Multiple sequence alignment - TraesCS3B01G430300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G430300 chr3B 100.000 4368 0 0 1 4368 669710018 669714385 0.000000e+00 8067
1 TraesCS3B01G430300 chr3B 85.804 479 61 6 1179 1654 262230889 262230415 6.520000e-138 501
2 TraesCS3B01G430300 chr3B 95.628 183 8 0 3816 3998 117922378 117922560 1.190000e-75 294
3 TraesCS3B01G430300 chr3B 93.966 116 7 0 3997 4112 534258273 534258158 4.490000e-40 176
4 TraesCS3B01G430300 chr3B 95.413 109 5 0 3997 4105 570934225 570934333 1.610000e-39 174
5 TraesCS3B01G430300 chr3A 89.038 2682 205 59 101 2740 645541953 645544587 0.000000e+00 3241
6 TraesCS3B01G430300 chr3A 92.692 1081 56 10 2743 3817 645545148 645546211 0.000000e+00 1537
7 TraesCS3B01G430300 chr3A 86.765 272 22 6 4103 4368 645546212 645546475 1.540000e-74 291
8 TraesCS3B01G430300 chr3A 91.848 184 15 0 3815 3998 135972569 135972386 1.560000e-64 257
9 TraesCS3B01G430300 chr3A 94.595 111 6 0 3997 4107 55506826 55506936 5.810000e-39 172
10 TraesCS3B01G430300 chr3D 92.843 2026 102 25 729 2740 507486182 507488178 0.000000e+00 2898
11 TraesCS3B01G430300 chr3D 91.648 910 56 9 2743 3646 507488367 507489262 0.000000e+00 1242
12 TraesCS3B01G430300 chr3D 83.280 622 77 18 3 610 507485312 507485920 8.260000e-152 547
13 TraesCS3B01G430300 chr3D 90.943 265 13 5 4107 4368 507489550 507489806 3.230000e-91 346
14 TraesCS3B01G430300 chr3D 91.848 184 15 0 3815 3998 554149784 554149967 1.560000e-64 257
15 TraesCS3B01G430300 chr3D 95.139 144 7 0 3671 3814 507489396 507489539 1.220000e-55 228
16 TraesCS3B01G430300 chr3D 85.446 213 27 3 1669 1878 507766350 507766561 7.360000e-53 219
17 TraesCS3B01G430300 chr3D 93.671 79 1 2 2114 2192 507768512 507768586 9.930000e-22 115
18 TraesCS3B01G430300 chrUn 88.084 663 72 7 970 1628 361569710 361569051 0.000000e+00 780
19 TraesCS3B01G430300 chr7A 83.275 855 114 16 1885 2728 642740184 642739348 0.000000e+00 760
20 TraesCS3B01G430300 chr1A 88.406 483 51 5 1176 1654 206112018 206112499 1.050000e-160 577
21 TraesCS3B01G430300 chr1A 96.045 177 7 0 3835 4011 582764912 582765088 5.530000e-74 289
22 TraesCS3B01G430300 chr1A 93.443 183 12 0 3816 3998 243163740 243163922 5.570000e-69 272
23 TraesCS3B01G430300 chr4A 88.174 482 53 4 1176 1654 653268057 653267577 4.900000e-159 571
24 TraesCS3B01G430300 chr4A 87.759 482 55 4 1176 1654 409227568 409228048 1.060000e-155 560
25 TraesCS3B01G430300 chr4A 88.222 450 47 5 1176 1621 555995237 555995684 2.310000e-147 532
26 TraesCS3B01G430300 chr4A 99.390 164 1 0 3835 3998 621704668 621704831 9.180000e-77 298
27 TraesCS3B01G430300 chr4A 96.532 173 4 2 3832 4003 464567602 464567431 7.150000e-73 285
28 TraesCS3B01G430300 chr6B 87.734 481 46 10 1176 1654 708774616 708775085 2.300000e-152 549
29 TraesCS3B01G430300 chr6B 84.932 292 39 5 3816 4105 280297500 280297212 1.540000e-74 291
30 TraesCS3B01G430300 chr6B 90.323 186 16 2 3814 3998 160917033 160917217 4.360000e-60 243
31 TraesCS3B01G430300 chr6B 83.929 168 25 2 3938 4104 687041611 687041445 4.520000e-35 159
32 TraesCS3B01G430300 chr2D 80.676 740 92 19 1985 2719 16268081 16267388 1.080000e-145 527
33 TraesCS3B01G430300 chr2D 94.643 112 6 0 3997 4108 484901240 484901129 1.610000e-39 174
34 TraesCS3B01G430300 chr7D 82.787 488 75 4 2260 2740 578158453 578158938 1.120000e-115 427
35 TraesCS3B01G430300 chr7D 90.710 183 17 0 3816 3998 265173300 265173482 1.210000e-60 244
36 TraesCS3B01G430300 chr5B 83.607 427 44 11 2236 2656 338479111 338479517 1.150000e-100 377
37 TraesCS3B01G430300 chr5A 99.394 165 1 0 3834 3998 452933406 452933242 2.550000e-77 300
38 TraesCS3B01G430300 chr5A 86.026 229 27 5 2515 2740 610215961 610216187 1.570000e-59 241
39 TraesCS3B01G430300 chr2A 94.595 185 8 2 3831 4013 61476166 61475982 7.150000e-73 285
40 TraesCS3B01G430300 chr2A 94.536 183 10 0 3816 3998 729289097 729288915 2.570000e-72 283
41 TraesCS3B01G430300 chr6A 94.944 178 9 0 3834 4011 78517540 78517717 3.330000e-71 279
42 TraesCS3B01G430300 chr4D 90.761 184 16 1 3816 3998 238640348 238640165 1.210000e-60 244
43 TraesCS3B01G430300 chr7B 94.643 112 6 0 3997 4108 73567177 73567066 1.610000e-39 174
44 TraesCS3B01G430300 chr7B 85.135 148 20 2 3958 4104 560248585 560248731 2.720000e-32 150
45 TraesCS3B01G430300 chr1B 93.043 115 8 0 3997 4111 345304255 345304141 7.510000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G430300 chr3B 669710018 669714385 4367 False 8067.000000 8067 100.000000 1 4368 1 chr3B.!!$F3 4367
1 TraesCS3B01G430300 chr3A 645541953 645546475 4522 False 1689.666667 3241 89.498333 101 4368 3 chr3A.!!$F2 4267
2 TraesCS3B01G430300 chr3D 507485312 507489806 4494 False 1052.200000 2898 90.770600 3 4368 5 chr3D.!!$F2 4365
3 TraesCS3B01G430300 chrUn 361569051 361569710 659 True 780.000000 780 88.084000 970 1628 1 chrUn.!!$R1 658
4 TraesCS3B01G430300 chr7A 642739348 642740184 836 True 760.000000 760 83.275000 1885 2728 1 chr7A.!!$R1 843
5 TraesCS3B01G430300 chr2D 16267388 16268081 693 True 527.000000 527 80.676000 1985 2719 1 chr2D.!!$R1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 233 0.037326 TTCTTCTTCGACGCCTGCAT 60.037 50.0 0.00 0.0 0.00 3.96 F
345 350 0.039527 GCAACCATTTGTGTCGTCCC 60.040 55.0 0.00 0.0 34.90 4.46 F
373 378 0.179000 CTCGTAGCTTTGGGCCTCAT 59.821 55.0 4.53 0.0 43.05 2.90 F
1752 1987 0.397941 TGAAGCCCACTCTGGACAAG 59.602 55.0 0.00 0.0 40.96 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1923 0.318699 TCAACGAAGACACGGCAGAG 60.319 55.0 0.00 0.00 37.61 3.35 R
1752 1987 0.395448 AGTAGAGGGACGGCCAGTAC 60.395 60.0 11.00 7.29 35.15 2.73 R
2127 2363 2.159421 GCATGTTCCATGCTTCTCTGTG 60.159 50.0 19.18 0.00 41.52 3.66 R
3740 4695 0.389817 TCAAGAATGTCTCGGTGGCG 60.390 55.0 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.584327 AGTGTCACTTGTTTTTATGCCC 57.416 40.909 0.00 0.00 0.00 5.36
59 60 0.388006 GTTTTTATGCCCGCGTGCTT 60.388 50.000 16.01 11.38 0.00 3.91
60 61 0.315568 TTTTTATGCCCGCGTGCTTT 59.684 45.000 16.01 4.96 0.00 3.51
61 62 0.315568 TTTTATGCCCGCGTGCTTTT 59.684 45.000 16.01 2.29 0.00 2.27
62 63 0.315568 TTTATGCCCGCGTGCTTTTT 59.684 45.000 16.01 0.00 0.00 1.94
64 65 1.928706 TATGCCCGCGTGCTTTTTCC 61.929 55.000 16.01 0.00 0.00 3.13
66 67 2.983592 CCCGCGTGCTTTTTCCCT 60.984 61.111 4.92 0.00 0.00 4.20
68 69 2.173382 CGCGTGCTTTTTCCCTCG 59.827 61.111 0.00 0.00 0.00 4.63
70 71 1.206831 GCGTGCTTTTTCCCTCGTC 59.793 57.895 0.00 0.00 0.00 4.20
71 72 1.866925 CGTGCTTTTTCCCTCGTCC 59.133 57.895 0.00 0.00 0.00 4.79
82 83 1.639628 TCCCTCGTCCTCTTCCTACTT 59.360 52.381 0.00 0.00 0.00 2.24
83 84 1.751924 CCCTCGTCCTCTTCCTACTTG 59.248 57.143 0.00 0.00 0.00 3.16
85 86 1.751924 CTCGTCCTCTTCCTACTTGGG 59.248 57.143 0.00 0.00 36.20 4.12
86 87 1.076677 TCGTCCTCTTCCTACTTGGGT 59.923 52.381 0.00 0.00 36.20 4.51
177 181 4.334118 TGCACCACATCGCTGCCT 62.334 61.111 0.00 0.00 0.00 4.75
193 197 3.873801 GCTGCCTGACCATCCTTCTTTTA 60.874 47.826 0.00 0.00 0.00 1.52
194 198 4.530875 CTGCCTGACCATCCTTCTTTTAT 58.469 43.478 0.00 0.00 0.00 1.40
225 229 1.535833 TCTCTTCTTCTTCGACGCCT 58.464 50.000 0.00 0.00 0.00 5.52
229 233 0.037326 TTCTTCTTCGACGCCTGCAT 60.037 50.000 0.00 0.00 0.00 3.96
238 242 4.720902 CGCCTGCATCCCACCACA 62.721 66.667 0.00 0.00 0.00 4.17
244 248 1.228245 GCATCCCACCACACACACT 60.228 57.895 0.00 0.00 0.00 3.55
258 262 1.217882 CACACTGAACCGTCAAGTCC 58.782 55.000 0.00 0.00 31.88 3.85
281 285 1.648467 GCTTTCTCCCGCAAGCGATT 61.648 55.000 16.97 0.00 42.83 3.34
289 293 2.746277 GCAAGCGATTCCACGGGT 60.746 61.111 0.00 0.00 0.00 5.28
330 335 2.737376 GGTCGAGGACACCGCAAC 60.737 66.667 0.00 0.00 33.68 4.17
334 339 1.671054 CGAGGACACCGCAACCATT 60.671 57.895 0.00 0.00 0.00 3.16
345 350 0.039527 GCAACCATTTGTGTCGTCCC 60.040 55.000 0.00 0.00 34.90 4.46
367 372 0.179134 CTCCGTCTCGTAGCTTTGGG 60.179 60.000 0.00 0.00 0.00 4.12
373 378 0.179000 CTCGTAGCTTTGGGCCTCAT 59.821 55.000 4.53 0.00 43.05 2.90
378 383 2.845363 AGCTTTGGGCCTCATTTTTG 57.155 45.000 4.53 0.00 43.05 2.44
405 410 2.151202 ACAAAATCGACTTGCACCGAT 58.849 42.857 10.82 10.82 46.08 4.18
415 422 3.964909 ACTTGCACCGATTCTTTTTCAC 58.035 40.909 0.00 0.00 0.00 3.18
423 430 4.334481 ACCGATTCTTTTTCACGTGACTTT 59.666 37.500 19.90 0.00 0.00 2.66
428 435 8.270799 CGATTCTTTTTCACGTGACTTTAGTTA 58.729 33.333 19.90 0.00 0.00 2.24
527 536 8.673626 AAATAAACAGAATAACATGCACTTCG 57.326 30.769 0.00 0.00 0.00 3.79
573 586 8.756927 TCAAAATATATCTGTTTTTGCATGGGA 58.243 29.630 0.00 0.00 39.20 4.37
592 605 8.370182 GCATGGGAATTTCAAAATATATCCACT 58.630 33.333 0.00 0.00 28.71 4.00
612 625 3.574826 ACTAGACCGAGCCTATCAATTCC 59.425 47.826 0.00 0.00 0.00 3.01
613 626 1.341531 AGACCGAGCCTATCAATTCCG 59.658 52.381 0.00 0.00 0.00 4.30
617 630 2.329379 CGAGCCTATCAATTCCGTAGC 58.671 52.381 0.00 0.00 0.00 3.58
622 635 5.925509 AGCCTATCAATTCCGTAGCTTAAA 58.074 37.500 0.00 0.00 0.00 1.52
623 636 6.354130 AGCCTATCAATTCCGTAGCTTAAAA 58.646 36.000 0.00 0.00 0.00 1.52
630 643 4.957759 TTCCGTAGCTTAAAATGCTTCC 57.042 40.909 0.00 0.00 41.46 3.46
635 839 2.369394 AGCTTAAAATGCTTCCCTCCG 58.631 47.619 0.00 0.00 37.52 4.63
637 841 3.054655 AGCTTAAAATGCTTCCCTCCGTA 60.055 43.478 0.00 0.00 37.52 4.02
640 844 5.336134 GCTTAAAATGCTTCCCTCCGTAAAA 60.336 40.000 0.00 0.00 0.00 1.52
675 879 7.553334 AGCCGTTTAGATCATTAAAGTAGTGA 58.447 34.615 0.00 0.00 0.00 3.41
676 880 7.491696 AGCCGTTTAGATCATTAAAGTAGTGAC 59.508 37.037 0.00 0.00 0.00 3.67
678 882 8.592998 CCGTTTAGATCATTAAAGTAGTGACAC 58.407 37.037 0.00 0.00 0.00 3.67
679 883 9.355215 CGTTTAGATCATTAAAGTAGTGACACT 57.645 33.333 13.68 13.68 0.00 3.55
711 918 2.526888 TGTAGAGGGAGTCGATGGTT 57.473 50.000 0.00 0.00 0.00 3.67
713 920 2.496070 TGTAGAGGGAGTCGATGGTTTG 59.504 50.000 0.00 0.00 0.00 2.93
714 921 1.645710 AGAGGGAGTCGATGGTTTGT 58.354 50.000 0.00 0.00 0.00 2.83
717 924 2.742589 GAGGGAGTCGATGGTTTGTTTC 59.257 50.000 0.00 0.00 0.00 2.78
748 955 1.381928 CGGCAGAGCTACCGGTAGAA 61.382 60.000 39.65 10.85 45.74 2.10
867 1076 0.617820 AGGTCATCCCTAACCGCACT 60.618 55.000 0.00 0.00 43.87 4.40
883 1092 3.252458 CCGCACTATTATTAAAGCACCCC 59.748 47.826 0.00 0.00 0.00 4.95
907 1116 3.317150 TGCGTCTTGATTGTACTCTGTG 58.683 45.455 0.00 0.00 0.00 3.66
1237 1457 1.006758 TCCGCCTCCTCTTTTCCTCTA 59.993 52.381 0.00 0.00 0.00 2.43
1463 1686 4.918810 AATTTTGTGCTTTCTCGGTTCT 57.081 36.364 0.00 0.00 0.00 3.01
1474 1697 2.439409 TCTCGGTTCTTGGTCGATGTA 58.561 47.619 0.00 0.00 32.32 2.29
1475 1698 2.422479 TCTCGGTTCTTGGTCGATGTAG 59.578 50.000 0.00 0.00 32.32 2.74
1477 1700 2.821378 TCGGTTCTTGGTCGATGTAGAA 59.179 45.455 0.00 0.00 0.00 2.10
1479 1702 4.081862 TCGGTTCTTGGTCGATGTAGAATT 60.082 41.667 8.62 0.00 0.00 2.17
1512 1736 1.672881 GTTGGATTTCCGCTGATGGAG 59.327 52.381 0.00 0.00 39.72 3.86
1594 1819 0.605319 TTCGACATGGACAAGGTGCC 60.605 55.000 0.00 0.00 0.00 5.01
1629 1860 0.750546 ACTGATACGTGGCCGCTCTA 60.751 55.000 15.69 3.81 37.70 2.43
1639 1870 1.069204 TGGCCGCTCTAGCTTCATTAG 59.931 52.381 0.00 0.00 39.32 1.73
1692 1923 1.026182 TGACCTCGTTGATGCATGGC 61.026 55.000 2.46 0.00 0.00 4.40
1707 1938 2.811317 GGCTCTGCCGTGTCTTCG 60.811 66.667 0.00 0.00 39.62 3.79
1715 1950 1.944024 TGCCGTGTCTTCGTTGATTTT 59.056 42.857 0.00 0.00 0.00 1.82
1723 1958 5.235616 GTGTCTTCGTTGATTTTGGTGTAGA 59.764 40.000 0.00 0.00 0.00 2.59
1752 1987 0.397941 TGAAGCCCACTCTGGACAAG 59.602 55.000 0.00 0.00 40.96 3.16
1856 2091 5.178438 GTCAGAACTGTTGGATTGAACTCTC 59.822 44.000 0.00 0.00 0.00 3.20
1858 2093 5.178996 CAGAACTGTTGGATTGAACTCTCAG 59.821 44.000 0.00 0.00 31.69 3.35
1860 2095 5.296151 ACTGTTGGATTGAACTCTCAGAA 57.704 39.130 0.00 0.00 31.69 3.02
1864 2099 7.009179 TGTTGGATTGAACTCTCAGAATACT 57.991 36.000 0.00 0.00 31.69 2.12
1865 2100 7.099764 TGTTGGATTGAACTCTCAGAATACTC 58.900 38.462 0.00 0.00 31.69 2.59
1866 2101 6.227298 TGGATTGAACTCTCAGAATACTCC 57.773 41.667 0.00 0.00 31.69 3.85
1867 2102 5.960811 TGGATTGAACTCTCAGAATACTCCT 59.039 40.000 0.00 0.00 31.69 3.69
1868 2103 6.097554 TGGATTGAACTCTCAGAATACTCCTC 59.902 42.308 0.00 0.00 31.69 3.71
1869 2104 5.568685 TTGAACTCTCAGAATACTCCTCG 57.431 43.478 0.00 0.00 31.69 4.63
1870 2105 4.844884 TGAACTCTCAGAATACTCCTCGA 58.155 43.478 0.00 0.00 0.00 4.04
1871 2106 5.441500 TGAACTCTCAGAATACTCCTCGAT 58.558 41.667 0.00 0.00 0.00 3.59
1872 2107 5.888724 TGAACTCTCAGAATACTCCTCGATT 59.111 40.000 0.00 0.00 0.00 3.34
1873 2108 5.766150 ACTCTCAGAATACTCCTCGATTG 57.234 43.478 0.00 0.00 0.00 2.67
1874 2109 4.582656 ACTCTCAGAATACTCCTCGATTGG 59.417 45.833 0.00 0.00 0.00 3.16
1875 2110 4.537751 TCTCAGAATACTCCTCGATTGGT 58.462 43.478 0.00 0.00 0.00 3.67
1876 2111 5.691896 TCTCAGAATACTCCTCGATTGGTA 58.308 41.667 0.00 0.00 0.00 3.25
1939 2175 5.868801 CCTTACCTGTTGTTTTGCATAATGG 59.131 40.000 0.00 0.00 0.00 3.16
1977 2213 3.392882 TCGATCGGTCATTCATGGATTG 58.607 45.455 16.41 0.00 0.00 2.67
1980 2216 2.291365 TCGGTCATTCATGGATTGCTG 58.709 47.619 0.00 0.00 0.00 4.41
2086 2322 5.981088 TCCATATGAGCACAAACATTGTT 57.019 34.783 3.65 0.00 43.23 2.83
2107 2343 7.288810 TGTTTCATTTCCATTGCTAAGTCTT 57.711 32.000 0.00 0.00 0.00 3.01
2245 2481 3.455910 AGTAAGCATCTGGCCATTGACTA 59.544 43.478 17.64 6.61 46.50 2.59
2371 2610 8.531530 CCAGATGAAGAAAACAAACTTAAAACG 58.468 33.333 0.00 0.00 0.00 3.60
2604 2852 3.904339 AGGGCTCAGTTGAAGAACTAAGA 59.096 43.478 0.00 0.00 40.68 2.10
2659 2907 3.202151 TCTTTTGTCCTTGGACAGGTCTT 59.798 43.478 20.03 0.00 44.37 3.01
2668 2916 1.343465 TGGACAGGTCTTCTCGGTTTC 59.657 52.381 0.00 0.00 0.00 2.78
2680 2928 8.517056 GGTCTTCTCGGTTTCCATTTTTATTTA 58.483 33.333 0.00 0.00 0.00 1.40
2730 2982 2.016318 TGTTGCCACAACAGTTCTGAG 58.984 47.619 8.99 1.83 0.00 3.35
2740 2992 3.674528 ACAGTTCTGAGTGATGTCCAG 57.325 47.619 6.83 0.00 0.00 3.86
2766 3604 9.284594 GCATACGATCAACTATCTCTCTAAATC 57.715 37.037 0.00 0.00 31.87 2.17
2823 3662 4.398988 TGAATGGAATGGCATAACTGTGTC 59.601 41.667 0.00 0.00 0.00 3.67
2824 3663 3.719268 TGGAATGGCATAACTGTGTCT 57.281 42.857 0.00 0.00 0.00 3.41
2825 3664 3.346315 TGGAATGGCATAACTGTGTCTG 58.654 45.455 0.00 0.00 0.00 3.51
2904 3744 3.618690 ATTAGAACTCGAGGCTGCTTT 57.381 42.857 18.41 0.00 0.00 3.51
2942 3782 0.036306 CAGGCGTTGGTTAGGTTCCT 59.964 55.000 0.00 0.00 0.00 3.36
3004 3844 5.957842 CAAAGTTGGATTACCTGCAAGTA 57.042 39.130 0.00 0.00 37.82 2.24
3009 3849 7.539034 AGTTGGATTACCTGCAAGTATTTTT 57.461 32.000 0.00 0.00 37.11 1.94
3010 3850 7.378181 AGTTGGATTACCTGCAAGTATTTTTG 58.622 34.615 0.00 0.00 37.11 2.44
3011 3851 6.279513 TGGATTACCTGCAAGTATTTTTGG 57.720 37.500 0.00 0.00 37.04 3.28
3022 3862 6.485984 TGCAAGTATTTTTGGTCAAAATGCAT 59.514 30.769 20.78 11.21 45.29 3.96
3033 3873 7.649533 TGGTCAAAATGCATATCTCTTCATT 57.350 32.000 0.00 0.00 0.00 2.57
3045 3885 7.360438 GCATATCTCTTCATTATTCCCACGTTC 60.360 40.741 0.00 0.00 0.00 3.95
3061 3901 3.185188 CACGTTCTCCACTTCAGTCATTG 59.815 47.826 0.00 0.00 0.00 2.82
3064 3904 4.988540 CGTTCTCCACTTCAGTCATTGTTA 59.011 41.667 0.00 0.00 0.00 2.41
3164 4004 2.164219 TCGAAATCAAAGCATTGCCCTC 59.836 45.455 4.70 0.00 36.45 4.30
3165 4005 2.533266 GAAATCAAAGCATTGCCCTCG 58.467 47.619 4.70 0.00 36.45 4.63
3204 4044 5.407407 ACATATGATCCCATCGGTAAGTC 57.593 43.478 10.38 0.00 34.31 3.01
3233 4073 9.755122 AATCCCTTATACAGAAGCTTTTAAGTT 57.245 29.630 0.00 0.00 0.00 2.66
3234 4074 9.755122 ATCCCTTATACAGAAGCTTTTAAGTTT 57.245 29.630 0.00 0.00 31.84 2.66
3288 4129 6.239396 CCCATGCTAATCTTGATCTCTGAAT 58.761 40.000 0.00 0.00 0.00 2.57
3433 4274 0.761187 TCTGACTGCTTGCAAGACCT 59.239 50.000 30.39 10.18 0.00 3.85
3478 4320 2.572104 AGATCCTGCTAAAACGGGTCTT 59.428 45.455 0.00 0.00 37.37 3.01
3580 4422 5.426689 AACTGCTGGATATCAAACTCAGA 57.573 39.130 4.83 0.00 0.00 3.27
3666 4512 4.060205 GTGGCCTGTCTAAACGTTTCTAA 58.940 43.478 18.42 0.00 0.00 2.10
3667 4513 4.694037 GTGGCCTGTCTAAACGTTTCTAAT 59.306 41.667 18.42 0.00 0.00 1.73
3668 4514 5.870978 GTGGCCTGTCTAAACGTTTCTAATA 59.129 40.000 18.42 0.00 0.00 0.98
3740 4695 5.583495 AGACGTACTAGCAGTTGATTGATC 58.417 41.667 0.00 0.00 0.00 2.92
3742 4697 3.180584 CGTACTAGCAGTTGATTGATCGC 59.819 47.826 0.00 0.00 0.00 4.58
3790 4745 4.901197 TGAGTTCAGGTGCCAAATAGTA 57.099 40.909 0.00 0.00 0.00 1.82
3793 4748 6.953101 TGAGTTCAGGTGCCAAATAGTAATA 58.047 36.000 0.00 0.00 0.00 0.98
3824 4779 2.611225 CATTCACTGCTACTCCCTCC 57.389 55.000 0.00 0.00 0.00 4.30
3825 4780 1.115467 ATTCACTGCTACTCCCTCCG 58.885 55.000 0.00 0.00 0.00 4.63
3826 4781 0.251653 TTCACTGCTACTCCCTCCGT 60.252 55.000 0.00 0.00 0.00 4.69
3827 4782 0.680280 TCACTGCTACTCCCTCCGTC 60.680 60.000 0.00 0.00 0.00 4.79
3828 4783 1.380112 ACTGCTACTCCCTCCGTCC 60.380 63.158 0.00 0.00 0.00 4.79
3829 4784 2.439701 TGCTACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
3830 4785 3.217743 GCTACTCCCTCCGTCCGG 61.218 72.222 0.00 0.00 0.00 5.14
3831 4786 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3832 4787 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3833 4788 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3834 4789 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3835 4790 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3836 4791 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3837 4792 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3838 4793 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
3839 4794 0.388294 CCTCCGTCCGGAAATACTCC 59.612 60.000 5.23 0.00 44.66 3.85
3840 4795 0.388294 CTCCGTCCGGAAATACTCCC 59.612 60.000 5.23 0.00 44.66 4.30
3841 4796 0.032813 TCCGTCCGGAAATACTCCCT 60.033 55.000 5.23 0.00 41.87 4.20
3842 4797 0.388294 CCGTCCGGAAATACTCCCTC 59.612 60.000 5.23 0.00 41.87 4.30
3843 4798 0.388294 CGTCCGGAAATACTCCCTCC 59.612 60.000 5.23 0.00 41.87 4.30
3847 4802 2.220479 CGGAAATACTCCCTCCGTTC 57.780 55.000 1.61 0.00 45.62 3.95
3848 4803 1.202498 CGGAAATACTCCCTCCGTTCC 60.202 57.143 1.61 0.00 45.62 3.62
3849 4804 2.117051 GGAAATACTCCCTCCGTTCCT 58.883 52.381 0.00 0.00 38.44 3.36
3850 4805 3.303049 GGAAATACTCCCTCCGTTCCTA 58.697 50.000 0.00 0.00 38.44 2.94
3851 4806 3.708121 GGAAATACTCCCTCCGTTCCTAA 59.292 47.826 0.00 0.00 38.44 2.69
3852 4807 4.162888 GGAAATACTCCCTCCGTTCCTAAA 59.837 45.833 0.00 0.00 38.44 1.85
3853 4808 5.163227 GGAAATACTCCCTCCGTTCCTAAAT 60.163 44.000 0.00 0.00 38.44 1.40
3854 4809 6.042437 GGAAATACTCCCTCCGTTCCTAAATA 59.958 42.308 0.00 0.00 38.44 1.40
3855 4810 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
3856 4811 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3857 4812 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3858 4813 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3859 4814 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3860 4815 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3861 4816 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3862 4817 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3863 4818 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3864 4819 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3865 4820 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3866 4821 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3867 4822 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
3868 4823 8.448615 CCGTTCCTAAATACTTGTCTTTTTAGG 58.551 37.037 12.11 12.11 46.30 2.69
3869 4824 7.961283 CGTTCCTAAATACTTGTCTTTTTAGGC 59.039 37.037 13.09 3.06 45.31 3.93
3870 4825 8.789762 GTTCCTAAATACTTGTCTTTTTAGGCA 58.210 33.333 13.09 2.93 45.31 4.75
3871 4826 9.528489 TTCCTAAATACTTGTCTTTTTAGGCAT 57.472 29.630 13.09 0.00 45.31 4.40
3872 4827 9.528489 TCCTAAATACTTGTCTTTTTAGGCATT 57.472 29.630 13.09 0.00 45.31 3.56
3877 4832 9.476202 AATACTTGTCTTTTTAGGCATTTCAAC 57.524 29.630 0.00 0.00 0.00 3.18
3878 4833 6.872920 ACTTGTCTTTTTAGGCATTTCAACA 58.127 32.000 0.00 0.00 0.00 3.33
3879 4834 7.327214 ACTTGTCTTTTTAGGCATTTCAACAA 58.673 30.769 0.00 0.00 0.00 2.83
3880 4835 7.492344 ACTTGTCTTTTTAGGCATTTCAACAAG 59.508 33.333 0.00 0.00 43.26 3.16
3881 4836 6.872920 TGTCTTTTTAGGCATTTCAACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
3882 4837 6.756074 TGTCTTTTTAGGCATTTCAACAAGTG 59.244 34.615 0.00 0.00 0.00 3.16
3883 4838 6.978080 GTCTTTTTAGGCATTTCAACAAGTGA 59.022 34.615 0.00 0.00 0.00 3.41
3884 4839 6.978080 TCTTTTTAGGCATTTCAACAAGTGAC 59.022 34.615 0.00 0.00 35.39 3.67
3885 4840 6.463995 TTTTAGGCATTTCAACAAGTGACT 57.536 33.333 0.00 0.00 40.60 3.41
3886 4841 7.575414 TTTTAGGCATTTCAACAAGTGACTA 57.425 32.000 0.00 0.00 38.51 2.59
3887 4842 6.554334 TTAGGCATTTCAACAAGTGACTAC 57.446 37.500 0.00 0.00 39.07 2.73
3888 4843 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3889 4844 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3890 4845 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3891 4846 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
3892 4847 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3893 4848 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3894 4849 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3895 4850 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3896 4851 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3897 4852 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3898 4853 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3899 4854 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3900 4855 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3901 4856 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3902 4857 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3903 4858 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3904 4859 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3905 4860 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3906 4861 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3907 4862 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3908 4863 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3909 4864 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3910 4865 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3911 4866 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3912 4867 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3913 4868 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3914 4869 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3915 4870 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3956 4911 5.608676 ACATCCGTATGTAGTAGTCATCG 57.391 43.478 0.00 0.00 44.66 3.84
3957 4912 4.454847 ACATCCGTATGTAGTAGTCATCGG 59.545 45.833 0.00 0.00 44.66 4.18
3958 4913 4.341366 TCCGTATGTAGTAGTCATCGGA 57.659 45.455 0.00 0.00 39.74 4.55
3959 4914 4.707105 TCCGTATGTAGTAGTCATCGGAA 58.293 43.478 0.00 0.00 39.45 4.30
3960 4915 5.125356 TCCGTATGTAGTAGTCATCGGAAA 58.875 41.667 0.00 0.00 39.45 3.13
3961 4916 5.766670 TCCGTATGTAGTAGTCATCGGAAAT 59.233 40.000 0.00 0.00 39.45 2.17
3962 4917 5.856986 CCGTATGTAGTAGTCATCGGAAATG 59.143 44.000 0.00 0.00 37.75 2.32
3963 4918 6.436261 CGTATGTAGTAGTCATCGGAAATGT 58.564 40.000 0.00 0.00 0.00 2.71
3964 4919 6.577800 CGTATGTAGTAGTCATCGGAAATGTC 59.422 42.308 0.00 0.00 0.00 3.06
3965 4920 6.716934 ATGTAGTAGTCATCGGAAATGTCT 57.283 37.500 0.00 0.00 0.00 3.41
3966 4921 7.818997 ATGTAGTAGTCATCGGAAATGTCTA 57.181 36.000 0.00 0.00 0.00 2.59
3967 4922 7.260558 TGTAGTAGTCATCGGAAATGTCTAG 57.739 40.000 0.00 0.00 0.00 2.43
3968 4923 7.052248 TGTAGTAGTCATCGGAAATGTCTAGA 58.948 38.462 0.00 0.00 0.00 2.43
3969 4924 7.555195 TGTAGTAGTCATCGGAAATGTCTAGAA 59.445 37.037 0.00 0.00 0.00 2.10
3970 4925 7.406031 AGTAGTCATCGGAAATGTCTAGAAA 57.594 36.000 0.00 0.00 0.00 2.52
3971 4926 7.484975 AGTAGTCATCGGAAATGTCTAGAAAG 58.515 38.462 0.00 0.00 0.00 2.62
3972 4927 6.531503 AGTCATCGGAAATGTCTAGAAAGA 57.468 37.500 0.00 0.00 0.00 2.52
3989 4944 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3990 4945 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3991 4946 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3992 4947 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3993 4948 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3994 4949 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3995 4950 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3996 4951 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3997 4952 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3998 4953 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
3999 4954 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4000 4955 3.463048 TTAGGAACGGAGGGAGTACTT 57.537 47.619 0.00 0.00 0.00 2.24
4001 4956 4.591321 TTAGGAACGGAGGGAGTACTTA 57.409 45.455 0.00 0.00 0.00 2.24
4002 4957 3.684408 AGGAACGGAGGGAGTACTTAT 57.316 47.619 0.00 0.00 0.00 1.73
4003 4958 3.564264 AGGAACGGAGGGAGTACTTATC 58.436 50.000 0.00 0.00 0.00 1.75
4004 4959 3.053095 AGGAACGGAGGGAGTACTTATCA 60.053 47.826 0.00 0.00 0.00 2.15
4005 4960 3.896272 GGAACGGAGGGAGTACTTATCAT 59.104 47.826 0.00 0.00 0.00 2.45
4006 4961 4.022155 GGAACGGAGGGAGTACTTATCATC 60.022 50.000 0.00 0.00 0.00 2.92
4007 4962 4.180377 ACGGAGGGAGTACTTATCATCA 57.820 45.455 0.00 0.00 0.00 3.07
4008 4963 4.543689 ACGGAGGGAGTACTTATCATCAA 58.456 43.478 0.00 0.00 0.00 2.57
4009 4964 4.960469 ACGGAGGGAGTACTTATCATCAAA 59.040 41.667 0.00 0.00 0.00 2.69
4010 4965 5.424252 ACGGAGGGAGTACTTATCATCAAAA 59.576 40.000 0.00 0.00 0.00 2.44
4011 4966 6.099845 ACGGAGGGAGTACTTATCATCAAAAT 59.900 38.462 0.00 0.00 0.00 1.82
4012 4967 7.289317 ACGGAGGGAGTACTTATCATCAAAATA 59.711 37.037 0.00 0.00 0.00 1.40
4013 4968 7.815068 CGGAGGGAGTACTTATCATCAAAATAG 59.185 40.741 0.00 0.00 0.00 1.73
4014 4969 8.871125 GGAGGGAGTACTTATCATCAAAATAGA 58.129 37.037 0.00 0.00 0.00 1.98
4079 5034 9.643693 ACATCACTTTTTATCCATTTTGATGAC 57.356 29.630 13.63 0.00 40.95 3.06
4080 5035 9.642327 CATCACTTTTTATCCATTTTGATGACA 57.358 29.630 0.00 0.00 40.95 3.58
4082 5037 9.695526 TCACTTTTTATCCATTTTGATGACAAG 57.304 29.630 0.00 0.00 37.32 3.16
4083 5038 9.480053 CACTTTTTATCCATTTTGATGACAAGT 57.520 29.630 0.00 0.00 33.86 3.16
4091 5046 9.865321 ATCCATTTTGATGACAAGTATTTTCAG 57.135 29.630 0.00 0.00 37.32 3.02
4092 5047 9.076781 TCCATTTTGATGACAAGTATTTTCAGA 57.923 29.630 0.00 0.00 37.32 3.27
4093 5048 9.865321 CCATTTTGATGACAAGTATTTTCAGAT 57.135 29.630 0.00 0.00 37.32 2.90
4095 5050 9.865321 ATTTTGATGACAAGTATTTTCAGATGG 57.135 29.630 0.00 0.00 37.32 3.51
4096 5051 8.634335 TTTGATGACAAGTATTTTCAGATGGA 57.366 30.769 0.00 0.00 37.32 3.41
4097 5052 7.854557 TGATGACAAGTATTTTCAGATGGAG 57.145 36.000 0.00 0.00 0.00 3.86
4098 5053 6.825213 TGATGACAAGTATTTTCAGATGGAGG 59.175 38.462 0.00 0.00 0.00 4.30
4099 5054 5.500234 TGACAAGTATTTTCAGATGGAGGG 58.500 41.667 0.00 0.00 0.00 4.30
4100 5055 5.250543 TGACAAGTATTTTCAGATGGAGGGA 59.749 40.000 0.00 0.00 0.00 4.20
4101 5056 5.749462 ACAAGTATTTTCAGATGGAGGGAG 58.251 41.667 0.00 0.00 0.00 4.30
4124 5079 9.574516 GGAGTATATATTTTCCATTGTGAAGGT 57.425 33.333 9.27 0.00 0.00 3.50
4217 5174 3.914094 GCTGGTGCTCATGATGCA 58.086 55.556 13.62 13.62 38.19 3.96
4284 5241 0.875908 CAGTGTATCGCCGGGTCATG 60.876 60.000 2.18 0.00 0.00 3.07
4290 5247 1.669049 ATCGCCGGGTCATGTTACGA 61.669 55.000 2.18 0.00 0.00 3.43
4310 5267 6.229561 ACGAAAGAACTGCAGATTAGTTTC 57.770 37.500 23.35 18.06 38.42 2.78
4311 5268 5.992217 ACGAAAGAACTGCAGATTAGTTTCT 59.008 36.000 23.35 14.70 38.42 2.52
4312 5269 7.152645 ACGAAAGAACTGCAGATTAGTTTCTA 58.847 34.615 23.35 0.00 38.42 2.10
4313 5270 7.116519 ACGAAAGAACTGCAGATTAGTTTCTAC 59.883 37.037 23.35 13.25 38.42 2.59
4323 5280 6.323225 GCAGATTAGTTTCTACTACTACCCCA 59.677 42.308 0.00 0.00 36.61 4.96
4324 5281 7.683945 GCAGATTAGTTTCTACTACTACCCCAC 60.684 44.444 0.00 0.00 36.61 4.61
4348 5305 7.220300 CACGGTCAACACTAAGATCTGTAATAC 59.780 40.741 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.705290 AAAAACAAGTGACACTTTAAGATTTGT 57.295 25.926 18.27 8.63 36.03 2.83
32 33 2.287909 GCGGGCATAAAAACAAGTGACA 60.288 45.455 0.00 0.00 0.00 3.58
33 34 2.324860 GCGGGCATAAAAACAAGTGAC 58.675 47.619 0.00 0.00 0.00 3.67
51 52 2.173382 CGAGGGAAAAAGCACGCG 59.827 61.111 3.53 3.53 0.00 6.01
59 60 2.025636 AGGAAGAGGACGAGGGAAAA 57.974 50.000 0.00 0.00 0.00 2.29
60 61 2.042706 AGTAGGAAGAGGACGAGGGAAA 59.957 50.000 0.00 0.00 0.00 3.13
61 62 1.639628 AGTAGGAAGAGGACGAGGGAA 59.360 52.381 0.00 0.00 0.00 3.97
62 63 1.296984 AGTAGGAAGAGGACGAGGGA 58.703 55.000 0.00 0.00 0.00 4.20
64 65 1.751924 CCAAGTAGGAAGAGGACGAGG 59.248 57.143 0.00 0.00 41.22 4.63
66 67 1.076677 ACCCAAGTAGGAAGAGGACGA 59.923 52.381 0.00 0.00 41.22 4.20
68 69 1.477295 CGACCCAAGTAGGAAGAGGAC 59.523 57.143 0.00 0.00 41.22 3.85
70 71 1.751924 CTCGACCCAAGTAGGAAGAGG 59.248 57.143 0.00 0.00 41.22 3.69
71 72 1.135333 GCTCGACCCAAGTAGGAAGAG 59.865 57.143 0.00 0.00 41.22 2.85
126 130 3.182263 TCAACTGGTGGGTGGGGG 61.182 66.667 0.00 0.00 32.53 5.40
127 131 1.131303 TAGTCAACTGGTGGGTGGGG 61.131 60.000 0.00 0.00 32.53 4.96
129 133 0.321653 GCTAGTCAACTGGTGGGTGG 60.322 60.000 0.00 0.00 32.53 4.61
168 172 1.630126 AAGGATGGTCAGGCAGCGAT 61.630 55.000 0.00 0.00 0.00 4.58
173 177 2.978156 AAAAGAAGGATGGTCAGGCA 57.022 45.000 0.00 0.00 0.00 4.75
177 181 3.204382 GGGGGATAAAAGAAGGATGGTCA 59.796 47.826 0.00 0.00 0.00 4.02
200 204 3.526534 GTCGAAGAAGAAGAGAATGGGG 58.473 50.000 0.00 0.00 39.69 4.96
201 205 3.182967 CGTCGAAGAAGAAGAGAATGGG 58.817 50.000 0.00 0.00 38.59 4.00
202 206 2.600867 GCGTCGAAGAAGAAGAGAATGG 59.399 50.000 1.37 0.00 38.59 3.16
203 207 2.600867 GGCGTCGAAGAAGAAGAGAATG 59.399 50.000 1.37 0.00 38.59 2.67
204 208 2.494073 AGGCGTCGAAGAAGAAGAGAAT 59.506 45.455 1.37 0.00 38.59 2.40
205 209 1.887198 AGGCGTCGAAGAAGAAGAGAA 59.113 47.619 1.37 0.00 38.59 2.87
206 210 1.200252 CAGGCGTCGAAGAAGAAGAGA 59.800 52.381 1.37 0.00 38.59 3.10
207 211 1.623359 CAGGCGTCGAAGAAGAAGAG 58.377 55.000 1.37 0.00 38.59 2.85
225 229 1.528076 GTGTGTGTGGTGGGATGCA 60.528 57.895 0.00 0.00 0.00 3.96
229 233 0.107410 GTTCAGTGTGTGTGGTGGGA 60.107 55.000 0.00 0.00 0.00 4.37
238 242 1.472728 GGACTTGACGGTTCAGTGTGT 60.473 52.381 0.00 0.00 31.71 3.72
244 248 1.663739 CTCGGGACTTGACGGTTCA 59.336 57.895 0.00 0.00 0.00 3.18
258 262 2.047274 TTGCGGGAGAAAGCTCGG 60.047 61.111 0.00 0.00 42.25 4.63
281 285 3.755628 GTCGCAGCTACCCGTGGA 61.756 66.667 0.00 0.00 0.00 4.02
289 293 1.137086 GAGGAGGAAATGTCGCAGCTA 59.863 52.381 0.00 0.00 0.00 3.32
378 383 4.437820 GTGCAAGTCGATTTTGTTGAAGAC 59.562 41.667 12.38 0.00 0.00 3.01
405 410 9.100554 TGATAACTAAAGTCACGTGAAAAAGAA 57.899 29.630 21.95 9.53 0.00 2.52
475 483 0.321564 TTCCCACACATGCTCCTTCG 60.322 55.000 0.00 0.00 0.00 3.79
483 491 9.019764 GTTTATTTAAATCGATTCCCACACATG 57.980 33.333 11.83 0.00 0.00 3.21
523 532 2.032054 TGTGCTTTGAGAAAGTGCGAAG 59.968 45.455 0.00 0.00 40.64 3.79
527 536 4.362279 TGAAATGTGCTTTGAGAAAGTGC 58.638 39.130 0.00 0.00 40.64 4.40
592 605 2.557056 CGGAATTGATAGGCTCGGTCTA 59.443 50.000 0.00 0.00 0.00 2.59
612 625 3.312697 GGAGGGAAGCATTTTAAGCTACG 59.687 47.826 0.00 0.00 42.53 3.51
613 626 3.312697 CGGAGGGAAGCATTTTAAGCTAC 59.687 47.826 0.00 0.00 42.53 3.58
617 630 5.890424 TTTACGGAGGGAAGCATTTTAAG 57.110 39.130 0.00 0.00 0.00 1.85
652 856 8.592998 GTGTCACTACTTTAATGATCTAAACGG 58.407 37.037 0.00 0.00 0.00 4.44
653 857 9.355215 AGTGTCACTACTTTAATGATCTAAACG 57.645 33.333 2.87 0.00 0.00 3.60
679 883 9.595823 CGACTCCCTCTACAAAGAAATATAAAA 57.404 33.333 0.00 0.00 0.00 1.52
681 885 8.529424 TCGACTCCCTCTACAAAGAAATATAA 57.471 34.615 0.00 0.00 0.00 0.98
682 886 8.577296 CATCGACTCCCTCTACAAAGAAATATA 58.423 37.037 0.00 0.00 0.00 0.86
683 887 7.437748 CATCGACTCCCTCTACAAAGAAATAT 58.562 38.462 0.00 0.00 0.00 1.28
684 888 6.183360 CCATCGACTCCCTCTACAAAGAAATA 60.183 42.308 0.00 0.00 0.00 1.40
685 889 5.395768 CCATCGACTCCCTCTACAAAGAAAT 60.396 44.000 0.00 0.00 0.00 2.17
687 891 3.447586 CCATCGACTCCCTCTACAAAGAA 59.552 47.826 0.00 0.00 0.00 2.52
689 893 2.761208 ACCATCGACTCCCTCTACAAAG 59.239 50.000 0.00 0.00 0.00 2.77
691 895 2.526888 ACCATCGACTCCCTCTACAA 57.473 50.000 0.00 0.00 0.00 2.41
692 896 2.496070 CAAACCATCGACTCCCTCTACA 59.504 50.000 0.00 0.00 0.00 2.74
693 897 2.496470 ACAAACCATCGACTCCCTCTAC 59.504 50.000 0.00 0.00 0.00 2.59
694 898 2.816411 ACAAACCATCGACTCCCTCTA 58.184 47.619 0.00 0.00 0.00 2.43
704 911 4.979197 TCAAAAATCCGAAACAAACCATCG 59.021 37.500 0.00 0.00 36.39 3.84
711 918 3.117046 GCCGTTCAAAAATCCGAAACAA 58.883 40.909 0.00 0.00 0.00 2.83
713 920 2.724174 CTGCCGTTCAAAAATCCGAAAC 59.276 45.455 0.00 0.00 0.00 2.78
714 921 2.619177 TCTGCCGTTCAAAAATCCGAAA 59.381 40.909 0.00 0.00 0.00 3.46
717 924 1.729149 GCTCTGCCGTTCAAAAATCCG 60.729 52.381 0.00 0.00 0.00 4.18
768 975 8.283291 CGTCTATTTTCTGTTTTGCTTTCTACT 58.717 33.333 0.00 0.00 0.00 2.57
769 976 7.534239 CCGTCTATTTTCTGTTTTGCTTTCTAC 59.466 37.037 0.00 0.00 0.00 2.59
770 977 7.442969 TCCGTCTATTTTCTGTTTTGCTTTCTA 59.557 33.333 0.00 0.00 0.00 2.10
867 1076 4.890581 ACGCAATGGGGTGCTTTAATAATA 59.109 37.500 1.62 0.00 42.62 0.98
883 1092 4.389992 ACAGAGTACAATCAAGACGCAATG 59.610 41.667 0.00 0.00 0.00 2.82
907 1116 8.019669 TCGTAGTTTCAGAATTGAGTGTAGTAC 58.980 37.037 0.00 0.00 34.15 2.73
1230 1450 1.764854 GGCGGTGGGGATAGAGGAA 60.765 63.158 0.00 0.00 0.00 3.36
1431 1652 6.863126 AGAAAGCACAAAATTAAGAATGACGG 59.137 34.615 0.00 0.00 0.00 4.79
1433 1654 7.061094 CCGAGAAAGCACAAAATTAAGAATGAC 59.939 37.037 0.00 0.00 0.00 3.06
1438 1659 6.262273 AGAACCGAGAAAGCACAAAATTAAGA 59.738 34.615 0.00 0.00 0.00 2.10
1463 1686 5.410924 CAGTGAGAATTCTACATCGACCAA 58.589 41.667 8.25 0.00 0.00 3.67
1479 1702 6.805215 GGAAATCCAACCACACCAGTGAGA 62.805 50.000 4.48 0.00 41.21 3.27
1594 1819 0.459237 CAGTAAGGTCTCTGCGGCTG 60.459 60.000 0.00 0.00 0.00 4.85
1629 1860 1.289160 TGGGCAGGACTAATGAAGCT 58.711 50.000 0.00 0.00 0.00 3.74
1639 1870 1.087501 GAATCGAACTTGGGCAGGAC 58.912 55.000 0.00 0.00 0.00 3.85
1692 1923 0.318699 TCAACGAAGACACGGCAGAG 60.319 55.000 0.00 0.00 37.61 3.35
1703 1934 6.953743 CGTTATCTACACCAAAATCAACGAAG 59.046 38.462 0.00 0.00 38.71 3.79
1707 1938 5.123344 AGGCGTTATCTACACCAAAATCAAC 59.877 40.000 0.00 0.00 30.99 3.18
1715 1950 2.730382 TCAGAGGCGTTATCTACACCA 58.270 47.619 0.00 0.00 30.99 4.17
1752 1987 0.395448 AGTAGAGGGACGGCCAGTAC 60.395 60.000 11.00 7.29 35.15 2.73
1856 2091 6.332735 TGATACCAATCGAGGAGTATTCTG 57.667 41.667 0.00 0.00 34.60 3.02
1858 2093 6.030849 CGATGATACCAATCGAGGAGTATTC 58.969 44.000 0.00 0.00 39.91 1.75
1860 2095 5.254115 TCGATGATACCAATCGAGGAGTAT 58.746 41.667 4.51 0.99 41.21 2.12
1868 2103 6.073058 ACAATTCCAATCGATGATACCAATCG 60.073 38.462 0.00 0.00 38.98 3.34
1869 2104 7.041167 TGACAATTCCAATCGATGATACCAATC 60.041 37.037 0.00 0.00 0.00 2.67
1870 2105 6.772233 TGACAATTCCAATCGATGATACCAAT 59.228 34.615 0.00 0.00 0.00 3.16
1871 2106 6.038161 GTGACAATTCCAATCGATGATACCAA 59.962 38.462 0.00 0.00 0.00 3.67
1872 2107 5.527214 GTGACAATTCCAATCGATGATACCA 59.473 40.000 0.00 0.00 0.00 3.25
1873 2108 5.760253 AGTGACAATTCCAATCGATGATACC 59.240 40.000 0.00 0.00 0.00 2.73
1874 2109 6.851222 AGTGACAATTCCAATCGATGATAC 57.149 37.500 0.00 0.00 0.00 2.24
1875 2110 7.441157 GGTTAGTGACAATTCCAATCGATGATA 59.559 37.037 0.00 0.00 0.00 2.15
1876 2111 6.260936 GGTTAGTGACAATTCCAATCGATGAT 59.739 38.462 0.00 0.00 0.00 2.45
1977 2213 2.460757 TTACCCCACTAAACGACAGC 57.539 50.000 0.00 0.00 0.00 4.40
1980 2216 6.205270 TGAAGAAAATTACCCCACTAAACGAC 59.795 38.462 0.00 0.00 0.00 4.34
2069 2305 6.203338 GGAAATGAAACAATGTTTGTGCTCAT 59.797 34.615 16.78 9.96 44.59 2.90
2070 2306 5.523188 GGAAATGAAACAATGTTTGTGCTCA 59.477 36.000 16.78 7.96 44.59 4.26
2086 2322 7.414429 CGATGAAGACTTAGCAATGGAAATGAA 60.414 37.037 0.00 0.00 0.00 2.57
2107 2343 9.232082 CTCTGTGAAAAATTAAACAAACGATGA 57.768 29.630 0.00 0.00 0.00 2.92
2127 2363 2.159421 GCATGTTCCATGCTTCTCTGTG 60.159 50.000 19.18 0.00 41.52 3.66
2152 2388 3.874383 TTCTTCATGAACAACAGGGGA 57.126 42.857 3.38 0.00 0.00 4.81
2245 2481 7.568199 AAAGAATAATGCGCTACACCTAATT 57.432 32.000 9.73 0.00 0.00 1.40
2285 2523 6.128145 GCTTAAAGCCAACAAAAGAAACCAAA 60.128 34.615 0.00 0.00 34.48 3.28
2371 2610 4.348656 TCGTATGCACTACAATTCGAGTC 58.651 43.478 0.00 0.00 0.00 3.36
2440 2679 8.945481 TGCAATTCCAATCCAAATTATAACAG 57.055 30.769 0.00 0.00 0.00 3.16
2604 2852 6.127253 CCTTCAAATCCTTGGTGAAGCATAAT 60.127 38.462 10.99 0.00 44.49 1.28
2659 2907 7.172875 TCACGTAAATAAAAATGGAAACCGAGA 59.827 33.333 0.00 0.00 0.00 4.04
2668 2916 9.893305 AAGTTCTCTTCACGTAAATAAAAATGG 57.107 29.630 0.00 0.00 0.00 3.16
2697 2947 3.591196 TGGCAACATTATTCCTTGCAC 57.409 42.857 4.18 0.00 46.17 4.57
2730 2982 3.097877 TGATCGTATGCTGGACATCAC 57.902 47.619 0.00 0.00 40.38 3.06
2740 2992 9.284594 GATTTAGAGAGATAGTTGATCGTATGC 57.715 37.037 0.00 0.00 39.80 3.14
2766 3604 6.765989 TCCGATTCACCTATTTTGTTATCAGG 59.234 38.462 0.00 0.00 0.00 3.86
2823 3662 3.891366 ACAGACCAAAATTTCCCAGACAG 59.109 43.478 0.00 0.00 0.00 3.51
2824 3663 3.909732 ACAGACCAAAATTTCCCAGACA 58.090 40.909 0.00 0.00 0.00 3.41
2825 3664 5.070685 ACTACAGACCAAAATTTCCCAGAC 58.929 41.667 0.00 0.00 0.00 3.51
2896 3736 2.680339 GACACAATAGGAGAAAGCAGCC 59.320 50.000 0.00 0.00 0.00 4.85
2904 3744 5.428253 GCCTGTTTATGACACAATAGGAGA 58.572 41.667 13.46 0.00 34.06 3.71
2992 3832 6.716934 TTGACCAAAAATACTTGCAGGTAA 57.283 33.333 13.14 0.00 0.00 2.85
3009 3849 7.649533 AATGAAGAGATATGCATTTTGACCA 57.350 32.000 3.54 0.00 0.00 4.02
3022 3862 7.361457 AGAACGTGGGAATAATGAAGAGATA 57.639 36.000 0.00 0.00 0.00 1.98
3033 3873 2.901192 TGAAGTGGAGAACGTGGGAATA 59.099 45.455 0.00 0.00 0.00 1.75
3037 3877 0.393077 ACTGAAGTGGAGAACGTGGG 59.607 55.000 0.00 0.00 0.00 4.61
3045 3885 6.808008 ACAATAACAATGACTGAAGTGGAG 57.192 37.500 0.00 0.00 0.00 3.86
3076 3916 7.719633 GGCTGGAATAAAATCAAGGTGAGTATA 59.280 37.037 0.00 0.00 0.00 1.47
3077 3917 6.547510 GGCTGGAATAAAATCAAGGTGAGTAT 59.452 38.462 0.00 0.00 0.00 2.12
3079 3919 4.706962 GGCTGGAATAAAATCAAGGTGAGT 59.293 41.667 0.00 0.00 0.00 3.41
3080 3920 4.952335 AGGCTGGAATAAAATCAAGGTGAG 59.048 41.667 0.00 0.00 0.00 3.51
3082 3922 4.201950 CGAGGCTGGAATAAAATCAAGGTG 60.202 45.833 0.00 0.00 0.00 4.00
3083 3923 3.947834 CGAGGCTGGAATAAAATCAAGGT 59.052 43.478 0.00 0.00 0.00 3.50
3084 3924 3.243201 GCGAGGCTGGAATAAAATCAAGG 60.243 47.826 0.00 0.00 0.00 3.61
3164 4004 1.885887 TGTTGGCAGGGAGATTTTTCG 59.114 47.619 0.00 0.00 0.00 3.46
3165 4005 5.360714 TCATATGTTGGCAGGGAGATTTTTC 59.639 40.000 1.90 0.00 0.00 2.29
3230 4070 7.415877 GGTTGAACAACACATACCAAGTAAACT 60.416 37.037 17.43 0.00 42.85 2.66
3231 4071 6.693978 GGTTGAACAACACATACCAAGTAAAC 59.306 38.462 17.43 0.00 42.85 2.01
3233 4073 5.299782 GGGTTGAACAACACATACCAAGTAA 59.700 40.000 17.43 0.00 43.90 2.24
3234 4074 4.822896 GGGTTGAACAACACATACCAAGTA 59.177 41.667 17.43 0.00 43.90 2.24
3235 4075 3.634910 GGGTTGAACAACACATACCAAGT 59.365 43.478 17.43 0.00 43.90 3.16
3236 4076 3.005367 GGGGTTGAACAACACATACCAAG 59.995 47.826 19.26 0.00 46.17 3.61
3239 4079 2.556622 CAGGGGTTGAACAACACATACC 59.443 50.000 19.26 10.61 46.17 2.73
3240 4080 2.556622 CCAGGGGTTGAACAACACATAC 59.443 50.000 19.26 4.79 46.17 2.39
3288 4129 5.805486 GTCGAATTTGTGAGTACTGCAGATA 59.195 40.000 23.35 6.31 0.00 1.98
3373 4214 4.090090 TCCTCATAGCCTAGCAATACTCC 58.910 47.826 0.00 0.00 0.00 3.85
3433 4274 2.749682 CCAGCACCTGTGGCTACA 59.250 61.111 1.86 1.86 40.23 2.74
3508 4350 5.163513 CCAAGTTGTTCTAATGTGGAATGC 58.836 41.667 1.45 0.00 0.00 3.56
3688 4643 1.659794 GCCGGAACAAACTGCATGT 59.340 52.632 5.05 0.00 0.00 3.21
3740 4695 0.389817 TCAAGAATGTCTCGGTGGCG 60.390 55.000 0.00 0.00 0.00 5.69
3742 4697 3.599343 TCATTCAAGAATGTCTCGGTGG 58.401 45.455 19.10 0.00 46.15 4.61
3790 4745 4.683320 CAGTGAATGCGATGACGAGATATT 59.317 41.667 0.00 0.00 42.66 1.28
3793 4748 2.467838 CAGTGAATGCGATGACGAGAT 58.532 47.619 0.00 0.00 42.66 2.75
3817 4772 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3818 4773 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3819 4774 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
3820 4775 0.388294 GGAGTATTTCCGGACGGAGG 59.612 60.000 13.64 0.00 46.06 4.30
3821 4776 3.961576 GGAGTATTTCCGGACGGAG 57.038 57.895 13.64 0.00 46.06 4.63
3829 4784 2.117051 AGGAACGGAGGGAGTATTTCC 58.883 52.381 0.00 0.00 46.00 3.13
3830 4785 5.349061 TTTAGGAACGGAGGGAGTATTTC 57.651 43.478 0.00 0.00 0.00 2.17
3831 4786 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
3832 4787 6.141790 AGTATTTAGGAACGGAGGGAGTATT 58.858 40.000 0.00 0.00 0.00 1.89
3833 4788 5.713807 AGTATTTAGGAACGGAGGGAGTAT 58.286 41.667 0.00 0.00 0.00 2.12
3834 4789 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3835 4790 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3836 4791 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3837 4792 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3838 4793 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3839 4794 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3840 4795 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3841 4796 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
3851 4806 9.476202 GTTGAAATGCCTAAAAAGACAAGTATT 57.524 29.630 0.00 0.00 0.00 1.89
3852 4807 8.637986 TGTTGAAATGCCTAAAAAGACAAGTAT 58.362 29.630 0.00 0.00 0.00 2.12
3853 4808 8.001881 TGTTGAAATGCCTAAAAAGACAAGTA 57.998 30.769 0.00 0.00 0.00 2.24
3854 4809 6.872920 TGTTGAAATGCCTAAAAAGACAAGT 58.127 32.000 0.00 0.00 0.00 3.16
3855 4810 7.492344 ACTTGTTGAAATGCCTAAAAAGACAAG 59.508 33.333 0.00 0.00 43.36 3.16
3856 4811 7.277539 CACTTGTTGAAATGCCTAAAAAGACAA 59.722 33.333 0.00 0.00 0.00 3.18
3857 4812 6.756074 CACTTGTTGAAATGCCTAAAAAGACA 59.244 34.615 0.00 0.00 0.00 3.41
3858 4813 6.978080 TCACTTGTTGAAATGCCTAAAAAGAC 59.022 34.615 0.00 0.00 0.00 3.01
3859 4814 6.978080 GTCACTTGTTGAAATGCCTAAAAAGA 59.022 34.615 0.00 0.00 35.39 2.52
3860 4815 6.980397 AGTCACTTGTTGAAATGCCTAAAAAG 59.020 34.615 0.00 0.00 35.39 2.27
3861 4816 6.872920 AGTCACTTGTTGAAATGCCTAAAAA 58.127 32.000 0.00 0.00 35.39 1.94
3862 4817 6.463995 AGTCACTTGTTGAAATGCCTAAAA 57.536 33.333 0.00 0.00 35.39 1.52
3863 4818 6.544197 TGTAGTCACTTGTTGAAATGCCTAAA 59.456 34.615 0.00 0.00 35.39 1.85
3864 4819 6.058833 TGTAGTCACTTGTTGAAATGCCTAA 58.941 36.000 0.00 0.00 35.39 2.69
3865 4820 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
3866 4821 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3867 4822 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3868 4823 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3869 4824 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3870 4825 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3871 4826 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3872 4827 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3873 4828 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3874 4829 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3875 4830 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3876 4831 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3877 4832 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3878 4833 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3879 4834 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3880 4835 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3881 4836 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3882 4837 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3883 4838 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3884 4839 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3885 4840 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3886 4841 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3887 4842 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3888 4843 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3889 4844 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3890 4845 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3891 4846 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3892 4847 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3893 4848 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3894 4849 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
3895 4850 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
3932 4887 6.315642 CCGATGACTACTACATACGGATGTAT 59.684 42.308 20.64 13.02 45.42 2.29
3933 4888 5.640783 CCGATGACTACTACATACGGATGTA 59.359 44.000 19.32 19.32 44.77 2.29
3935 4890 4.694037 TCCGATGACTACTACATACGGATG 59.306 45.833 5.94 5.94 39.65 3.51
3936 4891 4.903054 TCCGATGACTACTACATACGGAT 58.097 43.478 0.00 0.00 39.65 4.18
3937 4892 4.341366 TCCGATGACTACTACATACGGA 57.659 45.455 0.00 0.00 40.81 4.69
3938 4893 5.428496 TTTCCGATGACTACTACATACGG 57.572 43.478 0.00 0.00 38.47 4.02
3939 4894 6.436261 ACATTTCCGATGACTACTACATACG 58.564 40.000 0.00 0.00 0.00 3.06
3940 4895 7.649973 AGACATTTCCGATGACTACTACATAC 58.350 38.462 0.00 0.00 0.00 2.39
3941 4896 7.818997 AGACATTTCCGATGACTACTACATA 57.181 36.000 0.00 0.00 0.00 2.29
3942 4897 6.716934 AGACATTTCCGATGACTACTACAT 57.283 37.500 0.00 0.00 0.00 2.29
3943 4898 7.052248 TCTAGACATTTCCGATGACTACTACA 58.948 38.462 0.00 0.00 0.00 2.74
3944 4899 7.493743 TCTAGACATTTCCGATGACTACTAC 57.506 40.000 0.00 0.00 0.00 2.73
3945 4900 8.515695 TTTCTAGACATTTCCGATGACTACTA 57.484 34.615 0.00 0.00 0.00 1.82
3946 4901 7.339721 TCTTTCTAGACATTTCCGATGACTACT 59.660 37.037 0.00 0.00 0.00 2.57
3947 4902 7.481642 TCTTTCTAGACATTTCCGATGACTAC 58.518 38.462 0.00 0.00 0.00 2.73
3948 4903 7.640597 TCTTTCTAGACATTTCCGATGACTA 57.359 36.000 0.00 0.00 0.00 2.59
3949 4904 6.531503 TCTTTCTAGACATTTCCGATGACT 57.468 37.500 0.00 0.00 0.00 3.41
3963 4918 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3964 4919 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3965 4920 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3966 4921 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3967 4922 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3968 4923 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3969 4924 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3970 4925 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3971 4926 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3972 4927 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3973 4928 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3974 4929 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3975 4930 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3976 4931 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3977 4932 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3978 4933 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3979 4934 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3980 4935 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
3981 4936 4.166725 TGATAAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
3982 4937 3.053095 TGATAAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
3983 4938 3.294214 TGATAAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3984 4939 4.583489 TGATGATAAGTACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
3985 4940 4.543689 TGATGATAAGTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
3986 4941 4.180377 TGATGATAAGTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
3987 4942 5.531122 TTTGATGATAAGTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
3988 4943 8.871125 TCTATTTTGATGATAAGTACTCCCTCC 58.129 37.037 0.00 0.00 0.00 4.30
4053 5008 9.643693 GTCATCAAAATGGATAAAAAGTGATGT 57.356 29.630 9.42 0.00 41.09 3.06
4054 5009 9.642327 TGTCATCAAAATGGATAAAAAGTGATG 57.358 29.630 0.00 0.00 41.46 3.07
4056 5011 9.695526 CTTGTCATCAAAATGGATAAAAAGTGA 57.304 29.630 0.00 0.00 33.42 3.41
4057 5012 9.480053 ACTTGTCATCAAAATGGATAAAAAGTG 57.520 29.630 0.00 0.00 33.42 3.16
4065 5020 9.865321 CTGAAAATACTTGTCATCAAAATGGAT 57.135 29.630 0.00 0.00 33.42 3.41
4066 5021 9.076781 TCTGAAAATACTTGTCATCAAAATGGA 57.923 29.630 0.00 0.00 33.42 3.41
4067 5022 9.865321 ATCTGAAAATACTTGTCATCAAAATGG 57.135 29.630 0.00 0.00 33.42 3.16
4069 5024 9.865321 CCATCTGAAAATACTTGTCATCAAAAT 57.135 29.630 0.00 0.00 32.87 1.82
4070 5025 9.076781 TCCATCTGAAAATACTTGTCATCAAAA 57.923 29.630 0.00 0.00 32.87 2.44
4071 5026 8.634335 TCCATCTGAAAATACTTGTCATCAAA 57.366 30.769 0.00 0.00 32.87 2.69
4072 5027 7.337689 CCTCCATCTGAAAATACTTGTCATCAA 59.662 37.037 0.00 0.00 0.00 2.57
4073 5028 6.825213 CCTCCATCTGAAAATACTTGTCATCA 59.175 38.462 0.00 0.00 0.00 3.07
4074 5029 6.261826 CCCTCCATCTGAAAATACTTGTCATC 59.738 42.308 0.00 0.00 0.00 2.92
4075 5030 6.069440 TCCCTCCATCTGAAAATACTTGTCAT 60.069 38.462 0.00 0.00 0.00 3.06
4076 5031 5.250543 TCCCTCCATCTGAAAATACTTGTCA 59.749 40.000 0.00 0.00 0.00 3.58
4077 5032 5.745227 TCCCTCCATCTGAAAATACTTGTC 58.255 41.667 0.00 0.00 0.00 3.18
4078 5033 5.251700 ACTCCCTCCATCTGAAAATACTTGT 59.748 40.000 0.00 0.00 0.00 3.16
4079 5034 5.749462 ACTCCCTCCATCTGAAAATACTTG 58.251 41.667 0.00 0.00 0.00 3.16
4080 5035 7.698163 ATACTCCCTCCATCTGAAAATACTT 57.302 36.000 0.00 0.00 0.00 2.24
4081 5036 8.980832 ATATACTCCCTCCATCTGAAAATACT 57.019 34.615 0.00 0.00 0.00 2.12
4087 5042 8.826765 GGAAAATATATACTCCCTCCATCTGAA 58.173 37.037 2.73 0.00 0.00 3.02
4088 5043 7.961431 TGGAAAATATATACTCCCTCCATCTGA 59.039 37.037 9.49 0.00 0.00 3.27
4089 5044 8.150827 TGGAAAATATATACTCCCTCCATCTG 57.849 38.462 9.49 0.00 0.00 2.90
4090 5045 8.940012 ATGGAAAATATATACTCCCTCCATCT 57.060 34.615 9.49 0.00 37.82 2.90
4091 5046 9.401058 CAATGGAAAATATATACTCCCTCCATC 57.599 37.037 11.31 0.00 40.67 3.51
4092 5047 8.904963 ACAATGGAAAATATATACTCCCTCCAT 58.095 33.333 9.49 0.00 42.79 3.41
4093 5048 8.163408 CACAATGGAAAATATATACTCCCTCCA 58.837 37.037 9.49 0.00 36.23 3.86
4094 5049 8.383175 TCACAATGGAAAATATATACTCCCTCC 58.617 37.037 9.49 0.00 0.00 4.30
4095 5050 9.793259 TTCACAATGGAAAATATATACTCCCTC 57.207 33.333 9.49 0.00 0.00 4.30
4096 5051 9.799106 CTTCACAATGGAAAATATATACTCCCT 57.201 33.333 9.49 0.00 0.00 4.20
4097 5052 9.014297 CCTTCACAATGGAAAATATATACTCCC 57.986 37.037 9.49 0.36 0.00 4.30
4098 5053 9.574516 ACCTTCACAATGGAAAATATATACTCC 57.425 33.333 6.19 6.19 0.00 3.85
4124 5079 4.651503 TGGGTGCAAAGTCTCCATTTTTAA 59.348 37.500 0.00 0.00 0.00 1.52
4125 5080 4.219115 TGGGTGCAAAGTCTCCATTTTTA 58.781 39.130 0.00 0.00 0.00 1.52
4266 5223 1.327690 ACATGACCCGGCGATACACT 61.328 55.000 9.30 0.00 0.00 3.55
4267 5224 0.461339 AACATGACCCGGCGATACAC 60.461 55.000 9.30 0.00 0.00 2.90
4284 5241 6.707599 ACTAATCTGCAGTTCTTTCGTAAC 57.292 37.500 14.67 0.00 0.00 2.50
4290 5247 9.425577 GTAGTAGAAACTAATCTGCAGTTCTTT 57.574 33.333 17.14 10.53 39.90 2.52
4323 5280 5.717078 TTACAGATCTTAGTGTTGACCGT 57.283 39.130 0.00 0.00 0.00 4.83
4324 5281 6.696148 GGTATTACAGATCTTAGTGTTGACCG 59.304 42.308 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.