Multiple sequence alignment - TraesCS3B01G430000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G430000 chr3B 100.000 6205 0 0 2326 8530 669437894 669431690 0.000000e+00 11459.0
1 TraesCS3B01G430000 chr3B 100.000 1986 0 0 1 1986 669440219 669438234 0.000000e+00 3668.0
2 TraesCS3B01G430000 chr3B 97.882 1086 22 1 5751 6836 34684296 34685380 0.000000e+00 1877.0
3 TraesCS3B01G430000 chr3A 95.386 3121 114 17 2326 5427 645140540 645137431 0.000000e+00 4939.0
4 TraesCS3B01G430000 chr3A 85.849 1272 107 31 731 1937 645141856 645140593 0.000000e+00 1284.0
5 TraesCS3B01G430000 chr3A 88.784 954 84 10 7593 8530 645136609 645135663 0.000000e+00 1147.0
6 TraesCS3B01G430000 chr3A 93.447 763 31 4 6842 7587 645137444 645136684 0.000000e+00 1114.0
7 TraesCS3B01G430000 chr3A 86.792 318 27 5 1 315 645145390 645145085 2.950000e-89 340.0
8 TraesCS3B01G430000 chr3D 94.076 3123 120 25 2326 5427 507038143 507035065 0.000000e+00 4682.0
9 TraesCS3B01G430000 chr3D 88.155 1604 98 36 1 1548 507040310 507038743 0.000000e+00 1825.0
10 TraesCS3B01G430000 chr3D 93.194 764 33 11 6842 7587 507035078 507034316 0.000000e+00 1105.0
11 TraesCS3B01G430000 chr3D 89.528 869 73 7 7671 8530 507034195 507033336 0.000000e+00 1085.0
12 TraesCS3B01G430000 chr3D 89.858 424 41 1 1545 1968 507038582 507038161 2.090000e-150 544.0
13 TraesCS3B01G430000 chr3D 93.015 272 13 2 5453 5719 125779331 125779061 8.030000e-105 392.0
14 TraesCS3B01G430000 chr3D 80.645 248 44 4 430 674 79555400 79555154 1.130000e-43 189.0
15 TraesCS3B01G430000 chr3D 80.000 270 42 8 454 721 171124541 171124282 1.130000e-43 189.0
16 TraesCS3B01G430000 chr3D 78.799 283 50 9 430 709 26154721 26154996 1.890000e-41 182.0
17 TraesCS3B01G430000 chr1B 98.132 1392 26 0 5446 6837 645550302 645548911 0.000000e+00 2427.0
18 TraesCS3B01G430000 chr1B 81.200 250 43 4 428 674 328965117 328964869 1.880000e-46 198.0
19 TraesCS3B01G430000 chr2B 97.983 1388 28 0 5450 6837 57883186 57884573 0.000000e+00 2409.0
20 TraesCS3B01G430000 chr4B 97.700 1087 24 1 5751 6837 5701546 5700461 0.000000e+00 1868.0
21 TraesCS3B01G430000 chr7B 97.650 1064 24 1 5775 6838 197002087 197001025 0.000000e+00 1825.0
22 TraesCS3B01G430000 chr7B 78.512 121 15 6 590 709 115567394 115567504 1.540000e-07 69.4
23 TraesCS3B01G430000 chr2A 97.561 1066 24 2 5775 6839 52543875 52544939 0.000000e+00 1823.0
24 TraesCS3B01G430000 chr2A 94.081 1132 60 4 5710 6836 765660005 765661134 0.000000e+00 1712.0
25 TraesCS3B01G430000 chr2A 97.059 306 8 1 5459 5764 675098980 675099284 1.640000e-141 514.0
26 TraesCS3B01G430000 chr2A 83.673 245 35 5 432 674 755249883 755250124 8.620000e-55 226.0
27 TraesCS3B01G430000 chr2A 82.377 244 41 2 426 667 628728247 628728004 2.410000e-50 211.0
28 TraesCS3B01G430000 chr7D 94.894 1136 48 7 5710 6839 30393076 30391945 0.000000e+00 1768.0
29 TraesCS3B01G430000 chr7D 94.718 1136 54 5 5710 6839 69481044 69482179 0.000000e+00 1760.0
30 TraesCS3B01G430000 chr7D 94.139 273 10 2 5452 5719 578502026 578501755 2.220000e-110 411.0
31 TraesCS3B01G430000 chr7D 93.382 272 12 2 5453 5719 14630143 14630413 1.730000e-106 398.0
32 TraesCS3B01G430000 chr7D 92.469 239 16 2 4348 4586 33075317 33075553 2.950000e-89 340.0
33 TraesCS3B01G430000 chr7D 78.700 277 49 4 446 721 634259077 634258810 8.800000e-40 176.0
34 TraesCS3B01G430000 chrUn 93.773 273 11 2 5452 5719 15752793 15752522 1.030000e-108 405.0
35 TraesCS3B01G430000 chrUn 93.773 273 11 2 5452 5719 405321100 405320829 1.030000e-108 405.0
36 TraesCS3B01G430000 chrUn 93.358 271 12 2 5454 5719 15595765 15596034 6.210000e-106 396.0
37 TraesCS3B01G430000 chrUn 78.689 244 49 3 433 674 86899221 86899463 8.860000e-35 159.0
38 TraesCS3B01G430000 chrUn 80.682 176 31 3 501 674 301194555 301194729 5.370000e-27 134.0
39 TraesCS3B01G430000 chrUn 80.682 176 31 3 501 674 414086168 414085994 5.370000e-27 134.0
40 TraesCS3B01G430000 chrUn 76.923 247 48 6 429 674 8100757 8100519 1.930000e-26 132.0
41 TraesCS3B01G430000 chrUn 79.470 151 27 3 517 665 13888603 13888751 4.210000e-18 104.0
42 TraesCS3B01G430000 chr6B 83.468 248 38 3 429 674 40071425 40071671 2.400000e-55 228.0
43 TraesCS3B01G430000 chr5A 82.996 247 40 2 430 674 559787339 559787585 1.110000e-53 222.0
44 TraesCS3B01G430000 chr5A 81.855 248 41 4 430 674 291265938 291265692 1.120000e-48 206.0
45 TraesCS3B01G430000 chr5A 80.859 256 39 8 425 674 299295107 299294856 8.740000e-45 193.0
46 TraesCS3B01G430000 chr7A 82.591 247 40 3 430 674 593072833 593072588 1.860000e-51 215.0
47 TraesCS3B01G430000 chr7A 81.746 252 43 3 425 674 696986076 696986326 3.120000e-49 207.0
48 TraesCS3B01G430000 chr6A 82.186 247 42 2 430 674 46549159 46548913 2.410000e-50 211.0
49 TraesCS3B01G430000 chr6D 81.781 247 42 3 430 674 454889536 454889291 4.040000e-48 204.0
50 TraesCS3B01G430000 chr6D 81.377 247 43 3 430 674 454923091 454922846 1.880000e-46 198.0
51 TraesCS3B01G430000 chr6D 80.632 253 46 3 424 674 109274317 109274066 8.740000e-45 193.0
52 TraesCS3B01G430000 chr6D 81.224 245 37 6 433 674 427111631 427111393 1.130000e-43 189.0
53 TraesCS3B01G430000 chr6D 79.268 246 49 2 425 668 271385642 271385397 4.090000e-38 171.0
54 TraesCS3B01G430000 chr6D 78.455 246 49 3 428 669 67871719 67871964 3.190000e-34 158.0
55 TraesCS3B01G430000 chr6D 76.016 246 49 9 428 667 246475020 246474779 1.500000e-22 119.0
56 TraesCS3B01G430000 chr2D 81.200 250 39 7 430 674 549864079 549864325 2.430000e-45 195.0
57 TraesCS3B01G430000 chr2D 79.239 289 46 9 423 709 553337193 553337469 1.130000e-43 189.0
58 TraesCS3B01G430000 chr2D 79.779 272 44 5 460 729 72155829 72155567 4.070000e-43 187.0
59 TraesCS3B01G430000 chr4A 80.723 249 46 2 428 674 631371719 631371471 8.740000e-45 193.0
60 TraesCS3B01G430000 chr1D 80.833 240 41 5 429 665 122767075 122767312 5.260000e-42 183.0
61 TraesCS3B01G430000 chr1D 79.004 281 46 7 432 709 429695992 429695722 6.800000e-41 180.0
62 TraesCS3B01G430000 chr1D 79.839 248 46 4 430 674 14667362 14667608 2.450000e-40 178.0
63 TraesCS3B01G430000 chr1D 87.586 145 17 1 531 674 306628923 306628779 5.300000e-37 167.0
64 TraesCS3B01G430000 chr1D 77.739 283 47 12 430 707 331562028 331561757 8.860000e-35 159.0
65 TraesCS3B01G430000 chr1D 80.788 203 34 4 460 661 477230137 477229939 4.120000e-33 154.0
66 TraesCS3B01G430000 chr1A 80.162 247 46 3 430 674 537047748 537047993 1.890000e-41 182.0
67 TraesCS3B01G430000 chr5D 78.486 251 42 8 432 674 230013365 230013119 4.120000e-33 154.0
68 TraesCS3B01G430000 chr4D 77.966 236 50 2 432 666 204703875 204704109 6.900000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G430000 chr3B 669431690 669440219 8529 True 7563.5 11459 100.0000 1 8530 2 chr3B.!!$R1 8529
1 TraesCS3B01G430000 chr3B 34684296 34685380 1084 False 1877.0 1877 97.8820 5751 6836 1 chr3B.!!$F1 1085
2 TraesCS3B01G430000 chr3A 645135663 645145390 9727 True 1764.8 4939 90.0516 1 8530 5 chr3A.!!$R1 8529
3 TraesCS3B01G430000 chr3D 507033336 507040310 6974 True 1848.2 4682 90.9622 1 8530 5 chr3D.!!$R4 8529
4 TraesCS3B01G430000 chr1B 645548911 645550302 1391 True 2427.0 2427 98.1320 5446 6837 1 chr1B.!!$R2 1391
5 TraesCS3B01G430000 chr2B 57883186 57884573 1387 False 2409.0 2409 97.9830 5450 6837 1 chr2B.!!$F1 1387
6 TraesCS3B01G430000 chr4B 5700461 5701546 1085 True 1868.0 1868 97.7000 5751 6837 1 chr4B.!!$R1 1086
7 TraesCS3B01G430000 chr7B 197001025 197002087 1062 True 1825.0 1825 97.6500 5775 6838 1 chr7B.!!$R1 1063
8 TraesCS3B01G430000 chr2A 52543875 52544939 1064 False 1823.0 1823 97.5610 5775 6839 1 chr2A.!!$F1 1064
9 TraesCS3B01G430000 chr2A 765660005 765661134 1129 False 1712.0 1712 94.0810 5710 6836 1 chr2A.!!$F4 1126
10 TraesCS3B01G430000 chr7D 30391945 30393076 1131 True 1768.0 1768 94.8940 5710 6839 1 chr7D.!!$R1 1129
11 TraesCS3B01G430000 chr7D 69481044 69482179 1135 False 1760.0 1760 94.7180 5710 6839 1 chr7D.!!$F3 1129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 3623 0.030195 TGGTATCCCAGCCCATCAGA 60.030 55.000 0.00 0.00 35.17 3.27 F
629 3768 0.109272 TGATGCGTCGGTTCAGTCTC 60.109 55.000 0.58 0.00 0.00 3.36 F
630 3769 0.171455 GATGCGTCGGTTCAGTCTCT 59.829 55.000 0.00 0.00 0.00 3.10 F
631 3770 0.171455 ATGCGTCGGTTCAGTCTCTC 59.829 55.000 0.00 0.00 0.00 3.20 F
1214 4423 0.182061 GATTGCTGATCCCTGCTCCA 59.818 55.000 0.00 0.00 37.99 3.86 F
1319 4534 0.309922 CGCTGCCTTCATGCTATTGG 59.690 55.000 0.00 0.00 0.00 3.16 F
1443 4659 0.320858 TTATGCGGTCGAGCCAAACA 60.321 50.000 9.39 2.94 36.97 2.83 F
1691 5087 0.623723 TGTACATGGGAAGGGAAGGC 59.376 55.000 0.00 0.00 0.00 4.35 F
3324 6737 0.393537 CACCCATCTGCCCTGACTTC 60.394 60.000 0.00 0.00 0.00 3.01 F
4786 8209 1.065199 TGTCCCTTGCAAGCTATCCTG 60.065 52.381 21.43 5.31 0.00 3.86 F
5993 9427 2.122989 TCCCCTATGACCGGCCTC 60.123 66.667 0.00 0.00 0.00 4.70 F
7270 10724 0.035915 TTGCCGCATAACTAGCACCA 60.036 50.000 0.00 0.00 34.37 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 5069 0.919710 AGCCTTCCCTTCCCATGTAC 59.080 55.000 0.00 0.0 0.00 2.90 R
1798 5194 1.069227 CCGAGAGAAAACAAAAGCGGG 60.069 52.381 0.00 0.0 34.29 6.13 R
2371 5771 1.398692 GCTCTCTCGTTCCTCCTCAT 58.601 55.000 0.00 0.0 0.00 2.90 R
2571 5983 1.627834 GCCCCCTCAATCTGGATAGAG 59.372 57.143 0.00 0.0 36.14 2.43 R
2724 6136 0.170561 CCGTCTAGGACACGTTCTGG 59.829 60.000 2.29 0.0 45.00 3.86 R
3136 6549 3.947612 AACTCAGATGAGGCATGGAAT 57.052 42.857 14.09 0.0 46.13 3.01 R
3324 6737 3.213206 TGCATAAGGCTGAATACCTGG 57.787 47.619 0.00 0.0 45.15 4.45 R
3568 6990 4.733405 CCAAGTTAAACGAGAACACTTTGC 59.267 41.667 0.00 0.0 0.00 3.68 R
5259 8690 0.249911 ACGACCTCCAAGTTGCAGAC 60.250 55.000 0.00 0.0 0.00 3.51 R
6853 10288 8.293867 CAGTACAAACTCGGGAATTTGAAATTA 58.706 33.333 9.31 0.0 38.82 1.40 R
7446 10900 0.252197 GATGCTTTAGGGTGTCGGGT 59.748 55.000 0.00 0.0 0.00 5.28 R
8221 11755 0.798776 GGTTGGCTGACATGAACTCG 59.201 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.257933 GCCAGAGCCAGACAAACG 58.742 61.111 0.00 0.00 0.00 3.60
25 26 2.328099 GCCAGAGCCAGACAAACGG 61.328 63.158 0.00 0.00 0.00 4.44
110 113 6.650989 TCGAATTTCGAAATGGTCGGTCCT 62.651 45.833 30.09 13.23 46.90 3.85
268 274 4.143009 GCAACGAAAACAAAAGCAAAAGGA 60.143 37.500 0.00 0.00 0.00 3.36
274 280 9.353999 ACGAAAACAAAAGCAAAAGGATATATC 57.646 29.630 3.96 3.96 0.00 1.63
381 2994 5.381757 AGATTTATTTATGCTAACGGCCCA 58.618 37.500 0.00 0.00 40.92 5.36
384 2997 1.088306 TTTATGCTAACGGCCCAACG 58.912 50.000 0.00 0.00 40.92 4.10
395 3008 1.334689 CGGCCCAACGAAGAAGAAAAC 60.335 52.381 0.00 0.00 35.47 2.43
416 3554 5.674933 ACAAGAAAAAGATTGACTCGACC 57.325 39.130 0.00 0.00 0.00 4.79
418 3556 4.351874 AGAAAAAGATTGACTCGACCCA 57.648 40.909 0.00 0.00 0.00 4.51
444 3582 1.070786 GGTGCGAACCAACCTCTGA 59.929 57.895 8.05 0.00 0.00 3.27
452 3590 4.002982 CGAACCAACCTCTGATTGAATGA 58.997 43.478 0.00 0.00 0.00 2.57
463 3601 6.813293 TCTGATTGAATGATTAGAGGGACA 57.187 37.500 0.00 0.00 0.00 4.02
464 3602 7.199167 TCTGATTGAATGATTAGAGGGACAA 57.801 36.000 0.00 0.00 0.00 3.18
479 3618 0.550914 GACAATGGTATCCCAGCCCA 59.449 55.000 0.00 0.00 46.15 5.36
484 3623 0.030195 TGGTATCCCAGCCCATCAGA 60.030 55.000 0.00 0.00 35.17 3.27
490 3629 0.549950 CCCAGCCCATCAGAGTTCAT 59.450 55.000 0.00 0.00 0.00 2.57
493 3632 2.619849 CCAGCCCATCAGAGTTCATGTT 60.620 50.000 0.00 0.00 0.00 2.71
494 3633 3.087031 CAGCCCATCAGAGTTCATGTTT 58.913 45.455 0.00 0.00 0.00 2.83
499 3638 5.357878 GCCCATCAGAGTTCATGTTTTGATA 59.642 40.000 0.00 0.00 33.34 2.15
503 3642 7.335171 CCATCAGAGTTCATGTTTTGATACTCA 59.665 37.037 0.00 0.00 40.79 3.41
540 3679 6.971527 TTTATTTCTGAAGTTTCCGCGATA 57.028 33.333 8.23 0.00 0.00 2.92
542 3681 1.904144 TCTGAAGTTTCCGCGATACG 58.096 50.000 8.23 0.00 43.15 3.06
601 3740 2.676076 GCCTACGGTGACTTCGTAAAA 58.324 47.619 0.00 0.00 41.62 1.52
614 3753 8.113062 GTGACTTCGTAAAATCTCAAGATGATG 58.887 37.037 0.00 0.00 34.49 3.07
615 3754 7.009568 ACTTCGTAAAATCTCAAGATGATGC 57.990 36.000 0.00 0.00 34.49 3.91
620 3759 2.145958 ATCTCAAGATGATGCGTCGG 57.854 50.000 0.58 0.00 32.68 4.79
623 3762 1.590238 CTCAAGATGATGCGTCGGTTC 59.410 52.381 0.58 0.00 0.00 3.62
625 3764 1.325640 CAAGATGATGCGTCGGTTCAG 59.674 52.381 0.58 0.00 0.00 3.02
626 3765 0.532573 AGATGATGCGTCGGTTCAGT 59.467 50.000 0.58 0.00 0.00 3.41
627 3766 0.924090 GATGATGCGTCGGTTCAGTC 59.076 55.000 0.58 0.00 0.00 3.51
628 3767 0.532573 ATGATGCGTCGGTTCAGTCT 59.467 50.000 0.58 0.00 0.00 3.24
629 3768 0.109272 TGATGCGTCGGTTCAGTCTC 60.109 55.000 0.58 0.00 0.00 3.36
630 3769 0.171455 GATGCGTCGGTTCAGTCTCT 59.829 55.000 0.00 0.00 0.00 3.10
631 3770 0.171455 ATGCGTCGGTTCAGTCTCTC 59.829 55.000 0.00 0.00 0.00 3.20
632 3771 1.512310 GCGTCGGTTCAGTCTCTCG 60.512 63.158 0.00 0.00 0.00 4.04
634 3773 0.516001 CGTCGGTTCAGTCTCTCGAA 59.484 55.000 0.00 0.00 0.00 3.71
635 3774 1.069432 CGTCGGTTCAGTCTCTCGAAA 60.069 52.381 0.00 0.00 0.00 3.46
639 3778 3.254903 TCGGTTCAGTCTCTCGAAAATGA 59.745 43.478 0.00 0.00 0.00 2.57
648 3787 5.835819 AGTCTCTCGAAAATGATCATAGGGA 59.164 40.000 9.04 4.72 0.00 4.20
650 3789 7.671819 AGTCTCTCGAAAATGATCATAGGGATA 59.328 37.037 9.04 0.00 36.00 2.59
651 3790 8.307483 GTCTCTCGAAAATGATCATAGGGATAA 58.693 37.037 9.04 0.00 36.00 1.75
659 3798 3.006859 TGATCATAGGGATAAGGTGTGCG 59.993 47.826 0.00 0.00 36.00 5.34
675 3814 1.348250 GCGTGTGTGCGTCCATATG 59.652 57.895 0.00 0.00 0.00 1.78
676 3815 1.081556 GCGTGTGTGCGTCCATATGA 61.082 55.000 3.65 0.00 0.00 2.15
677 3816 1.355005 CGTGTGTGCGTCCATATGAA 58.645 50.000 3.65 0.00 0.00 2.57
678 3817 1.729517 CGTGTGTGCGTCCATATGAAA 59.270 47.619 3.65 0.00 0.00 2.69
679 3818 2.351418 CGTGTGTGCGTCCATATGAAAT 59.649 45.455 3.65 0.00 0.00 2.17
680 3819 3.181511 CGTGTGTGCGTCCATATGAAATT 60.182 43.478 3.65 0.00 0.00 1.82
681 3820 4.033472 CGTGTGTGCGTCCATATGAAATTA 59.967 41.667 3.65 0.00 0.00 1.40
682 3821 5.277297 CGTGTGTGCGTCCATATGAAATTAT 60.277 40.000 3.65 0.00 0.00 1.28
683 3822 5.909054 GTGTGTGCGTCCATATGAAATTATG 59.091 40.000 3.65 0.00 0.00 1.90
711 3850 4.385748 AGTGTATGCGCGTATGTATGAATG 59.614 41.667 20.45 0.00 0.00 2.67
716 3855 3.242576 TGCGCGTATGTATGAATGTTTGG 60.243 43.478 8.43 0.00 0.00 3.28
721 3860 5.756347 GCGTATGTATGAATGTTTGGGTCTA 59.244 40.000 0.00 0.00 0.00 2.59
722 3861 6.073765 GCGTATGTATGAATGTTTGGGTCTAG 60.074 42.308 0.00 0.00 0.00 2.43
724 3863 7.709182 CGTATGTATGAATGTTTGGGTCTAGAA 59.291 37.037 0.00 0.00 0.00 2.10
758 3906 1.381872 TGTGGTTGGGTGGGTTTGG 60.382 57.895 0.00 0.00 0.00 3.28
767 3915 0.396556 GGTGGGTTTGGGTGAGTTGT 60.397 55.000 0.00 0.00 0.00 3.32
1101 4306 1.394227 GTCCGTCTAGACTGTCACTCG 59.606 57.143 20.34 4.83 33.79 4.18
1122 4327 2.107141 CTACCGGTGCTAGCAGCC 59.893 66.667 34.43 26.81 41.51 4.85
1214 4423 0.182061 GATTGCTGATCCCTGCTCCA 59.818 55.000 0.00 0.00 37.99 3.86
1315 4530 1.377072 TTGCGCTGCCTTCATGCTA 60.377 52.632 9.73 0.00 0.00 3.49
1319 4534 0.309922 CGCTGCCTTCATGCTATTGG 59.690 55.000 0.00 0.00 0.00 3.16
1339 4554 4.794169 TGGCGACTTATCTTTGAAAAAGC 58.206 39.130 0.00 0.00 0.00 3.51
1340 4555 4.277174 TGGCGACTTATCTTTGAAAAAGCA 59.723 37.500 0.00 0.00 0.00 3.91
1436 4652 6.712241 ATATCTGATTTTTATGCGGTCGAG 57.288 37.500 0.00 0.00 0.00 4.04
1443 4659 0.320858 TTATGCGGTCGAGCCAAACA 60.321 50.000 9.39 2.94 36.97 2.83
1468 4684 9.589461 CACCCTCTCCTCTAGTAAATTTATCTA 57.411 37.037 0.31 4.68 0.00 1.98
1510 4736 9.202273 TGGCAAAGTAATCAACAAATTGTAATC 57.798 29.630 0.00 0.00 37.11 1.75
1511 4737 8.372521 GGCAAAGTAATCAACAAATTGTAATCG 58.627 33.333 0.00 0.00 37.11 3.34
1523 4749 8.776680 ACAAATTGTAATCGTTTGACTACAAC 57.223 30.769 0.00 0.00 46.07 3.32
1524 4750 8.399425 ACAAATTGTAATCGTTTGACTACAACA 58.601 29.630 0.00 0.00 46.07 3.33
1525 4751 9.393249 CAAATTGTAATCGTTTGACTACAACAT 57.607 29.630 1.96 0.00 46.07 2.71
1572 4965 7.183839 TCAGGGAAATTTATCTTAGGAGTGGAA 59.816 37.037 0.00 0.00 0.00 3.53
1584 4977 1.200020 GGAGTGGAAAATCGGCAAGTG 59.800 52.381 0.00 0.00 0.00 3.16
1600 4996 3.505680 GCAAGTGGTTGTGAATGGACATA 59.494 43.478 0.00 0.00 35.92 2.29
1673 5069 5.108187 TGGAGATTGGAGAGGAAGAAATG 57.892 43.478 0.00 0.00 0.00 2.32
1678 5074 7.205515 AGATTGGAGAGGAAGAAATGTACAT 57.794 36.000 1.41 1.41 0.00 2.29
1691 5087 0.623723 TGTACATGGGAAGGGAAGGC 59.376 55.000 0.00 0.00 0.00 4.35
1722 5118 4.821532 ATGATCTTTTCCCCTATTGGCT 57.178 40.909 0.00 0.00 0.00 4.75
1728 5124 4.044065 TCTTTTCCCCTATTGGCTGAGAAA 59.956 41.667 0.00 0.00 0.00 2.52
1731 5127 1.566231 CCCCTATTGGCTGAGAAACCT 59.434 52.381 0.00 0.00 0.00 3.50
1734 5130 4.325030 CCCCTATTGGCTGAGAAACCTTAA 60.325 45.833 0.00 0.00 0.00 1.85
1735 5131 4.640647 CCCTATTGGCTGAGAAACCTTAAC 59.359 45.833 0.00 0.00 0.00 2.01
1744 5140 5.703130 GCTGAGAAACCTTAACTGAACTGAT 59.297 40.000 0.00 0.00 0.00 2.90
1771 5167 7.084268 AGTAGAGAAATGGATAGGGGATTTG 57.916 40.000 0.00 0.00 0.00 2.32
1791 5187 2.101750 TGCCATCCGTATGTTGTCGTAT 59.898 45.455 0.00 0.00 0.00 3.06
1798 5194 5.522456 TCCGTATGTTGTCGTATATGTTCC 58.478 41.667 0.00 0.00 0.00 3.62
1822 5218 3.058914 CGCTTTTGTTTTCTCTCGGACAT 60.059 43.478 0.00 0.00 0.00 3.06
1845 5241 2.545946 TGTCGAAACACGCATCATTTCA 59.454 40.909 0.00 0.00 42.26 2.69
1905 5301 2.288395 CCAGCCAAAAGACGAAGCAAAT 60.288 45.455 0.00 0.00 0.00 2.32
1917 5313 9.522804 AAAGACGAAGCAAATTATAACAAAACA 57.477 25.926 0.00 0.00 0.00 2.83
1968 5368 6.396829 ACAGAGCTAAAACAGAGCAAATTT 57.603 33.333 0.00 0.00 42.69 1.82
1969 5369 6.809869 ACAGAGCTAAAACAGAGCAAATTTT 58.190 32.000 0.00 0.00 42.69 1.82
1970 5370 6.698766 ACAGAGCTAAAACAGAGCAAATTTTG 59.301 34.615 4.72 4.72 42.69 2.44
1973 5373 7.013655 AGAGCTAAAACAGAGCAAATTTTGAGA 59.986 33.333 13.26 0.00 42.69 3.27
1975 5375 7.650903 AGCTAAAACAGAGCAAATTTTGAGAAG 59.349 33.333 13.26 2.59 42.69 2.85
1979 5379 8.776376 AAACAGAGCAAATTTTGAGAAGAAAA 57.224 26.923 13.26 0.00 0.00 2.29
2371 5771 3.330405 TGAGAAATGAATGTCCTCCACCA 59.670 43.478 0.00 0.00 0.00 4.17
2389 5789 1.680735 CCATGAGGAGGAACGAGAGAG 59.319 57.143 0.00 0.00 36.89 3.20
2535 5947 8.437575 TCCTTCCTTTTGTCTAAAACTAGATGT 58.562 33.333 0.00 0.00 32.62 3.06
2571 5983 3.832490 AGTAATGTTCTTGGCTTTTCCCC 59.168 43.478 0.00 0.00 0.00 4.81
2724 6136 8.746922 TGATAGTTGACATTGAAATGCTTTTC 57.253 30.769 16.10 16.10 41.39 2.29
2811 6224 8.803235 AGGTGTTATTATTGACATAGCTATCGA 58.197 33.333 2.34 0.00 0.00 3.59
2868 6281 6.475504 TCTTTGTCTTGCTTGAGATGGATTA 58.524 36.000 0.00 0.00 0.00 1.75
2896 6309 6.602803 TCCTTGATGCATATGTGTGTACAATT 59.397 34.615 0.00 0.00 40.84 2.32
3114 6527 1.434188 TCCCCCTCGATATGTGCATT 58.566 50.000 0.00 0.00 0.00 3.56
3195 6608 1.210478 GCAGATGGCTTAGGGACAGAA 59.790 52.381 0.00 0.00 35.79 3.02
3324 6737 0.393537 CACCCATCTGCCCTGACTTC 60.394 60.000 0.00 0.00 0.00 3.01
3422 6835 6.238759 GGCTTTCTGACAAGATTGTGTAAGTT 60.239 38.462 2.31 0.00 42.43 2.66
3438 6851 6.657117 TGTGTAAGTTAATGCAGGCATCTTAA 59.343 34.615 7.29 1.84 35.31 1.85
3439 6852 7.339212 TGTGTAAGTTAATGCAGGCATCTTAAT 59.661 33.333 7.29 0.00 35.31 1.40
3534 6954 8.807667 ACATTGCTTTATTTCAAAGTCTTCTG 57.192 30.769 0.00 0.00 0.00 3.02
3916 7338 5.693104 TCAGTTTGTTCGTAGTACCATTGTC 59.307 40.000 0.00 0.00 0.00 3.18
3964 7386 4.504340 GCTAAACAAGGTGGTCAAGTAGGA 60.504 45.833 0.00 0.00 0.00 2.94
4100 7522 9.549078 CTATTCAGGGAATACTTAAAAGTCTCC 57.451 37.037 12.43 12.43 40.37 3.71
4182 7605 6.588204 TCCGGTGTTTTAGTATAATGCTGAT 58.412 36.000 0.00 0.00 0.00 2.90
4199 7622 4.275936 TGCTGATGCATCTTCAGATTCATG 59.724 41.667 26.32 1.69 45.31 3.07
4333 7756 5.532779 GGGCGAATATCTTCCAAAATTCTCT 59.467 40.000 0.00 0.00 0.00 3.10
4413 7836 5.925506 ACATCAAGAATCATTGGCAATCA 57.074 34.783 10.36 0.00 0.00 2.57
4454 7877 8.186821 CACAAGAGATCCATTTTTATCAGGTTC 58.813 37.037 0.00 0.00 0.00 3.62
4504 7927 8.939201 TGATTCATCTATCAAAGACTTGTCTC 57.061 34.615 3.58 0.00 36.93 3.36
4514 7937 7.214467 TCAAAGACTTGTCTCTTTTGTTTGT 57.786 32.000 3.58 0.00 38.24 2.83
4530 7953 2.346285 GTTTGTAAAAACAAGCGCAGCG 60.346 45.455 11.50 11.50 45.25 5.18
4594 8017 1.072806 AGACAGCAGACATGGCAGAAA 59.927 47.619 0.00 0.00 0.00 2.52
4636 8059 3.497942 GGAAAAACAGCCCTTCTCCACTA 60.498 47.826 0.00 0.00 0.00 2.74
4654 8077 8.679725 TCTCCACTACCCATAGAGTCTATTTAT 58.320 37.037 10.09 1.58 32.23 1.40
4701 8124 6.667370 TGTAAATCAATATACGCATGCAAGG 58.333 36.000 19.57 3.77 0.00 3.61
4722 8145 3.565902 GGCAGAACTACTTTTCTTGCTGT 59.434 43.478 0.00 0.00 33.31 4.40
4733 8156 5.297029 ACTTTTCTTGCTGTAGTTTGGTCTC 59.703 40.000 0.00 0.00 0.00 3.36
4786 8209 1.065199 TGTCCCTTGCAAGCTATCCTG 60.065 52.381 21.43 5.31 0.00 3.86
4827 8251 5.649782 ATGCTGACACTTTATTTCCCTTG 57.350 39.130 0.00 0.00 0.00 3.61
4834 8258 3.193479 CACTTTATTTCCCTTGGGCAGAC 59.807 47.826 0.00 0.00 0.00 3.51
4877 8301 6.547510 AGCAATTGGTGAAAGAGTAAAGACTT 59.452 34.615 9.83 0.00 35.45 3.01
4901 8325 2.283298 CGCTGTCCATTCATGTAGCTT 58.717 47.619 0.00 0.00 0.00 3.74
4911 8335 5.295292 CCATTCATGTAGCTTCAACGATCTT 59.705 40.000 0.00 0.00 0.00 2.40
4971 8395 5.354513 GTCTGAGTGGCTTTTAATAGTTCCC 59.645 44.000 0.00 0.00 0.00 3.97
5066 8490 4.079787 TGGTAAGGCTTCCATGCTTCTAAT 60.080 41.667 1.30 0.00 0.00 1.73
5067 8491 4.889995 GGTAAGGCTTCCATGCTTCTAATT 59.110 41.667 1.30 0.00 0.00 1.40
5124 8548 7.066307 TCTAATACACACATGGCATATCTGT 57.934 36.000 0.00 4.07 0.00 3.41
5129 8553 4.332543 ACACACATGGCATATCTGTTTACG 59.667 41.667 0.00 0.00 0.00 3.18
5133 8557 6.257849 ACACATGGCATATCTGTTTACGTTAG 59.742 38.462 0.00 0.00 0.00 2.34
5137 8561 6.167685 TGGCATATCTGTTTACGTTAGTTGT 58.832 36.000 0.00 0.00 0.00 3.32
5139 8563 7.982919 TGGCATATCTGTTTACGTTAGTTGTAT 59.017 33.333 0.00 0.00 0.00 2.29
5276 8707 3.618690 ATAGTCTGCAACTTGGAGGTC 57.381 47.619 10.14 4.81 39.55 3.85
5349 8780 4.821805 GCAGCAAGCTATTTATTCCACCTA 59.178 41.667 0.00 0.00 41.15 3.08
5411 8842 6.926272 CCCTTCTTTATCTTCTCTTGGATACG 59.074 42.308 0.00 0.00 42.51 3.06
5412 8843 7.418025 CCCTTCTTTATCTTCTCTTGGATACGT 60.418 40.741 0.00 0.00 42.51 3.57
5413 8844 8.630917 CCTTCTTTATCTTCTCTTGGATACGTA 58.369 37.037 0.00 0.00 42.51 3.57
5422 8853 9.362539 TCTTCTCTTGGATACGTATTTTTGTAC 57.637 33.333 9.92 0.00 42.51 2.90
5440 8871 6.922247 TTGTACGAGATACAACTCTAGGAG 57.078 41.667 0.00 0.00 46.68 3.69
5441 8872 6.231258 TGTACGAGATACAACTCTAGGAGA 57.769 41.667 1.31 0.00 40.98 3.71
5442 8873 6.647229 TGTACGAGATACAACTCTAGGAGAA 58.353 40.000 1.31 0.00 40.98 2.87
5443 8874 7.281098 TGTACGAGATACAACTCTAGGAGAAT 58.719 38.462 1.31 0.00 40.98 2.40
5444 8875 8.427276 TGTACGAGATACAACTCTAGGAGAATA 58.573 37.037 1.31 0.00 40.98 1.75
5993 9427 2.122989 TCCCCTATGACCGGCCTC 60.123 66.667 0.00 0.00 0.00 4.70
6168 9602 4.974438 TCCCCTGGTCTGGGCGTT 62.974 66.667 7.34 0.00 45.78 4.84
6928 10363 6.676950 TGGCAAGATAAACACACTACAAATG 58.323 36.000 0.00 0.00 0.00 2.32
7085 10539 9.961264 TGTGATGTAATATTAAGTAACCAACCA 57.039 29.630 0.00 0.00 0.00 3.67
7270 10724 0.035915 TTGCCGCATAACTAGCACCA 60.036 50.000 0.00 0.00 34.37 4.17
7273 10727 0.588252 CCGCATAACTAGCACCATGC 59.412 55.000 7.87 7.87 45.46 4.06
7337 10791 0.746659 GTTGGCATTACAGGGATGGC 59.253 55.000 3.98 3.98 46.72 4.40
7343 10797 2.660258 ATTACAGGGATGGCGCCGAC 62.660 60.000 23.90 17.86 0.00 4.79
7371 10825 3.953612 TGGATACTTTGCATGGTCATTCC 59.046 43.478 0.00 0.00 37.61 3.01
7446 10900 3.071479 GTTGATTACAAGAACGGGCTCA 58.929 45.455 0.00 0.00 36.64 4.26
7481 10935 1.951895 GCATCAGCCATGTGGTTCTCA 60.952 52.381 0.35 0.00 37.57 3.27
7500 10954 4.261888 GCTTCTTGAACGGCGAGA 57.738 55.556 16.62 2.08 35.16 4.04
7531 10985 3.066760 AGCAAACCTGACACAAACTAAGC 59.933 43.478 0.00 0.00 0.00 3.09
7535 10989 1.073923 CCTGACACAAACTAAGCCCCT 59.926 52.381 0.00 0.00 0.00 4.79
7587 11041 6.112058 GGAGCCCTTTCTATCAATGCTATAG 58.888 44.000 0.00 0.00 0.00 1.31
7588 11042 6.296145 GGAGCCCTTTCTATCAATGCTATAGT 60.296 42.308 0.84 0.00 0.00 2.12
7591 11114 6.936900 GCCCTTTCTATCAATGCTATAGTTGA 59.063 38.462 7.92 7.92 38.57 3.18
7606 11135 6.907212 GCTATAGTTGATCCAACATTTGTTCG 59.093 38.462 11.73 0.00 45.66 3.95
7619 11148 7.410728 CCAACATTTGTTCGAATGAATGCTTAC 60.411 37.037 24.47 3.68 38.93 2.34
7627 11156 5.478407 TCGAATGAATGCTTACAGAGTCAA 58.522 37.500 0.00 0.00 0.00 3.18
7640 11169 1.834263 AGAGTCAACATCCCTACCAGC 59.166 52.381 0.00 0.00 0.00 4.85
7646 11175 2.684881 CAACATCCCTACCAGCATGTTC 59.315 50.000 0.00 0.00 37.36 3.18
7647 11176 2.200081 ACATCCCTACCAGCATGTTCT 58.800 47.619 0.00 0.00 0.00 3.01
7664 11193 3.153919 GTTCTGGGTTCATGCCAGTTAA 58.846 45.455 15.08 3.68 33.75 2.01
7667 11196 0.170339 GGGTTCATGCCAGTTAACGC 59.830 55.000 0.00 0.00 0.00 4.84
7696 11225 4.566759 TGCTGATAACTCGCACAATCTAAC 59.433 41.667 0.00 0.00 0.00 2.34
7697 11226 4.566759 GCTGATAACTCGCACAATCTAACA 59.433 41.667 0.00 0.00 0.00 2.41
7717 11246 2.627515 TGAACCCATGCTATCTCTGC 57.372 50.000 0.00 0.00 0.00 4.26
7723 11252 2.236644 CCCATGCTATCTCTGCTGCTAT 59.763 50.000 0.00 0.00 0.00 2.97
7727 11256 6.114089 CCATGCTATCTCTGCTGCTATATTT 58.886 40.000 0.00 0.00 0.00 1.40
7729 11258 7.201626 CCATGCTATCTCTGCTGCTATATTTTC 60.202 40.741 0.00 0.00 0.00 2.29
7742 11271 6.781138 TGCTATATTTTCGTTGATGTTGGTC 58.219 36.000 0.00 0.00 0.00 4.02
7747 11276 5.666969 TTTTCGTTGATGTTGGTCTAGTG 57.333 39.130 0.00 0.00 0.00 2.74
7752 11281 5.047306 TCGTTGATGTTGGTCTAGTGATTCT 60.047 40.000 0.00 0.00 0.00 2.40
7754 11283 4.507710 TGATGTTGGTCTAGTGATTCTGC 58.492 43.478 0.00 0.00 0.00 4.26
7760 11289 4.014406 TGGTCTAGTGATTCTGCGAGTTA 58.986 43.478 0.00 0.00 0.00 2.24
7762 11291 5.216648 GGTCTAGTGATTCTGCGAGTTATC 58.783 45.833 0.00 0.00 0.00 1.75
7767 11296 4.742167 AGTGATTCTGCGAGTTATCATTCG 59.258 41.667 0.00 0.00 39.69 3.34
7784 11313 1.471119 TCGTAGACCCCAGTAAGCAG 58.529 55.000 0.00 0.00 0.00 4.24
7792 11321 2.444010 ACCCCAGTAAGCAGTTACCAAA 59.556 45.455 0.00 0.00 39.65 3.28
7793 11322 3.075432 ACCCCAGTAAGCAGTTACCAAAT 59.925 43.478 0.00 0.00 39.65 2.32
7794 11323 3.694566 CCCCAGTAAGCAGTTACCAAATC 59.305 47.826 0.00 0.00 39.65 2.17
7801 11330 3.335579 AGCAGTTACCAAATCGGAAGTC 58.664 45.455 0.00 0.00 38.63 3.01
7802 11331 3.071479 GCAGTTACCAAATCGGAAGTCA 58.929 45.455 0.00 0.00 38.63 3.41
7813 11342 5.424121 AATCGGAAGTCAGTTTCTGTTTG 57.576 39.130 0.00 0.00 35.43 2.93
7814 11343 2.612212 TCGGAAGTCAGTTTCTGTTTGC 59.388 45.455 0.00 0.00 35.43 3.68
7815 11344 2.354510 CGGAAGTCAGTTTCTGTTTGCA 59.645 45.455 0.00 0.00 32.61 4.08
7816 11345 3.181501 CGGAAGTCAGTTTCTGTTTGCAA 60.182 43.478 0.00 0.00 32.61 4.08
7817 11346 4.105486 GGAAGTCAGTTTCTGTTTGCAAC 58.895 43.478 0.00 0.00 32.61 4.17
7818 11347 4.142381 GGAAGTCAGTTTCTGTTTGCAACT 60.142 41.667 0.00 0.00 32.54 3.16
7819 11348 4.361451 AGTCAGTTTCTGTTTGCAACTG 57.639 40.909 0.00 1.83 46.39 3.16
7868 11397 3.499737 GGCACTGATGTTCGCGGG 61.500 66.667 6.13 0.00 0.00 6.13
7873 11402 0.606604 ACTGATGTTCGCGGGTAGTT 59.393 50.000 6.13 0.00 0.00 2.24
7874 11403 1.278238 CTGATGTTCGCGGGTAGTTC 58.722 55.000 6.13 0.00 0.00 3.01
7888 11417 1.141053 GTAGTTCGGATGGCCATTCCT 59.859 52.381 21.84 12.97 35.26 3.36
7925 11454 4.342951 TGGGCTACATACAGTATACACCAC 59.657 45.833 5.50 0.00 30.93 4.16
7938 11467 1.416243 ACACCACGAGAGGTTTGGTA 58.584 50.000 0.00 0.00 41.93 3.25
7970 11499 0.608035 TTGGGGACATTCCGAAGCAC 60.608 55.000 0.00 0.00 42.32 4.40
7977 11506 2.905996 ATTCCGAAGCACCAGCCCA 61.906 57.895 0.00 0.00 43.56 5.36
8048 11578 5.335897 GCCATCTCACAGCAAGTAAATGAAA 60.336 40.000 0.00 0.00 0.00 2.69
8057 11587 8.998989 CACAGCAAGTAAATGAAACATTATACG 58.001 33.333 0.00 0.00 0.00 3.06
8059 11589 9.425893 CAGCAAGTAAATGAAACATTATACGAG 57.574 33.333 0.00 0.00 0.00 4.18
8060 11590 9.162764 AGCAAGTAAATGAAACATTATACGAGT 57.837 29.630 0.00 0.00 0.00 4.18
8061 11591 9.769093 GCAAGTAAATGAAACATTATACGAGTT 57.231 29.630 0.00 0.00 0.00 3.01
8068 11598 8.948853 ATGAAACATTATACGAGTTGTTGTTG 57.051 30.769 0.00 0.00 30.33 3.33
8069 11599 7.921787 TGAAACATTATACGAGTTGTTGTTGT 58.078 30.769 0.00 0.00 30.33 3.32
8070 11600 8.399425 TGAAACATTATACGAGTTGTTGTTGTT 58.601 29.630 0.00 0.00 30.33 2.83
8071 11601 8.555166 AAACATTATACGAGTTGTTGTTGTTG 57.445 30.769 0.00 0.00 30.33 3.33
8075 11605 1.191096 CGAGTTGTTGTTGTTGCTGC 58.809 50.000 0.00 0.00 0.00 5.25
8092 11622 2.093783 GCTGCTGTTGTTGTATCGTACC 59.906 50.000 0.00 0.00 0.00 3.34
8093 11623 3.322369 CTGCTGTTGTTGTATCGTACCA 58.678 45.455 0.00 0.00 0.00 3.25
8155 11688 3.572682 CAGATACACTTCTATACGGGCCA 59.427 47.826 4.39 0.00 0.00 5.36
8221 11755 9.220767 CCAGAGTTCCCTGCTAATAAATTATAC 57.779 37.037 0.00 0.00 32.97 1.47
8339 11882 1.213926 CCCTCCTAGGAAGCAATTGCT 59.786 52.381 27.21 27.21 42.67 3.91
8352 11895 2.167075 GCAATTGCTAGCCACCAGAAAT 59.833 45.455 23.21 0.00 38.21 2.17
8355 11898 3.940209 TTGCTAGCCACCAGAAATTTG 57.060 42.857 13.29 0.00 0.00 2.32
8356 11899 2.875296 TGCTAGCCACCAGAAATTTGT 58.125 42.857 13.29 0.00 0.00 2.83
8415 11962 0.246635 CTGACAGGTTAGACCCACCG 59.753 60.000 0.00 0.00 39.75 4.94
8417 11964 0.531200 GACAGGTTAGACCCACCGAG 59.469 60.000 0.00 0.00 39.75 4.63
8436 11988 3.625764 CGAGAACCACTTTGAACTTTGGA 59.374 43.478 0.00 0.00 33.02 3.53
8449 12002 5.384336 TGAACTTTGGATGATTGGTGAAGA 58.616 37.500 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.030562 CCGTCCGTTTGTCTGGCT 59.969 61.111 0.00 0.00 0.00 4.75
25 26 4.814294 AATCTGCCGCCGTCCGTC 62.814 66.667 0.00 0.00 34.38 4.79
64 65 6.364165 CGAACAGCACTTGAATCAAATCAAAT 59.636 34.615 0.00 0.00 38.75 2.32
243 249 3.713889 TTGCTTTTGTTTTCGTTGCAC 57.286 38.095 0.00 0.00 0.00 4.57
268 274 7.327064 AGATGCTCCAAGGAAACAGATATAT 57.673 36.000 0.00 0.00 0.00 0.86
381 2994 9.639601 AATCTTTTTCTTGTTTTCTTCTTCGTT 57.360 25.926 0.00 0.00 0.00 3.85
395 3008 4.515191 TGGGTCGAGTCAATCTTTTTCTTG 59.485 41.667 0.00 0.00 0.00 3.02
416 3554 1.021390 GGTTCGCACCACTCTCATGG 61.021 60.000 0.00 0.00 43.61 3.66
444 3582 6.676558 ACCATTGTCCCTCTAATCATTCAAT 58.323 36.000 0.00 0.00 0.00 2.57
525 3664 2.365823 GCGTATCGCGGAAACTTCA 58.634 52.632 6.13 0.00 44.55 3.02
540 3679 4.130118 ACATCTTCTTTCACTGAAAGCGT 58.870 39.130 22.09 12.73 45.86 5.07
542 3681 6.017605 TGAGAACATCTTCTTTCACTGAAAGC 60.018 38.462 22.09 9.17 45.86 3.51
543 3682 8.097078 ATGAGAACATCTTCTTTCACTGAAAG 57.903 34.615 21.21 21.21 40.14 2.62
545 3684 7.664082 GATGAGAACATCTTCTTTCACTGAA 57.336 36.000 0.00 0.00 46.47 3.02
554 3693 8.006665 TCTCGTTGTCGATGAGAACATCTTCT 62.007 42.308 9.27 0.00 45.24 2.85
555 3694 5.900202 TCTCGTTGTCGATGAGAACATCTTC 60.900 44.000 9.27 0.00 45.24 2.87
556 3695 4.082733 TCTCGTTGTCGATGAGAACATCTT 60.083 41.667 9.27 0.00 45.24 2.40
557 3696 3.440522 TCTCGTTGTCGATGAGAACATCT 59.559 43.478 9.27 0.00 45.24 2.90
558 3697 3.759418 TCTCGTTGTCGATGAGAACATC 58.241 45.455 9.27 0.00 45.24 3.06
559 3698 3.850122 TCTCGTTGTCGATGAGAACAT 57.150 42.857 9.27 0.00 45.24 2.71
601 3740 1.410517 ACCGACGCATCATCTTGAGAT 59.589 47.619 0.00 0.00 34.56 2.75
614 3753 1.512310 CGAGAGACTGAACCGACGC 60.512 63.158 0.00 0.00 0.00 5.19
615 3754 0.516001 TTCGAGAGACTGAACCGACG 59.484 55.000 0.00 0.00 41.84 5.12
620 3759 6.900568 ATGATCATTTTCGAGAGACTGAAC 57.099 37.500 1.18 0.00 41.84 3.18
623 3762 5.925397 CCCTATGATCATTTTCGAGAGACTG 59.075 44.000 14.65 0.00 41.84 3.51
625 3764 6.090483 TCCCTATGATCATTTTCGAGAGAC 57.910 41.667 14.65 0.00 41.84 3.36
626 3765 6.924913 ATCCCTATGATCATTTTCGAGAGA 57.075 37.500 14.65 1.17 39.20 3.10
627 3766 7.763528 CCTTATCCCTATGATCATTTTCGAGAG 59.236 40.741 14.65 2.92 34.76 3.20
628 3767 7.235606 ACCTTATCCCTATGATCATTTTCGAGA 59.764 37.037 14.65 3.55 34.76 4.04
629 3768 7.332926 CACCTTATCCCTATGATCATTTTCGAG 59.667 40.741 14.65 4.44 34.76 4.04
630 3769 7.161404 CACCTTATCCCTATGATCATTTTCGA 58.839 38.462 14.65 5.32 34.76 3.71
631 3770 6.936900 ACACCTTATCCCTATGATCATTTTCG 59.063 38.462 14.65 0.00 34.76 3.46
632 3771 7.308830 GCACACCTTATCCCTATGATCATTTTC 60.309 40.741 14.65 0.00 34.76 2.29
634 3773 6.006449 GCACACCTTATCCCTATGATCATTT 58.994 40.000 14.65 0.00 34.76 2.32
635 3774 5.564550 GCACACCTTATCCCTATGATCATT 58.435 41.667 14.65 0.00 34.76 2.57
639 3778 2.972713 ACGCACACCTTATCCCTATGAT 59.027 45.455 0.00 0.00 37.49 2.45
648 3787 1.565156 CGCACACACGCACACCTTAT 61.565 55.000 0.00 0.00 0.00 1.73
650 3789 3.572539 CGCACACACGCACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
651 3790 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
659 3798 4.355543 AATTTCATATGGACGCACACAC 57.644 40.909 2.13 0.00 0.00 3.82
675 3814 5.385617 GCGCATACACTCATCCATAATTTC 58.614 41.667 0.30 0.00 0.00 2.17
676 3815 4.083855 CGCGCATACACTCATCCATAATTT 60.084 41.667 8.75 0.00 0.00 1.82
677 3816 3.433274 CGCGCATACACTCATCCATAATT 59.567 43.478 8.75 0.00 0.00 1.40
678 3817 2.995939 CGCGCATACACTCATCCATAAT 59.004 45.455 8.75 0.00 0.00 1.28
679 3818 2.223947 ACGCGCATACACTCATCCATAA 60.224 45.455 5.73 0.00 0.00 1.90
680 3819 1.339929 ACGCGCATACACTCATCCATA 59.660 47.619 5.73 0.00 0.00 2.74
681 3820 0.104855 ACGCGCATACACTCATCCAT 59.895 50.000 5.73 0.00 0.00 3.41
682 3821 0.741915 TACGCGCATACACTCATCCA 59.258 50.000 5.73 0.00 0.00 3.41
683 3822 1.721389 CATACGCGCATACACTCATCC 59.279 52.381 5.73 0.00 0.00 3.51
735 3883 1.528309 CCCACCCAACCACACTCAC 60.528 63.158 0.00 0.00 0.00 3.51
740 3888 1.381872 CCAAACCCACCCAACCACA 60.382 57.895 0.00 0.00 0.00 4.17
747 3895 1.112916 CAACTCACCCAAACCCACCC 61.113 60.000 0.00 0.00 0.00 4.61
758 3906 4.015872 TGGATCTGGTTTACAACTCACC 57.984 45.455 0.00 0.00 0.00 4.02
767 3915 1.074084 TGCCGGTTTGGATCTGGTTTA 59.926 47.619 1.90 0.00 42.00 2.01
1101 4306 0.382515 CTGCTAGCACCGGTAGAGTC 59.617 60.000 14.93 0.00 35.90 3.36
1122 4327 1.876156 CCTAAGGTAGTACCCGTAGCG 59.124 57.143 16.05 8.22 39.75 4.26
1135 4340 2.225017 CCACCATTCACCAACCTAAGGT 60.225 50.000 0.00 0.00 40.85 3.50
1315 4530 5.863935 GCTTTTTCAAAGATAAGTCGCCAAT 59.136 36.000 0.25 0.00 0.00 3.16
1319 4534 6.747659 TTTGCTTTTTCAAAGATAAGTCGC 57.252 33.333 0.25 0.00 32.69 5.19
1339 4554 3.117589 CGGTCACCGTCCTACTTTG 57.882 57.895 8.54 0.00 42.73 2.77
1350 4565 2.737376 GGTCGTTGCTCGGTCACC 60.737 66.667 0.00 0.00 40.32 4.02
1436 4652 1.208293 CTAGAGGAGAGGGTGTTTGGC 59.792 57.143 0.00 0.00 0.00 4.52
1484 4703 9.202273 GATTACAATTTGTTGATTACTTTGCCA 57.798 29.630 7.45 0.00 0.00 4.92
1510 4736 7.276878 TGTCCATATGTATGTTGTAGTCAAACG 59.723 37.037 1.24 0.00 35.20 3.60
1511 4737 8.487313 TGTCCATATGTATGTTGTAGTCAAAC 57.513 34.615 1.24 0.00 35.20 2.93
1525 4751 9.035890 CCCTGATATTAAGTCTGTCCATATGTA 57.964 37.037 1.24 0.00 0.00 2.29
1526 4752 7.734865 TCCCTGATATTAAGTCTGTCCATATGT 59.265 37.037 1.24 0.00 0.00 2.29
1527 4753 8.138928 TCCCTGATATTAAGTCTGTCCATATG 57.861 38.462 0.00 0.00 0.00 1.78
1567 4960 0.958822 ACCACTTGCCGATTTTCCAC 59.041 50.000 0.00 0.00 0.00 4.02
1572 4965 1.686355 TCACAACCACTTGCCGATTT 58.314 45.000 0.00 0.00 0.00 2.17
1584 4977 5.730550 TGACTACTATGTCCATTCACAACC 58.269 41.667 0.00 0.00 36.21 3.77
1600 4996 7.767261 CAAATAGTGCTCTACTTCTGACTACT 58.233 38.462 0.00 0.00 40.89 2.57
1627 5023 3.261951 CGCATACCGCCTCCGTTG 61.262 66.667 0.00 0.00 37.30 4.10
1673 5069 0.919710 AGCCTTCCCTTCCCATGTAC 59.080 55.000 0.00 0.00 0.00 2.90
1678 5074 1.463214 TGTCAGCCTTCCCTTCCCA 60.463 57.895 0.00 0.00 0.00 4.37
1713 5109 5.355350 CAGTTAAGGTTTCTCAGCCAATAGG 59.645 44.000 0.00 0.00 38.23 2.57
1717 5113 4.431416 TCAGTTAAGGTTTCTCAGCCAA 57.569 40.909 0.00 0.00 0.00 4.52
1722 5118 9.273016 CTTTATCAGTTCAGTTAAGGTTTCTCA 57.727 33.333 0.00 0.00 0.00 3.27
1728 5124 9.310449 TCTCTACTTTATCAGTTCAGTTAAGGT 57.690 33.333 0.00 0.00 36.88 3.50
1734 5130 8.816894 TCCATTTCTCTACTTTATCAGTTCAGT 58.183 33.333 0.00 0.00 36.88 3.41
1735 5131 9.829507 ATCCATTTCTCTACTTTATCAGTTCAG 57.170 33.333 0.00 0.00 36.88 3.02
1744 5140 8.814448 AATCCCCTATCCATTTCTCTACTTTA 57.186 34.615 0.00 0.00 0.00 1.85
1756 5152 2.043526 GGATGGCAAATCCCCTATCCAT 59.956 50.000 6.42 0.00 37.05 3.41
1771 5167 2.212869 TACGACAACATACGGATGGC 57.787 50.000 13.36 0.00 37.39 4.40
1791 5187 3.892588 AGAAAACAAAAGCGGGGAACATA 59.107 39.130 0.00 0.00 0.00 2.29
1798 5194 1.069227 CCGAGAGAAAACAAAAGCGGG 60.069 52.381 0.00 0.00 34.29 6.13
1822 5218 1.507562 ATGATGCGTGTTTCGACACA 58.492 45.000 0.00 0.00 42.86 3.72
1835 5231 9.374960 GTCGTTTCTTCTAATATGAAATGATGC 57.625 33.333 11.17 0.00 43.53 3.91
2340 5740 5.882557 GGACATTCATTTCTCAGCTTTCCTA 59.117 40.000 0.00 0.00 0.00 2.94
2371 5771 1.398692 GCTCTCTCGTTCCTCCTCAT 58.601 55.000 0.00 0.00 0.00 2.90
2382 5782 5.757320 ACAAAATTCTATGATGGCTCTCTCG 59.243 40.000 0.00 0.00 0.00 4.04
2389 5789 4.160252 ACCCACACAAAATTCTATGATGGC 59.840 41.667 0.00 0.00 0.00 4.40
2535 5947 9.317936 CAAGAACATTACTTCACAGCTATGATA 57.682 33.333 0.00 0.00 0.00 2.15
2539 5951 5.355350 GCCAAGAACATTACTTCACAGCTAT 59.645 40.000 0.00 0.00 0.00 2.97
2544 5956 6.460953 GGAAAAGCCAAGAACATTACTTCACA 60.461 38.462 0.00 0.00 36.34 3.58
2571 5983 1.627834 GCCCCCTCAATCTGGATAGAG 59.372 57.143 0.00 0.00 36.14 2.43
2724 6136 0.170561 CCGTCTAGGACACGTTCTGG 59.829 60.000 2.29 0.00 45.00 3.86
2868 6281 5.045012 ACACACATATGCATCAAGGAGAT 57.955 39.130 0.19 0.00 37.48 2.75
2896 6309 7.817910 TTAGGGATCTAGGAAACAAGGTAAA 57.182 36.000 0.00 0.00 0.00 2.01
3136 6549 3.947612 AACTCAGATGAGGCATGGAAT 57.052 42.857 14.09 0.00 46.13 3.01
3143 6556 8.821894 CAGTAAACTTATAAACTCAGATGAGGC 58.178 37.037 14.09 0.00 46.13 4.70
3324 6737 3.213206 TGCATAAGGCTGAATACCTGG 57.787 47.619 0.00 0.00 45.15 4.45
3404 6817 7.308529 CCTGCATTAACTTACACAATCTTGTCA 60.309 37.037 0.00 0.00 39.91 3.58
3422 6835 9.801873 GAGTTTAAAATTAAGATGCCTGCATTA 57.198 29.630 6.02 0.00 36.70 1.90
3470 6883 5.219633 CCTTGTAGTATTTTGTGTTGGCAC 58.780 41.667 0.00 0.00 45.44 5.01
3491 6904 5.105756 GCAATGTTCTTAGGTAAACATGCCT 60.106 40.000 1.84 0.00 43.45 4.75
3566 6988 5.156804 AGTTAAACGAGAACACTTTGCTG 57.843 39.130 0.00 0.00 0.00 4.41
3567 6989 5.448632 CCAAGTTAAACGAGAACACTTTGCT 60.449 40.000 0.00 0.00 0.00 3.91
3568 6990 4.733405 CCAAGTTAAACGAGAACACTTTGC 59.267 41.667 0.00 0.00 0.00 3.68
3740 7162 2.695147 CCAGGAGCAAATATTCCAACCC 59.305 50.000 0.00 0.00 35.88 4.11
3946 7368 4.141251 ACAAATCCTACTTGACCACCTTGT 60.141 41.667 0.00 0.00 0.00 3.16
3964 7386 5.811613 CGCCCATTCACAATCAATAACAAAT 59.188 36.000 0.00 0.00 0.00 2.32
3996 7418 2.105821 TGGTCTTCCATTTTGTCCGACT 59.894 45.455 0.00 0.00 39.03 4.18
4333 7756 4.893608 TCATCAATTCACGGTCTTTCTCA 58.106 39.130 0.00 0.00 0.00 3.27
4394 7817 4.380841 GCTGATTGCCAATGATTCTTGA 57.619 40.909 0.00 0.00 35.15 3.02
4413 7836 2.203294 GTGGTTGTGGGTTCGGCT 60.203 61.111 0.00 0.00 0.00 5.52
4417 7840 2.341846 TCTCTTGTGGTTGTGGGTTC 57.658 50.000 0.00 0.00 0.00 3.62
4454 7877 6.464222 TGGTACCTGTTCTCTCTATTTGTTG 58.536 40.000 14.36 0.00 0.00 3.33
4469 7892 7.379059 TTGATAGATGAATCATGGTACCTGT 57.621 36.000 14.36 0.00 35.84 4.00
4514 7937 0.658368 TGACGCTGCGCTTGTTTTTA 59.342 45.000 23.51 0.00 0.00 1.52
4530 7953 1.093159 CCCTGCATCTTTCAGCTGAC 58.907 55.000 18.03 4.16 32.24 3.51
4594 8017 8.593945 TTTTCCTAATCAGCAAGGTGAAATAT 57.406 30.769 6.02 0.00 34.30 1.28
4636 8059 8.461033 AGGAAGAGATAAATAGACTCTATGGGT 58.539 37.037 0.00 0.00 39.63 4.51
4654 8077 7.922382 ACAATTCTCCAAGAATAAGGAAGAGA 58.078 34.615 2.79 0.00 43.67 3.10
4701 8124 4.820284 ACAGCAAGAAAAGTAGTTCTGC 57.180 40.909 0.00 0.00 37.90 4.26
4722 8145 4.570772 GCGCAGAATATTGAGACCAAACTA 59.429 41.667 0.30 0.00 35.67 2.24
4727 8150 1.475034 GGGCGCAGAATATTGAGACCA 60.475 52.381 10.83 0.00 44.62 4.02
4733 8156 8.929746 CATATATATAGTGGGCGCAGAATATTG 58.070 37.037 10.83 10.10 0.00 1.90
4786 8209 7.063544 GTCAGCATTACGATATTAATCTGGGAC 59.936 40.741 0.00 0.00 0.00 4.46
4827 8251 1.383523 GCTACTCCATTTGTCTGCCC 58.616 55.000 0.00 0.00 0.00 5.36
4834 8258 1.398390 GCTTCACCGCTACTCCATTTG 59.602 52.381 0.00 0.00 0.00 2.32
4877 8301 0.324614 ACATGAATGGACAGCGGTCA 59.675 50.000 18.81 5.54 46.17 4.02
4901 8325 8.258007 AGATGAAATGTTAGGTAAGATCGTTGA 58.742 33.333 0.00 0.00 0.00 3.18
4971 8395 4.013728 TGATTGTTTTCCGAATACCCCAG 58.986 43.478 0.01 0.00 0.00 4.45
5124 8548 7.388224 TGCAGGAAATGATACAACTAACGTAAA 59.612 33.333 0.00 0.00 0.00 2.01
5129 8553 8.840321 ACATATGCAGGAAATGATACAACTAAC 58.160 33.333 1.58 0.00 0.00 2.34
5133 8557 6.919662 CCAACATATGCAGGAAATGATACAAC 59.080 38.462 1.58 0.00 0.00 3.32
5137 8561 6.832900 TCAACCAACATATGCAGGAAATGATA 59.167 34.615 18.11 1.16 0.00 2.15
5139 8563 5.015515 TCAACCAACATATGCAGGAAATGA 58.984 37.500 18.11 15.05 0.00 2.57
5251 8682 5.045578 ACCTCCAAGTTGCAGACTATAACAT 60.046 40.000 0.00 0.00 37.72 2.71
5259 8690 0.249911 ACGACCTCCAAGTTGCAGAC 60.250 55.000 0.00 0.00 0.00 3.51
5261 8692 0.588252 CAACGACCTCCAAGTTGCAG 59.412 55.000 0.00 0.00 38.73 4.41
5276 8707 2.139917 TGCAACTAAGGCAGTACAACG 58.860 47.619 0.00 0.00 36.04 4.10
5349 8780 5.468540 TCCATAATTAGACTAGCACGCAT 57.531 39.130 0.00 0.00 0.00 4.73
5418 8849 6.231258 TCTCCTAGAGTTGTATCTCGTACA 57.769 41.667 0.00 0.00 41.46 2.90
5419 8850 7.733402 ATTCTCCTAGAGTTGTATCTCGTAC 57.267 40.000 0.00 0.00 39.21 3.67
5421 8852 8.927675 AATATTCTCCTAGAGTTGTATCTCGT 57.072 34.615 0.00 0.00 39.21 4.18
5426 8857 9.536510 GGAGGTAATATTCTCCTAGAGTTGTAT 57.463 37.037 13.54 0.00 44.54 2.29
5427 8858 7.949006 GGGAGGTAATATTCTCCTAGAGTTGTA 59.051 40.741 18.10 0.00 46.51 2.41
5428 8859 6.783482 GGGAGGTAATATTCTCCTAGAGTTGT 59.217 42.308 18.10 0.00 46.51 3.32
5429 8860 6.211785 GGGGAGGTAATATTCTCCTAGAGTTG 59.788 46.154 18.10 0.00 46.51 3.16
5430 8861 6.324544 GGGGAGGTAATATTCTCCTAGAGTT 58.675 44.000 18.10 0.00 46.51 3.01
5431 8862 5.222589 GGGGGAGGTAATATTCTCCTAGAGT 60.223 48.000 18.10 0.00 46.51 3.24
5432 8863 5.274015 GGGGGAGGTAATATTCTCCTAGAG 58.726 50.000 18.10 0.00 46.51 2.43
5433 8864 4.264262 CGGGGGAGGTAATATTCTCCTAGA 60.264 50.000 18.10 0.00 46.51 2.43
5434 8865 4.024670 CGGGGGAGGTAATATTCTCCTAG 58.975 52.174 18.10 9.42 46.51 3.02
5435 8866 3.820486 GCGGGGGAGGTAATATTCTCCTA 60.820 52.174 18.10 0.00 46.51 2.94
5436 8867 2.903926 CGGGGGAGGTAATATTCTCCT 58.096 52.381 18.10 14.58 46.51 3.69
5437 8868 1.278413 GCGGGGGAGGTAATATTCTCC 59.722 57.143 12.73 12.73 46.57 3.71
5438 8869 1.067071 CGCGGGGGAGGTAATATTCTC 60.067 57.143 0.00 0.00 0.00 2.87
5439 8870 0.974383 CGCGGGGGAGGTAATATTCT 59.026 55.000 0.00 0.00 0.00 2.40
5440 8871 0.683412 ACGCGGGGGAGGTAATATTC 59.317 55.000 12.47 0.00 0.00 1.75
5441 8872 0.683412 GACGCGGGGGAGGTAATATT 59.317 55.000 12.47 0.00 0.00 1.28
5442 8873 1.530013 CGACGCGGGGGAGGTAATAT 61.530 60.000 12.47 0.00 0.00 1.28
5443 8874 2.195567 CGACGCGGGGGAGGTAATA 61.196 63.158 12.47 0.00 0.00 0.98
5444 8875 3.534056 CGACGCGGGGGAGGTAAT 61.534 66.667 12.47 0.00 0.00 1.89
5487 8918 1.761271 GCGCTAGGGTTAGGGAGGT 60.761 63.158 8.77 0.00 41.12 3.85
5560 8991 3.989787 TCAGCCGCACGAGCTTCA 61.990 61.111 2.73 0.00 38.95 3.02
6853 10288 8.293867 CAGTACAAACTCGGGAATTTGAAATTA 58.706 33.333 9.31 0.00 38.82 1.40
6956 10391 7.436970 CGCATTTACATGTATACCTGTCAGTTA 59.563 37.037 15.92 0.00 32.28 2.24
6960 10395 5.908341 TCGCATTTACATGTATACCTGTCA 58.092 37.500 15.92 4.30 32.28 3.58
7085 10539 7.196637 ACATGAGAGCATCATCCATATACAT 57.803 36.000 0.00 0.00 46.01 2.29
7270 10724 3.067461 TGCTTTGGTCGTTTTAGTTGCAT 59.933 39.130 0.00 0.00 0.00 3.96
7273 10727 4.499040 CACTTGCTTTGGTCGTTTTAGTTG 59.501 41.667 0.00 0.00 0.00 3.16
7314 10768 2.489938 TCCCTGTAATGCCAACAGTC 57.510 50.000 8.75 0.00 42.30 3.51
7337 10791 2.100797 TATCCACGAACGTCGGCG 59.899 61.111 8.42 8.42 45.59 6.46
7343 10797 2.223021 CCATGCAAAGTATCCACGAACG 60.223 50.000 0.00 0.00 0.00 3.95
7371 10825 2.009774 CGCCCACTCAAAGTTATCCAG 58.990 52.381 0.00 0.00 0.00 3.86
7446 10900 0.252197 GATGCTTTAGGGTGTCGGGT 59.748 55.000 0.00 0.00 0.00 5.28
7500 10954 1.893808 CAGGTTTGCTGTCAGCGGT 60.894 57.895 19.68 0.00 46.26 5.68
7531 10985 0.967380 GCACCTTGGTGAATGAGGGG 60.967 60.000 22.52 0.00 37.03 4.79
7535 10989 5.304101 ACAATTTAAGCACCTTGGTGAATGA 59.696 36.000 22.52 5.04 0.00 2.57
7587 11041 6.148948 TCATTCGAACAAATGTTGGATCAAC 58.851 36.000 11.04 4.04 41.25 3.18
7588 11042 6.324561 TCATTCGAACAAATGTTGGATCAA 57.675 33.333 11.04 0.00 41.25 2.57
7591 11114 5.577945 GCATTCATTCGAACAAATGTTGGAT 59.422 36.000 24.24 7.98 41.25 3.41
7606 11135 6.486253 TGTTGACTCTGTAAGCATTCATTC 57.514 37.500 0.00 0.00 0.00 2.67
7619 11148 2.419297 GCTGGTAGGGATGTTGACTCTG 60.419 54.545 0.00 0.00 0.00 3.35
7640 11169 1.548081 TGGCATGAACCCAGAACATG 58.452 50.000 0.00 0.00 42.60 3.21
7647 11176 1.529226 CGTTAACTGGCATGAACCCA 58.471 50.000 3.71 0.00 0.00 4.51
7657 11186 4.147322 CAGCGCGGCGTTAACTGG 62.147 66.667 24.46 1.38 0.00 4.00
7664 11193 4.812476 TTATCAGCAGCGCGGCGT 62.812 61.111 26.29 18.21 39.27 5.68
7667 11196 2.580470 CGAGTTATCAGCAGCGCGG 61.580 63.158 8.83 2.11 0.00 6.46
7697 11226 2.709934 AGCAGAGATAGCATGGGTTCAT 59.290 45.455 0.00 0.00 0.00 2.57
7717 11246 6.785191 ACCAACATCAACGAAAATATAGCAG 58.215 36.000 0.00 0.00 0.00 4.24
7723 11252 7.156000 TCACTAGACCAACATCAACGAAAATA 58.844 34.615 0.00 0.00 0.00 1.40
7727 11256 4.594123 TCACTAGACCAACATCAACGAA 57.406 40.909 0.00 0.00 0.00 3.85
7729 11258 5.062683 CAGAATCACTAGACCAACATCAACG 59.937 44.000 0.00 0.00 0.00 4.10
7742 11271 6.087423 CGAATGATAACTCGCAGAATCACTAG 59.913 42.308 0.00 0.00 34.09 2.57
7747 11276 6.087028 GTCTACGAATGATAACTCGCAGAATC 59.913 42.308 0.00 0.00 38.74 2.52
7752 11281 3.243301 GGGTCTACGAATGATAACTCGCA 60.243 47.826 0.00 0.00 38.64 5.10
7754 11283 3.317149 TGGGGTCTACGAATGATAACTCG 59.683 47.826 0.00 0.00 40.87 4.18
7760 11289 3.069729 GCTTACTGGGGTCTACGAATGAT 59.930 47.826 0.00 0.00 0.00 2.45
7762 11291 2.167693 TGCTTACTGGGGTCTACGAATG 59.832 50.000 0.00 0.00 0.00 2.67
7767 11296 3.118847 GGTAACTGCTTACTGGGGTCTAC 60.119 52.174 0.00 0.00 33.83 2.59
7784 11313 5.469084 AGAAACTGACTTCCGATTTGGTAAC 59.531 40.000 0.00 0.00 39.52 2.50
7792 11321 3.251004 GCAAACAGAAACTGACTTCCGAT 59.749 43.478 5.76 0.00 35.18 4.18
7793 11322 2.612212 GCAAACAGAAACTGACTTCCGA 59.388 45.455 5.76 0.00 35.18 4.55
7794 11323 2.354510 TGCAAACAGAAACTGACTTCCG 59.645 45.455 5.76 0.00 35.18 4.30
7813 11342 2.780065 TTGTTGCATCAGTCAGTTGC 57.220 45.000 0.00 0.00 42.11 4.17
7814 11343 4.031418 TGTTTGTTGCATCAGTCAGTTG 57.969 40.909 0.00 0.00 0.00 3.16
7815 11344 4.924305 ATGTTTGTTGCATCAGTCAGTT 57.076 36.364 0.00 0.00 0.00 3.16
7816 11345 4.924305 AATGTTTGTTGCATCAGTCAGT 57.076 36.364 0.00 0.00 0.00 3.41
7817 11346 5.969741 CAAAATGTTTGTTGCATCAGTCAG 58.030 37.500 0.00 0.00 0.00 3.51
7818 11347 5.970140 CAAAATGTTTGTTGCATCAGTCA 57.030 34.783 0.00 2.62 0.00 3.41
7859 11388 1.597797 ATCCGAACTACCCGCGAACA 61.598 55.000 8.23 0.00 0.00 3.18
7868 11397 1.141053 AGGAATGGCCATCCGAACTAC 59.859 52.381 21.08 2.19 42.03 2.73
7873 11402 2.756042 CCCAGGAATGGCCATCCGA 61.756 63.158 21.08 0.00 42.03 4.55
7874 11403 2.203394 CCCAGGAATGGCCATCCG 60.203 66.667 21.08 16.06 42.03 4.18
7888 11417 1.832167 GCCCACTCAAAGTTGCCCA 60.832 57.895 0.00 0.00 0.00 5.36
7925 11454 3.056107 TCATCCTTGTACCAAACCTCTCG 60.056 47.826 0.00 0.00 0.00 4.04
7938 11467 1.002069 TCCCCAATGCTCATCCTTGT 58.998 50.000 0.00 0.00 0.00 3.16
8048 11578 6.017440 AGCAACAACAACAACTCGTATAATGT 60.017 34.615 0.00 0.00 0.00 2.71
8057 11587 2.187707 CAGCAGCAACAACAACAACTC 58.812 47.619 0.00 0.00 0.00 3.01
8059 11589 1.994916 ACAGCAGCAACAACAACAAC 58.005 45.000 0.00 0.00 0.00 3.32
8060 11590 2.288702 ACAACAGCAGCAACAACAACAA 60.289 40.909 0.00 0.00 0.00 2.83
8061 11591 1.271934 ACAACAGCAGCAACAACAACA 59.728 42.857 0.00 0.00 0.00 3.33
8068 11598 2.032030 ACGATACAACAACAGCAGCAAC 60.032 45.455 0.00 0.00 0.00 4.17
8069 11599 2.217750 ACGATACAACAACAGCAGCAA 58.782 42.857 0.00 0.00 0.00 3.91
8070 11600 1.877637 ACGATACAACAACAGCAGCA 58.122 45.000 0.00 0.00 0.00 4.41
8071 11601 2.093783 GGTACGATACAACAACAGCAGC 59.906 50.000 0.00 0.00 0.00 5.25
8075 11605 3.567530 TCGTGGTACGATACAACAACAG 58.432 45.455 0.00 0.00 46.73 3.16
8092 11622 2.654749 TTGAGTAGATGGCAGTCGTG 57.345 50.000 0.00 0.00 0.00 4.35
8093 11623 3.678056 TTTTGAGTAGATGGCAGTCGT 57.322 42.857 0.00 0.00 0.00 4.34
8155 11688 7.447374 TTTGAACAATCAATGGACTAATCGT 57.553 32.000 0.00 0.00 44.70 3.73
8221 11755 0.798776 GGTTGGCTGACATGAACTCG 59.201 55.000 0.00 0.00 0.00 4.18
8352 11895 3.620488 ACTCCAGCAGAACAGAAACAAA 58.380 40.909 0.00 0.00 0.00 2.83
8355 11898 3.471680 AGAACTCCAGCAGAACAGAAAC 58.528 45.455 0.00 0.00 0.00 2.78
8356 11899 3.845781 AGAACTCCAGCAGAACAGAAA 57.154 42.857 0.00 0.00 0.00 2.52
8391 11938 1.623811 GGGTCTAACCTGTCAGAAGCA 59.376 52.381 0.00 0.00 38.64 3.91
8415 11962 5.299279 TCATCCAAAGTTCAAAGTGGTTCTC 59.701 40.000 0.00 0.00 32.68 2.87
8417 11964 5.514274 TCATCCAAAGTTCAAAGTGGTTC 57.486 39.130 0.00 0.00 32.68 3.62
8436 11988 4.217118 GTCACTTTGCTCTTCACCAATCAT 59.783 41.667 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.