Multiple sequence alignment - TraesCS3B01G428800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G428800 chr3B 100.000 2620 0 0 1 2620 667682393 667679774 0.000000e+00 4839.0
1 TraesCS3B01G428800 chr3B 82.973 693 58 28 757 1406 667645217 667644542 2.930000e-159 571.0
2 TraesCS3B01G428800 chr3B 85.550 436 33 17 1001 1406 667709474 667709039 1.860000e-116 429.0
3 TraesCS3B01G428800 chr3B 78.522 582 92 23 1531 2094 667707740 667707174 4.150000e-93 351.0
4 TraesCS3B01G428800 chr3B 77.959 245 40 5 324 555 667650608 667650365 9.780000e-30 141.0
5 TraesCS3B01G428800 chr3D 89.000 1000 76 18 1484 2466 505795004 505794022 0.000000e+00 1206.0
6 TraesCS3B01G428800 chr3D 93.750 656 37 2 754 1406 505982747 505982093 0.000000e+00 981.0
7 TraesCS3B01G428800 chr3D 93.082 477 24 3 977 1445 505795473 505794998 0.000000e+00 689.0
8 TraesCS3B01G428800 chr3D 82.861 706 52 31 757 1414 505780012 505779328 1.050000e-158 569.0
9 TraesCS3B01G428800 chr3D 86.481 466 22 25 982 1407 505999375 505998911 8.490000e-130 473.0
10 TraesCS3B01G428800 chr3D 87.089 426 38 3 323 731 505983711 505983286 1.420000e-127 466.0
11 TraesCS3B01G428800 chr3D 81.010 495 40 24 261 731 505801125 505800661 6.940000e-91 344.0
12 TraesCS3B01G428800 chr3D 95.337 193 9 0 58 250 378782677 378782485 9.110000e-80 307.0
13 TraesCS3B01G428800 chr3D 93.103 203 14 0 56 258 313278816 313279018 5.480000e-77 298.0
14 TraesCS3B01G428800 chr3D 91.667 216 16 2 44 257 384559361 384559576 5.480000e-77 298.0
15 TraesCS3B01G428800 chr3D 90.498 221 13 5 726 940 505795687 505795469 4.270000e-73 285.0
16 TraesCS3B01G428800 chr3D 80.409 342 49 14 1436 1771 505974117 505973788 7.240000e-61 244.0
17 TraesCS3B01G428800 chr3D 90.517 116 10 1 1507 1622 505997870 505997756 4.520000e-33 152.0
18 TraesCS3B01G428800 chr3D 100.000 35 0 0 254 288 505983873 505983839 6.050000e-07 65.8
19 TraesCS3B01G428800 chr3D 100.000 28 0 0 35 62 505801157 505801130 5.000000e-03 52.8
20 TraesCS3B01G428800 chr3A 93.750 720 33 9 735 1445 644623803 644623087 0.000000e+00 1070.0
21 TraesCS3B01G428800 chr3A 86.837 980 92 16 1507 2468 644623066 644622106 0.000000e+00 1061.0
22 TraesCS3B01G428800 chr3A 84.958 472 25 28 975 1406 644667675 644667210 1.110000e-118 436.0
23 TraesCS3B01G428800 chr3A 81.818 572 55 17 864 1406 644611043 644610492 4.000000e-118 435.0
24 TraesCS3B01G428800 chr3A 86.740 362 24 14 240 590 644624961 644624613 5.290000e-102 381.0
25 TraesCS3B01G428800 chr3A 75.496 857 155 42 1507 2335 644666653 644665824 4.120000e-98 368.0
26 TraesCS3B01G428800 chr6B 95.431 197 9 0 58 254 663866451 663866255 5.440000e-82 315.0
27 TraesCS3B01G428800 chr6B 94.156 154 7 2 2467 2619 508161471 508161623 1.570000e-57 233.0
28 TraesCS3B01G428800 chr7D 94.898 196 10 0 55 250 7524407 7524602 9.110000e-80 307.0
29 TraesCS3B01G428800 chr7D 93.590 156 8 2 2467 2620 126503703 126503858 5.640000e-57 231.0
30 TraesCS3B01G428800 chr1A 95.337 193 9 0 58 250 586372923 586372731 9.110000e-80 307.0
31 TraesCS3B01G428800 chr7A 94.872 195 10 0 56 250 521802178 521802372 3.280000e-79 305.0
32 TraesCS3B01G428800 chr4D 94.819 193 10 0 58 250 483990750 483990942 4.240000e-78 302.0
33 TraesCS3B01G428800 chr4B 92.647 204 15 0 55 258 580986601 580986398 7.090000e-76 294.0
34 TraesCS3B01G428800 chr1B 94.839 155 7 1 2467 2620 58755009 58755163 9.370000e-60 241.0
35 TraesCS3B01G428800 chr4A 94.771 153 7 1 2467 2618 697990142 697989990 1.210000e-58 237.0
36 TraesCS3B01G428800 chr2D 94.194 155 8 1 2467 2620 430224882 430225036 4.360000e-58 235.0
37 TraesCS3B01G428800 chr2B 94.194 155 8 1 2467 2620 67894081 67894235 4.360000e-58 235.0
38 TraesCS3B01G428800 chr6A 94.156 154 8 1 2468 2620 471163649 471163496 1.570000e-57 233.0
39 TraesCS3B01G428800 chr5A 92.025 163 9 4 2460 2620 46561227 46561067 2.620000e-55 226.0
40 TraesCS3B01G428800 chr1D 93.464 153 8 2 2467 2618 39864701 39864550 2.620000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G428800 chr3B 667679774 667682393 2619 True 4839.000000 4839 100.000 1 2620 1 chr3B.!!$R3 2619
1 TraesCS3B01G428800 chr3B 667644542 667645217 675 True 571.000000 571 82.973 757 1406 1 chr3B.!!$R1 649
2 TraesCS3B01G428800 chr3B 667707174 667709474 2300 True 390.000000 429 82.036 1001 2094 2 chr3B.!!$R4 1093
3 TraesCS3B01G428800 chr3D 505794022 505795687 1665 True 726.666667 1206 90.860 726 2466 3 chr3D.!!$R4 1740
4 TraesCS3B01G428800 chr3D 505779328 505780012 684 True 569.000000 569 82.861 757 1414 1 chr3D.!!$R2 657
5 TraesCS3B01G428800 chr3D 505982093 505983873 1780 True 504.266667 981 93.613 254 1406 3 chr3D.!!$R6 1152
6 TraesCS3B01G428800 chr3D 505997756 505999375 1619 True 312.500000 473 88.499 982 1622 2 chr3D.!!$R7 640
7 TraesCS3B01G428800 chr3A 644622106 644624961 2855 True 837.333333 1070 89.109 240 2468 3 chr3A.!!$R2 2228
8 TraesCS3B01G428800 chr3A 644610492 644611043 551 True 435.000000 435 81.818 864 1406 1 chr3A.!!$R1 542
9 TraesCS3B01G428800 chr3A 644665824 644667675 1851 True 402.000000 436 80.227 975 2335 2 chr3A.!!$R3 1360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 2278 0.031178 CAGCAAGCAAACCACAGACC 59.969 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 5786 1.000618 TCGCATGAAAATTGGCAAGCA 59.999 42.857 5.96 1.74 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.203998 AGTGGGAGTGGGAGTGGG 60.204 66.667 0.00 0.00 0.00 4.61
19 20 2.203938 GTGGGAGTGGGAGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
20 21 2.122729 TGGGAGTGGGAGTGGGAG 59.877 66.667 0.00 0.00 0.00 4.30
21 22 2.122954 GGGAGTGGGAGTGGGAGT 59.877 66.667 0.00 0.00 0.00 3.85
22 23 2.294078 GGGAGTGGGAGTGGGAGTG 61.294 68.421 0.00 0.00 0.00 3.51
23 24 1.229209 GGAGTGGGAGTGGGAGTGA 60.229 63.158 0.00 0.00 0.00 3.41
24 25 0.618968 GGAGTGGGAGTGGGAGTGAT 60.619 60.000 0.00 0.00 0.00 3.06
25 26 0.539051 GAGTGGGAGTGGGAGTGATG 59.461 60.000 0.00 0.00 0.00 3.07
26 27 0.117140 AGTGGGAGTGGGAGTGATGA 59.883 55.000 0.00 0.00 0.00 2.92
27 28 1.207791 GTGGGAGTGGGAGTGATGAT 58.792 55.000 0.00 0.00 0.00 2.45
28 29 1.134280 GTGGGAGTGGGAGTGATGATG 60.134 57.143 0.00 0.00 0.00 3.07
29 30 1.273781 TGGGAGTGGGAGTGATGATGA 60.274 52.381 0.00 0.00 0.00 2.92
30 31 2.053244 GGGAGTGGGAGTGATGATGAT 58.947 52.381 0.00 0.00 0.00 2.45
31 32 2.224475 GGGAGTGGGAGTGATGATGATG 60.224 54.545 0.00 0.00 0.00 3.07
32 33 2.437281 GGAGTGGGAGTGATGATGATGT 59.563 50.000 0.00 0.00 0.00 3.06
33 34 3.464907 GAGTGGGAGTGATGATGATGTG 58.535 50.000 0.00 0.00 0.00 3.21
34 35 2.172082 AGTGGGAGTGATGATGATGTGG 59.828 50.000 0.00 0.00 0.00 4.17
35 36 2.092753 GTGGGAGTGATGATGATGTGGT 60.093 50.000 0.00 0.00 0.00 4.16
36 37 3.134623 GTGGGAGTGATGATGATGTGGTA 59.865 47.826 0.00 0.00 0.00 3.25
37 38 3.389002 TGGGAGTGATGATGATGTGGTAG 59.611 47.826 0.00 0.00 0.00 3.18
38 39 3.244353 GGGAGTGATGATGATGTGGTAGG 60.244 52.174 0.00 0.00 0.00 3.18
39 40 3.397482 GAGTGATGATGATGTGGTAGGC 58.603 50.000 0.00 0.00 0.00 3.93
40 41 2.138320 GTGATGATGATGTGGTAGGCG 58.862 52.381 0.00 0.00 0.00 5.52
41 42 1.151668 GATGATGATGTGGTAGGCGC 58.848 55.000 0.00 0.00 0.00 6.53
42 43 0.601046 ATGATGATGTGGTAGGCGCG 60.601 55.000 0.00 0.00 0.00 6.86
43 44 2.588877 ATGATGTGGTAGGCGCGC 60.589 61.111 25.94 25.94 0.00 6.86
44 45 3.384275 ATGATGTGGTAGGCGCGCA 62.384 57.895 34.42 10.96 0.00 6.09
45 46 2.588877 GATGTGGTAGGCGCGCAT 60.589 61.111 34.42 30.20 0.00 4.73
46 47 2.885676 GATGTGGTAGGCGCGCATG 61.886 63.158 34.42 0.00 0.00 4.06
58 59 2.332514 CGCATGCGGGGCAATAAG 59.667 61.111 31.99 0.00 43.62 1.73
59 60 2.730094 GCATGCGGGGCAATAAGG 59.270 61.111 0.00 0.00 43.62 2.69
60 61 2.730094 CATGCGGGGCAATAAGGC 59.270 61.111 0.00 0.00 43.62 4.35
72 73 4.045636 GCAATAAGGCCTTGTACAATGG 57.954 45.455 28.77 11.61 0.00 3.16
73 74 3.181476 GCAATAAGGCCTTGTACAATGGG 60.181 47.826 28.77 14.91 0.00 4.00
74 75 4.277476 CAATAAGGCCTTGTACAATGGGA 58.723 43.478 28.77 3.74 0.00 4.37
75 76 2.514458 AAGGCCTTGTACAATGGGAG 57.486 50.000 19.73 1.65 0.00 4.30
76 77 1.668826 AGGCCTTGTACAATGGGAGA 58.331 50.000 16.08 0.00 0.00 3.71
77 78 2.208872 AGGCCTTGTACAATGGGAGAT 58.791 47.619 16.08 0.53 0.00 2.75
78 79 2.092212 AGGCCTTGTACAATGGGAGATG 60.092 50.000 16.08 0.00 0.00 2.90
79 80 1.678101 GCCTTGTACAATGGGAGATGC 59.322 52.381 16.08 3.76 0.00 3.91
80 81 2.684927 GCCTTGTACAATGGGAGATGCT 60.685 50.000 16.08 0.00 0.00 3.79
81 82 3.624777 CCTTGTACAATGGGAGATGCTT 58.375 45.455 9.13 0.00 0.00 3.91
82 83 4.780815 CCTTGTACAATGGGAGATGCTTA 58.219 43.478 9.13 0.00 0.00 3.09
83 84 4.818546 CCTTGTACAATGGGAGATGCTTAG 59.181 45.833 9.13 0.00 0.00 2.18
84 85 4.422073 TGTACAATGGGAGATGCTTAGG 57.578 45.455 0.00 0.00 0.00 2.69
85 86 3.136443 TGTACAATGGGAGATGCTTAGGG 59.864 47.826 0.00 0.00 0.00 3.53
86 87 2.492025 ACAATGGGAGATGCTTAGGGA 58.508 47.619 0.00 0.00 0.00 4.20
87 88 2.441001 ACAATGGGAGATGCTTAGGGAG 59.559 50.000 0.00 0.00 0.00 4.30
88 89 1.739750 ATGGGAGATGCTTAGGGAGG 58.260 55.000 0.00 0.00 0.00 4.30
89 90 0.343372 TGGGAGATGCTTAGGGAGGT 59.657 55.000 0.00 0.00 0.00 3.85
90 91 0.761802 GGGAGATGCTTAGGGAGGTG 59.238 60.000 0.00 0.00 0.00 4.00
91 92 0.107643 GGAGATGCTTAGGGAGGTGC 59.892 60.000 0.00 0.00 0.00 5.01
92 93 1.127343 GAGATGCTTAGGGAGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
93 94 1.488393 GAGATGCTTAGGGAGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
94 95 2.700897 GAGATGCTTAGGGAGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
95 96 2.703007 AGATGCTTAGGGAGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
96 97 2.247699 TGCTTAGGGAGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
97 98 2.546899 TGCTTAGGGAGGTGCTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
98 99 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
99 100 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
100 101 4.202524 TGCTTAGGGAGGTGCTTAGAAAAA 60.203 41.667 0.00 0.00 0.00 1.94
101 102 4.950475 GCTTAGGGAGGTGCTTAGAAAAAT 59.050 41.667 0.00 0.00 0.00 1.82
102 103 6.120220 GCTTAGGGAGGTGCTTAGAAAAATA 58.880 40.000 0.00 0.00 0.00 1.40
103 104 6.602009 GCTTAGGGAGGTGCTTAGAAAAATAA 59.398 38.462 0.00 0.00 0.00 1.40
104 105 7.122204 GCTTAGGGAGGTGCTTAGAAAAATAAA 59.878 37.037 0.00 0.00 0.00 1.40
105 106 6.835819 AGGGAGGTGCTTAGAAAAATAAAC 57.164 37.500 0.00 0.00 0.00 2.01
106 107 5.715279 AGGGAGGTGCTTAGAAAAATAAACC 59.285 40.000 0.00 0.00 0.00 3.27
107 108 5.392703 GGGAGGTGCTTAGAAAAATAAACCG 60.393 44.000 0.00 0.00 0.00 4.44
108 109 5.392703 GGAGGTGCTTAGAAAAATAAACCGG 60.393 44.000 0.00 0.00 0.00 5.28
109 110 4.461431 AGGTGCTTAGAAAAATAAACCGGG 59.539 41.667 6.32 0.00 0.00 5.73
110 111 4.219070 GGTGCTTAGAAAAATAAACCGGGT 59.781 41.667 6.32 0.00 0.00 5.28
111 112 5.279106 GGTGCTTAGAAAAATAAACCGGGTT 60.279 40.000 10.96 10.96 0.00 4.11
112 113 6.218019 GTGCTTAGAAAAATAAACCGGGTTT 58.782 36.000 26.79 26.79 39.24 3.27
113 114 6.702723 GTGCTTAGAAAAATAAACCGGGTTTT 59.297 34.615 28.50 11.74 37.01 2.43
114 115 7.225145 GTGCTTAGAAAAATAAACCGGGTTTTT 59.775 33.333 28.50 18.85 37.01 1.94
115 116 7.438757 TGCTTAGAAAAATAAACCGGGTTTTTC 59.561 33.333 28.50 23.47 45.36 2.29
119 120 7.773864 GAAAAATAAACCGGGTTTTTCTGAA 57.226 32.000 28.50 11.38 43.37 3.02
120 121 7.780008 AAAAATAAACCGGGTTTTTCTGAAG 57.220 32.000 28.50 0.00 37.01 3.02
121 122 2.882927 AAACCGGGTTTTTCTGAAGC 57.117 45.000 19.22 0.00 31.10 3.86
122 123 1.770294 AACCGGGTTTTTCTGAAGCA 58.230 45.000 6.59 0.00 0.00 3.91
123 124 1.029681 ACCGGGTTTTTCTGAAGCAC 58.970 50.000 6.32 0.00 0.00 4.40
124 125 0.313987 CCGGGTTTTTCTGAAGCACC 59.686 55.000 10.25 10.25 0.00 5.01
125 126 0.040425 CGGGTTTTTCTGAAGCACCG 60.040 55.000 11.74 10.55 0.00 4.94
126 127 0.313987 GGGTTTTTCTGAAGCACCGG 59.686 55.000 0.00 0.00 0.00 5.28
127 128 1.029681 GGTTTTTCTGAAGCACCGGT 58.970 50.000 0.00 0.00 0.00 5.28
128 129 1.269051 GGTTTTTCTGAAGCACCGGTG 60.269 52.381 30.66 30.66 0.00 4.94
171 172 4.715527 CTTAGTTAAGCGTCTACCCTGT 57.284 45.455 0.00 0.00 0.00 4.00
172 173 5.824904 CTTAGTTAAGCGTCTACCCTGTA 57.175 43.478 0.00 0.00 0.00 2.74
173 174 5.567138 TTAGTTAAGCGTCTACCCTGTAC 57.433 43.478 0.00 0.00 0.00 2.90
174 175 3.424703 AGTTAAGCGTCTACCCTGTACA 58.575 45.455 0.00 0.00 0.00 2.90
175 176 3.828451 AGTTAAGCGTCTACCCTGTACAA 59.172 43.478 0.00 0.00 0.00 2.41
176 177 4.281688 AGTTAAGCGTCTACCCTGTACAAA 59.718 41.667 0.00 0.00 0.00 2.83
177 178 3.975168 AAGCGTCTACCCTGTACAAAT 57.025 42.857 0.00 0.00 0.00 2.32
178 179 6.153340 AGTTAAGCGTCTACCCTGTACAAATA 59.847 38.462 0.00 0.00 0.00 1.40
179 180 5.410355 AAGCGTCTACCCTGTACAAATAA 57.590 39.130 0.00 0.00 0.00 1.40
180 181 5.007385 AGCGTCTACCCTGTACAAATAAG 57.993 43.478 0.00 0.00 0.00 1.73
181 182 3.554731 GCGTCTACCCTGTACAAATAAGC 59.445 47.826 0.00 0.00 0.00 3.09
182 183 4.751060 CGTCTACCCTGTACAAATAAGCA 58.249 43.478 0.00 0.00 0.00 3.91
183 184 5.357257 CGTCTACCCTGTACAAATAAGCAT 58.643 41.667 0.00 0.00 0.00 3.79
184 185 5.462398 CGTCTACCCTGTACAAATAAGCATC 59.538 44.000 0.00 0.00 0.00 3.91
185 186 5.462398 GTCTACCCTGTACAAATAAGCATCG 59.538 44.000 0.00 0.00 0.00 3.84
186 187 3.541632 ACCCTGTACAAATAAGCATCGG 58.458 45.455 0.00 0.00 0.00 4.18
187 188 3.054655 ACCCTGTACAAATAAGCATCGGT 60.055 43.478 0.00 0.00 0.00 4.69
188 189 3.312421 CCCTGTACAAATAAGCATCGGTG 59.688 47.826 0.00 0.00 0.00 4.94
221 222 9.914131 AAAATTCTGGTTTATTTCTCTAAGCAC 57.086 29.630 0.00 0.00 0.00 4.40
222 223 7.631717 ATTCTGGTTTATTTCTCTAAGCACC 57.368 36.000 0.00 0.00 0.00 5.01
223 224 6.374417 TCTGGTTTATTTCTCTAAGCACCT 57.626 37.500 0.00 0.00 0.00 4.00
224 225 6.407202 TCTGGTTTATTTCTCTAAGCACCTC 58.593 40.000 0.00 0.00 0.00 3.85
225 226 6.213600 TCTGGTTTATTTCTCTAAGCACCTCT 59.786 38.462 0.00 0.00 0.00 3.69
226 227 6.407202 TGGTTTATTTCTCTAAGCACCTCTC 58.593 40.000 0.00 0.00 0.00 3.20
227 228 5.818336 GGTTTATTTCTCTAAGCACCTCTCC 59.182 44.000 0.00 0.00 0.00 3.71
228 229 6.352308 GGTTTATTTCTCTAAGCACCTCTCCT 60.352 42.308 0.00 0.00 0.00 3.69
229 230 7.147707 GGTTTATTTCTCTAAGCACCTCTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
230 231 7.973048 TTATTTCTCTAAGCACCTCTCCTAA 57.027 36.000 0.00 0.00 0.00 2.69
231 232 5.923733 TTTCTCTAAGCACCTCTCCTAAG 57.076 43.478 0.00 0.00 0.00 2.18
232 233 3.292460 TCTCTAAGCACCTCTCCTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
233 234 3.027412 CTCTAAGCACCTCTCCTAAGCA 58.973 50.000 0.00 0.00 0.00 3.91
234 235 3.640967 CTCTAAGCACCTCTCCTAAGCAT 59.359 47.826 0.00 0.00 0.00 3.79
235 236 2.998316 AAGCACCTCTCCTAAGCATC 57.002 50.000 0.00 0.00 0.00 3.91
236 237 2.173126 AGCACCTCTCCTAAGCATCT 57.827 50.000 0.00 0.00 0.00 2.90
237 238 2.038659 AGCACCTCTCCTAAGCATCTC 58.961 52.381 0.00 0.00 0.00 2.75
238 239 1.069978 GCACCTCTCCTAAGCATCTCC 59.930 57.143 0.00 0.00 0.00 3.71
239 240 1.691434 CACCTCTCCTAAGCATCTCCC 59.309 57.143 0.00 0.00 0.00 4.30
240 241 1.292242 ACCTCTCCTAAGCATCTCCCA 59.708 52.381 0.00 0.00 0.00 4.37
241 242 2.090267 ACCTCTCCTAAGCATCTCCCAT 60.090 50.000 0.00 0.00 0.00 4.00
242 243 2.978278 CCTCTCCTAAGCATCTCCCATT 59.022 50.000 0.00 0.00 0.00 3.16
243 244 3.244491 CCTCTCCTAAGCATCTCCCATTG 60.244 52.174 0.00 0.00 0.00 2.82
244 245 2.105477 TCTCCTAAGCATCTCCCATTGC 59.895 50.000 0.00 0.00 39.17 3.56
245 246 1.845791 TCCTAAGCATCTCCCATTGCA 59.154 47.619 0.00 0.00 41.35 4.08
246 247 1.952296 CCTAAGCATCTCCCATTGCAC 59.048 52.381 0.00 0.00 41.35 4.57
247 248 2.646930 CTAAGCATCTCCCATTGCACA 58.353 47.619 0.00 0.00 41.35 4.57
248 249 1.927487 AAGCATCTCCCATTGCACAA 58.073 45.000 0.00 0.00 41.35 3.33
249 250 1.471119 AGCATCTCCCATTGCACAAG 58.529 50.000 0.00 0.00 41.35 3.16
250 251 1.005097 AGCATCTCCCATTGCACAAGA 59.995 47.619 0.00 0.00 41.35 3.02
251 252 2.029623 GCATCTCCCATTGCACAAGAT 58.970 47.619 0.00 0.00 38.72 2.40
344 443 1.532007 GTGCACGTAATTTTCGGTCCA 59.468 47.619 0.00 0.00 0.00 4.02
371 470 4.040461 CACTCCCCTATCCATCATTTACGT 59.960 45.833 0.00 0.00 0.00 3.57
384 483 6.094048 CCATCATTTACGTTTGATCCTGTCTT 59.906 38.462 0.00 0.00 30.24 3.01
437 546 5.184096 AGAGTGACATTTACTCATCAGTCGT 59.816 40.000 7.75 0.00 45.41 4.34
440 549 5.061064 GTGACATTTACTCATCAGTCGTCAC 59.939 44.000 0.00 0.00 39.23 3.67
443 552 6.920817 ACATTTACTCATCAGTCGTCACTAA 58.079 36.000 0.00 0.00 33.62 2.24
444 553 7.030165 ACATTTACTCATCAGTCGTCACTAAG 58.970 38.462 0.00 0.00 33.62 2.18
445 554 6.812879 TTTACTCATCAGTCGTCACTAAGA 57.187 37.500 0.00 0.00 33.62 2.10
468 577 6.380846 AGACAAAGGCCATGCTTTATTTCATA 59.619 34.615 5.01 0.00 0.00 2.15
504 613 1.542547 GGACTGCCGAGGAAAAACTCA 60.543 52.381 0.00 0.00 37.34 3.41
520 629 5.892160 AAACTCATTCAGACCATGATGTG 57.108 39.130 0.00 0.00 37.89 3.21
554 663 2.411628 TAAGCATGCGCCCTCTTTTA 57.588 45.000 13.01 0.00 39.83 1.52
569 678 7.172703 CGCCCTCTTTTAGTTTAGAAGAAAAGA 59.827 37.037 8.04 8.04 42.62 2.52
574 683 9.614792 TCTTTTAGTTTAGAAGAAAAGACTGCT 57.385 29.630 4.90 0.00 40.94 4.24
582 691 3.274095 AGAAAAGACTGCTAGGCCATC 57.726 47.619 5.01 0.00 0.00 3.51
601 710 7.342799 AGGCCATCAGTGTTCAAATATATTGTT 59.657 33.333 5.01 0.00 0.00 2.83
603 712 8.190122 GCCATCAGTGTTCAAATATATTGTTCA 58.810 33.333 0.00 0.00 0.00 3.18
634 743 9.077885 TCTATCAGTTTGGACTTTTAAAGCAAT 57.922 29.630 4.42 0.00 32.54 3.56
649 758 2.250031 AGCAATTGGTTGGAGCATGAA 58.750 42.857 3.82 0.00 35.83 2.57
650 759 2.835764 AGCAATTGGTTGGAGCATGAAT 59.164 40.909 3.82 0.00 35.83 2.57
651 760 3.262405 AGCAATTGGTTGGAGCATGAATT 59.738 39.130 3.82 0.00 35.83 2.17
652 761 4.004982 GCAATTGGTTGGAGCATGAATTT 58.995 39.130 7.72 0.00 35.83 1.82
653 762 5.046448 AGCAATTGGTTGGAGCATGAATTTA 60.046 36.000 3.82 0.00 35.83 1.40
654 763 5.642919 GCAATTGGTTGGAGCATGAATTTAA 59.357 36.000 7.72 0.00 35.83 1.52
655 764 6.316890 GCAATTGGTTGGAGCATGAATTTAAT 59.683 34.615 7.72 0.00 35.83 1.40
656 765 7.495279 GCAATTGGTTGGAGCATGAATTTAATA 59.505 33.333 7.72 0.00 35.83 0.98
657 766 9.381033 CAATTGGTTGGAGCATGAATTTAATAA 57.619 29.630 0.00 0.00 0.00 1.40
659 768 8.945481 TTGGTTGGAGCATGAATTTAATAATG 57.055 30.769 0.00 0.00 0.00 1.90
664 773 9.752961 TTGGAGCATGAATTTAATAATGACATG 57.247 29.630 0.00 0.00 39.54 3.21
665 774 8.361889 TGGAGCATGAATTTAATAATGACATGG 58.638 33.333 0.00 0.00 38.42 3.66
675 802 2.442236 AATGACATGGGAGCCGAAAT 57.558 45.000 0.00 0.00 0.00 2.17
693 820 4.692625 CGAAATGTCTTGAGTTGAGTGGAT 59.307 41.667 0.00 0.00 0.00 3.41
702 829 8.734386 GTCTTGAGTTGAGTGGATCATAAATTT 58.266 33.333 0.00 0.00 37.89 1.82
747 1604 8.853469 AACAGCTTAATCTACGATAAGTGTAC 57.147 34.615 0.00 0.00 32.82 2.90
894 2189 6.672266 TCTCTGGCCTGTCTATAAATAAGG 57.328 41.667 3.32 0.00 0.00 2.69
972 2278 0.031178 CAGCAAGCAAACCACAGACC 59.969 55.000 0.00 0.00 0.00 3.85
1012 2318 0.749091 CAAGAGAATGGCGGCCATCA 60.749 55.000 33.02 7.57 44.40 3.07
1013 2319 0.184451 AAGAGAATGGCGGCCATCAT 59.816 50.000 33.02 24.05 44.40 2.45
1227 2569 1.822613 CCTCGACCTCGGATTCGGA 60.823 63.158 0.00 0.00 40.29 4.55
1397 2742 0.104934 AAGATCTCCGGCCCTGGTAT 60.105 55.000 0.00 0.00 0.00 2.73
1407 2752 1.004277 GGCCCTGGTATGACTTGTTCA 59.996 52.381 0.00 0.00 39.11 3.18
1409 2754 2.552155 GCCCTGGTATGACTTGTTCACA 60.552 50.000 0.00 0.00 36.92 3.58
1459 4533 9.361315 TCTGTTTGATTTGCTATTCATTTGATG 57.639 29.630 0.00 0.00 0.00 3.07
1460 4534 9.361315 CTGTTTGATTTGCTATTCATTTGATGA 57.639 29.630 0.00 0.00 37.55 2.92
1461 4535 9.878667 TGTTTGATTTGCTATTCATTTGATGAT 57.121 25.926 0.00 0.00 39.39 2.45
1464 4538 9.524106 TTGATTTGCTATTCATTTGATGATGAC 57.476 29.630 0.00 0.00 39.39 3.06
1465 4539 8.688151 TGATTTGCTATTCATTTGATGATGACA 58.312 29.630 0.00 0.00 39.39 3.58
1466 4540 9.692749 GATTTGCTATTCATTTGATGATGACAT 57.307 29.630 0.00 0.00 39.39 3.06
1468 4542 9.524106 TTTGCTATTCATTTGATGATGACATTC 57.476 29.630 0.00 0.00 39.39 2.67
1469 4543 8.459911 TGCTATTCATTTGATGATGACATTCT 57.540 30.769 0.00 0.00 39.39 2.40
1470 4544 8.349983 TGCTATTCATTTGATGATGACATTCTG 58.650 33.333 0.00 0.00 39.39 3.02
1471 4545 8.350722 GCTATTCATTTGATGATGACATTCTGT 58.649 33.333 0.00 0.00 39.39 3.41
1474 4548 9.938280 ATTCATTTGATGATGACATTCTGTTTT 57.062 25.926 0.00 0.00 39.39 2.43
1475 4549 8.975410 TCATTTGATGATGACATTCTGTTTTC 57.025 30.769 0.00 0.00 36.82 2.29
1476 4550 8.799367 TCATTTGATGATGACATTCTGTTTTCT 58.201 29.630 0.00 0.00 36.82 2.52
1477 4551 9.073368 CATTTGATGATGACATTCTGTTTTCTC 57.927 33.333 0.00 0.00 36.82 2.87
1478 4552 6.413018 TGATGATGACATTCTGTTTTCTCG 57.587 37.500 0.00 0.00 36.82 4.04
1479 4553 5.352293 TGATGATGACATTCTGTTTTCTCGG 59.648 40.000 0.00 0.00 36.82 4.63
1480 4554 4.641396 TGATGACATTCTGTTTTCTCGGT 58.359 39.130 0.00 0.00 0.00 4.69
1481 4555 4.452114 TGATGACATTCTGTTTTCTCGGTG 59.548 41.667 0.00 0.00 0.00 4.94
1482 4556 4.066646 TGACATTCTGTTTTCTCGGTGA 57.933 40.909 0.00 0.00 0.00 4.02
1483 4557 4.641396 TGACATTCTGTTTTCTCGGTGAT 58.359 39.130 0.00 0.00 0.00 3.06
1484 4558 5.063204 TGACATTCTGTTTTCTCGGTGATT 58.937 37.500 0.00 0.00 0.00 2.57
1485 4559 6.227522 TGACATTCTGTTTTCTCGGTGATTA 58.772 36.000 0.00 0.00 0.00 1.75
1486 4560 6.368791 TGACATTCTGTTTTCTCGGTGATTAG 59.631 38.462 0.00 0.00 0.00 1.73
1487 4561 6.231211 ACATTCTGTTTTCTCGGTGATTAGT 58.769 36.000 0.00 0.00 0.00 2.24
1496 4570 7.653767 TTTCTCGGTGATTAGTTTCTTCTTC 57.346 36.000 0.00 0.00 0.00 2.87
1497 4571 6.340962 TCTCGGTGATTAGTTTCTTCTTCA 57.659 37.500 0.00 0.00 0.00 3.02
1502 4576 8.474831 TCGGTGATTAGTTTCTTCTTCATGATA 58.525 33.333 0.00 0.00 0.00 2.15
1693 4832 0.965866 GGGCTGAAGTTAAGGTGGCC 60.966 60.000 0.00 0.00 37.61 5.36
1726 4868 7.886629 AAAAATCTGCTTATATGGCTGAGAA 57.113 32.000 13.90 0.00 40.03 2.87
1734 4879 2.401583 TATGGCTGAGAATTGTGCGT 57.598 45.000 0.00 0.00 0.00 5.24
1775 4920 2.514013 GCGTGCTATCGGGACAACG 61.514 63.158 0.00 0.00 35.96 4.10
1783 4928 2.649331 ATCGGGACAACGTAACAGAG 57.351 50.000 0.00 0.00 34.94 3.35
1854 4999 4.413087 GAAGAGTAAGAAATCTCGACGCA 58.587 43.478 0.00 0.00 36.03 5.24
1871 5016 1.334689 CGCAATATGTCGTCGGAGCTA 60.335 52.381 0.00 0.00 0.00 3.32
1873 5018 3.318017 GCAATATGTCGTCGGAGCTATT 58.682 45.455 0.00 0.00 0.00 1.73
1874 5019 3.365220 GCAATATGTCGTCGGAGCTATTC 59.635 47.826 0.00 0.00 0.00 1.75
2076 5241 0.459078 TGCTCTCATGCTCCTTCGAG 59.541 55.000 0.00 0.00 39.33 4.04
2098 5263 4.620982 GCAGTGATTTGCTTTTAACCAGT 58.379 39.130 0.00 0.00 40.89 4.00
2099 5264 5.768317 GCAGTGATTTGCTTTTAACCAGTA 58.232 37.500 0.00 0.00 40.89 2.74
2100 5265 5.858581 GCAGTGATTTGCTTTTAACCAGTAG 59.141 40.000 0.00 0.00 40.89 2.57
2101 5266 6.293955 GCAGTGATTTGCTTTTAACCAGTAGA 60.294 38.462 0.00 0.00 40.89 2.59
2102 5267 7.078228 CAGTGATTTGCTTTTAACCAGTAGAC 58.922 38.462 0.00 0.00 0.00 2.59
2103 5268 6.770785 AGTGATTTGCTTTTAACCAGTAGACA 59.229 34.615 0.00 0.00 0.00 3.41
2104 5269 6.856426 GTGATTTGCTTTTAACCAGTAGACAC 59.144 38.462 0.00 0.00 0.00 3.67
2105 5270 6.770785 TGATTTGCTTTTAACCAGTAGACACT 59.229 34.615 0.00 0.00 34.42 3.55
2113 5278 3.715854 CAGTAGACACTGTACCCGC 57.284 57.895 0.00 0.00 46.03 6.13
2114 5279 0.885879 CAGTAGACACTGTACCCGCA 59.114 55.000 0.00 0.00 46.03 5.69
2115 5280 1.135373 CAGTAGACACTGTACCCGCAG 60.135 57.143 0.00 0.00 46.03 5.18
2116 5281 1.171308 GTAGACACTGTACCCGCAGA 58.829 55.000 0.00 0.00 39.62 4.26
2117 5282 1.542915 GTAGACACTGTACCCGCAGAA 59.457 52.381 0.00 0.00 39.62 3.02
2118 5283 1.045407 AGACACTGTACCCGCAGAAA 58.955 50.000 0.00 0.00 39.62 2.52
2119 5284 1.414919 AGACACTGTACCCGCAGAAAA 59.585 47.619 0.00 0.00 39.62 2.29
2120 5285 2.158871 AGACACTGTACCCGCAGAAAAA 60.159 45.455 0.00 0.00 39.62 1.94
2198 5392 8.411318 ACAGTTTGCTCTAAAACAAATTTCTG 57.589 30.769 2.97 0.00 41.56 3.02
2214 5408 5.695851 ATTTCTGTGTCCAGCTTAACAAG 57.304 39.130 0.00 1.80 38.66 3.16
2231 5425 2.164219 ACAAGAAGTTGTGGCTGTTGTG 59.836 45.455 0.00 0.00 45.58 3.33
2288 5488 2.430546 AGAAGTGTCAAGACTGCGAG 57.569 50.000 1.53 0.00 0.00 5.03
2385 5585 9.685276 GGATCCCATGAACACATATATTTCATA 57.315 33.333 0.00 0.00 37.78 2.15
2432 5632 5.277538 GCCAAATGGAGAATAAGACGTGATC 60.278 44.000 2.98 0.00 37.39 2.92
2476 5676 9.959749 ATTGTTTGTATATATAAGGGCGTTTTG 57.040 29.630 0.00 0.00 0.00 2.44
2477 5677 7.932335 TGTTTGTATATATAAGGGCGTTTTGG 58.068 34.615 0.00 0.00 0.00 3.28
2478 5678 6.563222 TTGTATATATAAGGGCGTTTTGGC 57.437 37.500 0.00 0.00 43.88 4.52
2479 5679 5.871834 TGTATATATAAGGGCGTTTTGGCT 58.128 37.500 0.00 0.00 44.11 4.75
2480 5680 5.935789 TGTATATATAAGGGCGTTTTGGCTC 59.064 40.000 0.00 0.00 44.11 4.70
2483 5683 3.763671 AGGGCGTTTTGGCTCTTG 58.236 55.556 0.00 0.00 42.30 3.02
2484 5684 1.903404 AGGGCGTTTTGGCTCTTGG 60.903 57.895 0.00 0.00 42.30 3.61
2485 5685 2.650778 GGCGTTTTGGCTCTTGGG 59.349 61.111 0.00 0.00 40.72 4.12
2486 5686 1.901464 GGCGTTTTGGCTCTTGGGA 60.901 57.895 0.00 0.00 40.72 4.37
2487 5687 1.581447 GCGTTTTGGCTCTTGGGAG 59.419 57.895 0.00 0.00 42.18 4.30
2508 5708 3.973657 GCATATGCTCCCAAATGAACAG 58.026 45.455 20.64 0.00 38.21 3.16
2509 5709 3.382546 GCATATGCTCCCAAATGAACAGT 59.617 43.478 20.64 0.00 38.21 3.55
2510 5710 4.580167 GCATATGCTCCCAAATGAACAGTA 59.420 41.667 20.64 0.00 38.21 2.74
2511 5711 5.067674 GCATATGCTCCCAAATGAACAGTAA 59.932 40.000 20.64 0.00 38.21 2.24
2512 5712 6.405731 GCATATGCTCCCAAATGAACAGTAAA 60.406 38.462 20.64 0.00 38.21 2.01
2513 5713 7.685155 GCATATGCTCCCAAATGAACAGTAAAT 60.685 37.037 20.64 0.00 38.21 1.40
2514 5714 6.610075 ATGCTCCCAAATGAACAGTAAATT 57.390 33.333 0.00 0.00 0.00 1.82
2515 5715 6.024552 TGCTCCCAAATGAACAGTAAATTC 57.975 37.500 0.00 0.00 0.00 2.17
2516 5716 5.538053 TGCTCCCAAATGAACAGTAAATTCA 59.462 36.000 0.00 0.00 40.25 2.57
2517 5717 6.041409 TGCTCCCAAATGAACAGTAAATTCAA 59.959 34.615 0.00 0.00 39.43 2.69
2518 5718 6.928492 GCTCCCAAATGAACAGTAAATTCAAA 59.072 34.615 0.00 0.00 39.43 2.69
2519 5719 7.440856 GCTCCCAAATGAACAGTAAATTCAAAA 59.559 33.333 0.00 0.00 39.43 2.44
2520 5720 9.492973 CTCCCAAATGAACAGTAAATTCAAAAT 57.507 29.630 0.00 0.00 39.43 1.82
2577 5777 8.428186 TTTTTCGTAGATGTTCTTGTTAGTGT 57.572 30.769 0.00 0.00 35.04 3.55
2578 5778 9.531942 TTTTTCGTAGATGTTCTTGTTAGTGTA 57.468 29.630 0.00 0.00 35.04 2.90
2579 5779 9.531942 TTTTCGTAGATGTTCTTGTTAGTGTAA 57.468 29.630 0.00 0.00 35.04 2.41
2580 5780 8.511465 TTCGTAGATGTTCTTGTTAGTGTAAC 57.489 34.615 0.00 0.00 36.19 2.50
2581 5781 7.650890 TCGTAGATGTTCTTGTTAGTGTAACA 58.349 34.615 0.00 0.00 46.13 2.41
2601 5801 3.719924 CAAGAGTGCTTGCCAATTTTCA 58.280 40.909 0.00 0.00 44.41 2.69
2602 5802 4.312443 CAAGAGTGCTTGCCAATTTTCAT 58.688 39.130 0.00 0.00 44.41 2.57
2603 5803 3.921677 AGAGTGCTTGCCAATTTTCATG 58.078 40.909 0.00 0.00 0.00 3.07
2604 5804 2.414138 GAGTGCTTGCCAATTTTCATGC 59.586 45.455 7.31 7.31 34.96 4.06
2605 5805 1.127213 GTGCTTGCCAATTTTCATGCG 59.873 47.619 8.87 0.00 36.51 4.73
2606 5806 1.000618 TGCTTGCCAATTTTCATGCGA 59.999 42.857 0.00 0.00 36.51 5.10
2607 5807 2.067766 GCTTGCCAATTTTCATGCGAA 58.932 42.857 0.00 0.00 0.00 4.70
2608 5808 2.479656 GCTTGCCAATTTTCATGCGAAA 59.520 40.909 0.00 0.00 39.38 3.46
2609 5809 3.665060 GCTTGCCAATTTTCATGCGAAAC 60.665 43.478 0.00 0.00 40.84 2.78
2610 5810 2.057316 TGCCAATTTTCATGCGAAACG 58.943 42.857 0.00 0.00 40.84 3.60
2611 5811 1.389784 GCCAATTTTCATGCGAAACGG 59.610 47.619 0.00 0.00 40.84 4.44
2612 5812 1.991965 CCAATTTTCATGCGAAACGGG 59.008 47.619 0.00 0.00 40.84 5.28
2613 5813 2.352225 CCAATTTTCATGCGAAACGGGA 60.352 45.455 0.00 0.00 40.84 5.14
2614 5814 3.510719 CAATTTTCATGCGAAACGGGAT 58.489 40.909 0.00 0.00 40.84 3.85
2615 5815 2.627863 TTTTCATGCGAAACGGGATG 57.372 45.000 0.00 0.00 40.84 3.51
2616 5816 1.814793 TTTCATGCGAAACGGGATGA 58.185 45.000 0.00 0.00 42.08 2.92
2617 5817 1.083489 TTCATGCGAAACGGGATGAC 58.917 50.000 0.00 0.00 43.23 3.06
2618 5818 1.081556 TCATGCGAAACGGGATGACG 61.082 55.000 0.00 0.00 39.44 4.35
2619 5819 1.813753 ATGCGAAACGGGATGACGG 60.814 57.895 0.00 0.00 38.39 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.294078 CCCACTCCCACTCCCACTC 61.294 68.421 0.00 0.00 0.00 3.51
2 3 2.203938 TCCCACTCCCACTCCCAC 60.204 66.667 0.00 0.00 0.00 4.61
5 6 0.618968 ATCACTCCCACTCCCACTCC 60.619 60.000 0.00 0.00 0.00 3.85
6 7 0.539051 CATCACTCCCACTCCCACTC 59.461 60.000 0.00 0.00 0.00 3.51
7 8 0.117140 TCATCACTCCCACTCCCACT 59.883 55.000 0.00 0.00 0.00 4.00
11 12 2.437281 ACATCATCATCACTCCCACTCC 59.563 50.000 0.00 0.00 0.00 3.85
12 13 3.464907 CACATCATCATCACTCCCACTC 58.535 50.000 0.00 0.00 0.00 3.51
14 15 2.092753 ACCACATCATCATCACTCCCAC 60.093 50.000 0.00 0.00 0.00 4.61
15 16 2.199208 ACCACATCATCATCACTCCCA 58.801 47.619 0.00 0.00 0.00 4.37
16 17 3.244353 CCTACCACATCATCATCACTCCC 60.244 52.174 0.00 0.00 0.00 4.30
18 19 3.397482 GCCTACCACATCATCATCACTC 58.603 50.000 0.00 0.00 0.00 3.51
19 20 2.224137 CGCCTACCACATCATCATCACT 60.224 50.000 0.00 0.00 0.00 3.41
20 21 2.138320 CGCCTACCACATCATCATCAC 58.862 52.381 0.00 0.00 0.00 3.06
21 22 1.541015 GCGCCTACCACATCATCATCA 60.541 52.381 0.00 0.00 0.00 3.07
22 23 1.151668 GCGCCTACCACATCATCATC 58.848 55.000 0.00 0.00 0.00 2.92
23 24 0.601046 CGCGCCTACCACATCATCAT 60.601 55.000 0.00 0.00 0.00 2.45
24 25 1.227234 CGCGCCTACCACATCATCA 60.227 57.895 0.00 0.00 0.00 3.07
25 26 2.598632 GCGCGCCTACCACATCATC 61.599 63.158 23.24 0.00 0.00 2.92
26 27 2.588877 GCGCGCCTACCACATCAT 60.589 61.111 23.24 0.00 0.00 2.45
27 28 3.384275 ATGCGCGCCTACCACATCA 62.384 57.895 30.77 5.62 0.00 3.07
28 29 2.588877 ATGCGCGCCTACCACATC 60.589 61.111 30.77 0.00 0.00 3.06
29 30 2.896854 CATGCGCGCCTACCACAT 60.897 61.111 30.77 10.70 0.00 3.21
40 41 3.829272 CTTATTGCCCCGCATGCGC 62.829 63.158 34.00 20.99 38.76 6.09
41 42 2.332514 CTTATTGCCCCGCATGCG 59.667 61.111 32.60 32.60 38.76 4.73
42 43 2.730094 CCTTATTGCCCCGCATGC 59.270 61.111 7.91 7.91 38.76 4.06
43 44 2.730094 GCCTTATTGCCCCGCATG 59.270 61.111 0.00 0.00 38.76 4.06
44 45 2.521708 GGCCTTATTGCCCCGCAT 60.522 61.111 0.00 0.00 46.11 4.73
51 52 3.181476 CCCATTGTACAAGGCCTTATTGC 60.181 47.826 20.00 12.35 0.00 3.56
52 53 4.277476 TCCCATTGTACAAGGCCTTATTG 58.723 43.478 20.00 9.88 0.00 1.90
53 54 4.229582 TCTCCCATTGTACAAGGCCTTATT 59.770 41.667 20.00 10.98 0.00 1.40
54 55 3.785887 TCTCCCATTGTACAAGGCCTTAT 59.214 43.478 20.00 10.37 0.00 1.73
55 56 3.186283 TCTCCCATTGTACAAGGCCTTA 58.814 45.455 20.00 1.64 0.00 2.69
56 57 1.992557 TCTCCCATTGTACAAGGCCTT 59.007 47.619 13.78 13.78 0.00 4.35
57 58 1.668826 TCTCCCATTGTACAAGGCCT 58.331 50.000 14.66 0.00 0.00 5.19
58 59 2.301346 CATCTCCCATTGTACAAGGCC 58.699 52.381 14.66 0.00 0.00 5.19
59 60 1.678101 GCATCTCCCATTGTACAAGGC 59.322 52.381 14.66 0.00 0.00 4.35
60 61 3.287867 AGCATCTCCCATTGTACAAGG 57.712 47.619 14.65 13.92 0.00 3.61
61 62 4.818546 CCTAAGCATCTCCCATTGTACAAG 59.181 45.833 14.65 6.30 0.00 3.16
62 63 4.385199 CCCTAAGCATCTCCCATTGTACAA 60.385 45.833 11.41 11.41 0.00 2.41
63 64 3.136443 CCCTAAGCATCTCCCATTGTACA 59.864 47.826 0.00 0.00 0.00 2.90
64 65 3.391296 TCCCTAAGCATCTCCCATTGTAC 59.609 47.826 0.00 0.00 0.00 2.90
65 66 3.648067 CTCCCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
66 67 2.441001 CTCCCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
67 68 2.224719 CCTCCCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
68 69 2.061061 CCTCCCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
69 70 1.061033 ACCTCCCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
70 71 0.343372 ACCTCCCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
71 72 0.761802 CACCTCCCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
72 73 0.107643 GCACCTCCCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
73 74 1.127343 AGCACCTCCCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
74 75 1.589414 AAGCACCTCCCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
75 76 2.700897 TCTAAGCACCTCCCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
76 77 2.764269 TCTAAGCACCTCCCTAAGCAT 58.236 47.619 0.00 0.00 0.00 3.79
77 78 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
78 79 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
79 80 8.459635 GTTTATTTTTCTAAGCACCTCCCTAAG 58.540 37.037 0.00 0.00 0.00 2.18
80 81 7.395206 GGTTTATTTTTCTAAGCACCTCCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
81 82 6.888088 GGTTTATTTTTCTAAGCACCTCCCTA 59.112 38.462 0.00 0.00 0.00 3.53
82 83 5.715279 GGTTTATTTTTCTAAGCACCTCCCT 59.285 40.000 0.00 0.00 0.00 4.20
83 84 5.392703 CGGTTTATTTTTCTAAGCACCTCCC 60.393 44.000 0.00 0.00 0.00 4.30
84 85 5.392703 CCGGTTTATTTTTCTAAGCACCTCC 60.393 44.000 0.00 0.00 0.00 4.30
85 86 5.392703 CCCGGTTTATTTTTCTAAGCACCTC 60.393 44.000 0.00 0.00 0.00 3.85
86 87 4.461431 CCCGGTTTATTTTTCTAAGCACCT 59.539 41.667 0.00 0.00 0.00 4.00
87 88 4.219070 ACCCGGTTTATTTTTCTAAGCACC 59.781 41.667 0.00 0.00 0.00 5.01
88 89 5.381174 ACCCGGTTTATTTTTCTAAGCAC 57.619 39.130 0.00 0.00 0.00 4.40
89 90 6.408107 AAACCCGGTTTATTTTTCTAAGCA 57.592 33.333 14.16 0.00 33.70 3.91
90 91 7.718272 AAAAACCCGGTTTATTTTTCTAAGC 57.282 32.000 16.03 0.00 34.43 3.09
95 96 7.517734 GCTTCAGAAAAACCCGGTTTATTTTTC 60.518 37.037 22.79 22.79 45.95 2.29
96 97 6.259167 GCTTCAGAAAAACCCGGTTTATTTTT 59.741 34.615 16.03 6.68 38.03 1.94
97 98 5.756347 GCTTCAGAAAAACCCGGTTTATTTT 59.244 36.000 16.03 7.04 34.43 1.82
98 99 5.163395 TGCTTCAGAAAAACCCGGTTTATTT 60.163 36.000 16.03 7.76 34.43 1.40
99 100 4.342665 TGCTTCAGAAAAACCCGGTTTATT 59.657 37.500 16.03 11.90 34.43 1.40
100 101 3.892588 TGCTTCAGAAAAACCCGGTTTAT 59.107 39.130 16.03 3.02 34.43 1.40
101 102 3.067040 GTGCTTCAGAAAAACCCGGTTTA 59.933 43.478 16.03 0.00 34.43 2.01
102 103 2.104170 TGCTTCAGAAAAACCCGGTTT 58.896 42.857 9.92 9.92 37.34 3.27
103 104 1.407618 GTGCTTCAGAAAAACCCGGTT 59.592 47.619 0.00 0.00 0.00 4.44
104 105 1.029681 GTGCTTCAGAAAAACCCGGT 58.970 50.000 0.00 0.00 0.00 5.28
105 106 0.313987 GGTGCTTCAGAAAAACCCGG 59.686 55.000 0.00 0.00 0.00 5.73
106 107 0.040425 CGGTGCTTCAGAAAAACCCG 60.040 55.000 7.91 3.09 0.00 5.28
107 108 0.313987 CCGGTGCTTCAGAAAAACCC 59.686 55.000 0.00 0.00 0.00 4.11
108 109 1.029681 ACCGGTGCTTCAGAAAAACC 58.970 50.000 6.12 4.42 0.00 3.27
109 110 2.119671 CACCGGTGCTTCAGAAAAAC 57.880 50.000 24.02 0.00 0.00 2.43
121 122 3.926616 CCTATAGAAATAGGCACCGGTG 58.073 50.000 30.66 30.66 46.45 4.94
150 151 4.715527 ACAGGGTAGACGCTTAACTAAG 57.284 45.455 0.00 0.00 37.00 2.18
151 152 5.009631 TGTACAGGGTAGACGCTTAACTAA 58.990 41.667 0.00 0.00 37.00 2.24
152 153 4.588899 TGTACAGGGTAGACGCTTAACTA 58.411 43.478 0.00 0.00 37.00 2.24
153 154 3.424703 TGTACAGGGTAGACGCTTAACT 58.575 45.455 0.00 0.00 37.00 2.24
154 155 3.855689 TGTACAGGGTAGACGCTTAAC 57.144 47.619 0.00 0.00 37.00 2.01
155 156 4.870123 TTTGTACAGGGTAGACGCTTAA 57.130 40.909 0.00 0.00 37.00 1.85
156 157 6.528537 TTATTTGTACAGGGTAGACGCTTA 57.471 37.500 0.00 0.00 37.00 3.09
157 158 3.975168 ATTTGTACAGGGTAGACGCTT 57.025 42.857 0.00 0.00 37.00 4.68
158 159 4.679905 GCTTATTTGTACAGGGTAGACGCT 60.680 45.833 0.00 0.00 39.95 5.07
159 160 3.554731 GCTTATTTGTACAGGGTAGACGC 59.445 47.826 0.00 0.00 0.00 5.19
160 161 4.751060 TGCTTATTTGTACAGGGTAGACG 58.249 43.478 0.00 0.00 0.00 4.18
161 162 5.462398 CGATGCTTATTTGTACAGGGTAGAC 59.538 44.000 0.00 0.00 0.00 2.59
162 163 5.452776 CCGATGCTTATTTGTACAGGGTAGA 60.453 44.000 0.00 0.00 0.00 2.59
163 164 4.750098 CCGATGCTTATTTGTACAGGGTAG 59.250 45.833 0.00 0.00 0.00 3.18
164 165 4.162698 ACCGATGCTTATTTGTACAGGGTA 59.837 41.667 0.00 0.00 0.00 3.69
165 166 3.054655 ACCGATGCTTATTTGTACAGGGT 60.055 43.478 0.00 0.00 0.00 4.34
166 167 3.312421 CACCGATGCTTATTTGTACAGGG 59.688 47.826 0.00 0.00 0.00 4.45
167 168 4.536364 CACCGATGCTTATTTGTACAGG 57.464 45.455 0.00 0.00 0.00 4.00
195 196 9.914131 GTGCTTAGAGAAATAAACCAGAATTTT 57.086 29.630 0.00 0.00 0.00 1.82
196 197 8.523658 GGTGCTTAGAGAAATAAACCAGAATTT 58.476 33.333 0.00 0.00 0.00 1.82
197 198 7.890655 AGGTGCTTAGAGAAATAAACCAGAATT 59.109 33.333 0.00 0.00 0.00 2.17
198 199 7.406104 AGGTGCTTAGAGAAATAAACCAGAAT 58.594 34.615 0.00 0.00 0.00 2.40
199 200 6.779860 AGGTGCTTAGAGAAATAAACCAGAA 58.220 36.000 0.00 0.00 0.00 3.02
200 201 6.213600 AGAGGTGCTTAGAGAAATAAACCAGA 59.786 38.462 0.00 0.00 0.00 3.86
201 202 6.410540 AGAGGTGCTTAGAGAAATAAACCAG 58.589 40.000 0.00 0.00 0.00 4.00
202 203 6.374417 AGAGGTGCTTAGAGAAATAAACCA 57.626 37.500 0.00 0.00 0.00 3.67
203 204 5.818336 GGAGAGGTGCTTAGAGAAATAAACC 59.182 44.000 0.00 0.00 0.00 3.27
204 205 6.645306 AGGAGAGGTGCTTAGAGAAATAAAC 58.355 40.000 0.00 0.00 0.00 2.01
205 206 6.875972 AGGAGAGGTGCTTAGAGAAATAAA 57.124 37.500 0.00 0.00 0.00 1.40
206 207 7.418025 GCTTAGGAGAGGTGCTTAGAGAAATAA 60.418 40.741 0.00 0.00 0.00 1.40
207 208 6.041069 GCTTAGGAGAGGTGCTTAGAGAAATA 59.959 42.308 0.00 0.00 0.00 1.40
208 209 5.163353 GCTTAGGAGAGGTGCTTAGAGAAAT 60.163 44.000 0.00 0.00 0.00 2.17
209 210 4.160626 GCTTAGGAGAGGTGCTTAGAGAAA 59.839 45.833 0.00 0.00 0.00 2.52
210 211 3.702045 GCTTAGGAGAGGTGCTTAGAGAA 59.298 47.826 0.00 0.00 0.00 2.87
211 212 3.292460 GCTTAGGAGAGGTGCTTAGAGA 58.708 50.000 0.00 0.00 0.00 3.10
212 213 3.027412 TGCTTAGGAGAGGTGCTTAGAG 58.973 50.000 0.00 0.00 0.00 2.43
213 214 3.101643 TGCTTAGGAGAGGTGCTTAGA 57.898 47.619 0.00 0.00 0.00 2.10
214 215 3.640967 AGATGCTTAGGAGAGGTGCTTAG 59.359 47.826 0.00 0.00 0.00 2.18
215 216 3.639094 GAGATGCTTAGGAGAGGTGCTTA 59.361 47.826 0.00 0.00 0.00 3.09
216 217 2.433970 GAGATGCTTAGGAGAGGTGCTT 59.566 50.000 0.00 0.00 0.00 3.91
217 218 2.038659 GAGATGCTTAGGAGAGGTGCT 58.961 52.381 0.00 0.00 0.00 4.40
218 219 1.069978 GGAGATGCTTAGGAGAGGTGC 59.930 57.143 0.00 0.00 0.00 5.01
219 220 1.691434 GGGAGATGCTTAGGAGAGGTG 59.309 57.143 0.00 0.00 0.00 4.00
220 221 1.292242 TGGGAGATGCTTAGGAGAGGT 59.708 52.381 0.00 0.00 0.00 3.85
221 222 2.094100 TGGGAGATGCTTAGGAGAGG 57.906 55.000 0.00 0.00 0.00 3.69
222 223 3.806507 GCAATGGGAGATGCTTAGGAGAG 60.807 52.174 0.00 0.00 39.46 3.20
223 224 2.105477 GCAATGGGAGATGCTTAGGAGA 59.895 50.000 0.00 0.00 39.46 3.71
224 225 2.158711 TGCAATGGGAGATGCTTAGGAG 60.159 50.000 0.00 0.00 42.97 3.69
225 226 1.845791 TGCAATGGGAGATGCTTAGGA 59.154 47.619 0.00 0.00 42.97 2.94
226 227 1.952296 GTGCAATGGGAGATGCTTAGG 59.048 52.381 0.00 0.00 42.97 2.69
227 228 2.646930 TGTGCAATGGGAGATGCTTAG 58.353 47.619 0.00 0.00 42.97 2.18
228 229 2.804986 TGTGCAATGGGAGATGCTTA 57.195 45.000 0.00 0.00 42.97 3.09
229 230 1.822990 CTTGTGCAATGGGAGATGCTT 59.177 47.619 0.00 0.00 42.97 3.91
230 231 1.005097 TCTTGTGCAATGGGAGATGCT 59.995 47.619 0.00 0.00 42.97 3.79
231 232 1.466856 TCTTGTGCAATGGGAGATGC 58.533 50.000 0.00 0.00 42.86 3.91
232 233 3.552875 AGATCTTGTGCAATGGGAGATG 58.447 45.455 0.00 0.00 0.00 2.90
233 234 3.947612 AGATCTTGTGCAATGGGAGAT 57.052 42.857 0.00 0.00 0.00 2.75
234 235 4.384537 CCTTAGATCTTGTGCAATGGGAGA 60.385 45.833 0.00 0.00 0.00 3.71
235 236 3.881688 CCTTAGATCTTGTGCAATGGGAG 59.118 47.826 0.00 0.00 0.00 4.30
236 237 3.889815 CCTTAGATCTTGTGCAATGGGA 58.110 45.455 0.00 0.00 0.00 4.37
237 238 2.360165 GCCTTAGATCTTGTGCAATGGG 59.640 50.000 0.00 0.00 0.00 4.00
238 239 2.360165 GGCCTTAGATCTTGTGCAATGG 59.640 50.000 0.00 0.00 0.00 3.16
239 240 3.018856 TGGCCTTAGATCTTGTGCAATG 58.981 45.455 3.32 0.00 0.00 2.82
240 241 3.019564 GTGGCCTTAGATCTTGTGCAAT 58.980 45.455 3.32 0.00 0.00 3.56
241 242 2.436417 GTGGCCTTAGATCTTGTGCAA 58.564 47.619 3.32 0.00 0.00 4.08
242 243 1.675714 CGTGGCCTTAGATCTTGTGCA 60.676 52.381 3.32 0.00 0.00 4.57
243 244 1.009829 CGTGGCCTTAGATCTTGTGC 58.990 55.000 3.32 0.68 0.00 4.57
244 245 2.386661 ACGTGGCCTTAGATCTTGTG 57.613 50.000 3.32 0.00 0.00 3.33
245 246 2.159282 CGTACGTGGCCTTAGATCTTGT 60.159 50.000 7.22 0.00 0.00 3.16
246 247 2.098607 TCGTACGTGGCCTTAGATCTTG 59.901 50.000 16.05 0.00 0.00 3.02
247 248 2.372264 TCGTACGTGGCCTTAGATCTT 58.628 47.619 16.05 0.00 0.00 2.40
248 249 2.048444 TCGTACGTGGCCTTAGATCT 57.952 50.000 16.05 0.00 0.00 2.75
249 250 3.666374 CGTATCGTACGTGGCCTTAGATC 60.666 52.174 16.05 0.00 46.41 2.75
250 251 2.225019 CGTATCGTACGTGGCCTTAGAT 59.775 50.000 16.05 0.21 46.41 1.98
251 252 1.599071 CGTATCGTACGTGGCCTTAGA 59.401 52.381 16.05 0.00 46.41 2.10
344 443 1.580658 TGATGGATAGGGGAGTGGAGT 59.419 52.381 0.00 0.00 0.00 3.85
371 470 3.582647 TCCAGCTACAAGACAGGATCAAA 59.417 43.478 0.00 0.00 0.00 2.69
437 546 2.040278 AGCATGGCCTTTGTCTTAGTGA 59.960 45.455 3.32 0.00 0.00 3.41
440 549 5.841957 ATAAAGCATGGCCTTTGTCTTAG 57.158 39.130 3.32 0.00 36.50 2.18
443 552 4.527816 TGAAATAAAGCATGGCCTTTGTCT 59.472 37.500 3.32 1.13 36.50 3.41
444 553 4.819769 TGAAATAAAGCATGGCCTTTGTC 58.180 39.130 3.32 0.00 36.50 3.18
445 554 4.888326 TGAAATAAAGCATGGCCTTTGT 57.112 36.364 3.32 0.00 36.50 2.83
468 577 2.111043 CCTGTGTGGCGGACAAGT 59.889 61.111 0.00 0.00 35.91 3.16
520 629 5.565259 CGCATGCTTAATAATTCGTTGATCC 59.435 40.000 17.13 0.00 0.00 3.36
554 663 5.935206 GCCTAGCAGTCTTTTCTTCTAAACT 59.065 40.000 0.00 0.00 0.00 2.66
574 683 7.998383 ACAATATATTTGAACACTGATGGCCTA 59.002 33.333 3.32 0.00 0.00 3.93
582 691 8.671921 AGAGCTGAACAATATATTTGAACACTG 58.328 33.333 0.00 0.00 0.00 3.66
601 710 4.348486 AGTCCAAACTGATAGAGAGCTGA 58.652 43.478 0.00 0.00 33.32 4.26
603 712 5.753721 AAAGTCCAAACTGATAGAGAGCT 57.246 39.130 0.00 0.00 35.36 4.09
613 722 6.538381 ACCAATTGCTTTAAAAGTCCAAACTG 59.462 34.615 0.00 0.00 35.36 3.16
634 743 8.756927 TCATTATTAAATTCATGCTCCAACCAA 58.243 29.630 0.00 0.00 0.00 3.67
649 758 5.630121 TCGGCTCCCATGTCATTATTAAAT 58.370 37.500 0.00 0.00 0.00 1.40
650 759 5.042463 TCGGCTCCCATGTCATTATTAAA 57.958 39.130 0.00 0.00 0.00 1.52
651 760 4.698201 TCGGCTCCCATGTCATTATTAA 57.302 40.909 0.00 0.00 0.00 1.40
652 761 4.698201 TTCGGCTCCCATGTCATTATTA 57.302 40.909 0.00 0.00 0.00 0.98
653 762 3.576078 TTCGGCTCCCATGTCATTATT 57.424 42.857 0.00 0.00 0.00 1.40
654 763 3.576078 TTTCGGCTCCCATGTCATTAT 57.424 42.857 0.00 0.00 0.00 1.28
655 764 3.213506 CATTTCGGCTCCCATGTCATTA 58.786 45.455 0.00 0.00 0.00 1.90
656 765 2.026641 CATTTCGGCTCCCATGTCATT 58.973 47.619 0.00 0.00 0.00 2.57
657 766 1.064463 ACATTTCGGCTCCCATGTCAT 60.064 47.619 0.00 0.00 0.00 3.06
658 767 0.327924 ACATTTCGGCTCCCATGTCA 59.672 50.000 0.00 0.00 0.00 3.58
659 768 1.017387 GACATTTCGGCTCCCATGTC 58.983 55.000 0.00 0.00 38.97 3.06
664 773 1.339151 ACTCAAGACATTTCGGCTCCC 60.339 52.381 0.00 0.00 0.00 4.30
665 774 2.100605 ACTCAAGACATTTCGGCTCC 57.899 50.000 0.00 0.00 0.00 4.70
675 802 4.897509 ATGATCCACTCAACTCAAGACA 57.102 40.909 0.00 0.00 37.44 3.41
733 1590 7.261829 AGGAGCTTTAGTACACTTATCGTAG 57.738 40.000 0.00 0.00 0.00 3.51
747 1604 7.436933 AGAAAACATTTTTGGAGGAGCTTTAG 58.563 34.615 0.00 0.00 0.00 1.85
894 2189 1.531602 AGGTTGGCTTGGGTTCTGC 60.532 57.895 0.00 0.00 0.00 4.26
972 2278 4.697514 TGTTCTCTTGAGACCTTGTCTTG 58.302 43.478 0.00 0.00 43.53 3.02
994 2300 0.184451 ATGATGGCCGCCATTCTCTT 59.816 50.000 25.80 9.89 45.26 2.85
1012 2318 2.862597 AGGAGAAGTAGGAGGTGGAGAT 59.137 50.000 0.00 0.00 0.00 2.75
1013 2319 2.242708 GAGGAGAAGTAGGAGGTGGAGA 59.757 54.545 0.00 0.00 0.00 3.71
1227 2569 3.169099 CGGGATCTCATGGTAGGAGAAT 58.831 50.000 0.00 0.00 44.01 2.40
1397 2742 6.052360 TGCTTTACTACATGTGAACAAGTCA 58.948 36.000 9.11 5.85 0.00 3.41
1409 2754 8.275040 AGATTTCCCTAACATGCTTTACTACAT 58.725 33.333 0.00 0.00 0.00 2.29
1464 4538 6.727824 ACTAATCACCGAGAAAACAGAATG 57.272 37.500 0.00 0.00 46.00 2.67
1465 4539 7.661847 AGAAACTAATCACCGAGAAAACAGAAT 59.338 33.333 0.00 0.00 0.00 2.40
1466 4540 6.990349 AGAAACTAATCACCGAGAAAACAGAA 59.010 34.615 0.00 0.00 0.00 3.02
1467 4541 6.522054 AGAAACTAATCACCGAGAAAACAGA 58.478 36.000 0.00 0.00 0.00 3.41
1468 4542 6.787085 AGAAACTAATCACCGAGAAAACAG 57.213 37.500 0.00 0.00 0.00 3.16
1469 4543 6.990349 AGAAGAAACTAATCACCGAGAAAACA 59.010 34.615 0.00 0.00 0.00 2.83
1470 4544 7.422878 AGAAGAAACTAATCACCGAGAAAAC 57.577 36.000 0.00 0.00 0.00 2.43
1471 4545 7.713507 TGAAGAAGAAACTAATCACCGAGAAAA 59.286 33.333 0.00 0.00 0.00 2.29
1472 4546 7.214381 TGAAGAAGAAACTAATCACCGAGAAA 58.786 34.615 0.00 0.00 0.00 2.52
1473 4547 6.755206 TGAAGAAGAAACTAATCACCGAGAA 58.245 36.000 0.00 0.00 0.00 2.87
1474 4548 6.340962 TGAAGAAGAAACTAATCACCGAGA 57.659 37.500 0.00 0.00 0.00 4.04
1475 4549 6.813649 TCATGAAGAAGAAACTAATCACCGAG 59.186 38.462 0.00 0.00 0.00 4.63
1476 4550 6.697395 TCATGAAGAAGAAACTAATCACCGA 58.303 36.000 0.00 0.00 0.00 4.69
1477 4551 6.968131 TCATGAAGAAGAAACTAATCACCG 57.032 37.500 0.00 0.00 0.00 4.94
1497 4571 8.651589 AATTGATCAGCCATGAGATTTATCAT 57.348 30.769 0.00 0.00 40.59 2.45
1502 4576 5.240183 CGGTAATTGATCAGCCATGAGATTT 59.760 40.000 0.00 0.00 39.29 2.17
1505 4579 3.134623 ACGGTAATTGATCAGCCATGAGA 59.865 43.478 0.00 0.00 39.29 3.27
1583 4697 2.196382 CTGTGCATGCCACTGTCTGC 62.196 60.000 16.68 0.00 44.92 4.26
1753 4898 2.016704 GTCCCGATAGCACGCATCG 61.017 63.158 13.39 13.39 43.80 3.84
1775 4920 1.871039 TGAAAAGCACCGCTCTGTTAC 59.129 47.619 0.00 0.00 38.25 2.50
1783 4928 1.522676 GAAGCTTTTGAAAAGCACCGC 59.477 47.619 35.33 21.05 45.30 5.68
1854 4999 4.762765 AGAGAATAGCTCCGACGACATATT 59.237 41.667 0.00 0.00 45.10 1.28
2076 5241 4.620982 ACTGGTTAAAAGCAAATCACTGC 58.379 39.130 0.00 0.00 42.97 4.40
2077 5242 7.078228 GTCTACTGGTTAAAAGCAAATCACTG 58.922 38.462 0.00 0.00 35.79 3.66
2078 5243 6.770785 TGTCTACTGGTTAAAAGCAAATCACT 59.229 34.615 0.00 0.00 35.79 3.41
2079 5244 6.856426 GTGTCTACTGGTTAAAAGCAAATCAC 59.144 38.462 0.00 0.00 35.79 3.06
2096 5261 1.174783 CTGCGGGTACAGTGTCTACT 58.825 55.000 0.00 0.00 37.75 2.57
2097 5262 1.171308 TCTGCGGGTACAGTGTCTAC 58.829 55.000 0.00 0.00 38.84 2.59
2098 5263 1.913778 TTCTGCGGGTACAGTGTCTA 58.086 50.000 0.00 0.00 38.84 2.59
2099 5264 1.045407 TTTCTGCGGGTACAGTGTCT 58.955 50.000 0.00 0.00 38.84 3.41
2100 5265 1.873698 TTTTCTGCGGGTACAGTGTC 58.126 50.000 0.00 0.00 38.84 3.67
2101 5266 2.335316 TTTTTCTGCGGGTACAGTGT 57.665 45.000 0.00 0.00 38.84 3.55
2198 5392 4.335594 ACAACTTCTTGTTAAGCTGGACAC 59.664 41.667 2.15 0.00 37.31 3.67
2214 5408 3.181487 ACAATCACAACAGCCACAACTTC 60.181 43.478 0.00 0.00 0.00 3.01
2231 5425 7.798596 GTGGGATCATATGATATCCACAATC 57.201 40.000 36.18 23.55 46.57 2.67
2288 5488 3.323691 AGTTAGGTGGCCAATGTTTTTCC 59.676 43.478 7.24 0.65 0.00 3.13
2385 5585 6.983890 GGCACCGATGTAAATCCAATAAAATT 59.016 34.615 0.00 0.00 0.00 1.82
2432 5632 4.253685 ACAATACTTGTCATCTGTTCGGG 58.746 43.478 0.00 0.00 40.56 5.14
2468 5668 1.866853 CTCCCAAGAGCCAAAACGCC 61.867 60.000 0.00 0.00 32.13 5.68
2469 5669 1.581447 CTCCCAAGAGCCAAAACGC 59.419 57.895 0.00 0.00 32.13 4.84
2487 5687 3.382546 ACTGTTCATTTGGGAGCATATGC 59.617 43.478 20.36 20.36 42.49 3.14
2488 5688 6.698008 TTACTGTTCATTTGGGAGCATATG 57.302 37.500 0.00 0.00 0.00 1.78
2489 5689 7.902920 ATTTACTGTTCATTTGGGAGCATAT 57.097 32.000 0.00 0.00 0.00 1.78
2490 5690 7.395772 TGAATTTACTGTTCATTTGGGAGCATA 59.604 33.333 0.00 0.00 31.07 3.14
2491 5691 6.211184 TGAATTTACTGTTCATTTGGGAGCAT 59.789 34.615 0.00 0.00 31.07 3.79
2492 5692 5.538053 TGAATTTACTGTTCATTTGGGAGCA 59.462 36.000 0.00 0.00 31.07 4.26
2493 5693 6.024552 TGAATTTACTGTTCATTTGGGAGC 57.975 37.500 0.00 0.00 31.07 4.70
2494 5694 8.885494 TTTTGAATTTACTGTTCATTTGGGAG 57.115 30.769 0.00 0.00 35.68 4.30
2552 5752 8.428186 ACACTAACAAGAACATCTACGAAAAA 57.572 30.769 0.00 0.00 0.00 1.94
2553 5753 9.531942 TTACACTAACAAGAACATCTACGAAAA 57.468 29.630 0.00 0.00 0.00 2.29
2554 5754 8.971321 GTTACACTAACAAGAACATCTACGAAA 58.029 33.333 0.00 0.00 38.52 3.46
2555 5755 8.136800 TGTTACACTAACAAGAACATCTACGAA 58.863 33.333 0.00 0.00 44.95 3.85
2556 5756 7.650890 TGTTACACTAACAAGAACATCTACGA 58.349 34.615 0.00 0.00 44.95 3.43
2557 5757 7.862741 TGTTACACTAACAAGAACATCTACG 57.137 36.000 0.00 0.00 44.95 3.51
2569 5769 5.984233 CAAGCACTCTTGTTACACTAACA 57.016 39.130 0.00 0.00 46.13 2.41
2581 5781 4.312443 CATGAAAATTGGCAAGCACTCTT 58.688 39.130 5.96 0.00 0.00 2.85
2582 5782 3.863400 GCATGAAAATTGGCAAGCACTCT 60.863 43.478 5.96 0.00 0.00 3.24
2583 5783 2.414138 GCATGAAAATTGGCAAGCACTC 59.586 45.455 5.96 0.45 0.00 3.51
2584 5784 2.419667 GCATGAAAATTGGCAAGCACT 58.580 42.857 5.96 0.00 0.00 4.40
2585 5785 1.127213 CGCATGAAAATTGGCAAGCAC 59.873 47.619 5.96 0.00 0.00 4.40
2586 5786 1.000618 TCGCATGAAAATTGGCAAGCA 59.999 42.857 5.96 1.74 0.00 3.91
2587 5787 1.712401 TCGCATGAAAATTGGCAAGC 58.288 45.000 5.96 0.34 0.00 4.01
2588 5788 3.422085 CGTTTCGCATGAAAATTGGCAAG 60.422 43.478 5.96 0.00 45.22 4.01
2589 5789 2.474359 CGTTTCGCATGAAAATTGGCAA 59.526 40.909 0.68 0.68 45.22 4.52
2590 5790 2.057316 CGTTTCGCATGAAAATTGGCA 58.943 42.857 0.00 0.00 45.22 4.92
2591 5791 1.389784 CCGTTTCGCATGAAAATTGGC 59.610 47.619 0.00 0.00 45.22 4.52
2592 5792 1.991965 CCCGTTTCGCATGAAAATTGG 59.008 47.619 0.00 3.04 45.22 3.16
2593 5793 2.940147 TCCCGTTTCGCATGAAAATTG 58.060 42.857 0.00 0.00 45.22 2.32
2594 5794 3.192422 TCATCCCGTTTCGCATGAAAATT 59.808 39.130 0.00 0.00 45.22 1.82
2595 5795 2.752354 TCATCCCGTTTCGCATGAAAAT 59.248 40.909 0.00 0.00 45.22 1.82
2596 5796 2.095466 GTCATCCCGTTTCGCATGAAAA 60.095 45.455 0.00 0.00 45.22 2.29
2597 5797 1.466950 GTCATCCCGTTTCGCATGAAA 59.533 47.619 0.00 0.00 41.69 2.69
2598 5798 1.083489 GTCATCCCGTTTCGCATGAA 58.917 50.000 0.00 0.00 0.00 2.57
2599 5799 1.081556 CGTCATCCCGTTTCGCATGA 61.082 55.000 0.00 0.00 0.00 3.07
2600 5800 1.348250 CGTCATCCCGTTTCGCATG 59.652 57.895 0.00 0.00 0.00 4.06
2601 5801 1.813753 CCGTCATCCCGTTTCGCAT 60.814 57.895 0.00 0.00 0.00 4.73
2602 5802 2.433491 CCGTCATCCCGTTTCGCA 60.433 61.111 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.