Multiple sequence alignment - TraesCS3B01G429000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G429000 chr3B 100.000 3824 0 0 1 3824 667710474 667706651 0.000000e+00 7062.0
1 TraesCS3B01G429000 chr3B 92.060 403 20 7 1911 2302 72459709 72459308 1.200000e-154 556.0
2 TraesCS3B01G429000 chr3B 91.457 398 24 5 1913 2302 396623271 396623666 4.350000e-149 538.0
3 TraesCS3B01G429000 chr3B 90.251 359 34 1 1089 1447 667644889 667644532 5.780000e-128 468.0
4 TraesCS3B01G429000 chr3B 85.550 436 33 17 1001 1436 667681393 667680988 2.730000e-116 429.0
5 TraesCS3B01G429000 chr3B 78.522 582 92 23 2735 3301 667680863 667680300 6.080000e-93 351.0
6 TraesCS3B01G429000 chr3B 100.000 58 0 0 1001 1058 667644950 667644893 1.450000e-19 108.0
7 TraesCS3B01G429000 chr3B 87.500 80 9 1 3313 3391 793037542 793037621 1.460000e-14 91.6
8 TraesCS3B01G429000 chr3A 85.175 1430 108 64 180 1543 644668491 644667100 0.000000e+00 1371.0
9 TraesCS3B01G429000 chr3A 85.473 592 51 20 2735 3306 644666629 644666053 5.500000e-163 584.0
10 TraesCS3B01G429000 chr3A 89.091 385 30 8 3407 3790 644666037 644665664 5.780000e-128 468.0
11 TraesCS3B01G429000 chr3A 86.560 439 32 12 1001 1439 644623538 644623127 3.480000e-125 459.0
12 TraesCS3B01G429000 chr3A 88.483 356 40 1 1092 1447 644610836 644610482 2.730000e-116 429.0
13 TraesCS3B01G429000 chr3A 87.697 317 27 5 2426 2737 644666964 644666655 3.630000e-95 359.0
14 TraesCS3B01G429000 chr3A 79.274 468 67 21 2735 3183 644623042 644622586 2.230000e-77 300.0
15 TraesCS3B01G429000 chr3A 95.726 117 5 0 2298 2414 447500678 447500794 5.040000e-44 189.0
16 TraesCS3B01G429000 chr3A 83.486 109 12 4 2467 2570 644609276 644609169 3.140000e-16 97.1
17 TraesCS3B01G429000 chr3A 91.379 58 2 1 1001 1058 644610897 644610843 4.100000e-10 76.8
18 TraesCS3B01G429000 chr3D 90.691 666 46 9 883 1543 505999460 505998806 0.000000e+00 872.0
19 TraesCS3B01G429000 chr3D 85.540 574 31 17 180 738 505999992 505999456 1.550000e-153 553.0
20 TraesCS3B01G429000 chr3D 88.591 447 26 6 2870 3306 505997754 505997323 1.570000e-143 520.0
21 TraesCS3B01G429000 chr3D 87.844 436 26 13 1001 1436 505779743 505779335 1.600000e-133 486.0
22 TraesCS3B01G429000 chr3D 86.758 438 31 14 1001 1438 505795449 505795039 2.690000e-126 462.0
23 TraesCS3B01G429000 chr3D 84.664 476 45 15 1001 1475 505982501 505982053 2.100000e-122 449.0
24 TraesCS3B01G429000 chr3D 93.307 254 10 3 2735 2986 505974027 505973779 6.040000e-98 368.0
25 TraesCS3B01G429000 chr3D 85.405 370 21 5 2484 2826 505998119 505997756 1.690000e-93 353.0
26 TraesCS3B01G429000 chr3D 92.946 241 15 1 3409 3649 505997305 505997067 2.190000e-92 350.0
27 TraesCS3B01G429000 chr3D 77.835 582 87 25 2735 3301 505794953 505794399 4.770000e-84 322.0
28 TraesCS3B01G429000 chr3D 90.230 174 11 3 2564 2737 505974220 505974053 4.970000e-54 222.0
29 TraesCS3B01G429000 chr3D 89.375 160 11 2 2426 2580 505981877 505981719 3.010000e-46 196.0
30 TraesCS3B01G429000 chr3D 91.129 124 11 0 1 124 506001750 506001627 6.570000e-38 169.0
31 TraesCS3B01G429000 chr3D 85.455 110 11 3 2467 2572 505778151 505778043 4.040000e-20 110.0
32 TraesCS3B01G429000 chr3D 94.030 67 4 0 3641 3707 505973785 505973719 6.760000e-18 102.0
33 TraesCS3B01G429000 chr6B 94.588 388 11 5 1923 2302 171730423 171730808 3.290000e-165 592.0
34 TraesCS3B01G429000 chr6B 86.035 401 43 7 1910 2302 678686129 678686524 5.910000e-113 418.0
35 TraesCS3B01G429000 chr4B 93.299 388 17 4 1923 2302 139197896 139197510 7.170000e-157 564.0
36 TraesCS3B01G429000 chr2B 93.299 388 17 5 1923 2302 331109494 331109880 7.170000e-157 564.0
37 TraesCS3B01G429000 chr2B 93.041 388 18 5 1923 2302 15737561 15737175 3.340000e-155 558.0
38 TraesCS3B01G429000 chr2B 92.784 388 19 4 1923 2302 15674993 15674607 1.550000e-153 553.0
39 TraesCS3B01G429000 chr2B 92.784 388 19 4 1923 2302 15800188 15799802 1.550000e-153 553.0
40 TraesCS3B01G429000 chr2B 88.000 400 36 7 1913 2302 48476663 48477060 2.690000e-126 462.0
41 TraesCS3B01G429000 chr2B 95.726 117 5 0 2298 2414 209740851 209740967 5.040000e-44 189.0
42 TraesCS3B01G429000 chr2B 94.915 118 6 0 2298 2415 48477106 48477223 6.520000e-43 185.0
43 TraesCS3B01G429000 chr2B 94.262 122 6 1 2298 2419 789045008 789044888 6.520000e-43 185.0
44 TraesCS3B01G429000 chr1B 93.316 389 14 7 1923 2302 308377291 308376906 7.170000e-157 564.0
45 TraesCS3B01G429000 chr1B 93.299 388 17 4 1923 2302 672741636 672742022 7.170000e-157 564.0
46 TraesCS3B01G429000 chr1B 94.958 119 6 0 2298 2416 599371123 599371005 1.810000e-43 187.0
47 TraesCS3B01G429000 chr1B 82.941 170 22 7 1674 1840 16953227 16953392 3.080000e-31 147.0
48 TraesCS3B01G429000 chr1B 89.412 85 9 0 1282 1366 589513387 589513471 1.450000e-19 108.0
49 TraesCS3B01G429000 chr1B 87.342 79 10 0 3314 3392 22742730 22742652 1.460000e-14 91.6
50 TraesCS3B01G429000 chrUn 93.041 388 18 4 1923 2302 78715589 78715975 3.340000e-155 558.0
51 TraesCS3B01G429000 chrUn 95.763 118 5 0 2298 2415 47552878 47552995 1.400000e-44 191.0
52 TraesCS3B01G429000 chr5B 91.500 400 24 5 1911 2302 416032446 416032049 3.360000e-150 542.0
53 TraesCS3B01G429000 chr5B 91.645 383 25 2 1911 2286 192860850 192861232 1.220000e-144 523.0
54 TraesCS3B01G429000 chr5B 97.345 113 3 0 2298 2410 255292932 255293044 3.900000e-45 193.0
55 TraesCS3B01G429000 chr5B 92.188 128 9 1 2298 2424 439543643 439543770 3.040000e-41 180.0
56 TraesCS3B01G429000 chr1A 86.500 400 41 8 1913 2302 555808370 555808766 9.820000e-116 427.0
57 TraesCS3B01G429000 chr6A 85.575 409 45 8 1905 2302 616110190 616110595 2.130000e-112 416.0
58 TraesCS3B01G429000 chr6A 91.603 131 9 2 2298 2426 616110641 616110771 3.040000e-41 180.0
59 TraesCS3B01G429000 chr6A 87.333 150 15 4 1687 1834 16243863 16243716 6.570000e-38 169.0
60 TraesCS3B01G429000 chr7B 85.714 378 28 12 1913 2283 202954779 202955137 3.610000e-100 375.0
61 TraesCS3B01G429000 chr1D 83.832 167 18 5 1282 1447 286389461 286389619 2.380000e-32 150.0
62 TraesCS3B01G429000 chr1D 83.832 167 18 5 1282 1447 400969679 400969521 2.380000e-32 150.0
63 TraesCS3B01G429000 chr1D 82.727 110 13 4 2466 2570 328845110 328845002 4.070000e-15 93.5
64 TraesCS3B01G429000 chr7A 82.635 167 21 5 1674 1839 40953663 40953822 1.430000e-29 141.0
65 TraesCS3B01G429000 chr2D 88.312 77 9 0 3313 3389 618888751 618888827 4.070000e-15 93.5
66 TraesCS3B01G429000 chr6D 85.393 89 7 3 2476 2559 429742769 429742682 1.890000e-13 87.9
67 TraesCS3B01G429000 chr7D 88.571 70 8 0 3322 3391 302746506 302746575 6.810000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G429000 chr3B 667706651 667710474 3823 True 7062.000000 7062 100.000000 1 3824 1 chr3B.!!$R2 3823
1 TraesCS3B01G429000 chr3B 667680300 667681393 1093 True 390.000000 429 82.036000 1001 3301 2 chr3B.!!$R4 2300
2 TraesCS3B01G429000 chr3A 644665664 644668491 2827 True 695.500000 1371 86.859000 180 3790 4 chr3A.!!$R3 3610
3 TraesCS3B01G429000 chr3A 644622586 644623538 952 True 379.500000 459 82.917000 1001 3183 2 chr3A.!!$R2 2182
4 TraesCS3B01G429000 chr3A 644609169 644610897 1728 True 200.966667 429 87.782667 1001 2570 3 chr3A.!!$R1 1569
5 TraesCS3B01G429000 chr3D 505997067 506001750 4683 True 469.500000 872 89.050333 1 3649 6 chr3D.!!$R5 3648
6 TraesCS3B01G429000 chr3D 505794399 505795449 1050 True 392.000000 462 82.296500 1001 3301 2 chr3D.!!$R2 2300
7 TraesCS3B01G429000 chr3D 505981719 505982501 782 True 322.500000 449 87.019500 1001 2580 2 chr3D.!!$R4 1579
8 TraesCS3B01G429000 chr3D 505778043 505779743 1700 True 298.000000 486 86.649500 1001 2572 2 chr3D.!!$R1 1571
9 TraesCS3B01G429000 chr3D 505973719 505974220 501 True 230.666667 368 92.522333 2564 3707 3 chr3D.!!$R3 1143
10 TraesCS3B01G429000 chr2B 48476663 48477223 560 False 323.500000 462 91.457500 1913 2415 2 chr2B.!!$F3 502
11 TraesCS3B01G429000 chr6A 616110190 616110771 581 False 298.000000 416 88.589000 1905 2426 2 chr6A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 2059 0.031449 GCATGCCGTCCTAGACTCTC 59.969 60.0 6.36 0.00 0.00 3.20 F
868 2510 0.107831 TCTTTTGCGGTACAGCCAGT 59.892 50.0 15.58 0.00 36.97 4.00 F
2365 5197 0.029567 GTCGATTCGAGCCGAGTCAT 59.970 55.0 9.42 1.87 41.49 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 4003 0.036875 AGGGAAAGGGAAACAGCGAG 59.963 55.0 0.0 0.0 0.0 5.03 R
2422 5254 0.250858 TGCAACTGGGGATGTGAGTG 60.251 55.0 0.0 0.0 0.0 3.51 R
3357 6986 0.031585 CAAGACAGGAACGGACGACA 59.968 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.775032 TAGCGGTCTTCGGCCACAAC 62.775 60.000 2.24 0.00 40.10 3.32
28 29 1.566018 CGGTCTTCGGCCACAACTTC 61.566 60.000 2.24 0.00 34.75 3.01
54 55 2.287668 GCTCGTGCTCGTACTTATCCAT 60.288 50.000 8.17 0.00 38.33 3.41
58 59 3.973135 CGTGCTCGTACTTATCCATACAC 59.027 47.826 0.00 0.00 0.00 2.90
60 61 2.978489 GCTCGTACTTATCCATACACGC 59.022 50.000 0.00 0.00 0.00 5.34
61 62 3.549423 GCTCGTACTTATCCATACACGCA 60.549 47.826 0.00 0.00 0.00 5.24
136 425 3.447586 ACGTGCCAGCTCTATCTAAAAGA 59.552 43.478 0.00 0.00 0.00 2.52
141 430 5.658634 TGCCAGCTCTATCTAAAAGAGAAGA 59.341 40.000 4.34 0.00 42.63 2.87
147 436 9.125026 AGCTCTATCTAAAAGAGAAGAAGAGAG 57.875 37.037 4.34 10.51 42.63 3.20
152 441 7.095695 TCTAAAAGAGAAGAAGAGAGCTAGC 57.904 40.000 6.62 6.62 0.00 3.42
155 444 3.290710 AGAGAAGAAGAGAGCTAGCAGG 58.709 50.000 18.83 0.00 0.00 4.85
156 445 2.362077 GAGAAGAAGAGAGCTAGCAGGG 59.638 54.545 18.83 0.00 0.00 4.45
157 446 2.107366 GAAGAAGAGAGCTAGCAGGGT 58.893 52.381 18.83 0.00 0.00 4.34
166 1705 2.017559 GCTAGCAGGGTCCGGTACTG 62.018 65.000 10.63 15.25 35.40 2.74
169 1708 4.814294 CAGGGTCCGGTACTGCGC 62.814 72.222 0.00 0.00 0.00 6.09
240 1820 1.721487 CCATTTGGTCGGTCGATGC 59.279 57.895 0.00 0.00 0.00 3.91
259 1839 2.202756 GATCGACCGAGGGTGCAC 60.203 66.667 8.80 8.80 35.25 4.57
312 1896 1.503818 GAAACTTGTCGCGCTGGGAA 61.504 55.000 5.56 0.00 0.00 3.97
313 1897 1.782028 AAACTTGTCGCGCTGGGAAC 61.782 55.000 5.56 0.00 0.00 3.62
452 2052 4.830765 GCCGTGCATGCCGTCCTA 62.831 66.667 16.68 0.00 0.00 2.94
454 2054 2.494445 CGTGCATGCCGTCCTAGA 59.506 61.111 16.68 0.00 0.00 2.43
456 2056 1.517832 GTGCATGCCGTCCTAGACT 59.482 57.895 16.68 0.00 0.00 3.24
457 2057 0.528684 GTGCATGCCGTCCTAGACTC 60.529 60.000 16.68 0.00 0.00 3.36
459 2059 0.031449 GCATGCCGTCCTAGACTCTC 59.969 60.000 6.36 0.00 0.00 3.20
460 2060 0.671251 CATGCCGTCCTAGACTCTCC 59.329 60.000 0.00 0.00 0.00 3.71
461 2061 0.553819 ATGCCGTCCTAGACTCTCCT 59.446 55.000 0.00 0.00 0.00 3.69
462 2062 1.210538 TGCCGTCCTAGACTCTCCTA 58.789 55.000 0.00 0.00 0.00 2.94
463 2063 1.134159 TGCCGTCCTAGACTCTCCTAC 60.134 57.143 0.00 0.00 0.00 3.18
464 2064 1.141455 GCCGTCCTAGACTCTCCTACT 59.859 57.143 0.00 0.00 0.00 2.57
522 2150 0.326904 ATCTGGGCCTGATCCTGTCA 60.327 55.000 19.15 0.00 35.05 3.58
547 2177 0.999406 CTGGACAACGCAATACCGAG 59.001 55.000 0.00 0.00 0.00 4.63
551 2181 0.319083 ACAACGCAATACCGAGACCA 59.681 50.000 0.00 0.00 0.00 4.02
558 2188 0.902531 AATACCGAGACCACCACCAG 59.097 55.000 0.00 0.00 0.00 4.00
561 2191 2.425592 CGAGACCACCACCAGCAA 59.574 61.111 0.00 0.00 0.00 3.91
562 2192 1.227823 CGAGACCACCACCAGCAAA 60.228 57.895 0.00 0.00 0.00 3.68
573 2211 2.564771 CACCAGCAAAGAGAGTGACAA 58.435 47.619 0.00 0.00 0.00 3.18
574 2212 2.945008 CACCAGCAAAGAGAGTGACAAA 59.055 45.455 0.00 0.00 0.00 2.83
625 2263 1.544691 CCGCCACACTGAAGTAGTAGT 59.455 52.381 0.00 0.00 37.60 2.73
640 2278 6.192234 AGTAGTAGTACGATGGAACACTTG 57.808 41.667 2.04 0.00 35.93 3.16
641 2279 5.392811 AGTAGTAGTACGATGGAACACTTGC 60.393 44.000 2.04 0.00 35.93 4.01
642 2280 7.524068 AGTAGTAGTACGATGGAACACTTGCT 61.524 42.308 2.04 0.00 35.93 3.91
643 2281 9.223557 AGTAGTAGTACGATGGAACACTTGCTC 62.224 44.444 2.04 0.00 35.93 4.26
648 2286 3.312404 TGGAACACTTGCTCAGAGC 57.688 52.632 16.21 16.21 42.82 4.09
689 2327 1.166129 TTTATTAAGCACGCGCCCAA 58.834 45.000 5.73 0.00 39.83 4.12
719 2357 0.894141 ACGCATGGCATGGCTAAAAA 59.106 45.000 27.48 0.00 0.00 1.94
742 2381 6.899892 AAGAATCAGTTTCTCCCTTCCTAT 57.100 37.500 0.00 0.00 44.09 2.57
745 2384 6.556874 AGAATCAGTTTCTCCCTTCCTATAGG 59.443 42.308 13.07 13.07 40.86 2.57
779 2421 5.350914 CACACTCAAAATGTTTTCTTGGCAA 59.649 36.000 0.00 0.00 0.00 4.52
813 2455 0.548510 AAGGTAGGCTTCCCATGAGC 59.451 55.000 6.54 0.00 39.41 4.26
820 2462 2.158696 AGGCTTCCCATGAGCTAATCAC 60.159 50.000 5.02 0.00 41.91 3.06
821 2463 2.225467 GCTTCCCATGAGCTAATCACC 58.775 52.381 0.00 0.00 41.91 4.02
822 2464 2.158696 GCTTCCCATGAGCTAATCACCT 60.159 50.000 0.00 0.00 41.91 4.00
825 2467 3.653164 TCCCATGAGCTAATCACCTACA 58.347 45.455 0.00 0.00 41.91 2.74
826 2468 4.037222 TCCCATGAGCTAATCACCTACAA 58.963 43.478 0.00 0.00 41.91 2.41
827 2469 4.130118 CCCATGAGCTAATCACCTACAAC 58.870 47.826 0.00 0.00 41.91 3.32
828 2470 4.384098 CCCATGAGCTAATCACCTACAACA 60.384 45.833 0.00 0.00 41.91 3.33
829 2471 5.185454 CCATGAGCTAATCACCTACAACAA 58.815 41.667 0.00 0.00 41.91 2.83
830 2472 5.647658 CCATGAGCTAATCACCTACAACAAA 59.352 40.000 0.00 0.00 41.91 2.83
831 2473 6.319658 CCATGAGCTAATCACCTACAACAAAT 59.680 38.462 0.00 0.00 41.91 2.32
832 2474 6.985188 TGAGCTAATCACCTACAACAAATC 57.015 37.500 0.00 0.00 31.12 2.17
833 2475 5.880332 TGAGCTAATCACCTACAACAAATCC 59.120 40.000 0.00 0.00 31.12 3.01
839 2481 6.575162 ATCACCTACAACAAATCCAAGAAC 57.425 37.500 0.00 0.00 0.00 3.01
844 2486 6.379988 ACCTACAACAAATCCAAGAACAAACT 59.620 34.615 0.00 0.00 0.00 2.66
846 2488 7.860872 CCTACAACAAATCCAAGAACAAACTAC 59.139 37.037 0.00 0.00 0.00 2.73
848 2490 7.257722 ACAACAAATCCAAGAACAAACTACTG 58.742 34.615 0.00 0.00 0.00 2.74
855 2497 7.083875 TCCAAGAACAAACTACTGTCTTTTG 57.916 36.000 10.78 10.78 36.49 2.44
857 2499 5.156804 AGAACAAACTACTGTCTTTTGCG 57.843 39.130 11.81 0.00 34.22 4.85
868 2510 0.107831 TCTTTTGCGGTACAGCCAGT 59.892 50.000 15.58 0.00 36.97 4.00
877 2519 1.373570 GTACAGCCAGTCAATGAGCC 58.626 55.000 0.00 0.00 0.00 4.70
919 2562 5.761205 TCTATAAATAAGCCACAGCCCAAA 58.239 37.500 0.00 0.00 41.25 3.28
947 2590 1.594331 AGAAACCGACCAAGAAGCAC 58.406 50.000 0.00 0.00 0.00 4.40
953 2596 1.845809 CGACCAAGAAGCACCAGCAC 61.846 60.000 0.00 0.00 45.49 4.40
958 2610 0.882042 AAGAAGCACCAGCACACGAG 60.882 55.000 0.00 0.00 45.49 4.18
962 2614 2.943345 GCACCAGCACACGAGTTCG 61.943 63.158 0.00 0.00 42.54 3.95
965 2617 1.734477 CCAGCACACGAGTTCGAGG 60.734 63.158 8.72 2.78 43.02 4.63
976 2628 1.984297 GAGTTCGAGGTAGACAAACGC 59.016 52.381 0.00 0.00 0.00 4.84
980 2632 3.031660 GAGGTAGACAAACGCCTCG 57.968 57.895 0.00 0.00 36.48 4.63
1146 2801 2.876581 CAGGTGCATCATGCTGGAA 58.123 52.632 11.84 0.00 45.31 3.53
1448 3114 1.657181 CTTGTTTTCCCGTGCACGC 60.657 57.895 33.17 18.62 38.18 5.34
1449 3115 2.329678 CTTGTTTTCCCGTGCACGCA 62.330 55.000 33.17 21.04 38.18 5.24
1450 3116 1.934220 TTGTTTTCCCGTGCACGCAA 61.934 50.000 33.17 25.24 38.18 4.85
1485 3186 1.087771 AATCGTTTCGGGATGACGCC 61.088 55.000 0.00 0.00 36.77 5.68
1545 3247 6.749923 ACTCTCTGTTTATGCTTCCATTTC 57.250 37.500 0.00 0.00 32.85 2.17
1546 3248 6.479884 ACTCTCTGTTTATGCTTCCATTTCT 58.520 36.000 0.00 0.00 32.85 2.52
1548 3250 8.270744 ACTCTCTGTTTATGCTTCCATTTCTAT 58.729 33.333 0.00 0.00 32.85 1.98
1611 3856 6.443934 AGGTTTTAAACATTTTTGGTTGGC 57.556 33.333 10.14 0.00 0.00 4.52
1613 3858 4.537936 TTTAAACATTTTTGGTTGGCGC 57.462 36.364 0.00 0.00 0.00 6.53
1615 3860 1.580815 AACATTTTTGGTTGGCGCAG 58.419 45.000 10.83 0.00 0.00 5.18
1629 3894 3.342719 TGGCGCAGTCTAAATTTGATGA 58.657 40.909 10.83 0.00 0.00 2.92
1630 3895 3.755905 TGGCGCAGTCTAAATTTGATGAA 59.244 39.130 10.83 0.00 0.00 2.57
1631 3896 4.217334 TGGCGCAGTCTAAATTTGATGAAA 59.783 37.500 10.83 0.00 0.00 2.69
1632 3897 4.795278 GGCGCAGTCTAAATTTGATGAAAG 59.205 41.667 10.83 0.00 0.00 2.62
1634 3899 6.086222 GCGCAGTCTAAATTTGATGAAAGAA 58.914 36.000 0.30 0.00 0.00 2.52
1635 3900 6.032880 GCGCAGTCTAAATTTGATGAAAGAAC 59.967 38.462 0.30 0.00 0.00 3.01
1637 3902 7.269937 CGCAGTCTAAATTTGATGAAAGAACTG 59.730 37.037 0.00 6.36 0.00 3.16
1661 3926 8.455903 TGAAATTTTCAGCATATAGAAGGAGG 57.544 34.615 7.74 0.00 34.08 4.30
1662 3927 8.274322 TGAAATTTTCAGCATATAGAAGGAGGA 58.726 33.333 7.74 0.00 34.08 3.71
1663 3928 9.125026 GAAATTTTCAGCATATAGAAGGAGGAA 57.875 33.333 4.25 0.00 0.00 3.36
1664 3929 9.652114 AAATTTTCAGCATATAGAAGGAGGAAT 57.348 29.630 0.00 0.00 0.00 3.01
1665 3930 8.860780 ATTTTCAGCATATAGAAGGAGGAATC 57.139 34.615 0.00 0.00 0.00 2.52
1666 3931 6.365970 TTCAGCATATAGAAGGAGGAATCC 57.634 41.667 0.00 0.00 0.00 3.01
1667 3932 4.780021 TCAGCATATAGAAGGAGGAATCCC 59.220 45.833 0.00 0.00 0.00 3.85
1669 3934 4.782156 AGCATATAGAAGGAGGAATCCCTG 59.218 45.833 0.00 0.00 44.53 4.45
1670 3935 4.080638 GCATATAGAAGGAGGAATCCCTGG 60.081 50.000 0.00 0.00 44.53 4.45
1671 3936 5.345418 CATATAGAAGGAGGAATCCCTGGA 58.655 45.833 0.00 0.00 44.53 3.86
1672 3937 2.668850 AGAAGGAGGAATCCCTGGAA 57.331 50.000 0.00 0.00 44.53 3.53
1673 3938 3.157556 AGAAGGAGGAATCCCTGGAAT 57.842 47.619 0.00 0.00 44.53 3.01
1674 3939 3.478991 AGAAGGAGGAATCCCTGGAATT 58.521 45.455 0.00 0.00 44.53 2.17
1675 3940 3.203934 AGAAGGAGGAATCCCTGGAATTG 59.796 47.826 0.00 0.00 44.53 2.32
1676 3941 2.577970 AGGAGGAATCCCTGGAATTGT 58.422 47.619 0.00 0.00 44.53 2.71
1677 3942 2.929043 AGGAGGAATCCCTGGAATTGTT 59.071 45.455 0.00 0.00 44.53 2.83
1678 3943 3.026694 GGAGGAATCCCTGGAATTGTTG 58.973 50.000 0.00 0.00 44.53 3.33
1679 3944 2.428530 GAGGAATCCCTGGAATTGTTGC 59.571 50.000 0.00 0.00 44.53 4.17
1680 3945 1.482182 GGAATCCCTGGAATTGTTGCC 59.518 52.381 0.00 0.00 0.00 4.52
1681 3946 2.460669 GAATCCCTGGAATTGTTGCCT 58.539 47.619 0.00 0.00 0.00 4.75
1682 3947 2.149973 ATCCCTGGAATTGTTGCCTC 57.850 50.000 0.00 0.00 0.00 4.70
1683 3948 0.322456 TCCCTGGAATTGTTGCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
1684 3949 0.609131 CCCTGGAATTGTTGCCTCGT 60.609 55.000 0.00 0.00 0.00 4.18
1685 3950 1.339631 CCCTGGAATTGTTGCCTCGTA 60.340 52.381 0.00 0.00 0.00 3.43
1686 3951 2.009774 CCTGGAATTGTTGCCTCGTAG 58.990 52.381 0.00 0.00 0.00 3.51
1687 3952 2.615493 CCTGGAATTGTTGCCTCGTAGT 60.615 50.000 0.00 0.00 0.00 2.73
1688 3953 2.416547 CTGGAATTGTTGCCTCGTAGTG 59.583 50.000 0.00 0.00 0.00 2.74
1689 3954 1.737793 GGAATTGTTGCCTCGTAGTGG 59.262 52.381 0.00 0.00 45.21 4.00
1690 3955 2.614481 GGAATTGTTGCCTCGTAGTGGA 60.614 50.000 0.00 0.00 45.27 4.02
1691 3956 2.094762 ATTGTTGCCTCGTAGTGGAC 57.905 50.000 0.00 0.00 45.27 4.02
1702 3967 1.058695 CGTAGTGGACGTTTCGATTGC 59.941 52.381 0.00 0.00 46.86 3.56
1703 3968 1.058695 GTAGTGGACGTTTCGATTGCG 59.941 52.381 0.00 0.00 39.35 4.85
1704 3969 0.319211 AGTGGACGTTTCGATTGCGA 60.319 50.000 10.04 0.00 46.33 5.10
1712 3977 2.278596 TCGATTGCGAGCGCCTAC 60.279 61.111 6.76 0.00 42.51 3.18
1713 3978 2.582226 CGATTGCGAGCGCCTACA 60.582 61.111 12.70 0.00 40.82 2.74
1714 3979 2.580470 CGATTGCGAGCGCCTACAG 61.580 63.158 12.70 0.00 40.82 2.74
1715 3980 2.875786 GATTGCGAGCGCCTACAGC 61.876 63.158 12.70 3.21 41.09 4.40
1724 3989 2.437895 GCCTACAGCGGGTTTCCC 60.438 66.667 0.00 0.00 41.09 3.97
1725 3990 2.967946 GCCTACAGCGGGTTTCCCT 61.968 63.158 3.25 0.00 42.67 4.20
1726 3991 1.078426 CCTACAGCGGGTTTCCCTG 60.078 63.158 3.25 0.00 42.67 4.45
1727 3992 1.078426 CTACAGCGGGTTTCCCTGG 60.078 63.158 3.25 0.00 42.67 4.45
1728 3993 1.536907 TACAGCGGGTTTCCCTGGA 60.537 57.895 0.00 0.00 42.67 3.86
1729 3994 1.128809 TACAGCGGGTTTCCCTGGAA 61.129 55.000 0.00 0.00 42.67 3.53
1730 3995 1.000896 CAGCGGGTTTCCCTGGAAT 60.001 57.895 0.00 0.00 42.67 3.01
1731 3996 1.000896 AGCGGGTTTCCCTGGAATG 60.001 57.895 0.00 0.00 42.67 2.67
1732 3997 2.710902 GCGGGTTTCCCTGGAATGC 61.711 63.158 0.00 0.00 42.67 3.56
1733 3998 1.000896 CGGGTTTCCCTGGAATGCT 60.001 57.895 0.00 0.00 42.67 3.79
1734 3999 0.611896 CGGGTTTCCCTGGAATGCTT 60.612 55.000 0.00 0.00 42.67 3.91
1735 4000 0.897621 GGGTTTCCCTGGAATGCTTG 59.102 55.000 0.00 0.00 41.34 4.01
1736 4001 1.549950 GGGTTTCCCTGGAATGCTTGA 60.550 52.381 0.00 0.00 41.34 3.02
1737 4002 1.821136 GGTTTCCCTGGAATGCTTGAG 59.179 52.381 0.00 0.00 33.79 3.02
1738 4003 1.203287 GTTTCCCTGGAATGCTTGAGC 59.797 52.381 0.00 0.00 42.50 4.26
1739 4004 0.700564 TTCCCTGGAATGCTTGAGCT 59.299 50.000 4.44 0.00 42.66 4.09
1740 4005 0.254178 TCCCTGGAATGCTTGAGCTC 59.746 55.000 6.82 6.82 42.66 4.09
1741 4006 1.094073 CCCTGGAATGCTTGAGCTCG 61.094 60.000 9.64 0.00 42.66 5.03
1742 4007 1.712977 CCTGGAATGCTTGAGCTCGC 61.713 60.000 9.64 7.98 42.66 5.03
1743 4008 0.743701 CTGGAATGCTTGAGCTCGCT 60.744 55.000 9.64 0.00 42.66 4.93
1744 4009 1.022982 TGGAATGCTTGAGCTCGCTG 61.023 55.000 9.64 2.62 42.66 5.18
1745 4010 1.023513 GGAATGCTTGAGCTCGCTGT 61.024 55.000 9.64 0.00 42.66 4.40
1746 4011 0.801251 GAATGCTTGAGCTCGCTGTT 59.199 50.000 9.64 6.84 42.66 3.16
1747 4012 1.198637 GAATGCTTGAGCTCGCTGTTT 59.801 47.619 9.64 0.00 42.66 2.83
1748 4013 0.801251 ATGCTTGAGCTCGCTGTTTC 59.199 50.000 9.64 0.00 42.66 2.78
1749 4014 1.230635 TGCTTGAGCTCGCTGTTTCC 61.231 55.000 9.64 0.00 42.66 3.13
1750 4015 1.916697 GCTTGAGCTCGCTGTTTCCC 61.917 60.000 9.64 0.00 38.21 3.97
1751 4016 0.321122 CTTGAGCTCGCTGTTTCCCT 60.321 55.000 9.64 0.00 0.00 4.20
1752 4017 0.108585 TTGAGCTCGCTGTTTCCCTT 59.891 50.000 9.64 0.00 0.00 3.95
1753 4018 0.108585 TGAGCTCGCTGTTTCCCTTT 59.891 50.000 9.64 0.00 0.00 3.11
1754 4019 0.799393 GAGCTCGCTGTTTCCCTTTC 59.201 55.000 0.00 0.00 0.00 2.62
1755 4020 0.606673 AGCTCGCTGTTTCCCTTTCC 60.607 55.000 0.00 0.00 0.00 3.13
1756 4021 1.587043 GCTCGCTGTTTCCCTTTCCC 61.587 60.000 0.00 0.00 0.00 3.97
1757 4022 0.036875 CTCGCTGTTTCCCTTTCCCT 59.963 55.000 0.00 0.00 0.00 4.20
1758 4023 0.476771 TCGCTGTTTCCCTTTCCCTT 59.523 50.000 0.00 0.00 0.00 3.95
1759 4024 1.133606 TCGCTGTTTCCCTTTCCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
1760 4025 1.686587 CGCTGTTTCCCTTTCCCTTTT 59.313 47.619 0.00 0.00 0.00 2.27
1761 4026 2.102420 CGCTGTTTCCCTTTCCCTTTTT 59.898 45.455 0.00 0.00 0.00 1.94
1762 4027 3.728845 GCTGTTTCCCTTTCCCTTTTTC 58.271 45.455 0.00 0.00 0.00 2.29
1763 4028 3.798889 GCTGTTTCCCTTTCCCTTTTTCG 60.799 47.826 0.00 0.00 0.00 3.46
1764 4029 3.367321 TGTTTCCCTTTCCCTTTTTCGT 58.633 40.909 0.00 0.00 0.00 3.85
1765 4030 3.770388 TGTTTCCCTTTCCCTTTTTCGTT 59.230 39.130 0.00 0.00 0.00 3.85
1766 4031 4.223255 TGTTTCCCTTTCCCTTTTTCGTTT 59.777 37.500 0.00 0.00 0.00 3.60
1767 4032 4.659111 TTCCCTTTCCCTTTTTCGTTTC 57.341 40.909 0.00 0.00 0.00 2.78
1768 4033 2.619646 TCCCTTTCCCTTTTTCGTTTCG 59.380 45.455 0.00 0.00 0.00 3.46
1769 4034 2.619646 CCCTTTCCCTTTTTCGTTTCGA 59.380 45.455 0.00 0.00 0.00 3.71
1770 4035 3.549423 CCCTTTCCCTTTTTCGTTTCGAC 60.549 47.826 0.00 0.00 34.89 4.20
1771 4036 3.314357 CCTTTCCCTTTTTCGTTTCGACT 59.686 43.478 0.00 0.00 34.89 4.18
1772 4037 3.955771 TTCCCTTTTTCGTTTCGACTG 57.044 42.857 0.00 0.00 34.89 3.51
1773 4038 2.215196 TCCCTTTTTCGTTTCGACTGG 58.785 47.619 0.00 0.00 34.89 4.00
1774 4039 2.158928 TCCCTTTTTCGTTTCGACTGGA 60.159 45.455 0.00 0.00 34.89 3.86
1775 4040 2.032290 CCCTTTTTCGTTTCGACTGGAC 60.032 50.000 0.00 0.00 34.89 4.02
1776 4041 2.032290 CCTTTTTCGTTTCGACTGGACC 60.032 50.000 0.00 0.00 34.89 4.46
1777 4042 2.607631 TTTTCGTTTCGACTGGACCT 57.392 45.000 0.00 0.00 34.89 3.85
1778 4043 2.607631 TTTCGTTTCGACTGGACCTT 57.392 45.000 0.00 0.00 34.89 3.50
1779 4044 3.731652 TTTCGTTTCGACTGGACCTTA 57.268 42.857 0.00 0.00 34.89 2.69
1780 4045 3.947910 TTCGTTTCGACTGGACCTTAT 57.052 42.857 0.00 0.00 34.89 1.73
1781 4046 3.947910 TCGTTTCGACTGGACCTTATT 57.052 42.857 0.00 0.00 0.00 1.40
1782 4047 3.841643 TCGTTTCGACTGGACCTTATTC 58.158 45.455 0.00 0.00 0.00 1.75
1783 4048 2.597305 CGTTTCGACTGGACCTTATTCG 59.403 50.000 0.00 0.00 0.00 3.34
1784 4049 3.582780 GTTTCGACTGGACCTTATTCGT 58.417 45.455 0.00 0.00 0.00 3.85
1785 4050 4.672542 CGTTTCGACTGGACCTTATTCGTA 60.673 45.833 0.00 0.00 0.00 3.43
1786 4051 5.346522 GTTTCGACTGGACCTTATTCGTAT 58.653 41.667 0.00 0.00 0.00 3.06
1787 4052 5.587388 TTCGACTGGACCTTATTCGTATT 57.413 39.130 0.00 0.00 0.00 1.89
1788 4053 5.587388 TCGACTGGACCTTATTCGTATTT 57.413 39.130 0.00 0.00 0.00 1.40
1789 4054 5.585390 TCGACTGGACCTTATTCGTATTTC 58.415 41.667 0.00 0.00 0.00 2.17
1790 4055 4.743644 CGACTGGACCTTATTCGTATTTCC 59.256 45.833 0.00 0.00 0.00 3.13
1791 4056 4.690122 ACTGGACCTTATTCGTATTTCCG 58.310 43.478 0.00 0.00 0.00 4.30
1792 4057 4.161001 ACTGGACCTTATTCGTATTTCCGT 59.839 41.667 0.00 0.00 0.00 4.69
1793 4058 5.088680 TGGACCTTATTCGTATTTCCGTT 57.911 39.130 0.00 0.00 0.00 4.44
1794 4059 6.127366 ACTGGACCTTATTCGTATTTCCGTTA 60.127 38.462 0.00 0.00 0.00 3.18
1795 4060 6.819284 TGGACCTTATTCGTATTTCCGTTAT 58.181 36.000 0.00 0.00 0.00 1.89
1796 4061 7.274447 TGGACCTTATTCGTATTTCCGTTATT 58.726 34.615 0.00 0.00 0.00 1.40
1797 4062 7.769970 TGGACCTTATTCGTATTTCCGTTATTT 59.230 33.333 0.00 0.00 0.00 1.40
1798 4063 8.615211 GGACCTTATTCGTATTTCCGTTATTTT 58.385 33.333 0.00 0.00 0.00 1.82
1799 4064 9.992910 GACCTTATTCGTATTTCCGTTATTTTT 57.007 29.630 0.00 0.00 0.00 1.94
1813 4078 8.240267 TCCGTTATTTTTATAATGGAAAGGGG 57.760 34.615 13.72 0.00 44.71 4.79
1814 4079 8.060075 TCCGTTATTTTTATAATGGAAAGGGGA 58.940 33.333 13.72 0.00 44.71 4.81
1815 4080 8.139350 CCGTTATTTTTATAATGGAAAGGGGAC 58.861 37.037 9.54 0.00 42.86 4.46
1819 4084 7.891498 TTTTTATAATGGAAAGGGGACTAGC 57.109 36.000 0.00 0.00 42.68 3.42
1820 4085 5.578157 TTATAATGGAAAGGGGACTAGCC 57.422 43.478 0.00 0.00 42.68 3.93
1868 4133 9.920946 AAATAAAAGGAGGAATCAATACTAGCA 57.079 29.630 0.00 0.00 0.00 3.49
1871 4136 7.814264 AAAGGAGGAATCAATACTAGCATTG 57.186 36.000 9.13 9.13 37.27 2.82
1872 4137 6.753913 AGGAGGAATCAATACTAGCATTGA 57.246 37.500 18.53 18.53 46.15 2.57
1873 4138 6.767456 AGGAGGAATCAATACTAGCATTGAG 58.233 40.000 20.34 0.00 45.51 3.02
1874 4139 6.328672 AGGAGGAATCAATACTAGCATTGAGT 59.671 38.462 20.34 18.51 45.51 3.41
1875 4140 7.510685 AGGAGGAATCAATACTAGCATTGAGTA 59.489 37.037 20.34 2.04 45.51 2.59
1876 4141 7.600752 GGAGGAATCAATACTAGCATTGAGTAC 59.399 40.741 20.34 18.77 45.51 2.73
1877 4142 8.256356 AGGAATCAATACTAGCATTGAGTACT 57.744 34.615 20.47 20.47 45.04 2.73
1878 4143 8.364142 AGGAATCAATACTAGCATTGAGTACTC 58.636 37.037 20.47 16.32 46.20 2.59
1879 4144 8.364142 GGAATCAATACTAGCATTGAGTACTCT 58.636 37.037 23.01 5.66 45.51 3.24
1882 4147 8.982091 TCAATACTAGCATTGAGTACTCTAGT 57.018 34.615 23.01 21.06 39.43 2.57
1886 4151 7.753309 ACTAGCATTGAGTACTCTAGTATGG 57.247 40.000 23.01 11.02 38.41 2.74
1887 4152 7.291566 ACTAGCATTGAGTACTCTAGTATGGT 58.708 38.462 23.01 22.97 38.41 3.55
1888 4153 7.780745 ACTAGCATTGAGTACTCTAGTATGGTT 59.219 37.037 23.01 10.06 38.41 3.67
1889 4154 7.045126 AGCATTGAGTACTCTAGTATGGTTC 57.955 40.000 23.01 9.10 32.54 3.62
1890 4155 5.915758 GCATTGAGTACTCTAGTATGGTTCG 59.084 44.000 23.01 2.41 32.54 3.95
1891 4156 6.439599 CATTGAGTACTCTAGTATGGTTCGG 58.560 44.000 23.01 0.00 32.54 4.30
1902 4167 1.866015 ATGGTTCGGATGAGTGAGGA 58.134 50.000 0.00 0.00 0.00 3.71
1910 4683 2.402564 GGATGAGTGAGGAAGATCCCA 58.597 52.381 0.00 0.00 37.19 4.37
1913 4686 1.909302 TGAGTGAGGAAGATCCCAACC 59.091 52.381 0.00 0.00 37.19 3.77
1914 4687 2.192263 GAGTGAGGAAGATCCCAACCT 58.808 52.381 0.00 0.00 37.19 3.50
1915 4688 1.912043 AGTGAGGAAGATCCCAACCTG 59.088 52.381 0.00 0.00 37.19 4.00
1917 4690 2.838202 GTGAGGAAGATCCCAACCTGTA 59.162 50.000 0.00 0.00 37.19 2.74
1918 4691 3.107601 TGAGGAAGATCCCAACCTGTAG 58.892 50.000 0.00 0.00 37.19 2.74
1919 4692 3.108376 GAGGAAGATCCCAACCTGTAGT 58.892 50.000 0.00 0.00 37.19 2.73
1920 4693 3.108376 AGGAAGATCCCAACCTGTAGTC 58.892 50.000 0.00 0.00 37.19 2.59
1921 4694 2.170817 GGAAGATCCCAACCTGTAGTCC 59.829 54.545 0.00 0.00 0.00 3.85
2028 4802 5.124457 TCGTTACTATAACGAGCTCAAACCT 59.876 40.000 17.37 0.00 46.21 3.50
2066 4840 1.667154 ATAACTCGCGAGCTGGCTCA 61.667 55.000 34.83 8.80 42.86 4.26
2089 4863 9.530129 CTCATTTAGCTTGTTAAACTCGTTTAG 57.470 33.333 0.00 0.00 36.52 1.85
2209 4990 0.322906 GGCTAGGCCTTCAACTGCTT 60.323 55.000 12.58 0.00 46.69 3.91
2226 5007 4.514585 TGGCCTTGGGTTGTGCGT 62.515 61.111 3.32 0.00 0.00 5.24
2263 5044 6.317789 TGTTTAGTGGCTGATCTTTCTTTG 57.682 37.500 0.00 0.00 0.00 2.77
2276 5058 5.319043 TCTTTCTTTGTATTGGGAGTGGT 57.681 39.130 0.00 0.00 0.00 4.16
2285 5067 6.174720 TGTATTGGGAGTGGTTGATCTATC 57.825 41.667 0.00 0.00 0.00 2.08
2286 5068 5.665360 TGTATTGGGAGTGGTTGATCTATCA 59.335 40.000 0.00 0.00 34.44 2.15
2309 5141 7.827701 TCATATCGAGCCTAACGATCTTAAAT 58.172 34.615 0.00 0.00 45.32 1.40
2323 5155 5.234329 CGATCTTAAATTAAAGCTCGGCTCA 59.766 40.000 0.00 0.00 39.94 4.26
2332 5164 0.601558 AGCTCGGCTCAACTCGTTAA 59.398 50.000 0.00 0.00 30.62 2.01
2365 5197 0.029567 GTCGATTCGAGCCGAGTCAT 59.970 55.000 9.42 1.87 41.49 3.06
2421 5253 4.967084 TTTTCCAGCCTTACTGTAGTCA 57.033 40.909 0.00 0.00 45.68 3.41
2422 5254 3.955650 TTCCAGCCTTACTGTAGTCAC 57.044 47.619 0.00 0.00 45.68 3.67
2423 5255 2.884320 TCCAGCCTTACTGTAGTCACA 58.116 47.619 0.00 0.00 45.68 3.58
2424 5256 2.561419 TCCAGCCTTACTGTAGTCACAC 59.439 50.000 0.00 0.00 45.68 3.82
2451 5288 2.167487 TCCCCAGTTGCAAAACAGAAAC 59.833 45.455 0.00 0.00 0.00 2.78
2466 5303 4.455606 ACAGAAACAGAAAGGGAACTCAG 58.544 43.478 0.00 0.00 42.68 3.35
2551 6060 1.827681 TCTGTCTCCTCTCTCCAACG 58.172 55.000 0.00 0.00 0.00 4.10
2560 6069 5.010112 TCTCCTCTCTCCAACGCATAATTAG 59.990 44.000 0.00 0.00 0.00 1.73
2621 6131 9.765795 ATGCTAATCTTTATACCTTGAGTGTAC 57.234 33.333 0.00 0.00 0.00 2.90
2629 6139 8.671384 TTTATACCTTGAGTGTACCATTATGC 57.329 34.615 0.00 0.00 0.00 3.14
2649 6159 2.558359 GCCTTCATACAAAACCAGCAGT 59.442 45.455 0.00 0.00 0.00 4.40
2650 6160 3.612479 GCCTTCATACAAAACCAGCAGTG 60.612 47.826 0.00 0.00 0.00 3.66
2651 6161 3.568538 CTTCATACAAAACCAGCAGTGC 58.431 45.455 7.13 7.13 0.00 4.40
2652 6162 1.535028 TCATACAAAACCAGCAGTGCG 59.465 47.619 10.00 4.69 0.00 5.34
2915 6512 0.990374 AGGTGGCTGAAGCTGAAGAT 59.010 50.000 1.74 0.00 41.70 2.40
3056 6658 3.070018 CCACAGAACTGCGAGAAATCTT 58.930 45.455 1.46 0.00 0.00 2.40
3112 6722 3.930336 TCAGAAGCTTGTCATTCGTCAT 58.070 40.909 2.10 0.00 0.00 3.06
3113 6723 5.072040 TCAGAAGCTTGTCATTCGTCATA 57.928 39.130 2.10 0.00 0.00 2.15
3114 6724 5.105063 TCAGAAGCTTGTCATTCGTCATAG 58.895 41.667 2.10 0.00 0.00 2.23
3115 6725 4.269603 CAGAAGCTTGTCATTCGTCATAGG 59.730 45.833 2.10 0.00 0.00 2.57
3116 6726 2.555199 AGCTTGTCATTCGTCATAGGC 58.445 47.619 0.00 0.00 0.00 3.93
3117 6727 2.093500 AGCTTGTCATTCGTCATAGGCA 60.093 45.455 0.00 0.00 0.00 4.75
3118 6728 2.677836 GCTTGTCATTCGTCATAGGCAA 59.322 45.455 0.00 0.00 0.00 4.52
3119 6729 3.313526 GCTTGTCATTCGTCATAGGCAAT 59.686 43.478 0.00 0.00 0.00 3.56
3120 6730 4.787563 GCTTGTCATTCGTCATAGGCAATG 60.788 45.833 0.00 0.00 36.88 2.82
3121 6731 3.205338 TGTCATTCGTCATAGGCAATGG 58.795 45.455 0.00 0.00 36.15 3.16
3122 6732 3.206150 GTCATTCGTCATAGGCAATGGT 58.794 45.455 0.00 0.00 36.15 3.55
3123 6733 3.248602 GTCATTCGTCATAGGCAATGGTC 59.751 47.826 0.00 0.00 36.15 4.02
3124 6734 3.118445 TCATTCGTCATAGGCAATGGTCA 60.118 43.478 0.00 0.00 36.15 4.02
3125 6735 2.309528 TCGTCATAGGCAATGGTCAC 57.690 50.000 0.00 0.00 36.15 3.67
3146 6759 3.805971 ACTAGGTGTTCTAAACGTGCAAC 59.194 43.478 0.00 0.00 0.00 4.17
3164 6778 1.316706 ACTCGGAGACCTGCTAGTGC 61.317 60.000 12.86 0.00 40.20 4.40
3185 6801 7.830739 AGTGCTTTTAATCTTCCTTGTAATGG 58.169 34.615 0.00 0.00 0.00 3.16
3209 6825 3.402628 TTAGGAGCTCCAACTGTGTTC 57.597 47.619 33.90 3.23 38.89 3.18
3247 6863 5.355071 TGAGCTTTGCAAATATGTCAGTAGG 59.645 40.000 13.23 0.00 0.00 3.18
3306 6935 9.301153 TGAACTTTAATTTGCTTTCAAAGAGTC 57.699 29.630 0.00 0.00 44.47 3.36
3307 6936 9.301153 GAACTTTAATTTGCTTTCAAAGAGTCA 57.699 29.630 0.00 0.00 44.47 3.41
3308 6937 9.822185 AACTTTAATTTGCTTTCAAAGAGTCAT 57.178 25.926 0.00 0.00 44.47 3.06
3309 6938 9.252962 ACTTTAATTTGCTTTCAAAGAGTCATG 57.747 29.630 0.00 0.00 44.47 3.07
3311 6940 9.985730 TTTAATTTGCTTTCAAAGAGTCATGAT 57.014 25.926 0.00 0.00 44.47 2.45
3312 6941 7.884816 AATTTGCTTTCAAAGAGTCATGATG 57.115 32.000 0.00 0.00 44.47 3.07
3314 6943 4.654915 TGCTTTCAAAGAGTCATGATGGA 58.345 39.130 0.00 0.00 0.00 3.41
3315 6944 4.456911 TGCTTTCAAAGAGTCATGATGGAC 59.543 41.667 0.00 0.00 38.08 4.02
3316 6945 4.456911 GCTTTCAAAGAGTCATGATGGACA 59.543 41.667 0.00 0.00 40.29 4.02
3317 6946 5.618640 GCTTTCAAAGAGTCATGATGGACAC 60.619 44.000 0.00 0.00 40.29 3.67
3318 6947 4.622260 TCAAAGAGTCATGATGGACACA 57.378 40.909 0.00 0.00 40.29 3.72
3320 6949 2.687700 AGAGTCATGATGGACACAGC 57.312 50.000 0.00 0.00 40.29 4.40
3321 6950 1.134877 AGAGTCATGATGGACACAGCG 60.135 52.381 0.00 0.00 40.29 5.18
3322 6951 0.897621 AGTCATGATGGACACAGCGA 59.102 50.000 0.00 0.00 40.29 4.93
3323 6952 1.483827 AGTCATGATGGACACAGCGAT 59.516 47.619 0.00 0.00 40.29 4.58
3324 6953 2.093288 AGTCATGATGGACACAGCGATT 60.093 45.455 0.00 0.00 40.29 3.34
3325 6954 2.286294 GTCATGATGGACACAGCGATTC 59.714 50.000 0.00 0.00 37.73 2.52
3326 6955 1.259770 CATGATGGACACAGCGATTCG 59.740 52.381 0.62 0.62 35.27 3.34
3327 6956 0.460109 TGATGGACACAGCGATTCGG 60.460 55.000 8.34 0.00 35.27 4.30
3328 6957 0.460284 GATGGACACAGCGATTCGGT 60.460 55.000 4.68 4.68 38.40 4.69
3341 6970 2.359975 TCGGTGCTCGAGCTCAGA 60.360 61.111 35.27 32.23 43.74 3.27
3342 6971 1.750780 TCGGTGCTCGAGCTCAGAT 60.751 57.895 35.27 0.00 43.74 2.90
3343 6972 1.588403 CGGTGCTCGAGCTCAGATG 60.588 63.158 35.27 19.14 42.43 2.90
3344 6973 1.882167 GGTGCTCGAGCTCAGATGC 60.882 63.158 35.27 16.38 42.66 3.91
3351 6980 4.040645 AGCTCAGATGCTCCCGAA 57.959 55.556 0.00 0.00 39.34 4.30
3352 6981 2.290847 AGCTCAGATGCTCCCGAAA 58.709 52.632 0.00 0.00 39.34 3.46
3353 6982 0.835941 AGCTCAGATGCTCCCGAAAT 59.164 50.000 0.00 0.00 39.34 2.17
3354 6983 1.202627 AGCTCAGATGCTCCCGAAATC 60.203 52.381 0.00 0.00 39.34 2.17
3355 6984 1.473965 GCTCAGATGCTCCCGAAATCA 60.474 52.381 0.00 0.00 0.00 2.57
3356 6985 2.208431 CTCAGATGCTCCCGAAATCAC 58.792 52.381 0.00 0.00 0.00 3.06
3357 6986 1.833630 TCAGATGCTCCCGAAATCACT 59.166 47.619 0.00 0.00 0.00 3.41
3358 6987 1.938577 CAGATGCTCCCGAAATCACTG 59.061 52.381 0.00 0.00 0.00 3.66
3359 6988 1.556911 AGATGCTCCCGAAATCACTGT 59.443 47.619 0.00 0.00 0.00 3.55
3360 6989 1.936547 GATGCTCCCGAAATCACTGTC 59.063 52.381 0.00 0.00 0.00 3.51
3361 6990 0.389817 TGCTCCCGAAATCACTGTCG 60.390 55.000 0.00 0.00 37.01 4.35
3362 6991 0.389948 GCTCCCGAAATCACTGTCGT 60.390 55.000 0.00 0.00 35.48 4.34
3363 6992 1.630148 CTCCCGAAATCACTGTCGTC 58.370 55.000 0.00 0.00 35.48 4.20
3364 6993 0.245539 TCCCGAAATCACTGTCGTCC 59.754 55.000 0.00 0.00 35.48 4.79
3365 6994 1.076533 CCCGAAATCACTGTCGTCCG 61.077 60.000 0.00 0.00 35.48 4.79
3366 6995 0.388134 CCGAAATCACTGTCGTCCGT 60.388 55.000 0.00 0.00 35.48 4.69
3367 6996 1.415374 CGAAATCACTGTCGTCCGTT 58.585 50.000 0.00 0.00 32.61 4.44
3368 6997 1.385743 CGAAATCACTGTCGTCCGTTC 59.614 52.381 0.00 0.00 32.61 3.95
3369 6998 1.725164 GAAATCACTGTCGTCCGTTCC 59.275 52.381 0.00 0.00 0.00 3.62
3370 6999 0.966920 AATCACTGTCGTCCGTTCCT 59.033 50.000 0.00 0.00 0.00 3.36
3371 7000 0.243907 ATCACTGTCGTCCGTTCCTG 59.756 55.000 0.00 0.00 0.00 3.86
3372 7001 1.105167 TCACTGTCGTCCGTTCCTGT 61.105 55.000 0.00 0.00 0.00 4.00
3373 7002 0.663568 CACTGTCGTCCGTTCCTGTC 60.664 60.000 0.00 0.00 0.00 3.51
3374 7003 0.822532 ACTGTCGTCCGTTCCTGTCT 60.823 55.000 0.00 0.00 0.00 3.41
3375 7004 0.314302 CTGTCGTCCGTTCCTGTCTT 59.686 55.000 0.00 0.00 0.00 3.01
3376 7005 0.031585 TGTCGTCCGTTCCTGTCTTG 59.968 55.000 0.00 0.00 0.00 3.02
3377 7006 0.666577 GTCGTCCGTTCCTGTCTTGG 60.667 60.000 0.00 0.00 0.00 3.61
3378 7007 1.374252 CGTCCGTTCCTGTCTTGGG 60.374 63.158 0.00 0.00 0.00 4.12
3379 7008 1.812686 CGTCCGTTCCTGTCTTGGGA 61.813 60.000 0.00 0.00 0.00 4.37
3380 7009 0.613777 GTCCGTTCCTGTCTTGGGAT 59.386 55.000 0.00 0.00 32.41 3.85
3381 7010 0.902531 TCCGTTCCTGTCTTGGGATC 59.097 55.000 0.00 0.00 32.41 3.36
3382 7011 0.107654 CCGTTCCTGTCTTGGGATCC 60.108 60.000 1.92 1.92 32.41 3.36
3383 7012 0.107654 CGTTCCTGTCTTGGGATCCC 60.108 60.000 25.22 25.22 32.41 3.85
3384 7013 0.991920 GTTCCTGTCTTGGGATCCCA 59.008 55.000 30.62 30.62 45.63 4.37
3395 7024 3.824001 TGGGATCCCAACAATTCAGAA 57.176 42.857 32.09 2.52 44.12 3.02
3396 7025 4.335735 TGGGATCCCAACAATTCAGAAT 57.664 40.909 32.09 0.00 44.12 2.40
3397 7026 4.280819 TGGGATCCCAACAATTCAGAATC 58.719 43.478 32.09 0.00 44.12 2.52
3398 7027 3.316308 GGGATCCCAACAATTCAGAATCG 59.684 47.826 26.95 0.00 35.81 3.34
3399 7028 4.199310 GGATCCCAACAATTCAGAATCGA 58.801 43.478 0.00 0.00 0.00 3.59
3400 7029 4.640201 GGATCCCAACAATTCAGAATCGAA 59.360 41.667 0.00 0.00 0.00 3.71
3401 7030 5.300286 GGATCCCAACAATTCAGAATCGAAT 59.700 40.000 0.00 0.00 37.20 3.34
3402 7031 6.486657 GGATCCCAACAATTCAGAATCGAATA 59.513 38.462 0.00 0.00 34.49 1.75
3403 7032 7.175641 GGATCCCAACAATTCAGAATCGAATAT 59.824 37.037 0.00 0.00 34.49 1.28
3404 7033 7.880160 TCCCAACAATTCAGAATCGAATATT 57.120 32.000 0.00 0.00 34.49 1.28
3405 7034 7.930217 TCCCAACAATTCAGAATCGAATATTC 58.070 34.615 5.30 5.30 34.49 1.75
3416 7045 7.657354 TCAGAATCGAATATTCCGTTCATGAAT 59.343 33.333 12.12 0.00 36.46 2.57
3471 7100 1.953686 GTGCAGAAACAGTTTGCCCTA 59.046 47.619 2.34 0.00 37.03 3.53
3545 7174 6.610425 TCAGGATATCATATGATCCCACTGAG 59.390 42.308 26.27 16.02 42.38 3.35
3566 7195 4.088634 AGCTGAATTTATGAGGTGGCAAA 58.911 39.130 0.00 0.00 0.00 3.68
3605 7234 2.860735 GGCGACATAACTAACTGAGCAG 59.139 50.000 0.00 0.00 0.00 4.24
3614 7243 5.483685 AACTAACTGAGCAGTATTGACCA 57.516 39.130 3.21 0.00 41.58 4.02
3695 7324 3.513515 GGTGCCCAATGGAGAATAAAACA 59.486 43.478 0.00 0.00 0.00 2.83
3707 7336 6.432783 TGGAGAATAAAACATGGTTACTGGTG 59.567 38.462 0.00 0.00 0.00 4.17
3711 7340 0.608035 AACATGGTTACTGGTGCCCG 60.608 55.000 0.00 0.00 0.00 6.13
3760 7389 1.754380 ATTACCGCGGCCTCTGCATA 61.754 55.000 28.58 4.04 40.13 3.14
3762 7391 2.638330 TACCGCGGCCTCTGCATAAC 62.638 60.000 28.58 0.00 40.13 1.89
3783 7413 9.778993 CATAACAGGAGTTCATGAAATAAGTTG 57.221 33.333 20.73 14.16 39.15 3.16
3790 7420 6.672147 AGTTCATGAAATAAGTTGCAGACAC 58.328 36.000 10.35 0.00 0.00 3.67
3791 7421 5.627499 TCATGAAATAAGTTGCAGACACC 57.373 39.130 0.00 0.00 0.00 4.16
3792 7422 4.458989 TCATGAAATAAGTTGCAGACACCC 59.541 41.667 0.00 0.00 0.00 4.61
3793 7423 3.826524 TGAAATAAGTTGCAGACACCCA 58.173 40.909 0.00 0.00 0.00 4.51
3794 7424 3.820467 TGAAATAAGTTGCAGACACCCAG 59.180 43.478 0.00 0.00 0.00 4.45
3795 7425 3.508845 AATAAGTTGCAGACACCCAGT 57.491 42.857 0.00 0.00 0.00 4.00
3796 7426 3.508845 ATAAGTTGCAGACACCCAGTT 57.491 42.857 0.00 0.00 0.00 3.16
3797 7427 2.143876 AAGTTGCAGACACCCAGTTT 57.856 45.000 0.00 0.00 0.00 2.66
3798 7428 1.680338 AGTTGCAGACACCCAGTTTC 58.320 50.000 0.00 0.00 0.00 2.78
3799 7429 1.064758 AGTTGCAGACACCCAGTTTCA 60.065 47.619 0.00 0.00 0.00 2.69
3800 7430 1.334869 GTTGCAGACACCCAGTTTCAG 59.665 52.381 0.00 0.00 0.00 3.02
3801 7431 0.836606 TGCAGACACCCAGTTTCAGA 59.163 50.000 0.00 0.00 0.00 3.27
3802 7432 1.421268 TGCAGACACCCAGTTTCAGAT 59.579 47.619 0.00 0.00 0.00 2.90
3803 7433 2.637382 TGCAGACACCCAGTTTCAGATA 59.363 45.455 0.00 0.00 0.00 1.98
3804 7434 3.265791 GCAGACACCCAGTTTCAGATAG 58.734 50.000 0.00 0.00 0.00 2.08
3805 7435 3.307059 GCAGACACCCAGTTTCAGATAGT 60.307 47.826 0.00 0.00 0.00 2.12
3806 7436 4.081642 GCAGACACCCAGTTTCAGATAGTA 60.082 45.833 0.00 0.00 0.00 1.82
3807 7437 5.568825 GCAGACACCCAGTTTCAGATAGTAA 60.569 44.000 0.00 0.00 0.00 2.24
3808 7438 6.464222 CAGACACCCAGTTTCAGATAGTAAA 58.536 40.000 0.00 0.00 0.00 2.01
3809 7439 6.934645 CAGACACCCAGTTTCAGATAGTAAAA 59.065 38.462 0.00 0.00 0.00 1.52
3810 7440 6.935208 AGACACCCAGTTTCAGATAGTAAAAC 59.065 38.462 0.00 0.00 33.98 2.43
3811 7441 6.597562 ACACCCAGTTTCAGATAGTAAAACA 58.402 36.000 0.00 0.00 35.77 2.83
3812 7442 7.057894 ACACCCAGTTTCAGATAGTAAAACAA 58.942 34.615 0.00 0.00 35.77 2.83
3813 7443 7.558444 ACACCCAGTTTCAGATAGTAAAACAAA 59.442 33.333 0.00 0.00 35.77 2.83
3814 7444 8.576442 CACCCAGTTTCAGATAGTAAAACAAAT 58.424 33.333 0.00 0.00 35.77 2.32
3815 7445 9.143155 ACCCAGTTTCAGATAGTAAAACAAATT 57.857 29.630 0.00 0.00 35.77 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.387878 ACGAGCACGAGCAAGAGAAG 60.388 55.000 11.40 0.00 45.49 2.85
28 29 0.169230 AGTACGAGCACGAGCAAGAG 59.831 55.000 11.40 0.00 45.49 2.85
60 61 2.813908 GTGGAAGCCCTACGCGTG 60.814 66.667 24.59 11.90 44.76 5.34
61 62 4.078516 GGTGGAAGCCCTACGCGT 62.079 66.667 19.17 19.17 44.76 6.01
98 99 0.032403 ACGTGCCGTGCTACTTTGTA 59.968 50.000 0.00 0.00 39.18 2.41
118 119 6.155475 TCTTCTCTTTTAGATAGAGCTGGC 57.845 41.667 0.00 0.00 39.18 4.85
128 417 6.661377 TGCTAGCTCTCTTCTTCTCTTTTAGA 59.339 38.462 17.23 0.00 0.00 2.10
136 425 2.292192 ACCCTGCTAGCTCTCTTCTTCT 60.292 50.000 17.23 0.00 0.00 2.85
141 430 1.040339 CGGACCCTGCTAGCTCTCTT 61.040 60.000 17.23 0.00 0.00 2.85
147 436 1.757340 AGTACCGGACCCTGCTAGC 60.757 63.158 9.46 8.10 0.00 3.42
152 441 4.814294 GCGCAGTACCGGACCCTG 62.814 72.222 9.46 11.94 0.00 4.45
166 1705 1.060937 CATGCAGTTTAGACCGCGC 59.939 57.895 0.00 0.00 31.69 6.86
169 1708 0.035439 ACCCCATGCAGTTTAGACCG 60.035 55.000 0.00 0.00 0.00 4.79
170 1709 1.463674 CACCCCATGCAGTTTAGACC 58.536 55.000 0.00 0.00 0.00 3.85
182 1721 2.618185 ACCATGCCTCCACCCCAT 60.618 61.111 0.00 0.00 0.00 4.00
186 1766 0.962356 CACTTGACCATGCCTCCACC 60.962 60.000 0.00 0.00 0.00 4.61
240 1820 4.570663 GCACCCTCGGTCGATCGG 62.571 72.222 19.53 8.91 31.02 4.18
248 1828 0.244450 TTACTTACGTGCACCCTCGG 59.756 55.000 12.15 0.00 32.62 4.63
259 1839 6.620089 GCCTGGCTCTTTTACTTTTACTTACG 60.620 42.308 12.43 0.00 0.00 3.18
312 1896 1.633561 CTCAGCAACATCGTGATCGT 58.366 50.000 0.00 0.00 38.33 3.73
313 1897 0.926155 CCTCAGCAACATCGTGATCG 59.074 55.000 0.00 0.00 38.55 3.69
343 1941 1.598130 ACAACTGGAACTCTGCCGC 60.598 57.895 0.00 0.00 0.00 6.53
344 1942 0.532862 ACACAACTGGAACTCTGCCG 60.533 55.000 0.00 0.00 0.00 5.69
346 1944 3.378427 AGAAAACACAACTGGAACTCTGC 59.622 43.478 0.00 0.00 0.00 4.26
347 1945 5.567138 AAGAAAACACAACTGGAACTCTG 57.433 39.130 0.00 0.00 0.00 3.35
348 1946 6.318900 CCTAAAGAAAACACAACTGGAACTCT 59.681 38.462 0.00 0.00 0.00 3.24
355 1955 6.451064 AGAACCCTAAAGAAAACACAACTG 57.549 37.500 0.00 0.00 0.00 3.16
438 2038 0.528684 GAGTCTAGGACGGCATGCAC 60.529 60.000 21.36 10.00 37.67 4.57
450 2050 4.101898 TGCACTAGGAGTAGGAGAGTCTAG 59.898 50.000 0.00 0.00 0.00 2.43
451 2051 4.038633 TGCACTAGGAGTAGGAGAGTCTA 58.961 47.826 0.00 0.00 0.00 2.59
452 2052 2.847449 TGCACTAGGAGTAGGAGAGTCT 59.153 50.000 0.00 0.00 0.00 3.24
454 2054 2.681390 CGTGCACTAGGAGTAGGAGAGT 60.681 54.545 16.19 0.00 0.00 3.24
456 2056 2.017623 GCGTGCACTAGGAGTAGGAGA 61.018 57.143 16.19 0.00 0.00 3.71
457 2057 0.382515 GCGTGCACTAGGAGTAGGAG 59.617 60.000 16.19 0.00 0.00 3.69
459 2059 0.530744 TTGCGTGCACTAGGAGTAGG 59.469 55.000 16.19 0.00 0.00 3.18
460 2060 2.586258 ATTGCGTGCACTAGGAGTAG 57.414 50.000 16.19 0.00 0.00 2.57
461 2061 3.259064 GAAATTGCGTGCACTAGGAGTA 58.741 45.455 16.19 0.00 0.00 2.59
462 2062 2.076863 GAAATTGCGTGCACTAGGAGT 58.923 47.619 16.19 0.00 0.00 3.85
463 2063 1.398390 GGAAATTGCGTGCACTAGGAG 59.602 52.381 16.19 0.00 0.00 3.69
464 2064 1.448985 GGAAATTGCGTGCACTAGGA 58.551 50.000 16.19 0.00 0.00 2.94
522 2150 0.320421 ATTGCGTTGTCCAGCTACGT 60.320 50.000 7.72 0.00 45.46 3.57
547 2177 0.108585 TCTCTTTGCTGGTGGTGGTC 59.891 55.000 0.00 0.00 0.00 4.02
551 2181 1.131638 TCACTCTCTTTGCTGGTGGT 58.868 50.000 0.00 0.00 0.00 4.16
558 2188 4.092091 CGGAGTATTTGTCACTCTCTTTGC 59.908 45.833 2.81 0.00 41.78 3.68
625 2263 2.560981 TCTGAGCAAGTGTTCCATCGTA 59.439 45.455 0.00 0.00 0.00 3.43
640 2278 0.536006 ACCAACACCTTGCTCTGAGC 60.536 55.000 22.38 22.38 42.82 4.26
641 2279 1.605710 CAACCAACACCTTGCTCTGAG 59.394 52.381 0.00 0.00 0.00 3.35
642 2280 1.679139 CAACCAACACCTTGCTCTGA 58.321 50.000 0.00 0.00 0.00 3.27
643 2281 0.031178 GCAACCAACACCTTGCTCTG 59.969 55.000 0.00 0.00 39.79 3.35
644 2282 2.419057 GCAACCAACACCTTGCTCT 58.581 52.632 0.00 0.00 39.79 4.09
646 2284 4.684623 AGCAACCAACACCTTGCT 57.315 50.000 0.00 0.00 46.63 3.91
647 2285 1.604604 TCTAGCAACCAACACCTTGC 58.395 50.000 0.00 0.00 42.67 4.01
648 2286 6.515272 AATAATCTAGCAACCAACACCTTG 57.485 37.500 0.00 0.00 0.00 3.61
649 2287 8.823220 ATAAATAATCTAGCAACCAACACCTT 57.177 30.769 0.00 0.00 0.00 3.50
650 2288 8.823220 AATAAATAATCTAGCAACCAACACCT 57.177 30.769 0.00 0.00 0.00 4.00
663 2301 5.121142 GGGCGCGTGCTTAATAAATAATCTA 59.879 40.000 21.89 0.00 42.25 1.98
689 2327 2.434884 CATGCGTGAGGGCTTCGT 60.435 61.111 0.00 0.00 0.00 3.85
691 2329 3.512516 GCCATGCGTGAGGGCTTC 61.513 66.667 7.72 0.00 44.32 3.86
700 2338 0.894141 TTTTTAGCCATGCCATGCGT 59.106 45.000 0.00 0.00 0.00 5.24
719 2357 7.071824 CCTATAGGAAGGGAGAAACTGATTCTT 59.928 40.741 14.11 0.00 42.52 2.52
742 2381 4.594123 TTGAGTGTGATGTTCGTTCCTA 57.406 40.909 0.00 0.00 0.00 2.94
745 2384 5.510671 ACATTTTGAGTGTGATGTTCGTTC 58.489 37.500 0.00 0.00 28.88 3.95
753 2392 5.754890 GCCAAGAAAACATTTTGAGTGTGAT 59.245 36.000 0.00 0.00 0.00 3.06
779 2421 4.524053 CCTACCTTTTCTCGGGCTAATTT 58.476 43.478 0.00 0.00 0.00 1.82
813 2455 7.921786 TCTTGGATTTGTTGTAGGTGATTAG 57.078 36.000 0.00 0.00 0.00 1.73
820 2462 6.805713 AGTTTGTTCTTGGATTTGTTGTAGG 58.194 36.000 0.00 0.00 0.00 3.18
821 2463 8.621286 AGTAGTTTGTTCTTGGATTTGTTGTAG 58.379 33.333 0.00 0.00 0.00 2.74
822 2464 8.402472 CAGTAGTTTGTTCTTGGATTTGTTGTA 58.598 33.333 0.00 0.00 0.00 2.41
825 2467 7.339466 AGACAGTAGTTTGTTCTTGGATTTGTT 59.661 33.333 0.00 0.00 0.00 2.83
826 2468 6.828785 AGACAGTAGTTTGTTCTTGGATTTGT 59.171 34.615 0.00 0.00 0.00 2.83
827 2469 7.264373 AGACAGTAGTTTGTTCTTGGATTTG 57.736 36.000 0.00 0.00 0.00 2.32
828 2470 7.881775 AAGACAGTAGTTTGTTCTTGGATTT 57.118 32.000 0.00 0.00 0.00 2.17
829 2471 7.881775 AAAGACAGTAGTTTGTTCTTGGATT 57.118 32.000 0.00 0.00 0.00 3.01
830 2472 7.682021 GCAAAAGACAGTAGTTTGTTCTTGGAT 60.682 37.037 9.22 0.00 35.22 3.41
831 2473 6.404293 GCAAAAGACAGTAGTTTGTTCTTGGA 60.404 38.462 9.22 0.00 35.22 3.53
832 2474 5.743872 GCAAAAGACAGTAGTTTGTTCTTGG 59.256 40.000 9.22 0.00 35.22 3.61
833 2475 5.452302 CGCAAAAGACAGTAGTTTGTTCTTG 59.548 40.000 9.22 0.00 35.22 3.02
839 2481 3.963383 ACCGCAAAAGACAGTAGTTTG 57.037 42.857 4.64 4.64 35.74 2.93
844 2486 2.409975 GCTGTACCGCAAAAGACAGTA 58.590 47.619 4.19 0.00 41.14 2.74
846 2488 0.517316 GGCTGTACCGCAAAAGACAG 59.483 55.000 11.58 0.00 41.82 3.51
848 2490 0.517316 CTGGCTGTACCGCAAAAGAC 59.483 55.000 11.58 0.00 43.94 3.01
855 2497 0.391130 TCATTGACTGGCTGTACCGC 60.391 55.000 0.00 0.00 43.94 5.68
857 2499 1.373570 GCTCATTGACTGGCTGTACC 58.626 55.000 0.00 0.00 39.84 3.34
919 2562 2.322658 TGGTCGGTTTCTAGAGTTGGT 58.677 47.619 0.00 0.00 0.00 3.67
947 2590 1.734477 CCTCGAACTCGTGTGCTGG 60.734 63.158 0.00 0.00 40.80 4.85
953 2596 2.978489 GTTTGTCTACCTCGAACTCGTG 59.022 50.000 0.00 0.00 40.80 4.35
958 2610 1.066136 GGCGTTTGTCTACCTCGAAC 58.934 55.000 0.00 0.00 0.00 3.95
962 2614 0.524862 TCGAGGCGTTTGTCTACCTC 59.475 55.000 0.00 0.00 44.37 3.85
965 2617 1.467734 TCTCTCGAGGCGTTTGTCTAC 59.532 52.381 13.56 0.00 0.00 2.59
976 2628 1.748493 CTCCCTGTCTTTCTCTCGAGG 59.252 57.143 13.56 3.44 0.00 4.63
980 2632 4.502962 CATGTTCTCCCTGTCTTTCTCTC 58.497 47.826 0.00 0.00 0.00 3.20
1389 3047 4.569180 CAATCCGGGATGGGCGCT 62.569 66.667 10.96 0.00 38.76 5.92
1485 3186 4.986659 CAGAGAAAAACCTTTGCCATCTTG 59.013 41.667 0.00 0.00 0.00 3.02
1496 3197 2.689983 CCACAACAGCAGAGAAAAACCT 59.310 45.455 0.00 0.00 0.00 3.50
1498 3199 2.159254 TGCCACAACAGCAGAGAAAAAC 60.159 45.455 0.00 0.00 34.69 2.43
1499 3200 2.098614 TGCCACAACAGCAGAGAAAAA 58.901 42.857 0.00 0.00 34.69 1.94
1584 3390 9.698309 CCAACCAAAAATGTTTAAAACCTTTTT 57.302 25.926 0.00 0.00 44.45 1.94
1589 3395 5.267009 CGCCAACCAAAAATGTTTAAAACC 58.733 37.500 0.00 0.00 0.00 3.27
1591 3397 4.394920 TGCGCCAACCAAAAATGTTTAAAA 59.605 33.333 4.18 0.00 0.00 1.52
1592 3398 3.938963 TGCGCCAACCAAAAATGTTTAAA 59.061 34.783 4.18 0.00 0.00 1.52
1593 3399 3.531538 TGCGCCAACCAAAAATGTTTAA 58.468 36.364 4.18 0.00 0.00 1.52
1594 3400 3.126831 CTGCGCCAACCAAAAATGTTTA 58.873 40.909 4.18 0.00 0.00 2.01
1599 3843 1.039856 AGACTGCGCCAACCAAAAAT 58.960 45.000 4.18 0.00 0.00 1.82
1610 3855 5.631026 TCTTTCATCAAATTTAGACTGCGC 58.369 37.500 0.00 0.00 0.00 6.09
1611 3856 7.269937 CAGTTCTTTCATCAAATTTAGACTGCG 59.730 37.037 0.00 0.00 0.00 5.18
1637 3902 8.682936 TCCTCCTTCTATATGCTGAAAATTTC 57.317 34.615 0.00 0.00 0.00 2.17
1641 3906 7.227156 GGATTCCTCCTTCTATATGCTGAAAA 58.773 38.462 0.00 0.00 38.65 2.29
1645 3910 4.782156 AGGGATTCCTCCTTCTATATGCTG 59.218 45.833 2.01 0.00 39.80 4.41
1647 3912 4.080638 CCAGGGATTCCTCCTTCTATATGC 60.081 50.000 2.01 0.00 42.67 3.14
1648 3913 5.345418 TCCAGGGATTCCTCCTTCTATATG 58.655 45.833 2.01 0.00 42.67 1.78
1650 3915 5.434003 TTCCAGGGATTCCTCCTTCTATA 57.566 43.478 2.01 0.00 42.67 1.31
1657 3922 3.026694 CAACAATTCCAGGGATTCCTCC 58.973 50.000 2.01 0.00 42.67 4.30
1658 3923 2.428530 GCAACAATTCCAGGGATTCCTC 59.571 50.000 2.01 0.00 42.67 3.71
1659 3924 2.460669 GCAACAATTCCAGGGATTCCT 58.539 47.619 2.01 0.00 46.26 3.36
1660 3925 1.482182 GGCAACAATTCCAGGGATTCC 59.518 52.381 0.00 0.00 0.00 3.01
1661 3926 2.428530 GAGGCAACAATTCCAGGGATTC 59.571 50.000 0.00 0.00 41.41 2.52
1662 3927 2.460669 GAGGCAACAATTCCAGGGATT 58.539 47.619 0.00 0.00 41.41 3.01
1663 3928 1.683011 CGAGGCAACAATTCCAGGGAT 60.683 52.381 0.00 0.00 41.41 3.85
1664 3929 0.322456 CGAGGCAACAATTCCAGGGA 60.322 55.000 0.00 0.00 41.41 4.20
1665 3930 0.609131 ACGAGGCAACAATTCCAGGG 60.609 55.000 0.00 0.00 41.41 4.45
1666 3931 2.009774 CTACGAGGCAACAATTCCAGG 58.990 52.381 0.00 0.00 41.41 4.45
1667 3932 2.416547 CACTACGAGGCAACAATTCCAG 59.583 50.000 0.00 0.00 41.41 3.86
1668 3933 2.422597 CACTACGAGGCAACAATTCCA 58.577 47.619 0.00 0.00 41.41 3.53
1669 3934 1.737793 CCACTACGAGGCAACAATTCC 59.262 52.381 0.00 0.00 41.41 3.01
1670 3935 2.415512 GTCCACTACGAGGCAACAATTC 59.584 50.000 0.00 0.00 41.41 2.17
1671 3936 2.423577 GTCCACTACGAGGCAACAATT 58.576 47.619 0.00 0.00 41.41 2.32
1672 3937 2.094762 GTCCACTACGAGGCAACAAT 57.905 50.000 0.00 0.00 41.41 2.71
1673 3938 3.599412 GTCCACTACGAGGCAACAA 57.401 52.632 0.00 0.00 41.41 2.83
1683 3948 1.058695 CGCAATCGAAACGTCCACTAC 59.941 52.381 0.00 0.00 38.10 2.73
1684 3949 1.068402 TCGCAATCGAAACGTCCACTA 60.068 47.619 0.00 0.00 42.44 2.74
1685 3950 0.319211 TCGCAATCGAAACGTCCACT 60.319 50.000 0.00 0.00 42.44 4.00
1686 3951 0.093026 CTCGCAATCGAAACGTCCAC 59.907 55.000 0.00 0.00 44.98 4.02
1687 3952 1.623081 GCTCGCAATCGAAACGTCCA 61.623 55.000 0.00 0.00 44.98 4.02
1688 3953 1.058903 GCTCGCAATCGAAACGTCC 59.941 57.895 0.00 0.00 44.98 4.79
1689 3954 1.295220 CGCTCGCAATCGAAACGTC 60.295 57.895 0.00 0.00 44.98 4.34
1690 3955 2.769617 CGCTCGCAATCGAAACGT 59.230 55.556 0.00 0.00 44.98 3.99
1691 3956 2.641663 GCGCTCGCAATCGAAACG 60.642 61.111 9.59 0.00 44.98 3.60
1692 3957 1.418342 TAGGCGCTCGCAATCGAAAC 61.418 55.000 16.36 0.00 44.98 2.78
1693 3958 1.153726 TAGGCGCTCGCAATCGAAA 60.154 52.632 16.36 0.00 44.98 3.46
1694 3959 1.876714 GTAGGCGCTCGCAATCGAA 60.877 57.895 16.36 0.00 44.98 3.71
1695 3960 2.278596 GTAGGCGCTCGCAATCGA 60.279 61.111 16.36 0.00 44.11 3.59
1696 3961 2.580470 CTGTAGGCGCTCGCAATCG 61.580 63.158 16.36 0.00 44.11 3.34
1697 3962 2.875786 GCTGTAGGCGCTCGCAATC 61.876 63.158 16.36 5.85 44.11 2.67
1698 3963 2.892425 GCTGTAGGCGCTCGCAAT 60.892 61.111 16.36 6.53 44.11 3.56
1717 3982 4.041840 GCTCAAGCATTCCAGGGAAACC 62.042 54.545 4.63 0.00 46.84 3.27
1718 3983 1.203287 GCTCAAGCATTCCAGGGAAAC 59.797 52.381 4.63 0.81 41.59 2.78
1719 3984 1.076024 AGCTCAAGCATTCCAGGGAAA 59.924 47.619 4.63 0.00 45.16 3.13
1720 3985 0.700564 AGCTCAAGCATTCCAGGGAA 59.299 50.000 2.75 2.75 45.16 3.97
1721 3986 0.254178 GAGCTCAAGCATTCCAGGGA 59.746 55.000 9.40 0.00 45.16 4.20
1722 3987 1.094073 CGAGCTCAAGCATTCCAGGG 61.094 60.000 15.40 0.00 45.16 4.45
1723 3988 1.712977 GCGAGCTCAAGCATTCCAGG 61.713 60.000 15.40 0.00 45.16 4.45
1724 3989 0.743701 AGCGAGCTCAAGCATTCCAG 60.744 55.000 15.40 0.00 45.16 3.86
1725 3990 1.022982 CAGCGAGCTCAAGCATTCCA 61.023 55.000 15.40 0.00 45.16 3.53
1726 3991 1.023513 ACAGCGAGCTCAAGCATTCC 61.024 55.000 15.40 0.00 45.16 3.01
1727 3992 0.801251 AACAGCGAGCTCAAGCATTC 59.199 50.000 15.40 0.00 45.16 2.67
1728 3993 1.198637 GAAACAGCGAGCTCAAGCATT 59.801 47.619 15.40 5.99 45.16 3.56
1729 3994 0.801251 GAAACAGCGAGCTCAAGCAT 59.199 50.000 15.40 0.00 45.16 3.79
1730 3995 1.230635 GGAAACAGCGAGCTCAAGCA 61.231 55.000 15.40 0.00 45.16 3.91
1731 3996 1.499502 GGAAACAGCGAGCTCAAGC 59.500 57.895 15.40 10.11 42.49 4.01
1732 3997 0.321122 AGGGAAACAGCGAGCTCAAG 60.321 55.000 15.40 4.99 0.00 3.02
1733 3998 0.108585 AAGGGAAACAGCGAGCTCAA 59.891 50.000 15.40 0.00 0.00 3.02
1734 3999 0.108585 AAAGGGAAACAGCGAGCTCA 59.891 50.000 15.40 0.00 0.00 4.26
1735 4000 0.799393 GAAAGGGAAACAGCGAGCTC 59.201 55.000 2.73 2.73 0.00 4.09
1736 4001 0.606673 GGAAAGGGAAACAGCGAGCT 60.607 55.000 0.00 0.00 0.00 4.09
1737 4002 1.587043 GGGAAAGGGAAACAGCGAGC 61.587 60.000 0.00 0.00 0.00 5.03
1738 4003 0.036875 AGGGAAAGGGAAACAGCGAG 59.963 55.000 0.00 0.00 0.00 5.03
1739 4004 0.476771 AAGGGAAAGGGAAACAGCGA 59.523 50.000 0.00 0.00 0.00 4.93
1740 4005 1.328279 AAAGGGAAAGGGAAACAGCG 58.672 50.000 0.00 0.00 0.00 5.18
1741 4006 3.728845 GAAAAAGGGAAAGGGAAACAGC 58.271 45.455 0.00 0.00 0.00 4.40
1742 4007 3.383505 ACGAAAAAGGGAAAGGGAAACAG 59.616 43.478 0.00 0.00 0.00 3.16
1743 4008 3.367321 ACGAAAAAGGGAAAGGGAAACA 58.633 40.909 0.00 0.00 0.00 2.83
1744 4009 4.395959 AACGAAAAAGGGAAAGGGAAAC 57.604 40.909 0.00 0.00 0.00 2.78
1745 4010 4.440387 CGAAACGAAAAAGGGAAAGGGAAA 60.440 41.667 0.00 0.00 0.00 3.13
1746 4011 3.067040 CGAAACGAAAAAGGGAAAGGGAA 59.933 43.478 0.00 0.00 0.00 3.97
1747 4012 2.619646 CGAAACGAAAAAGGGAAAGGGA 59.380 45.455 0.00 0.00 0.00 4.20
1748 4013 2.619646 TCGAAACGAAAAAGGGAAAGGG 59.380 45.455 0.00 0.00 31.06 3.95
1749 4014 3.314357 AGTCGAAACGAAAAAGGGAAAGG 59.686 43.478 0.00 0.00 37.72 3.11
1750 4015 4.279659 CAGTCGAAACGAAAAAGGGAAAG 58.720 43.478 0.00 0.00 37.72 2.62
1751 4016 3.065648 CCAGTCGAAACGAAAAAGGGAAA 59.934 43.478 0.00 0.00 37.72 3.13
1752 4017 2.614983 CCAGTCGAAACGAAAAAGGGAA 59.385 45.455 0.00 0.00 37.72 3.97
1753 4018 2.158928 TCCAGTCGAAACGAAAAAGGGA 60.159 45.455 0.00 0.00 37.72 4.20
1754 4019 2.032290 GTCCAGTCGAAACGAAAAAGGG 60.032 50.000 0.00 0.00 37.72 3.95
1755 4020 2.032290 GGTCCAGTCGAAACGAAAAAGG 60.032 50.000 0.00 0.00 37.72 3.11
1756 4021 2.870411 AGGTCCAGTCGAAACGAAAAAG 59.130 45.455 0.00 0.00 37.72 2.27
1757 4022 2.908916 AGGTCCAGTCGAAACGAAAAA 58.091 42.857 0.00 0.00 37.72 1.94
1758 4023 2.607631 AGGTCCAGTCGAAACGAAAA 57.392 45.000 0.00 0.00 37.72 2.29
1759 4024 2.607631 AAGGTCCAGTCGAAACGAAA 57.392 45.000 0.00 0.00 37.72 3.46
1760 4025 3.947910 ATAAGGTCCAGTCGAAACGAA 57.052 42.857 0.00 0.00 37.72 3.85
1761 4026 3.671433 CGAATAAGGTCCAGTCGAAACGA 60.671 47.826 0.00 0.00 35.66 3.85
1762 4027 2.597305 CGAATAAGGTCCAGTCGAAACG 59.403 50.000 0.00 0.00 35.66 3.60
1763 4028 3.582780 ACGAATAAGGTCCAGTCGAAAC 58.417 45.455 6.11 0.00 37.00 2.78
1764 4029 3.947910 ACGAATAAGGTCCAGTCGAAA 57.052 42.857 6.11 0.00 37.00 3.46
1765 4030 5.587388 AATACGAATAAGGTCCAGTCGAA 57.413 39.130 6.11 0.00 37.00 3.71
1766 4031 5.450965 GGAAATACGAATAAGGTCCAGTCGA 60.451 44.000 6.11 0.00 37.00 4.20
1767 4032 4.743644 GGAAATACGAATAAGGTCCAGTCG 59.256 45.833 0.00 0.00 39.24 4.18
1768 4033 4.743644 CGGAAATACGAATAAGGTCCAGTC 59.256 45.833 0.00 0.00 35.47 3.51
1769 4034 4.161001 ACGGAAATACGAATAAGGTCCAGT 59.839 41.667 0.00 0.00 37.61 4.00
1770 4035 4.690122 ACGGAAATACGAATAAGGTCCAG 58.310 43.478 0.00 0.00 37.61 3.86
1771 4036 4.741321 ACGGAAATACGAATAAGGTCCA 57.259 40.909 0.00 0.00 37.61 4.02
1772 4037 7.719778 AATAACGGAAATACGAATAAGGTCC 57.280 36.000 0.00 0.00 37.61 4.46
1773 4038 9.992910 AAAAATAACGGAAATACGAATAAGGTC 57.007 29.630 0.00 0.00 37.61 3.85
1787 4052 8.697292 CCCCTTTCCATTATAAAAATAACGGAA 58.303 33.333 2.45 2.45 36.81 4.30
1788 4053 8.060075 TCCCCTTTCCATTATAAAAATAACGGA 58.940 33.333 0.00 0.00 0.00 4.69
1789 4054 8.139350 GTCCCCTTTCCATTATAAAAATAACGG 58.861 37.037 0.00 0.00 0.00 4.44
1790 4055 8.909923 AGTCCCCTTTCCATTATAAAAATAACG 58.090 33.333 0.00 0.00 0.00 3.18
1793 4058 9.582648 GCTAGTCCCCTTTCCATTATAAAAATA 57.417 33.333 0.00 0.00 0.00 1.40
1794 4059 7.509318 GGCTAGTCCCCTTTCCATTATAAAAAT 59.491 37.037 0.00 0.00 0.00 1.82
1795 4060 6.837048 GGCTAGTCCCCTTTCCATTATAAAAA 59.163 38.462 0.00 0.00 0.00 1.94
1796 4061 6.370453 GGCTAGTCCCCTTTCCATTATAAAA 58.630 40.000 0.00 0.00 0.00 1.52
1797 4062 5.948842 GGCTAGTCCCCTTTCCATTATAAA 58.051 41.667 0.00 0.00 0.00 1.40
1798 4063 5.578157 GGCTAGTCCCCTTTCCATTATAA 57.422 43.478 0.00 0.00 0.00 0.98
1812 4077 2.118313 TTTTTAAGCCGGGCTAGTCC 57.882 50.000 24.16 2.21 38.25 3.85
1846 4111 8.055181 TCAATGCTAGTATTGATTCCTCCTTTT 58.945 33.333 26.50 0.00 40.95 2.27
1847 4112 7.577303 TCAATGCTAGTATTGATTCCTCCTTT 58.423 34.615 26.50 0.00 40.95 3.11
1848 4113 7.141758 TCAATGCTAGTATTGATTCCTCCTT 57.858 36.000 26.50 0.00 40.95 3.36
1849 4114 6.328672 ACTCAATGCTAGTATTGATTCCTCCT 59.671 38.462 29.12 9.35 43.80 3.69
1850 4115 6.529220 ACTCAATGCTAGTATTGATTCCTCC 58.471 40.000 29.12 0.00 43.80 4.30
1851 4116 8.364142 AGTACTCAATGCTAGTATTGATTCCTC 58.636 37.037 29.12 18.91 43.80 3.71
1852 4117 8.256356 AGTACTCAATGCTAGTATTGATTCCT 57.744 34.615 29.12 19.96 43.80 3.36
1853 4118 8.364142 AGAGTACTCAATGCTAGTATTGATTCC 58.636 37.037 29.12 18.38 43.80 3.01
1856 4121 9.581289 ACTAGAGTACTCAATGCTAGTATTGAT 57.419 33.333 29.12 21.95 43.80 2.57
1857 4122 8.982091 ACTAGAGTACTCAATGCTAGTATTGA 57.018 34.615 27.75 27.75 42.93 2.57
1861 4126 8.438373 ACCATACTAGAGTACTCAATGCTAGTA 58.562 37.037 24.44 22.82 44.21 1.82
1862 4127 7.291566 ACCATACTAGAGTACTCAATGCTAGT 58.708 38.462 24.44 21.63 42.92 2.57
1863 4128 7.753309 ACCATACTAGAGTACTCAATGCTAG 57.247 40.000 24.44 17.57 35.76 3.42
1864 4129 7.041303 CGAACCATACTAGAGTACTCAATGCTA 60.041 40.741 24.44 7.09 32.72 3.49
1865 4130 6.238786 CGAACCATACTAGAGTACTCAATGCT 60.239 42.308 24.44 6.24 32.72 3.79
1866 4131 5.915758 CGAACCATACTAGAGTACTCAATGC 59.084 44.000 24.44 8.78 32.72 3.56
1867 4132 6.262496 TCCGAACCATACTAGAGTACTCAATG 59.738 42.308 24.44 18.93 32.72 2.82
1868 4133 6.363065 TCCGAACCATACTAGAGTACTCAAT 58.637 40.000 24.44 11.56 32.72 2.57
1869 4134 5.748402 TCCGAACCATACTAGAGTACTCAA 58.252 41.667 24.44 7.58 32.72 3.02
1870 4135 5.363562 TCCGAACCATACTAGAGTACTCA 57.636 43.478 24.44 9.82 32.72 3.41
1871 4136 5.996513 TCATCCGAACCATACTAGAGTACTC 59.003 44.000 15.41 15.41 32.72 2.59
1872 4137 5.938279 TCATCCGAACCATACTAGAGTACT 58.062 41.667 0.00 0.00 32.72 2.73
1873 4138 5.764192 ACTCATCCGAACCATACTAGAGTAC 59.236 44.000 0.00 0.00 32.58 2.73
1874 4139 5.763698 CACTCATCCGAACCATACTAGAGTA 59.236 44.000 0.00 0.00 33.01 2.59
1875 4140 4.580995 CACTCATCCGAACCATACTAGAGT 59.419 45.833 0.00 0.00 34.45 3.24
1876 4141 4.822350 TCACTCATCCGAACCATACTAGAG 59.178 45.833 0.00 0.00 0.00 2.43
1877 4142 4.788679 TCACTCATCCGAACCATACTAGA 58.211 43.478 0.00 0.00 0.00 2.43
1878 4143 4.022762 CCTCACTCATCCGAACCATACTAG 60.023 50.000 0.00 0.00 0.00 2.57
1879 4144 3.889538 CCTCACTCATCCGAACCATACTA 59.110 47.826 0.00 0.00 0.00 1.82
1880 4145 2.695666 CCTCACTCATCCGAACCATACT 59.304 50.000 0.00 0.00 0.00 2.12
1881 4146 2.693591 TCCTCACTCATCCGAACCATAC 59.306 50.000 0.00 0.00 0.00 2.39
1882 4147 3.026707 TCCTCACTCATCCGAACCATA 57.973 47.619 0.00 0.00 0.00 2.74
1883 4148 1.866015 TCCTCACTCATCCGAACCAT 58.134 50.000 0.00 0.00 0.00 3.55
1884 4149 1.550524 CTTCCTCACTCATCCGAACCA 59.449 52.381 0.00 0.00 0.00 3.67
1885 4150 1.825474 TCTTCCTCACTCATCCGAACC 59.175 52.381 0.00 0.00 0.00 3.62
1886 4151 3.491792 GGATCTTCCTCACTCATCCGAAC 60.492 52.174 0.00 0.00 32.53 3.95
1887 4152 2.695666 GGATCTTCCTCACTCATCCGAA 59.304 50.000 0.00 0.00 32.53 4.30
1888 4153 2.311463 GGATCTTCCTCACTCATCCGA 58.689 52.381 0.00 0.00 32.53 4.55
1889 4154 1.342819 GGGATCTTCCTCACTCATCCG 59.657 57.143 0.00 0.00 36.57 4.18
1890 4155 2.402564 TGGGATCTTCCTCACTCATCC 58.597 52.381 0.00 0.00 36.57 3.51
1891 4156 3.432890 GGTTGGGATCTTCCTCACTCATC 60.433 52.174 0.00 0.00 36.57 2.92
1902 4167 2.840651 CTGGACTACAGGTTGGGATCTT 59.159 50.000 0.00 0.00 43.70 2.40
1921 4694 3.819188 GCTCGAATTCCAGCCCTG 58.181 61.111 13.51 0.00 0.00 4.45
2028 4802 5.530171 AGTTATACGAGTCGAGCCAATCTTA 59.470 40.000 21.50 0.00 0.00 2.10
2154 4935 7.589954 ACTCATGCGTTACAAGAAAATTACAAC 59.410 33.333 0.00 0.00 0.00 3.32
2205 4986 2.132996 CACAACCCAAGGCCAAGCA 61.133 57.895 5.01 0.00 0.00 3.91
2209 4990 4.514585 ACGCACAACCCAAGGCCA 62.515 61.111 5.01 0.00 0.00 5.36
2226 5007 3.006110 CACTAAACAACCTACGTCCCAGA 59.994 47.826 0.00 0.00 0.00 3.86
2234 5015 4.833390 AGATCAGCCACTAAACAACCTAC 58.167 43.478 0.00 0.00 0.00 3.18
2239 5020 6.321181 ACAAAGAAAGATCAGCCACTAAACAA 59.679 34.615 0.00 0.00 0.00 2.83
2263 5044 6.174720 TGATAGATCAACCACTCCCAATAC 57.825 41.667 0.00 0.00 33.08 1.89
2276 5058 6.598064 TCGTTAGGCTCGATATGATAGATCAA 59.402 38.462 0.00 0.00 34.95 2.57
2285 5067 8.467402 AATTTAAGATCGTTAGGCTCGATATG 57.533 34.615 10.62 0.00 45.90 1.78
2309 5141 1.000506 ACGAGTTGAGCCGAGCTTTAA 59.999 47.619 0.00 0.00 39.88 1.52
2410 5242 4.219944 GGGATGTGAGTGTGACTACAGTAA 59.780 45.833 0.00 0.00 40.50 2.24
2415 5247 1.899814 TGGGGATGTGAGTGTGACTAC 59.100 52.381 0.00 0.00 0.00 2.73
2416 5248 2.179427 CTGGGGATGTGAGTGTGACTA 58.821 52.381 0.00 0.00 0.00 2.59
2417 5249 0.979665 CTGGGGATGTGAGTGTGACT 59.020 55.000 0.00 0.00 0.00 3.41
2418 5250 0.687354 ACTGGGGATGTGAGTGTGAC 59.313 55.000 0.00 0.00 0.00 3.67
2419 5251 1.072173 CAACTGGGGATGTGAGTGTGA 59.928 52.381 0.00 0.00 0.00 3.58
2420 5252 1.527034 CAACTGGGGATGTGAGTGTG 58.473 55.000 0.00 0.00 0.00 3.82
2421 5253 0.250901 GCAACTGGGGATGTGAGTGT 60.251 55.000 0.00 0.00 0.00 3.55
2422 5254 0.250858 TGCAACTGGGGATGTGAGTG 60.251 55.000 0.00 0.00 0.00 3.51
2423 5255 0.478072 TTGCAACTGGGGATGTGAGT 59.522 50.000 0.00 0.00 0.00 3.41
2424 5256 1.619654 TTTGCAACTGGGGATGTGAG 58.380 50.000 0.00 0.00 0.00 3.51
2451 5288 4.040461 TCACCTTACTGAGTTCCCTTTCTG 59.960 45.833 0.00 0.00 0.00 3.02
2466 5303 4.602340 TGGAGAAGACAGTTCACCTTAC 57.398 45.455 3.40 0.00 31.64 2.34
2512 6018 2.990740 TTTTCTGTGGGGGCTATTGT 57.009 45.000 0.00 0.00 0.00 2.71
2618 6128 7.147983 TGGTTTTGTATGAAGGCATAATGGTAC 60.148 37.037 0.00 0.00 38.64 3.34
2621 6131 6.219417 TGGTTTTGTATGAAGGCATAATGG 57.781 37.500 0.00 0.00 38.64 3.16
2628 6138 2.558359 ACTGCTGGTTTTGTATGAAGGC 59.442 45.455 0.00 0.00 0.00 4.35
2629 6139 3.612479 GCACTGCTGGTTTTGTATGAAGG 60.612 47.826 0.00 0.00 0.00 3.46
2651 6161 3.624300 CTCCAGATGCTTCGCGCG 61.624 66.667 26.76 26.76 43.27 6.86
2652 6162 2.103042 AACTCCAGATGCTTCGCGC 61.103 57.895 0.00 0.00 39.77 6.86
2669 6179 8.910666 CGTAAATGAATAGCAAATCAAACACAA 58.089 29.630 0.00 0.00 0.00 3.33
2828 6407 1.757340 CCCTAGTCCCGACCTCCAC 60.757 68.421 0.00 0.00 0.00 4.02
2829 6408 1.932231 TCCCTAGTCCCGACCTCCA 60.932 63.158 0.00 0.00 0.00 3.86
2915 6512 5.620738 ATCTTAGAGCCATGTAAGCAGAA 57.379 39.130 0.00 0.00 33.38 3.02
3112 6722 2.546899 ACACCTAGTGACCATTGCCTA 58.453 47.619 0.96 0.00 36.96 3.93
3113 6723 1.362224 ACACCTAGTGACCATTGCCT 58.638 50.000 0.96 0.00 36.96 4.75
3114 6724 2.084546 GAACACCTAGTGACCATTGCC 58.915 52.381 0.96 0.00 36.96 4.52
3115 6725 3.059352 AGAACACCTAGTGACCATTGC 57.941 47.619 0.96 0.00 36.96 3.56
3116 6726 5.120208 CGTTTAGAACACCTAGTGACCATTG 59.880 44.000 0.96 0.00 36.96 2.82
3117 6727 5.221581 ACGTTTAGAACACCTAGTGACCATT 60.222 40.000 0.96 0.00 36.96 3.16
3118 6728 4.282703 ACGTTTAGAACACCTAGTGACCAT 59.717 41.667 0.96 0.00 36.96 3.55
3119 6729 3.638160 ACGTTTAGAACACCTAGTGACCA 59.362 43.478 0.96 0.00 36.96 4.02
3120 6730 3.985925 CACGTTTAGAACACCTAGTGACC 59.014 47.826 0.96 0.00 36.96 4.02
3121 6731 3.427863 GCACGTTTAGAACACCTAGTGAC 59.572 47.826 0.96 0.00 36.96 3.67
3122 6732 3.068448 TGCACGTTTAGAACACCTAGTGA 59.932 43.478 0.96 0.00 36.96 3.41
3123 6733 3.386486 TGCACGTTTAGAACACCTAGTG 58.614 45.455 0.00 0.00 39.75 2.74
3124 6734 3.738830 TGCACGTTTAGAACACCTAGT 57.261 42.857 0.00 0.00 0.00 2.57
3125 6735 4.056050 AGTTGCACGTTTAGAACACCTAG 58.944 43.478 0.00 0.00 0.00 3.02
3146 6759 1.034838 AGCACTAGCAGGTCTCCGAG 61.035 60.000 0.00 0.00 45.49 4.63
3185 6801 3.265791 CACAGTTGGAGCTCCTAATGAC 58.734 50.000 38.60 25.22 38.71 3.06
3209 6825 0.671781 AGCTCAACTTGGCGCAGTAG 60.672 55.000 10.83 5.33 0.00 2.57
3247 6863 5.183904 AGAACAAATCCATACTTGAGCCAAC 59.816 40.000 0.00 0.00 0.00 3.77
3306 6935 1.259770 CGAATCGCTGTGTCCATCATG 59.740 52.381 0.00 0.00 0.00 3.07
3307 6936 1.575244 CGAATCGCTGTGTCCATCAT 58.425 50.000 0.00 0.00 0.00 2.45
3308 6937 0.460109 CCGAATCGCTGTGTCCATCA 60.460 55.000 0.00 0.00 0.00 3.07
3309 6938 0.460284 ACCGAATCGCTGTGTCCATC 60.460 55.000 0.00 0.00 0.00 3.51
3311 6940 1.374125 CACCGAATCGCTGTGTCCA 60.374 57.895 0.00 0.00 0.00 4.02
3312 6941 2.740714 GCACCGAATCGCTGTGTCC 61.741 63.158 12.21 0.00 32.62 4.02
3314 6943 1.738099 GAGCACCGAATCGCTGTGT 60.738 57.895 12.21 0.00 38.99 3.72
3315 6944 2.792290 CGAGCACCGAATCGCTGTG 61.792 63.158 7.51 7.51 38.99 3.66
3316 6945 2.507102 CGAGCACCGAATCGCTGT 60.507 61.111 0.00 0.00 38.99 4.40
3317 6946 2.202610 TCGAGCACCGAATCGCTG 60.203 61.111 0.00 0.00 45.43 5.18
3324 6953 1.750780 ATCTGAGCTCGAGCACCGA 60.751 57.895 36.87 30.80 46.35 4.69
3325 6954 1.588403 CATCTGAGCTCGAGCACCG 60.588 63.158 36.87 26.94 45.16 4.94
3326 6955 1.882167 GCATCTGAGCTCGAGCACC 60.882 63.158 36.87 27.20 45.16 5.01
3327 6956 1.141449 AGCATCTGAGCTCGAGCAC 59.859 57.895 36.87 31.15 42.18 4.40
3328 6957 3.613527 AGCATCTGAGCTCGAGCA 58.386 55.556 36.87 18.69 42.18 4.26
3335 6964 1.224965 GATTTCGGGAGCATCTGAGC 58.775 55.000 0.00 0.00 33.73 4.26
3336 6965 2.158986 AGTGATTTCGGGAGCATCTGAG 60.159 50.000 0.00 0.00 33.73 3.35
3337 6966 1.833630 AGTGATTTCGGGAGCATCTGA 59.166 47.619 0.00 0.00 33.73 3.27
3338 6967 1.938577 CAGTGATTTCGGGAGCATCTG 59.061 52.381 0.00 0.00 33.73 2.90
3339 6968 1.556911 ACAGTGATTTCGGGAGCATCT 59.443 47.619 0.00 0.00 33.73 2.90
3340 6969 1.936547 GACAGTGATTTCGGGAGCATC 59.063 52.381 0.00 0.00 0.00 3.91
3341 6970 1.740380 CGACAGTGATTTCGGGAGCAT 60.740 52.381 0.00 0.00 0.00 3.79
3342 6971 0.389817 CGACAGTGATTTCGGGAGCA 60.390 55.000 0.00 0.00 0.00 4.26
3343 6972 0.389948 ACGACAGTGATTTCGGGAGC 60.390 55.000 0.00 0.00 39.63 4.70
3344 6973 1.630148 GACGACAGTGATTTCGGGAG 58.370 55.000 0.00 0.00 39.63 4.30
3345 6974 0.245539 GGACGACAGTGATTTCGGGA 59.754 55.000 0.00 0.00 39.63 5.14
3346 6975 1.076533 CGGACGACAGTGATTTCGGG 61.077 60.000 0.00 0.00 39.63 5.14
3347 6976 0.388134 ACGGACGACAGTGATTTCGG 60.388 55.000 0.00 0.00 39.63 4.30
3348 6977 1.385743 GAACGGACGACAGTGATTTCG 59.614 52.381 0.00 0.00 41.14 3.46
3349 6978 1.725164 GGAACGGACGACAGTGATTTC 59.275 52.381 0.00 0.00 0.00 2.17
3350 6979 1.343465 AGGAACGGACGACAGTGATTT 59.657 47.619 0.00 0.00 0.00 2.17
3351 6980 0.966920 AGGAACGGACGACAGTGATT 59.033 50.000 0.00 0.00 0.00 2.57
3352 6981 0.243907 CAGGAACGGACGACAGTGAT 59.756 55.000 0.00 0.00 0.00 3.06
3353 6982 1.105167 ACAGGAACGGACGACAGTGA 61.105 55.000 0.00 0.00 0.00 3.41
3354 6983 0.663568 GACAGGAACGGACGACAGTG 60.664 60.000 0.00 0.00 0.00 3.66
3355 6984 0.822532 AGACAGGAACGGACGACAGT 60.823 55.000 0.00 0.00 0.00 3.55
3356 6985 0.314302 AAGACAGGAACGGACGACAG 59.686 55.000 0.00 0.00 0.00 3.51
3357 6986 0.031585 CAAGACAGGAACGGACGACA 59.968 55.000 0.00 0.00 0.00 4.35
3358 6987 0.666577 CCAAGACAGGAACGGACGAC 60.667 60.000 0.00 0.00 0.00 4.34
3359 6988 1.663739 CCAAGACAGGAACGGACGA 59.336 57.895 0.00 0.00 0.00 4.20
3360 6989 1.374252 CCCAAGACAGGAACGGACG 60.374 63.158 0.00 0.00 0.00 4.79
3361 6990 0.613777 ATCCCAAGACAGGAACGGAC 59.386 55.000 0.00 0.00 36.85 4.79
3362 6991 0.902531 GATCCCAAGACAGGAACGGA 59.097 55.000 0.00 0.00 36.85 4.69
3363 6992 0.107654 GGATCCCAAGACAGGAACGG 60.108 60.000 0.00 0.00 36.85 4.44
3364 6993 0.107654 GGGATCCCAAGACAGGAACG 60.108 60.000 26.95 0.00 36.85 3.95
3365 6994 0.991920 TGGGATCCCAAGACAGGAAC 59.008 55.000 32.09 0.00 44.12 3.62
3366 6995 3.511552 TGGGATCCCAAGACAGGAA 57.488 52.632 32.09 3.98 44.12 3.36
3375 7004 3.824001 TTCTGAATTGTTGGGATCCCA 57.176 42.857 30.62 30.62 45.63 4.37
3376 7005 3.316308 CGATTCTGAATTGTTGGGATCCC 59.684 47.826 25.22 25.22 0.00 3.85
3377 7006 4.199310 TCGATTCTGAATTGTTGGGATCC 58.801 43.478 15.46 1.92 0.00 3.36
3378 7007 5.818136 TTCGATTCTGAATTGTTGGGATC 57.182 39.130 15.46 0.00 0.00 3.36
3379 7008 8.469309 AATATTCGATTCTGAATTGTTGGGAT 57.531 30.769 15.46 7.53 39.27 3.85
3380 7009 7.013274 GGAATATTCGATTCTGAATTGTTGGGA 59.987 37.037 15.46 0.00 39.27 4.37
3381 7010 7.141363 GGAATATTCGATTCTGAATTGTTGGG 58.859 38.462 15.46 0.00 39.27 4.12
3382 7011 6.852853 CGGAATATTCGATTCTGAATTGTTGG 59.147 38.462 15.46 0.40 39.27 3.77
3383 7012 7.409697 ACGGAATATTCGATTCTGAATTGTTG 58.590 34.615 15.46 2.95 39.27 3.33
3384 7013 7.553881 ACGGAATATTCGATTCTGAATTGTT 57.446 32.000 15.46 8.59 39.27 2.83
3385 7014 7.279981 TGAACGGAATATTCGATTCTGAATTGT 59.720 33.333 21.61 2.56 39.27 2.71
3386 7015 7.630026 TGAACGGAATATTCGATTCTGAATTG 58.370 34.615 21.61 10.78 39.27 2.32
3387 7016 7.786178 TGAACGGAATATTCGATTCTGAATT 57.214 32.000 21.61 0.00 39.27 2.17
3388 7017 7.657354 TCATGAACGGAATATTCGATTCTGAAT 59.343 33.333 21.61 1.81 41.32 2.57
3389 7018 6.983890 TCATGAACGGAATATTCGATTCTGAA 59.016 34.615 21.61 9.75 37.72 3.02
3390 7019 6.512297 TCATGAACGGAATATTCGATTCTGA 58.488 36.000 21.61 19.15 37.72 3.27
3391 7020 6.769608 TCATGAACGGAATATTCGATTCTG 57.230 37.500 21.61 17.96 39.60 3.02
3392 7021 7.969536 ATTCATGAACGGAATATTCGATTCT 57.030 32.000 21.61 11.11 33.40 2.40
3416 7045 8.518702 TGCAGTACAGCAAAATCAACAAATATA 58.481 29.630 10.89 0.00 42.46 0.86
3497 7126 2.620251 ACAGCAGACACAACTTGCTA 57.380 45.000 0.00 0.00 34.16 3.49
3545 7174 4.454728 TTTGCCACCTCATAAATTCAGC 57.545 40.909 0.00 0.00 0.00 4.26
3605 7234 4.351192 CGCTGCCTTATTTTGGTCAATAC 58.649 43.478 0.00 0.00 0.00 1.89
3614 7243 1.215423 AGGGATCCGCTGCCTTATTTT 59.785 47.619 5.45 0.00 44.73 1.82
3684 7313 6.322491 GCACCAGTAACCATGTTTTATTCTC 58.678 40.000 0.00 0.00 0.00 2.87
3729 7358 1.813786 CGCGGTAATCCCCTTTTCAAA 59.186 47.619 0.00 0.00 0.00 2.69
3730 7359 1.455248 CGCGGTAATCCCCTTTTCAA 58.545 50.000 0.00 0.00 0.00 2.69
3731 7360 0.393267 CCGCGGTAATCCCCTTTTCA 60.393 55.000 19.50 0.00 0.00 2.69
3732 7361 1.721664 GCCGCGGTAATCCCCTTTTC 61.722 60.000 28.70 0.08 0.00 2.29
3760 7389 6.265196 TGCAACTTATTTCATGAACTCCTGTT 59.735 34.615 7.89 7.32 39.42 3.16
3762 7391 6.149973 TCTGCAACTTATTTCATGAACTCCTG 59.850 38.462 7.89 2.71 0.00 3.86
3764 7393 6.072508 TGTCTGCAACTTATTTCATGAACTCC 60.073 38.462 7.89 0.00 0.00 3.85
3783 7413 2.191128 ATCTGAAACTGGGTGTCTGC 57.809 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.