59.898 50.000 0.00 1.41 0.00 5.03
7 8 2.102084 TCTCTTCCTCCAATCAGATGCG 59.898 50.000 0.00 0.00 0.00 4.73
8 9 3.465871 GTCTCTTCCTCCAATCAGATGC 58.534 50.000 0.00 0.00 0.00 3.91
9 10 3.131933 ACGTCTCTTCCTCCAATCAGATG 59.868 47.826 0.00 0.00 0.00 2.90
10 11 3.131933 CACGTCTCTTCCTCCAATCAGAT 59.868 47.826 0.00 0.00 0.00 2.90
11 12 2.493675 CACGTCTCTTCCTCCAATCAGA 59.506 50.000 0.00 0.00 0.00 3.27
12 13 2.417924 CCACGTCTCTTCCTCCAATCAG 60.418 54.545 0.00 0.00 0.00 2.90
13 14 1.550524 CCACGTCTCTTCCTCCAATCA 59.449 52.381 0.00 0.00 0.00 2.57
14 15 1.740718 GCCACGTCTCTTCCTCCAATC 60.741 57.143 0.00 0.00 0.00 2.67
15 16 0.250513 GCCACGTCTCTTCCTCCAAT 59.749 55.000 0.00 0.00 0.00 3.16
16 17 1.671742 GCCACGTCTCTTCCTCCAA 59.328 57.895 0.00 0.00 0.00 3.53
17 18 2.636412 CGCCACGTCTCTTCCTCCA 61.636 63.158 0.00 0.00 0.00 3.86
18 19 2.182030 CGCCACGTCTCTTCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
19 20 2.182030 CCGCCACGTCTCTTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
20 21 4.070552 GCCGCCACGTCTCTTCCT 62.071 66.667 0.00 0.00 0.00 3.36
42 43 4.007644 TCGGGCTGCTGACAGTGG 62.008 66.667 3.99 0.00 46.30 4.00
43 44 2.740055 GTCGGGCTGCTGACAGTG 60.740 66.667 16.73 0.00 46.30 3.66
44 45 4.008933 GGTCGGGCTGCTGACAGT 62.009 66.667 20.96 0.00 46.30 3.55
62 63 1.747745 GGTGAACATACGGGCCACC 60.748 63.158 4.39 0.00 40.20 4.61
63 64 1.003112 TGGTGAACATACGGGCCAC 60.003 57.895 4.39 0.00 0.00 5.01
64 65 1.003112 GTGGTGAACATACGGGCCA 60.003 57.895 4.39 0.00 0.00 5.36
65 66 1.003112 TGTGGTGAACATACGGGCC 60.003 57.895 0.00 0.00 32.36 5.80
66 67 1.024579 CCTGTGGTGAACATACGGGC 61.025 60.000 0.00 0.00 38.39 6.13
67 68 0.611200 TCCTGTGGTGAACATACGGG 59.389 55.000 11.26 11.26 41.27 5.28
68 69 1.548719 TCTCCTGTGGTGAACATACGG 59.451 52.381 0.00 0.00 38.39 4.02
69 70 2.492088 TCTCTCCTGTGGTGAACATACG 59.508 50.000 0.00 0.00 38.39 3.06
70 71 4.744795 ATCTCTCCTGTGGTGAACATAC 57.255 45.455 0.00 0.00 38.39 2.39
71 72 5.958380 AGTTATCTCTCCTGTGGTGAACATA 59.042 40.000 0.00 0.00 38.39 2.29
72 73 4.780021 AGTTATCTCTCCTGTGGTGAACAT 59.220 41.667 0.00 0.00 38.39 2.71
73 74 4.160329 AGTTATCTCTCCTGTGGTGAACA 58.840 43.478 0.00 0.00 37.22 3.18
74 75 4.464597 AGAGTTATCTCTCCTGTGGTGAAC 59.535 45.833 0.00 0.00 46.84 3.18
75 76 4.678256 AGAGTTATCTCTCCTGTGGTGAA 58.322 43.478 0.00 0.00 46.84 3.18
76 77 4.323569 AGAGTTATCTCTCCTGTGGTGA 57.676 45.455 0.00 0.00 46.84 4.02
88 89 1.066587 GCAGCGGCGAGAGTTATCT 59.933 57.895 12.98 0.00 38.98 1.98
89 90 1.951631 GGCAGCGGCGAGAGTTATC 60.952 63.158 12.98 0.00 42.47 1.75
90 91 2.107141 GGCAGCGGCGAGAGTTAT 59.893 61.111 12.98 0.00 42.47 1.89
100 101 4.208686 GTCCTACTCCGGCAGCGG 62.209 72.222 0.00 0.00 0.00 5.52
101 102 3.127352 GAGTCCTACTCCGGCAGCG 62.127 68.421 0.00 0.00 39.28 5.18
102 103 2.809010 GAGTCCTACTCCGGCAGC 59.191 66.667 0.00 0.00 39.28 5.25
103 104 1.716826 GACGAGTCCTACTCCGGCAG 61.717 65.000 0.00 0.00 42.12 4.85
104 105 1.748122 GACGAGTCCTACTCCGGCA 60.748 63.158 0.00 0.00 42.12 5.69
105 106 2.821688 CGACGAGTCCTACTCCGGC 61.822 68.421 0.00 0.00 42.12 6.13
106 107 2.178890 CCGACGAGTCCTACTCCGG 61.179 68.421 0.00 0.00 42.12 5.14
107 108 2.821688 GCCGACGAGTCCTACTCCG 61.822 68.421 0.00 1.02 42.12 4.63
108 109 2.821688 CGCCGACGAGTCCTACTCC 61.822 68.421 0.00 0.00 42.12 3.85
109 110 1.812922 TCGCCGACGAGTCCTACTC 60.813 63.158 0.00 0.00 45.12 2.59
110 111 2.267006 TCGCCGACGAGTCCTACT 59.733 61.111 0.00 0.00 45.12 2.57
120 121 1.058903 GAAATTGCTCGTCGCCGAC 59.941 57.895 7.29 7.29 38.40 4.79
121 122 2.441378 CGAAATTGCTCGTCGCCGA 61.441 57.895 0.00 0.00 41.73 5.54
122 123 2.020016 CGAAATTGCTCGTCGCCG 59.980 61.111 0.00 0.00 38.05 6.46
123 124 1.345176 CTCGAAATTGCTCGTCGCC 59.655 57.895 0.00 0.00 39.84 5.54
124 125 1.296216 GCTCGAAATTGCTCGTCGC 60.296 57.895 0.00 1.43 39.84 5.19
125 126 1.345176 GGCTCGAAATTGCTCGTCG 59.655 57.895 0.00 0.00 39.84 5.12
126 127 0.095417 GTGGCTCGAAATTGCTCGTC 59.905 55.000 0.00 0.00 39.84 4.20
127 128 0.602638 TGTGGCTCGAAATTGCTCGT 60.603 50.000 0.00 0.00 39.84 4.18
128 129 0.095935 CTGTGGCTCGAAATTGCTCG 59.904 55.000 0.00 0.00 40.25 5.03
129 130 1.396301 CTCTGTGGCTCGAAATTGCTC 59.604 52.381 0.00 0.00 0.00 4.26
130 131 1.446907 CTCTGTGGCTCGAAATTGCT 58.553 50.000 0.00 0.00 0.00 3.91
131 132 0.179179 GCTCTGTGGCTCGAAATTGC 60.179 55.000 0.00 0.00 0.00 3.56
132 133 1.159285 TGCTCTGTGGCTCGAAATTG 58.841 50.000 0.00 0.00 0.00 2.32
133 134 2.119801 ATGCTCTGTGGCTCGAAATT 57.880 45.000 0.00 0.00 0.00 1.82
134 135 2.988010 TATGCTCTGTGGCTCGAAAT 57.012 45.000 0.00 0.00 0.00 2.17
135 136 2.621338 CTTATGCTCTGTGGCTCGAAA 58.379 47.619 0.00 0.00 0.00 3.46
136 137 1.740380 GCTTATGCTCTGTGGCTCGAA 60.740 52.381 0.00 0.00 36.03 3.71
137 138 0.179100 GCTTATGCTCTGTGGCTCGA 60.179 55.000 0.00 0.00 36.03 4.04
138 139 2.305405 GCTTATGCTCTGTGGCTCG 58.695 57.895 0.00 0.00 36.03 5.03
144 145 8.514363 GACAGTGGTCTAAGCTTATGCTCTGT 62.514 46.154 20.57 20.57 44.01 3.41
145 146 6.190408 GACAGTGGTCTAAGCTTATGCTCTG 61.190 48.000 6.64 13.43 44.01 3.35
146 147 4.142049 GACAGTGGTCTAAGCTTATGCTCT 60.142 45.833 6.64 0.20 44.01 4.09
147 148 4.116238 GACAGTGGTCTAAGCTTATGCTC 58.884 47.826 6.64 0.00 44.01 4.26
148 149 4.130286 GACAGTGGTCTAAGCTTATGCT 57.870 45.455 6.64 0.00 45.45 3.79
149 150 3.861840 TGACAGTGGTCTAAGCTTATGC 58.138 45.455 6.64 2.90 44.61 3.14
150 151 5.078411 ACTGACAGTGGTCTAAGCTTATG 57.922 43.478 7.47 3.82 44.61 1.90
151 152 4.160626 GGACTGACAGTGGTCTAAGCTTAT 59.839 45.833 14.14 0.00 44.61 1.73
152 153 3.510360 GGACTGACAGTGGTCTAAGCTTA 59.490 47.826 14.14 5.94 44.61 3.09
153 154 2.300437 GGACTGACAGTGGTCTAAGCTT 59.700 50.000 14.14 3.48 44.61 3.74
154 155 1.896465 GGACTGACAGTGGTCTAAGCT 59.104 52.381 14.14 0.00 44.61 3.74
155 156 1.896465 AGGACTGACAGTGGTCTAAGC 59.104 52.381 14.14 0.00 44.61 3.09
156 157 3.157881 TCAGGACTGACAGTGGTCTAAG 58.842 50.000 14.14 0.00 44.61 2.18
157 158 3.238788 TCAGGACTGACAGTGGTCTAA 57.761 47.619 14.14 0.00 44.61 2.10
158 159 2.971901 TCAGGACTGACAGTGGTCTA 57.028 50.000 14.14 0.00 44.61 2.59
159 160 3.850454 TCAGGACTGACAGTGGTCT 57.150 52.632 14.14 4.91 44.61 3.85
168 169 0.467474 ACGGTGAGTGTCAGGACTGA 60.467 55.000 0.00 0.00 37.24 3.41
169 170 0.389391 AACGGTGAGTGTCAGGACTG 59.611 55.000 0.65 0.00 0.00 3.51
170 171 1.887198 CTAACGGTGAGTGTCAGGACT 59.113 52.381 0.65 0.00 0.00 3.85
171 172 1.884579 TCTAACGGTGAGTGTCAGGAC 59.115 52.381 0.00 0.00 0.00 3.85
172 173 2.281539 TCTAACGGTGAGTGTCAGGA 57.718 50.000 0.00 0.00 0.00 3.86
173 174 3.057734 GTTTCTAACGGTGAGTGTCAGG 58.942 50.000 0.00 0.00 0.00 3.86
186 187 3.802685 CAGGATCCGATTCCGTTTCTAAC 59.197 47.826 5.98 0.00 40.94 2.34
187 188 3.181469 CCAGGATCCGATTCCGTTTCTAA 60.181 47.826 5.98 0.00 40.94 2.10
188 189 2.364324 CCAGGATCCGATTCCGTTTCTA 59.636 50.000 5.98 0.00 40.94 2.10
189 190 1.139058 CCAGGATCCGATTCCGTTTCT 59.861 52.381 5.98 0.00 40.94 2.52
190 191 1.583054 CCAGGATCCGATTCCGTTTC 58.417 55.000 5.98 0.00 40.94 2.78
191 192 0.180406 CCCAGGATCCGATTCCGTTT 59.820 55.000 5.98 0.00 40.94 3.60
192 193 0.689745 TCCCAGGATCCGATTCCGTT 60.690 55.000 5.98 0.00 40.94 4.44
193 194 0.471971 ATCCCAGGATCCGATTCCGT 60.472 55.000 5.98 0.00 40.94 4.69
194 195 1.557099 TATCCCAGGATCCGATTCCG 58.443 55.000 5.98 0.00 40.94 4.30
195 196 2.027100 GGTTATCCCAGGATCCGATTCC 60.027 54.545 5.98 6.27 36.17 3.01
196 197 2.907042 AGGTTATCCCAGGATCCGATTC 59.093 50.000 5.98 1.23 36.17 2.52
197 198 2.991580 AGGTTATCCCAGGATCCGATT 58.008 47.619 5.98 0.00 36.17 3.34
198 199 2.723530 AGGTTATCCCAGGATCCGAT 57.276 50.000 5.98 5.99 36.17 4.18
199 200 2.720254 TCTAGGTTATCCCAGGATCCGA 59.280 50.000 5.98 0.00 36.17 4.55
200 201 3.093057 CTCTAGGTTATCCCAGGATCCG 58.907 54.545 5.98 1.07 36.17 4.18
201 202 2.835156 GCTCTAGGTTATCCCAGGATCC 59.165 54.545 2.48 2.48 36.17 3.36
202 203 3.767131 GAGCTCTAGGTTATCCCAGGATC 59.233 52.174 6.43 0.00 36.17 3.36
203 204 3.785364 GAGCTCTAGGTTATCCCAGGAT 58.215 50.000 6.43 4.27 38.54 3.24
204 205 2.489255 CGAGCTCTAGGTTATCCCAGGA 60.489 54.545 12.85 0.00 34.66 3.86
205 206 1.889829 CGAGCTCTAGGTTATCCCAGG 59.110 57.143 12.85 0.00 34.66 4.45
206 207 1.271102 GCGAGCTCTAGGTTATCCCAG 59.729 57.143 12.85 0.00 34.66 4.45
207 208 1.329256 GCGAGCTCTAGGTTATCCCA 58.671 55.000 12.85 0.00 34.66 4.37
208 209 0.241481 CGCGAGCTCTAGGTTATCCC 59.759 60.000 12.85 0.00 0.00 3.85
209 210 3.777016 CGCGAGCTCTAGGTTATCC 57.223 57.895 12.85 0.00 0.00 2.59
222 223 2.360949 ATCCCACAGAGATGCGCGAG 62.361 60.000 12.10 0.00 0.00 5.03
223 224 1.106944 TATCCCACAGAGATGCGCGA 61.107 55.000 12.10 0.00 0.00 5.87
224 225 0.941463 GTATCCCACAGAGATGCGCG 60.941 60.000 0.00 0.00 0.00 6.86
225 226 0.104855 TGTATCCCACAGAGATGCGC 59.895 55.000 0.00 0.00 31.89 6.09
226 227 2.602257 TTGTATCCCACAGAGATGCG 57.398 50.000 0.00 0.00 38.72 4.73
227 228 3.817647 GGATTTGTATCCCACAGAGATGC 59.182 47.826 0.00 0.00 43.98 3.91
239 240 1.563173 GCGCGTCGGGATTTGTATC 59.437 57.895 14.18 0.00 0.00 2.24
240 241 2.235016 CGCGCGTCGGGATTTGTAT 61.235 57.895 24.19 0.00 42.31 2.29
241 242 2.881827 CGCGCGTCGGGATTTGTA 60.882 61.111 24.19 0.00 42.31 2.41
242 243 4.728102 TCGCGCGTCGGGATTTGT 62.728 61.111 30.98 0.00 43.39 2.83
256 257 3.774702 GTGTTCGCCCGAAGTCGC 61.775 66.667 3.01 0.00 38.18 5.19
257 258 3.110178 GGTGTTCGCCCGAAGTCG 61.110 66.667 3.01 0.00 34.49 4.18
258 259 2.027625 CAGGTGTTCGCCCGAAGTC 61.028 63.158 3.01 0.52 34.49 3.01
259 260 2.030562 CAGGTGTTCGCCCGAAGT 59.969 61.111 3.01 0.00 34.49 3.01
260 261 2.742372 CCAGGTGTTCGCCCGAAG 60.742 66.667 3.01 0.00 34.49 3.79
261 262 3.552384 ACCAGGTGTTCGCCCGAA 61.552 61.111 0.00 0.00 0.00 4.30
262 263 4.308458 CACCAGGTGTTCGCCCGA 62.308 66.667 11.99 0.00 0.00 5.14
264 265 3.485346 TTCCACCAGGTGTTCGCCC 62.485 63.158 18.82 0.00 35.89 6.13
265 266 2.112297 TTCCACCAGGTGTTCGCC 59.888 61.111 18.82 0.00 35.89 5.54
266 267 2.258726 GGTTCCACCAGGTGTTCGC 61.259 63.158 18.82 5.60 38.42 4.70
267 268 1.147376 TGGTTCCACCAGGTGTTCG 59.853 57.895 18.82 3.36 44.79 3.95
291 292 3.507009 GAGAGACCGACCGACCCG 61.507 72.222 0.00 0.00 0.00 5.28
292 293 2.045143 AGAGAGACCGACCGACCC 60.045 66.667 0.00 0.00 0.00 4.46
293 294 2.114051 GGAGAGAGACCGACCGACC 61.114 68.421 0.00 0.00 0.00 4.79
294 295 2.114051 GGGAGAGAGACCGACCGAC 61.114 68.421 0.00 0.00 0.00 4.79
295 296 2.271497 GGGAGAGAGACCGACCGA 59.729 66.667 0.00 0.00 0.00 4.69
296 297 2.829458 GGGGAGAGAGACCGACCG 60.829 72.222 0.00 0.00 0.00 4.79
297 298 1.454295 GAGGGGAGAGAGACCGACC 60.454 68.421 0.00 0.00 0.00 4.79
298 299 0.033894 AAGAGGGGAGAGAGACCGAC 60.034 60.000 0.00 0.00 0.00 4.79
299 300 0.705253 AAAGAGGGGAGAGAGACCGA 59.295 55.000 0.00 0.00 0.00 4.69
300 301 1.205893 CAAAAGAGGGGAGAGAGACCG 59.794 57.143 0.00 0.00 0.00 4.79
301 302 2.261729 ACAAAAGAGGGGAGAGAGACC 58.738 52.381 0.00 0.00 0.00 3.85
302 303 3.071747 ACAACAAAAGAGGGGAGAGAGAC 59.928 47.826 0.00 0.00 0.00 3.36
303 304 3.318313 ACAACAAAAGAGGGGAGAGAGA 58.682 45.455 0.00 0.00 0.00 3.10
304 305 3.778954 ACAACAAAAGAGGGGAGAGAG 57.221 47.619 0.00 0.00 0.00 3.20
305 306 3.202151 ACAACAACAAAAGAGGGGAGAGA 59.798 43.478 0.00 0.00 0.00 3.10
306 307 3.555966 ACAACAACAAAAGAGGGGAGAG 58.444 45.455 0.00 0.00 0.00 3.20
307 308 3.662759 ACAACAACAAAAGAGGGGAGA 57.337 42.857 0.00 0.00 0.00 3.71
308 309 5.126384 TGTTAACAACAACAAAAGAGGGGAG 59.874 40.000 5.64 0.00 38.72 4.30
309 310 5.017490 TGTTAACAACAACAAAAGAGGGGA 58.983 37.500 5.64 0.00 38.72 4.81
310 311 5.331876 TGTTAACAACAACAAAAGAGGGG 57.668 39.130 5.64 0.00 38.72 4.79
322 323 1.249407 GGCCCCGATTGTTAACAACA 58.751 50.000 22.78 2.52 38.86 3.33
323 324 1.249407 TGGCCCCGATTGTTAACAAC 58.751 50.000 22.78 14.99 38.86 3.32
324 325 1.996798 TTGGCCCCGATTGTTAACAA 58.003 45.000 22.58 22.58 40.51 2.83
325 326 2.223803 ATTGGCCCCGATTGTTAACA 57.776 45.000 3.59 3.59 0.00 2.41
326 327 3.258228 CAAATTGGCCCCGATTGTTAAC 58.742 45.455 0.00 0.00 30.99 2.01
327 328 2.234908 CCAAATTGGCCCCGATTGTTAA 59.765 45.455 0.00 0.00 30.99 2.01
328 329 1.827969 CCAAATTGGCCCCGATTGTTA 59.172 47.619 0.00 0.00 30.99 2.41
329 330 0.612744 CCAAATTGGCCCCGATTGTT 59.387 50.000 0.00 0.00 30.99 2.83
330 331 0.544120 ACCAAATTGGCCCCGATTGT 60.544 50.000 12.67 0.00 42.67 2.71
331 332 0.612744 AACCAAATTGGCCCCGATTG 59.387 50.000 12.67 0.05 42.67 2.67
332 333 0.901827 GAACCAAATTGGCCCCGATT 59.098 50.000 12.67 0.00 42.67 3.34
333 334 0.252012 TGAACCAAATTGGCCCCGAT 60.252 50.000 12.67 0.00 42.67 4.18
334 335 0.252012 ATGAACCAAATTGGCCCCGA 60.252 50.000 12.67 0.00 42.67 5.14
335 336 1.408702 CTATGAACCAAATTGGCCCCG 59.591 52.381 12.67 0.00 42.67 5.73
336 337 2.695147 CTCTATGAACCAAATTGGCCCC 59.305 50.000 12.67 2.00 42.67 5.80
337 338 2.101415 GCTCTATGAACCAAATTGGCCC 59.899 50.000 12.67 4.62 42.67 5.80
338 339 2.760092 TGCTCTATGAACCAAATTGGCC 59.240 45.455 12.67 5.00 42.67 5.36
339 340 4.454728 TTGCTCTATGAACCAAATTGGC 57.545 40.909 12.67 0.00 42.67 4.52
340 341 8.253113 AGTATTTTGCTCTATGAACCAAATTGG 58.747 33.333 11.02 11.02 45.02 3.16
341 342 9.079833 CAGTATTTTGCTCTATGAACCAAATTG 57.920 33.333 0.00 0.00 0.00 2.32
342 343 8.253113 CCAGTATTTTGCTCTATGAACCAAATT 58.747 33.333 0.00 0.00 0.00 1.82
343 344 7.631377 GCCAGTATTTTGCTCTATGAACCAAAT 60.631 37.037 0.00 0.00 0.00 2.32
344 345 6.350110 GCCAGTATTTTGCTCTATGAACCAAA 60.350 38.462 0.00 0.00 0.00 3.28
345 346 5.125417 GCCAGTATTTTGCTCTATGAACCAA 59.875 40.000 0.00 0.00 0.00 3.67
346 347 4.640201 GCCAGTATTTTGCTCTATGAACCA 59.360 41.667 0.00 0.00 0.00 3.67
347 348 4.640201 TGCCAGTATTTTGCTCTATGAACC 59.360 41.667 0.00 0.00 0.00 3.62
348 349 5.818136 TGCCAGTATTTTGCTCTATGAAC 57.182 39.130 0.00 0.00 0.00 3.18
349 350 5.887598 ACATGCCAGTATTTTGCTCTATGAA 59.112 36.000 0.00 0.00 0.00 2.57
350 351 5.439721 ACATGCCAGTATTTTGCTCTATGA 58.560 37.500 0.00 0.00 0.00 2.15
351 352 5.297527 TGACATGCCAGTATTTTGCTCTATG 59.702 40.000 0.00 0.00 0.00 2.23
352 353 5.439721 TGACATGCCAGTATTTTGCTCTAT 58.560 37.500 0.00 0.00 0.00 1.98
353 354 4.842574 TGACATGCCAGTATTTTGCTCTA 58.157 39.130 0.00 0.00 0.00 2.43
354 355 3.689347 TGACATGCCAGTATTTTGCTCT 58.311 40.909 0.00 0.00 0.00 4.09
355 356 4.439305 TTGACATGCCAGTATTTTGCTC 57.561 40.909 0.00 0.00 0.00 4.26
356 357 4.870123 TTTGACATGCCAGTATTTTGCT 57.130 36.364 0.00 0.00 0.00 3.91
357 358 6.473455 GTCTATTTGACATGCCAGTATTTTGC 59.527 38.462 0.00 0.00 44.73 3.68
358 359 7.975866 GTCTATTTGACATGCCAGTATTTTG 57.024 36.000 0.00 0.00 44.73 2.44
374 375 9.619727 CGATTTCGTTACACTTATGTCTATTTG 57.380 33.333 0.00 0.00 35.99 2.32
375 376 9.577110 TCGATTTCGTTACACTTATGTCTATTT 57.423 29.630 0.00 0.00 39.26 1.40
376 377 9.017669 GTCGATTTCGTTACACTTATGTCTATT 57.982 33.333 0.00 0.00 39.26 1.73
377 378 7.375280 CGTCGATTTCGTTACACTTATGTCTAT 59.625 37.037 0.00 0.00 39.26 1.98
378 379 6.684131 CGTCGATTTCGTTACACTTATGTCTA 59.316 38.462 0.00 0.00 39.26 2.59
379 380 5.510674 CGTCGATTTCGTTACACTTATGTCT 59.489 40.000 0.00 0.00 39.26 3.41
380 381 5.275602 CCGTCGATTTCGTTACACTTATGTC 60.276 44.000 0.00 0.00 39.26 3.06
381 382 4.560035 CCGTCGATTTCGTTACACTTATGT 59.440 41.667 0.00 0.00 40.64 2.29
382 383 4.794762 TCCGTCGATTTCGTTACACTTATG 59.205 41.667 0.00 0.00 40.80 1.90
383 384 4.985413 TCCGTCGATTTCGTTACACTTAT 58.015 39.130 0.00 0.00 40.80 1.73
384 385 4.418013 TCCGTCGATTTCGTTACACTTA 57.582 40.909 0.00 0.00 40.80 2.24
385 386 3.287312 TCCGTCGATTTCGTTACACTT 57.713 42.857 0.00 0.00 40.80 3.16
386 387 2.995466 TCCGTCGATTTCGTTACACT 57.005 45.000 0.00 0.00 40.80 3.55
387 388 4.320491 CATTTCCGTCGATTTCGTTACAC 58.680 43.478 0.00 0.00 40.80 2.90
388 389 3.181528 GCATTTCCGTCGATTTCGTTACA 60.182 43.478 0.00 0.00 40.80 2.41
389 390 3.339695 GCATTTCCGTCGATTTCGTTAC 58.660 45.455 0.00 0.00 40.80 2.50
390 391 2.349275 GGCATTTCCGTCGATTTCGTTA 59.651 45.455 0.00 0.00 40.80 3.18
391 392 1.129811 GGCATTTCCGTCGATTTCGTT 59.870 47.619 0.00 0.00 40.80 3.85
392 393 0.725117 GGCATTTCCGTCGATTTCGT 59.275 50.000 0.00 0.00 40.80 3.85
393 394 0.724549 TGGCATTTCCGTCGATTTCG 59.275 50.000 0.00 0.00 37.80 3.46
394 395 3.181501 TGAATGGCATTTCCGTCGATTTC 60.182 43.478 14.93 0.00 37.80 2.17
395 396 2.752354 TGAATGGCATTTCCGTCGATTT 59.248 40.909 14.93 0.00 37.80 2.17
396 397 2.355756 CTGAATGGCATTTCCGTCGATT 59.644 45.455 14.93 0.00 37.80 3.34
397 398 1.942657 CTGAATGGCATTTCCGTCGAT 59.057 47.619 14.93 0.00 37.80 3.59
398 399 1.368641 CTGAATGGCATTTCCGTCGA 58.631 50.000 14.93 0.00 37.80 4.20
399 400 0.378257 CCTGAATGGCATTTCCGTCG 59.622 55.000 14.93 0.07 37.80 5.12
400 401 0.740737 CCCTGAATGGCATTTCCGTC 59.259 55.000 14.93 1.38 37.80 4.79
401 402 0.331278 TCCCTGAATGGCATTTCCGT 59.669 50.000 14.93 0.00 37.80 4.69
402 403 1.406539 CTTCCCTGAATGGCATTTCCG 59.593 52.381 14.93 5.84 37.80 4.30
403 404 1.758862 CCTTCCCTGAATGGCATTTCC 59.241 52.381 14.93 2.95 0.00 3.13
404 405 2.738743 TCCTTCCCTGAATGGCATTTC 58.261 47.619 14.93 8.27 0.00 2.17
405 406 2.925966 TCCTTCCCTGAATGGCATTT 57.074 45.000 14.93 0.00 0.00 2.32
406 407 2.925966 TTCCTTCCCTGAATGGCATT 57.074 45.000 13.54 13.54 0.00 3.56
407 408 2.674420 CATTCCTTCCCTGAATGGCAT 58.326 47.619 0.00 0.00 43.36 4.40
408 409 2.148446 CATTCCTTCCCTGAATGGCA 57.852 50.000 5.32 0.00 43.36 4.92
412 413 4.166725 TGCATCTACATTCCTTCCCTGAAT 59.833 41.667 0.00 0.00 32.77 2.57
413 414 3.523157 TGCATCTACATTCCTTCCCTGAA 59.477 43.478 0.00 0.00 0.00 3.02
414 415 3.114606 TGCATCTACATTCCTTCCCTGA 58.885 45.455 0.00 0.00 0.00 3.86
415 416 3.118112 ACTGCATCTACATTCCTTCCCTG 60.118 47.826 0.00 0.00 0.00 4.45
416 417 3.118112 CACTGCATCTACATTCCTTCCCT 60.118 47.826 0.00 0.00 0.00 4.20
417 418 3.209410 CACTGCATCTACATTCCTTCCC 58.791 50.000 0.00 0.00 0.00 3.97
418 419 3.873952 GACACTGCATCTACATTCCTTCC 59.126 47.826 0.00 0.00 0.00 3.46
419 420 3.553511 CGACACTGCATCTACATTCCTTC 59.446 47.826 0.00 0.00 0.00 3.46
420 421 3.195610 TCGACACTGCATCTACATTCCTT 59.804 43.478 0.00 0.00 0.00 3.36
421 422 2.760650 TCGACACTGCATCTACATTCCT 59.239 45.455 0.00 0.00 0.00 3.36
422 423 3.165058 TCGACACTGCATCTACATTCC 57.835 47.619 0.00 0.00 0.00 3.01
423 424 5.530519 TTTTCGACACTGCATCTACATTC 57.469 39.130 0.00 0.00 0.00 2.67
424 425 5.643348 TCATTTTCGACACTGCATCTACATT 59.357 36.000 0.00 0.00 0.00 2.71
425 426 5.178061 TCATTTTCGACACTGCATCTACAT 58.822 37.500 0.00 0.00 0.00 2.29
426 427 4.565022 TCATTTTCGACACTGCATCTACA 58.435 39.130 0.00 0.00 0.00 2.74
427 428 5.530519 TTCATTTTCGACACTGCATCTAC 57.469 39.130 0.00 0.00 0.00 2.59
428 429 6.741992 AATTCATTTTCGACACTGCATCTA 57.258 33.333 0.00 0.00 0.00 1.98
429 430 5.633830 AATTCATTTTCGACACTGCATCT 57.366 34.783 0.00 0.00 0.00 2.90
430 431 6.695292 AAAATTCATTTTCGACACTGCATC 57.305 33.333 0.00 0.00 35.18 3.91
431 432 8.761575 AATAAAATTCATTTTCGACACTGCAT 57.238 26.923 0.69 0.00 40.24 3.96
432 433 8.586570 AAATAAAATTCATTTTCGACACTGCA 57.413 26.923 0.69 0.00 40.24 4.41
451 452 9.467796 CCCTATTTGGCCCAAAAATAAAATAAA 57.532 29.630 13.87 0.00 36.90 1.40
452 453 8.836735 TCCCTATTTGGCCCAAAAATAAAATAA 58.163 29.630 13.87 0.00 36.90 1.40
453 454 8.393959 TCCCTATTTGGCCCAAAAATAAAATA 57.606 30.769 13.87 0.00 36.90 1.40
454 455 7.277405 TCCCTATTTGGCCCAAAAATAAAAT 57.723 32.000 13.87 0.00 36.90 1.82
455 456 6.704056 TCCCTATTTGGCCCAAAAATAAAA 57.296 33.333 13.87 0.00 36.90 1.52
456 457 6.704056 TTCCCTATTTGGCCCAAAAATAAA 57.296 33.333 13.87 2.00 36.90 1.40
457 458 5.338789 GCTTCCCTATTTGGCCCAAAAATAA 60.339 40.000 13.87 3.27 36.90 1.40
458 459 4.163268 GCTTCCCTATTTGGCCCAAAAATA 59.837 41.667 13.87 1.04 36.90 1.40
459 460 3.054434 GCTTCCCTATTTGGCCCAAAAAT 60.054 43.478 13.87 0.00 36.90 1.82
460 461 2.304470 GCTTCCCTATTTGGCCCAAAAA 59.696 45.455 13.87 1.47 36.90 1.94
461 462 1.905894 GCTTCCCTATTTGGCCCAAAA 59.094 47.619 13.87 2.17 36.90 2.44
462 463 1.203237 TGCTTCCCTATTTGGCCCAAA 60.203 47.619 12.07 12.07 37.75 3.28
463 464 0.411452 TGCTTCCCTATTTGGCCCAA 59.589 50.000 0.00 0.00 0.00 4.12
464 465 0.636101 ATGCTTCCCTATTTGGCCCA 59.364 50.000 0.00 0.00 0.00 5.36
465 466 2.158460 AGTATGCTTCCCTATTTGGCCC 60.158 50.000 0.00 0.00 0.00 5.80
466 467 3.229697 AGTATGCTTCCCTATTTGGCC 57.770 47.619 0.00 0.00 0.00 5.36
467 468 5.828328 AGTAAAGTATGCTTCCCTATTTGGC 59.172 40.000 0.00 0.00 33.01 4.52
468 469 7.881775 AAGTAAAGTATGCTTCCCTATTTGG 57.118 36.000 0.00 0.00 33.01 3.28
469 470 9.178758 AGAAAGTAAAGTATGCTTCCCTATTTG 57.821 33.333 0.00 0.00 32.24 2.32
470 471 9.397280 GAGAAAGTAAAGTATGCTTCCCTATTT 57.603 33.333 0.00 0.00 32.24 1.40
471 472 8.773216 AGAGAAAGTAAAGTATGCTTCCCTATT 58.227 33.333 0.00 0.00 32.24 1.73
472 473 8.325477 AGAGAAAGTAAAGTATGCTTCCCTAT 57.675 34.615 0.00 0.00 32.24 2.57
473 474 7.620094 AGAGAGAAAGTAAAGTATGCTTCCCTA 59.380 37.037 0.00 0.00 32.24 3.53
474 475 6.442244 AGAGAGAAAGTAAAGTATGCTTCCCT 59.558 38.462 0.00 0.00 32.24 4.20
475 476 6.645306 AGAGAGAAAGTAAAGTATGCTTCCC 58.355 40.000 0.00 0.00 32.24 3.97
476 477 6.474102 CGAGAGAGAAAGTAAAGTATGCTTCC 59.526 42.308 0.00 0.00 32.24 3.46
477 478 6.474102 CCGAGAGAGAAAGTAAAGTATGCTTC 59.526 42.308 0.00 0.00 32.24 3.86
478 479 6.334202 CCGAGAGAGAAAGTAAAGTATGCTT 58.666 40.000 0.00 0.00 35.24 3.91
479 480 5.163499 CCCGAGAGAGAAAGTAAAGTATGCT 60.163 44.000 0.00 0.00 0.00 3.79
480 481 5.044558 CCCGAGAGAGAAAGTAAAGTATGC 58.955 45.833 0.00 0.00 0.00 3.14
481 482 6.452494 TCCCGAGAGAGAAAGTAAAGTATG 57.548 41.667 0.00 0.00 0.00 2.39
482 483 7.477945 TTTCCCGAGAGAGAAAGTAAAGTAT 57.522 36.000 0.00 0.00 0.00 2.12
483 484 6.906157 TTTCCCGAGAGAGAAAGTAAAGTA 57.094 37.500 0.00 0.00 0.00 2.24
484 485 5.803237 TTTCCCGAGAGAGAAAGTAAAGT 57.197 39.130 0.00 0.00 0.00 2.66
507 508 7.645340 GCTGTTCGTAATCATCATAGCATTTTT 59.355 33.333 0.00 0.00 0.00 1.94
508 509 7.134815 GCTGTTCGTAATCATCATAGCATTTT 58.865 34.615 0.00 0.00 0.00 1.82
509 510 6.260714 TGCTGTTCGTAATCATCATAGCATTT 59.739 34.615 0.00 0.00 34.14 2.32
510 511 5.759763 TGCTGTTCGTAATCATCATAGCATT 59.240 36.000 0.00 0.00 34.14 3.56
511 512 5.299949 TGCTGTTCGTAATCATCATAGCAT 58.700 37.500 0.00 0.00 34.14 3.79
512 513 4.692228 TGCTGTTCGTAATCATCATAGCA 58.308 39.130 0.00 0.00 36.42 3.49
513 514 5.235186 AGTTGCTGTTCGTAATCATCATAGC 59.765 40.000 0.00 0.00 0.00 2.97
514 515 6.074088 GGAGTTGCTGTTCGTAATCATCATAG 60.074 42.308 0.00 0.00 0.00 2.23
515 516 5.753438 GGAGTTGCTGTTCGTAATCATCATA 59.247 40.000 0.00 0.00 0.00 2.15
516 517 4.572389 GGAGTTGCTGTTCGTAATCATCAT 59.428 41.667 0.00 0.00 0.00 2.45
517 518 3.932710 GGAGTTGCTGTTCGTAATCATCA 59.067 43.478 0.00 0.00 0.00 3.07
518 519 3.309954 GGGAGTTGCTGTTCGTAATCATC 59.690 47.826 0.00 0.00 0.00 2.92
519 520 3.270877 GGGAGTTGCTGTTCGTAATCAT 58.729 45.455 0.00 0.00 0.00 2.45
520 521 2.695359 GGGAGTTGCTGTTCGTAATCA 58.305 47.619 0.00 0.00 0.00 2.57
521 522 1.659098 CGGGAGTTGCTGTTCGTAATC 59.341 52.381 0.00 0.00 0.00 1.75
522 523 1.274167 TCGGGAGTTGCTGTTCGTAAT 59.726 47.619 0.00 0.00 0.00 1.89
523 524 0.675083 TCGGGAGTTGCTGTTCGTAA 59.325 50.000 0.00 0.00 0.00 3.18
524 525 0.038892 GTCGGGAGTTGCTGTTCGTA 60.039 55.000 0.00 0.00 0.00 3.43
525 526 1.300697 GTCGGGAGTTGCTGTTCGT 60.301 57.895 0.00 0.00 0.00 3.85
526 527 2.027625 GGTCGGGAGTTGCTGTTCG 61.028 63.158 0.00 0.00 0.00 3.95
564 565 1.166531 GGGCGAGAGAGAGAGAGAGC 61.167 65.000 0.00 0.00 0.00 4.09
565 566 0.880278 CGGGCGAGAGAGAGAGAGAG 60.880 65.000 0.00 0.00 0.00 3.20
566 567 1.145156 CGGGCGAGAGAGAGAGAGA 59.855 63.158 0.00 0.00 0.00 3.10
568 569 1.701031 ATCCGGGCGAGAGAGAGAGA 61.701 60.000 0.00 0.00 0.00 3.10
570 571 0.820074 GAATCCGGGCGAGAGAGAGA 60.820 60.000 0.00 0.00 0.00 3.10
571 572 1.657556 GAATCCGGGCGAGAGAGAG 59.342 63.158 0.00 0.00 0.00 3.20
572 573 2.187493 CGAATCCGGGCGAGAGAGA 61.187 63.158 0.00 0.00 0.00 3.10
702 765 1.966451 GGGGATCAATTAGCGCCGG 60.966 63.158 2.29 0.00 36.80 6.13
717 780 1.350351 CCTATGCCAAGATGAGAGGGG 59.650 57.143 0.00 0.00 0.00 4.79
727 790 2.509964 AGGGTTCCTTACCTATGCCAAG 59.490 50.000 0.00 0.00 46.86 3.61
842 939 0.884704 AGGTAACACGCAGCAACCAG 60.885 55.000 0.00 0.00 41.41 4.00
861 958 5.129815 CCACACCTTATACTAAGCCCTACAA 59.870 44.000 0.00 0.00 0.00 2.41
909 1073 4.819630 TCAGTTCAGTTCAACCCATAACAC 59.180 41.667 0.00 0.00 0.00 3.32
915 1079 3.020984 GGTTTCAGTTCAGTTCAACCCA 58.979 45.455 0.00 0.00 0.00 4.51
941 1105 1.376424 AAGCACAGCGATGGTCAGG 60.376 57.895 5.32 0.00 0.00 3.86
952 1116 2.292267 ACCTGAAGTTCACAAGCACAG 58.708 47.619 0.08 0.00 0.00 3.66
954 1118 2.796032 GCAACCTGAAGTTCACAAGCAC 60.796 50.000 0.08 0.00 36.18 4.40
956 1120 1.269257 GGCAACCTGAAGTTCACAAGC 60.269 52.381 0.08 4.10 36.18 4.01
1003 1167 2.228343 GCACTTGCAGAAAGAGCTGAAT 59.772 45.455 3.34 0.00 45.77 2.57
1027 1191 0.249699 TCAACATTGCCGTCGTCTGT 60.250 50.000 0.00 0.00 0.00 3.41
1040 1204 4.449131 CCTCACAGCATCTGTATCAACAT 58.551 43.478 0.00 0.00 43.43 2.71
1062 1226 0.103937 CCAGAAGTGATCTCCTCGCC 59.896 60.000 0.00 0.00 35.73 5.54
1071 1235 4.036518 ACTCAGCCTTATCCAGAAGTGAT 58.963 43.478 0.00 0.00 0.00 3.06
1074 1238 2.428890 CGACTCAGCCTTATCCAGAAGT 59.571 50.000 0.00 0.00 0.00 3.01
1083 1247 1.847328 TGATCACCGACTCAGCCTTA 58.153 50.000 0.00 0.00 0.00 2.69
1159 1323 2.350293 CGAGCAGATGAATCGACGAGAT 60.350 50.000 3.01 0.00 42.43 2.75
1286 1450 2.783135 CTAAAACAGAGCCAGCCTTCA 58.217 47.619 0.00 0.00 0.00 3.02
1395 1559 7.351981 CAGCAAGCAAAACTAAAATAAAACCC 58.648 34.615 0.00 0.00 0.00 4.11
1569 1738 5.344743 TCGAAATTTAGTCCAGCAGATCT 57.655 39.130 0.00 0.00 0.00 2.75
1799 2033 5.393461 GCAGCAAGCAATTCCTGTTAATAGT 60.393 40.000 0.00 0.00 44.79 2.12
1800 2034 5.039333 GCAGCAAGCAATTCCTGTTAATAG 58.961 41.667 0.00 0.00 44.79 1.73
1873 2107 6.402222 AGAGTAAAAGACAGGCAGAACATAG 58.598 40.000 0.00 0.00 0.00 2.23
1897 2131 9.303116 TCCAGCACAAAAAGGTAAATAGATTTA 57.697 29.630 0.00 0.00 0.00 1.40
2012 2251 9.574516 AAAATTCTGTTCTACTCCTAACATGTT 57.425 29.630 16.68 16.68 35.21 2.71
2013 2252 9.003658 CAAAATTCTGTTCTACTCCTAACATGT 57.996 33.333 0.00 0.00 35.21 3.21
2014 2253 9.003658 ACAAAATTCTGTTCTACTCCTAACATG 57.996 33.333 0.00 0.00 35.21 3.21
2015 2254 9.574516 AACAAAATTCTGTTCTACTCCTAACAT 57.425 29.630 0.00 0.00 34.37 2.71
2016 2255 8.974060 AACAAAATTCTGTTCTACTCCTAACA 57.026 30.769 0.00 0.00 34.37 2.41
2038 2277 6.539826 CACATATAAGAAGTGGCATCAGAACA 59.460 38.462 0.00 0.00 0.00 3.18
2135 2374 0.890542 CCAGTAGCAGCAAAGTGGCA 60.891 55.000 8.33 0.00 35.83 4.92
2559 2798 9.088987 TGAGCTTCCCTAATGTTTTTAAGAAAT 57.911 29.630 0.00 0.00 0.00 2.17
2762 3001 0.616111 ACAAGCTCGTCCATCCTCCT 60.616 55.000 0.00 0.00 0.00 3.69
3009 3248 7.009999 CAGTATCTGAAGTATGTGAAACTGAGC 59.990 40.741 0.00 0.00 32.87 4.26
3468 3709 3.893720 GCATGTATAAACAGCTCCATGC 58.106 45.455 6.66 6.66 45.49 4.06
3495 3736 2.181125 AGATTGCACATGCCATTTGGA 58.819 42.857 0.00 0.00 41.18 3.53
3557 3798 8.768397 TCAATATTGGTACTCAACAAGTAGGAT 58.232 33.333 15.36 0.00 41.17 3.24
3720 3964 1.476891 ACGATGCTGGAACTACGTGAT 59.523 47.619 0.00 0.00 32.93 3.06
3721 3965 0.885879 ACGATGCTGGAACTACGTGA 59.114 50.000 0.00 0.00 32.93 4.35
3738 3982 5.188194 GCAGCGTCATATGTTAGTAAAACG 58.812 41.667 1.90 3.91 0.00 3.60
3747 3991 0.541392 TGAGGGCAGCGTCATATGTT 59.459 50.000 1.90 0.00 0.00 2.71
3748 3992 0.179073 GTGAGGGCAGCGTCATATGT 60.179 55.000 1.90 0.00 0.00 2.29
3760 4004 3.733443 AAAAGTGACAAATGTGAGGGC 57.267 42.857 0.00 0.00 0.00 5.19
3840 4089 0.039618 TCCAGGAGACATTTTGGGCC 59.960 55.000 0.00 0.00 0.00 5.80
3842 4091 2.887151 ACTCCAGGAGACATTTTGGG 57.113 50.000 24.45 0.00 33.32 4.12
3903 4152 6.422776 AAACTACAGCTATTTTCCATGTCG 57.577 37.500 0.00 0.00 0.00 4.35
3958 4207 7.220300 CACGGTCAACACTAAGATCTGTAATAC 59.780 40.741 0.00 0.00 0.00 1.89
3982 4234 7.683945 GCAGATTAGTTTCTACTACTACCCCAC 60.684 44.444 0.00 0.00 36.61 4.61
3983 4235 6.323225 GCAGATTAGTTTCTACTACTACCCCA 59.677 42.308 0.00 0.00 36.61 4.96
3993 4245 7.116519 ACGAAAGAACTGCAGATTAGTTTCTAC 59.883 37.037 23.35 13.25 38.42 2.59
3994 4246 7.152645 ACGAAAGAACTGCAGATTAGTTTCTA 58.847 34.615 23.35 0.00 38.42 2.10
3995 4247 5.992217 ACGAAAGAACTGCAGATTAGTTTCT 59.008 36.000 23.35 14.70 38.42 2.52
3996 4248 6.229561 ACGAAAGAACTGCAGATTAGTTTC 57.770 37.500 23.35 18.06 38.42 2.78
4016 4268 1.669049 ATCGCCGGGTCATGTTACGA 61.669 55.000 2.18 0.00 0.00 3.43
4022 4274 0.875908 CAGTGTATCGCCGGGTCATG 60.876 60.000 2.18 0.00 0.00 3.07
4089 4341 3.914094 GCTGGTGCTCATGATGCA 58.086 55.556 13.62 13.62 38.19 3.96
4182 4436 9.574516 GGAGTATATATTTTCCATTGTGAAGGT 57.425 33.333 9.27 0.00 0.00 3.50
4205 4459 5.749462 ACAAGTATTTTCAGATGGAGGGAG 58.251 41.667 0.00 0.00 0.00 4.30
4206 4460 5.250543 TGACAAGTATTTTCAGATGGAGGGA 59.749 40.000 0.00 0.00 0.00 4.20
4207 4461 5.500234 TGACAAGTATTTTCAGATGGAGGG 58.500 41.667 0.00 0.00 0.00 4.30
4208 4462 6.825213 TGATGACAAGTATTTTCAGATGGAGG 59.175 38.462 0.00 0.00 0.00 4.30
4209 4463 7.854557 TGATGACAAGTATTTTCAGATGGAG 57.145 36.000 0.00 0.00 0.00 3.86
4210 4464 8.634335 TTTGATGACAAGTATTTTCAGATGGA 57.366 30.769 0.00 0.00 37.32 3.41
4211 4465 9.865321 ATTTTGATGACAAGTATTTTCAGATGG 57.135 29.630 0.00 0.00 37.32 3.51
4213 4467 9.865321 CCATTTTGATGACAAGTATTTTCAGAT 57.135 29.630 0.00 0.00 37.32 2.90
4214 4468 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
4215 4469 9.865321 ATCCATTTTGATGACAAGTATTTTCAG 57.135 29.630 0.00 0.00 37.32 3.02
4223 4477 9.480053 CACTTTTTATCCATTTTGATGACAAGT 57.520 29.630 0.00 0.00 33.86 3.16
4224 4478 9.695526 TCACTTTTTATCCATTTTGATGACAAG 57.304 29.630 0.00 0.00 37.32 3.16
4226 4480 9.642327 CATCACTTTTTATCCATTTTGATGACA 57.358 29.630 0.00 0.00 40.95 3.58
4227 4481 9.643693 ACATCACTTTTTATCCATTTTGATGAC 57.356 29.630 13.63 0.00 40.95 3.06
4292 4546 8.871125 GGAGGGAGTACTTATCATCAAAATAGA 58.129 37.037 0.00 0.00 0.00 1.98
4293 4547 7.815068 CGGAGGGAGTACTTATCATCAAAATAG 59.185 40.741 0.00 0.00 0.00 1.73
4294 4548 7.289317 ACGGAGGGAGTACTTATCATCAAAATA 59.711 37.037 0.00 0.00 0.00 1.40
4295 4549 6.099845 ACGGAGGGAGTACTTATCATCAAAAT 59.900 38.462 0.00 0.00 0.00 1.82
4296 4550 5.424252 ACGGAGGGAGTACTTATCATCAAAA 59.576 40.000 0.00 0.00 0.00 2.44
4297 4551 4.960469 ACGGAGGGAGTACTTATCATCAAA 59.040 41.667 0.00 0.00 0.00 2.69
4298 4552 4.543689 ACGGAGGGAGTACTTATCATCAA 58.456 43.478 0.00 0.00 0.00 2.57
4299 4553 4.180377 ACGGAGGGAGTACTTATCATCA 57.820 45.455 0.00 0.00 0.00 3.07
4300 4554 4.022155 GGAACGGAGGGAGTACTTATCATC 60.022 50.000 0.00 0.00 0.00 2.92
4301 4555 3.896272 GGAACGGAGGGAGTACTTATCAT 59.104 47.826 0.00 0.00 0.00 2.45
4302 4556 3.053095 AGGAACGGAGGGAGTACTTATCA 60.053 47.826 0.00 0.00 0.00 2.15
4303 4557 3.564264 AGGAACGGAGGGAGTACTTATC 58.436 50.000 0.00 0.00 0.00 1.75
4304 4558 3.684408 AGGAACGGAGGGAGTACTTAT 57.316 47.619 0.00 0.00 0.00 1.73
4305 4559 4.591321 TTAGGAACGGAGGGAGTACTTA 57.409 45.455 0.00 0.00 0.00 2.24
4306 4560 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
4307 4561 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4308 4562 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4309 4563 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4310 4564 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4311 4565 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4312 4566 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4313 4567 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4314 4568 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4315 4569 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4316 4570 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4317 4571 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4334 4588 6.531503 AGTCATCGGAAATGTCTAGAAAGA 57.468 37.500 0.00 0.00 0.00 2.52
4335 4589 7.484975 AGTAGTCATCGGAAATGTCTAGAAAG 58.515 38.462 0.00 0.00 0.00 2.62
4336 4590 7.406031 AGTAGTCATCGGAAATGTCTAGAAA 57.594 36.000 0.00 0.00 0.00 2.52
4337 4591 7.555195 TGTAGTAGTCATCGGAAATGTCTAGAA 59.445 37.037 0.00 0.00 0.00 2.10
4338 4592 7.052248 TGTAGTAGTCATCGGAAATGTCTAGA 58.948 38.462 0.00 0.00 0.00 2.43
4339 4593 7.260558 TGTAGTAGTCATCGGAAATGTCTAG 57.739 40.000 0.00 0.00 0.00 2.43
4340 4594 7.818997 ATGTAGTAGTCATCGGAAATGTCTA 57.181 36.000 0.00 0.00 0.00 2.59
4341 4595 6.716934 ATGTAGTAGTCATCGGAAATGTCT 57.283 37.500 0.00 0.00 0.00 3.41
4342 4596 6.577800 CGTATGTAGTAGTCATCGGAAATGTC 59.422 42.308 0.00 0.00 0.00 3.06
4343 4597 6.436261 CGTATGTAGTAGTCATCGGAAATGT 58.564 40.000 0.00 0.00 0.00 2.71
4344 4598 5.856986 CCGTATGTAGTAGTCATCGGAAATG 59.143 44.000 0.00 0.00 37.75 2.32
4345 4599 5.766670 TCCGTATGTAGTAGTCATCGGAAAT 59.233 40.000 0.00 0.00 39.45 2.17
4346 4600 5.125356 TCCGTATGTAGTAGTCATCGGAAA 58.875 41.667 0.00 0.00 39.45 3.13
4347 4601 4.707105 TCCGTATGTAGTAGTCATCGGAA 58.293 43.478 0.00 0.00 39.45 4.30
4348 4602 4.341366 TCCGTATGTAGTAGTCATCGGA 57.659 45.455 0.00 0.00 39.74 4.55
4349 4603 4.454847 ACATCCGTATGTAGTAGTCATCGG 59.545 45.833 0.00 0.00 44.66 4.18
4350 4604 5.608676 ACATCCGTATGTAGTAGTCATCG 57.391 43.478 0.00 0.00 44.66 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.