Multiple sequence alignment - TraesCS3B01G428500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G428500 chr3B 100.000 6122 0 0 877 6998 667388273 667382152 0.000000e+00 11306.0
1 TraesCS3B01G428500 chr3B 100.000 615 0 0 1 615 667389149 667388535 0.000000e+00 1136.0
2 TraesCS3B01G428500 chr3B 96.183 131 5 0 3655 3785 70866471 70866341 1.530000e-51 215.0
3 TraesCS3B01G428500 chr3B 89.571 163 13 4 3623 3783 201088094 201088254 3.310000e-48 204.0
4 TraesCS3B01G428500 chr3A 94.059 2727 116 20 3806 6500 643748996 643746284 0.000000e+00 4096.0
5 TraesCS3B01G428500 chr3A 93.337 1891 84 9 1521 3392 643750860 643748993 0.000000e+00 2756.0
6 TraesCS3B01G428500 chr3A 93.364 437 28 1 878 1314 643751311 643750876 0.000000e+00 645.0
7 TraesCS3B01G428500 chr3A 89.669 484 32 6 6522 6998 643745882 643745410 1.000000e-167 601.0
8 TraesCS3B01G428500 chr3A 90.419 334 15 12 283 615 643751730 643751413 2.330000e-114 424.0
9 TraesCS3B01G428500 chr3A 88.926 298 29 2 1 298 643752038 643751745 1.430000e-96 364.0
10 TraesCS3B01G428500 chr3D 95.190 2557 93 15 877 3427 505561315 505558783 0.000000e+00 4013.0
11 TraesCS3B01G428500 chr3D 94.801 1404 56 10 5076 6471 505557311 505555917 0.000000e+00 2172.0
12 TraesCS3B01G428500 chr3D 95.296 1318 43 8 3781 5079 505558708 505557391 0.000000e+00 2073.0
13 TraesCS3B01G428500 chr3D 87.955 440 27 12 179 613 505561837 505561419 4.880000e-136 496.0
14 TraesCS3B01G428500 chr3D 91.525 118 10 0 1 118 505562059 505561942 5.620000e-36 163.0
15 TraesCS3B01G428500 chr3D 97.015 67 2 0 3576 3642 505558793 505558727 5.740000e-21 113.0
16 TraesCS3B01G428500 chr2D 89.238 446 31 7 6561 6998 38483598 38484034 6.170000e-150 542.0
17 TraesCS3B01G428500 chr2D 93.571 140 8 1 3648 3787 445188727 445188589 2.560000e-49 207.0
18 TraesCS3B01G428500 chr4D 89.714 175 16 2 6824 6998 124281845 124282017 9.140000e-54 222.0
19 TraesCS3B01G428500 chr7B 97.656 128 3 0 3655 3782 424525172 424525045 3.290000e-53 220.0
20 TraesCS3B01G428500 chr7B 95.420 131 6 0 3653 3783 311539751 311539621 7.110000e-50 209.0
21 TraesCS3B01G428500 chr7B 92.806 139 9 1 3648 3786 115521550 115521687 4.280000e-47 200.0
22 TraesCS3B01G428500 chr1B 92.258 155 11 1 3422 3576 115371861 115371708 1.180000e-52 219.0
23 TraesCS3B01G428500 chr1A 96.124 129 5 0 3656 3784 558942531 558942659 1.980000e-50 211.0
24 TraesCS3B01G428500 chr6B 90.446 157 13 2 3424 3579 552512225 552512070 9.200000e-49 206.0
25 TraesCS3B01G428500 chr4A 93.478 138 7 2 3652 3789 96956316 96956181 3.310000e-48 204.0
26 TraesCS3B01G428500 chrUn 87.931 174 13 6 3653 3824 23715010 23715177 1.540000e-46 198.0
27 TraesCS3B01G428500 chr5A 89.744 156 12 4 3422 3575 85297598 85297445 5.540000e-46 196.0
28 TraesCS3B01G428500 chr2B 84.746 59 9 0 3655 3713 72818606 72818548 7.580000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G428500 chr3B 667382152 667389149 6997 True 6221 11306 100.000000 1 6998 2 chr3B.!!$R2 6997
1 TraesCS3B01G428500 chr3A 643745410 643752038 6628 True 1481 4096 91.629000 1 6998 6 chr3A.!!$R1 6997
2 TraesCS3B01G428500 chr3D 505555917 505562059 6142 True 1505 4013 93.630333 1 6471 6 chr3D.!!$R1 6470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 663 0.753848 GACCTCTCCCTTCTCCTCCG 60.754 65.000 0.00 0.00 0.00 4.63 F
1196 1294 0.610174 TCTCTGCATTCTGCTCGGTT 59.390 50.000 0.34 0.00 45.31 4.44 F
1280 1378 0.737367 GTCAGTGCTGTGCTGCGATA 60.737 55.000 0.00 0.00 34.21 2.92 F
3084 3227 0.905809 ATGCATGGGCCACACATGTT 60.906 50.000 19.36 7.11 45.68 2.71 F
3778 3926 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
3780 3928 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
5619 5887 1.796459 CAAGTGCCAAGCAGCAAAATC 59.204 47.619 0.00 0.00 46.19 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 2558 1.204467 TGAAATCGGGCAAGGAATTGC 59.796 47.619 4.40 4.4 46.64 3.56 R
3090 3233 1.133025 CGAAAGAATGTGTGCCCATCC 59.867 52.381 0.00 0.0 0.00 3.51 R
3223 3366 1.134280 GTGTACTCCAGATGCAGCCAT 60.134 52.381 0.00 0.0 0.00 4.40 R
4046 4196 0.674895 GGCAGGTTACTCAGGCACAG 60.675 60.000 0.00 0.0 0.00 3.66 R
5118 5384 1.532523 TGGTGTGTACATGCCATGTG 58.467 50.000 20.36 0.0 44.60 3.21 R
5668 5936 1.664151 GCCGCACCAAGTATCAACTAC 59.336 52.381 0.00 0.0 33.75 2.73 R
6790 7463 0.684535 TGCGATGGACAGGTCTCAAA 59.315 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.201517 CAATTATGATGGACCAAAGTAAGCG 58.798 40.000 0.00 0.00 0.00 4.68
58 59 2.202878 TAAGCGCTGCGGTGATCC 60.203 61.111 28.08 7.27 37.73 3.36
59 60 3.012859 TAAGCGCTGCGGTGATCCA 62.013 57.895 28.08 7.97 37.73 3.41
102 103 5.518812 CGAGTTTTTCACATTCATCCACAA 58.481 37.500 0.00 0.00 0.00 3.33
115 116 2.341846 TCCACAAGGACACCAAAGTC 57.658 50.000 0.00 0.00 39.61 3.01
204 261 4.142708 TGACGGTGGATTTTGAATTGATCG 60.143 41.667 0.00 0.00 0.00 3.69
214 271 8.711457 GGATTTTGAATTGATCGTCATGTTTTT 58.289 29.630 0.00 0.00 0.00 1.94
215 272 9.731519 GATTTTGAATTGATCGTCATGTTTTTC 57.268 29.630 0.00 0.00 0.00 2.29
275 337 7.744087 AAAGTAGTTCAGCACAACATCATAA 57.256 32.000 1.13 0.00 0.00 1.90
284 346 7.890515 TCAGCACAACATCATAATTTGGTAAA 58.109 30.769 0.00 0.00 0.00 2.01
326 419 2.973224 CGTGCAGAAACGGAAGAAAATG 59.027 45.455 0.00 0.00 39.89 2.32
430 523 5.860714 GGGACCTCCTATGGAAACAAGTAAC 60.861 48.000 0.00 0.00 39.30 2.50
557 655 1.287739 CTCTCCTCTGACCTCTCCCTT 59.712 57.143 0.00 0.00 0.00 3.95
558 656 1.286553 TCTCCTCTGACCTCTCCCTTC 59.713 57.143 0.00 0.00 0.00 3.46
559 657 1.287739 CTCCTCTGACCTCTCCCTTCT 59.712 57.143 0.00 0.00 0.00 2.85
561 659 1.687996 CCTCTGACCTCTCCCTTCTCC 60.688 61.905 0.00 0.00 0.00 3.71
562 660 1.287739 CTCTGACCTCTCCCTTCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
565 663 0.753848 GACCTCTCCCTTCTCCTCCG 60.754 65.000 0.00 0.00 0.00 4.63
583 681 4.883354 CCCCGCTCCTCATTGCCC 62.883 72.222 0.00 0.00 0.00 5.36
584 682 4.883354 CCCGCTCCTCATTGCCCC 62.883 72.222 0.00 0.00 0.00 5.80
585 683 4.883354 CCGCTCCTCATTGCCCCC 62.883 72.222 0.00 0.00 0.00 5.40
586 684 3.801997 CGCTCCTCATTGCCCCCT 61.802 66.667 0.00 0.00 0.00 4.79
1196 1294 0.610174 TCTCTGCATTCTGCTCGGTT 59.390 50.000 0.34 0.00 45.31 4.44
1198 1296 1.129998 CTCTGCATTCTGCTCGGTTTG 59.870 52.381 0.34 0.00 45.31 2.93
1201 1299 1.469703 TGCATTCTGCTCGGTTTGATG 59.530 47.619 0.34 0.00 45.31 3.07
1246 1344 4.092771 TCGCTAAGTGTCATACTGTCAC 57.907 45.455 0.00 0.00 40.26 3.67
1253 1351 2.912967 GTGTCATACTGTCACGTAACGG 59.087 50.000 0.00 0.00 28.02 4.44
1280 1378 0.737367 GTCAGTGCTGTGCTGCGATA 60.737 55.000 0.00 0.00 34.21 2.92
1343 1441 8.534333 TTTATGCATATAGTTAGCTACAGTGC 57.466 34.615 7.36 10.69 35.02 4.40
1345 1443 5.289595 TGCATATAGTTAGCTACAGTGCAC 58.710 41.667 9.40 9.40 37.30 4.57
1350 1448 4.442375 AGTTAGCTACAGTGCACACTAG 57.558 45.455 21.04 16.69 40.20 2.57
1379 1481 5.303971 AGAGAAAGTGTGGAGTTTCATGAG 58.696 41.667 0.00 0.00 42.05 2.90
1407 1509 8.744652 TCTGTTTTCCAGTTTCAGTTTCATTTA 58.255 29.630 0.00 0.00 42.19 1.40
1461 1563 2.135933 GCCGGTACATGAGCAAGTATC 58.864 52.381 1.90 0.00 0.00 2.24
1474 1576 6.582636 TGAGCAAGTATCGATATTTTGGAGT 58.417 36.000 23.04 6.02 0.00 3.85
1477 1579 6.823689 AGCAAGTATCGATATTTTGGAGTGTT 59.176 34.615 23.04 6.65 0.00 3.32
1727 1830 6.447162 TCTCCACTGTATATTGATGTTAGCG 58.553 40.000 0.00 0.00 0.00 4.26
1740 1843 7.667043 TTGATGTTAGCGTTTGTCTAGAAAT 57.333 32.000 0.00 0.00 0.00 2.17
1766 1869 1.277557 CCAGCTGCCTGTAGAAGAACT 59.722 52.381 8.66 0.00 37.38 3.01
1798 1916 7.651304 AGACTTTTCTATAACTCATCGCTGATG 59.349 37.037 10.94 10.94 41.00 3.07
1823 1941 9.832445 TGCCTAACAGTAAATTAATTCTAGGAG 57.168 33.333 0.10 0.00 0.00 3.69
1845 1966 8.381636 AGGAGTTAAGACTAGAGTAACAGTGTA 58.618 37.037 0.00 0.00 35.88 2.90
1987 2108 7.859325 ATTGGTATACATGTGTAAAGTGGAC 57.141 36.000 9.11 0.00 33.76 4.02
2126 2247 6.542005 TGTAATCCGTTGCTTTGATATGATGT 59.458 34.615 0.00 0.00 0.00 3.06
2138 2259 8.615211 GCTTTGATATGATGTGTCTTTATGTCA 58.385 33.333 0.00 0.00 0.00 3.58
2321 2442 4.389077 CCTTTCGTAGTGATTTCTGTGACC 59.611 45.833 0.00 0.00 0.00 4.02
2333 2454 2.816411 TCTGTGACCGACTCCCTTATT 58.184 47.619 0.00 0.00 0.00 1.40
2437 2558 4.272018 GTGAGTAGCTATGCAACATCTTGG 59.728 45.833 0.00 0.00 0.00 3.61
2458 2579 3.155093 CAATTCCTTGCCCGATTTCAG 57.845 47.619 0.00 0.00 0.00 3.02
3020 3141 7.454225 AGTTTCCTTCTTTACAAGATGCTAGT 58.546 34.615 0.00 0.00 37.38 2.57
3027 3148 6.166279 TCTTTACAAGATGCTAGTTGTCTGG 58.834 40.000 0.12 0.00 37.96 3.86
3039 3160 2.633481 AGTTGTCTGGGTCTTGGTAGTC 59.367 50.000 0.00 0.00 0.00 2.59
3080 3223 3.383681 GCATGCATGGGCCACACA 61.384 61.111 27.34 11.15 40.13 3.72
3081 3224 2.727392 GCATGCATGGGCCACACAT 61.727 57.895 27.34 13.30 40.13 3.21
3082 3225 1.142965 CATGCATGGGCCACACATG 59.857 57.895 26.92 26.92 46.45 3.21
3083 3226 1.305465 ATGCATGGGCCACACATGT 60.305 52.632 19.36 0.00 45.68 3.21
3084 3227 0.905809 ATGCATGGGCCACACATGTT 60.906 50.000 19.36 7.11 45.68 2.71
3085 3228 1.216178 GCATGGGCCACACATGTTC 59.784 57.895 9.28 3.27 45.68 3.18
3086 3229 1.534336 GCATGGGCCACACATGTTCA 61.534 55.000 9.28 0.00 45.68 3.18
3087 3230 1.187974 CATGGGCCACACATGTTCAT 58.812 50.000 9.28 0.00 40.54 2.57
3088 3231 1.551430 CATGGGCCACACATGTTCATT 59.449 47.619 9.28 0.00 40.54 2.57
3089 3232 1.714541 TGGGCCACACATGTTCATTT 58.285 45.000 0.00 0.00 0.00 2.32
3090 3233 1.343789 TGGGCCACACATGTTCATTTG 59.656 47.619 0.00 0.00 0.00 2.32
3091 3234 1.338011 GGGCCACACATGTTCATTTGG 60.338 52.381 4.39 0.00 0.00 3.28
3092 3235 1.617850 GGCCACACATGTTCATTTGGA 59.382 47.619 0.00 0.00 0.00 3.53
3093 3236 2.234414 GGCCACACATGTTCATTTGGAT 59.766 45.455 0.00 0.00 0.00 3.41
3094 3237 3.255725 GCCACACATGTTCATTTGGATG 58.744 45.455 0.00 0.00 34.46 3.51
3095 3238 3.852286 CCACACATGTTCATTTGGATGG 58.148 45.455 0.00 0.79 33.93 3.51
3096 3239 3.368635 CCACACATGTTCATTTGGATGGG 60.369 47.826 0.00 0.00 33.93 4.00
3097 3240 2.234414 ACACATGTTCATTTGGATGGGC 59.766 45.455 0.00 0.00 33.93 5.36
3098 3241 2.234168 CACATGTTCATTTGGATGGGCA 59.766 45.455 0.00 0.00 33.93 5.36
3099 3242 2.234414 ACATGTTCATTTGGATGGGCAC 59.766 45.455 0.00 0.00 33.93 5.01
3100 3243 2.006805 TGTTCATTTGGATGGGCACA 57.993 45.000 0.00 0.00 33.93 4.57
3101 3244 1.617850 TGTTCATTTGGATGGGCACAC 59.382 47.619 0.00 0.00 33.93 3.82
3223 3366 4.776837 AGTCATTAACATTCATTTGGGGCA 59.223 37.500 0.00 0.00 0.00 5.36
3436 3579 9.743057 ATATTTATAAGCATGAGAGATAGCGTC 57.257 33.333 0.00 0.00 0.00 5.19
3437 3580 6.825944 TTATAAGCATGAGAGATAGCGTCT 57.174 37.500 0.00 0.00 40.81 4.18
3438 3581 7.923414 TTATAAGCATGAGAGATAGCGTCTA 57.077 36.000 0.00 0.00 37.29 2.59
3439 3582 4.764679 AAGCATGAGAGATAGCGTCTAG 57.235 45.455 0.00 0.00 37.29 2.43
3440 3583 3.750371 AGCATGAGAGATAGCGTCTAGT 58.250 45.455 0.00 0.00 37.29 2.57
3441 3584 3.751175 AGCATGAGAGATAGCGTCTAGTC 59.249 47.826 0.00 0.00 37.29 2.59
3442 3585 3.119990 GCATGAGAGATAGCGTCTAGTCC 60.120 52.174 0.00 0.00 37.29 3.85
3443 3586 2.756829 TGAGAGATAGCGTCTAGTCCG 58.243 52.381 0.00 0.00 37.29 4.79
3450 3593 4.554363 CGTCTAGTCCGCGGGCTG 62.554 72.222 41.11 28.90 0.00 4.85
3451 3594 4.874977 GTCTAGTCCGCGGGCTGC 62.875 72.222 41.11 26.01 41.47 5.25
3453 3596 4.148825 CTAGTCCGCGGGCTGCTT 62.149 66.667 41.11 19.10 43.27 3.91
3454 3597 4.451150 TAGTCCGCGGGCTGCTTG 62.451 66.667 41.11 5.31 43.27 4.01
3464 3607 2.436646 GCTGCTTGCCCGCTTAGA 60.437 61.111 0.00 0.00 35.15 2.10
3465 3608 1.821332 GCTGCTTGCCCGCTTAGAT 60.821 57.895 0.00 0.00 35.15 1.98
3466 3609 2.020131 CTGCTTGCCCGCTTAGATG 58.980 57.895 0.00 0.00 0.00 2.90
3467 3610 0.745845 CTGCTTGCCCGCTTAGATGT 60.746 55.000 0.00 0.00 0.00 3.06
3468 3611 0.744414 TGCTTGCCCGCTTAGATGTC 60.744 55.000 0.00 0.00 0.00 3.06
3469 3612 1.766143 GCTTGCCCGCTTAGATGTCG 61.766 60.000 0.00 0.00 0.00 4.35
3470 3613 0.179111 CTTGCCCGCTTAGATGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
3471 3614 0.464036 TTGCCCGCTTAGATGTCGAT 59.536 50.000 0.00 0.00 0.00 3.59
3472 3615 0.249447 TGCCCGCTTAGATGTCGATG 60.249 55.000 0.00 0.00 0.00 3.84
3473 3616 0.249489 GCCCGCTTAGATGTCGATGT 60.249 55.000 0.00 0.00 0.00 3.06
3474 3617 1.000607 GCCCGCTTAGATGTCGATGTA 60.001 52.381 0.00 0.00 0.00 2.29
3475 3618 2.662700 CCCGCTTAGATGTCGATGTAC 58.337 52.381 0.00 0.00 0.00 2.90
3476 3619 2.607282 CCCGCTTAGATGTCGATGTACC 60.607 54.545 0.00 0.00 0.00 3.34
3477 3620 2.293677 CCGCTTAGATGTCGATGTACCT 59.706 50.000 0.00 0.00 0.00 3.08
3478 3621 3.556513 CGCTTAGATGTCGATGTACCTC 58.443 50.000 0.00 0.00 0.00 3.85
3479 3622 3.251245 CGCTTAGATGTCGATGTACCTCT 59.749 47.826 0.00 0.00 0.00 3.69
3480 3623 4.261238 CGCTTAGATGTCGATGTACCTCTT 60.261 45.833 0.00 0.00 0.00 2.85
3481 3624 5.593010 GCTTAGATGTCGATGTACCTCTTT 58.407 41.667 0.00 0.00 0.00 2.52
3482 3625 5.688176 GCTTAGATGTCGATGTACCTCTTTC 59.312 44.000 0.00 0.00 0.00 2.62
3483 3626 6.460399 GCTTAGATGTCGATGTACCTCTTTCT 60.460 42.308 0.00 0.00 0.00 2.52
3484 3627 5.923733 AGATGTCGATGTACCTCTTTCTT 57.076 39.130 0.00 0.00 0.00 2.52
3485 3628 6.287589 AGATGTCGATGTACCTCTTTCTTT 57.712 37.500 0.00 0.00 0.00 2.52
3486 3629 6.702329 AGATGTCGATGTACCTCTTTCTTTT 58.298 36.000 0.00 0.00 0.00 2.27
3487 3630 6.814146 AGATGTCGATGTACCTCTTTCTTTTC 59.186 38.462 0.00 0.00 0.00 2.29
3488 3631 5.849510 TGTCGATGTACCTCTTTCTTTTCA 58.150 37.500 0.00 0.00 0.00 2.69
3489 3632 5.926542 TGTCGATGTACCTCTTTCTTTTCAG 59.073 40.000 0.00 0.00 0.00 3.02
3490 3633 4.929808 TCGATGTACCTCTTTCTTTTCAGC 59.070 41.667 0.00 0.00 0.00 4.26
3491 3634 4.093556 CGATGTACCTCTTTCTTTTCAGCC 59.906 45.833 0.00 0.00 0.00 4.85
3492 3635 3.751518 TGTACCTCTTTCTTTTCAGCCC 58.248 45.455 0.00 0.00 0.00 5.19
3493 3636 3.394606 TGTACCTCTTTCTTTTCAGCCCT 59.605 43.478 0.00 0.00 0.00 5.19
3494 3637 3.602205 ACCTCTTTCTTTTCAGCCCTT 57.398 42.857 0.00 0.00 0.00 3.95
3495 3638 3.916035 ACCTCTTTCTTTTCAGCCCTTT 58.084 40.909 0.00 0.00 0.00 3.11
3496 3639 4.290093 ACCTCTTTCTTTTCAGCCCTTTT 58.710 39.130 0.00 0.00 0.00 2.27
3497 3640 4.100035 ACCTCTTTCTTTTCAGCCCTTTTG 59.900 41.667 0.00 0.00 0.00 2.44
3498 3641 4.342092 CCTCTTTCTTTTCAGCCCTTTTGA 59.658 41.667 0.00 0.00 0.00 2.69
3499 3642 5.011431 CCTCTTTCTTTTCAGCCCTTTTGAT 59.989 40.000 0.00 0.00 0.00 2.57
3500 3643 6.089249 TCTTTCTTTTCAGCCCTTTTGATC 57.911 37.500 0.00 0.00 0.00 2.92
3501 3644 4.503741 TTCTTTTCAGCCCTTTTGATCG 57.496 40.909 0.00 0.00 0.00 3.69
3502 3645 2.228822 TCTTTTCAGCCCTTTTGATCGC 59.771 45.455 0.00 0.00 0.00 4.58
3503 3646 1.909700 TTTCAGCCCTTTTGATCGCT 58.090 45.000 0.00 0.00 0.00 4.93
3504 3647 1.909700 TTCAGCCCTTTTGATCGCTT 58.090 45.000 0.00 0.00 0.00 4.68
3505 3648 1.167851 TCAGCCCTTTTGATCGCTTG 58.832 50.000 0.00 0.00 0.00 4.01
3506 3649 1.167851 CAGCCCTTTTGATCGCTTGA 58.832 50.000 0.00 0.00 0.00 3.02
3507 3650 1.747355 CAGCCCTTTTGATCGCTTGAT 59.253 47.619 0.00 0.00 34.17 2.57
3515 3658 3.768633 GATCGCTTGATCACCCACT 57.231 52.632 0.00 0.00 46.42 4.00
3516 3659 1.293924 GATCGCTTGATCACCCACTG 58.706 55.000 0.00 0.00 46.42 3.66
3517 3660 0.615331 ATCGCTTGATCACCCACTGT 59.385 50.000 0.00 0.00 0.00 3.55
3518 3661 0.396435 TCGCTTGATCACCCACTGTT 59.604 50.000 0.00 0.00 0.00 3.16
3519 3662 1.202758 TCGCTTGATCACCCACTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
3520 3663 1.069022 CGCTTGATCACCCACTGTTTG 60.069 52.381 0.00 0.00 0.00 2.93
3521 3664 1.336240 GCTTGATCACCCACTGTTTGC 60.336 52.381 0.00 0.00 0.00 3.68
3522 3665 1.270550 CTTGATCACCCACTGTTTGCC 59.729 52.381 0.00 0.00 0.00 4.52
3523 3666 0.539438 TGATCACCCACTGTTTGCCC 60.539 55.000 0.00 0.00 0.00 5.36
3524 3667 1.586154 GATCACCCACTGTTTGCCCG 61.586 60.000 0.00 0.00 0.00 6.13
3525 3668 3.977244 CACCCACTGTTTGCCCGC 61.977 66.667 0.00 0.00 0.00 6.13
3526 3669 4.204028 ACCCACTGTTTGCCCGCT 62.204 61.111 0.00 0.00 0.00 5.52
3527 3670 3.365265 CCCACTGTTTGCCCGCTC 61.365 66.667 0.00 0.00 0.00 5.03
3528 3671 2.281761 CCACTGTTTGCCCGCTCT 60.282 61.111 0.00 0.00 0.00 4.09
3529 3672 2.328099 CCACTGTTTGCCCGCTCTC 61.328 63.158 0.00 0.00 0.00 3.20
3530 3673 1.302033 CACTGTTTGCCCGCTCTCT 60.302 57.895 0.00 0.00 0.00 3.10
3531 3674 1.004440 ACTGTTTGCCCGCTCTCTC 60.004 57.895 0.00 0.00 0.00 3.20
3532 3675 1.743252 CTGTTTGCCCGCTCTCTCC 60.743 63.158 0.00 0.00 0.00 3.71
3533 3676 2.177594 CTGTTTGCCCGCTCTCTCCT 62.178 60.000 0.00 0.00 0.00 3.69
3534 3677 1.743252 GTTTGCCCGCTCTCTCCTG 60.743 63.158 0.00 0.00 0.00 3.86
3535 3678 3.612247 TTTGCCCGCTCTCTCCTGC 62.612 63.158 0.00 0.00 0.00 4.85
3537 3680 3.780173 GCCCGCTCTCTCCTGCTT 61.780 66.667 0.00 0.00 0.00 3.91
3538 3681 2.427245 GCCCGCTCTCTCCTGCTTA 61.427 63.158 0.00 0.00 0.00 3.09
3539 3682 1.961180 GCCCGCTCTCTCCTGCTTAA 61.961 60.000 0.00 0.00 0.00 1.85
3540 3683 0.755686 CCCGCTCTCTCCTGCTTAAT 59.244 55.000 0.00 0.00 0.00 1.40
3541 3684 1.539929 CCCGCTCTCTCCTGCTTAATG 60.540 57.143 0.00 0.00 0.00 1.90
3542 3685 1.410517 CCGCTCTCTCCTGCTTAATGA 59.589 52.381 0.00 0.00 0.00 2.57
3543 3686 2.159043 CCGCTCTCTCCTGCTTAATGAA 60.159 50.000 0.00 0.00 0.00 2.57
3544 3687 3.525537 CGCTCTCTCCTGCTTAATGAAA 58.474 45.455 0.00 0.00 0.00 2.69
3545 3688 4.125703 CGCTCTCTCCTGCTTAATGAAAT 58.874 43.478 0.00 0.00 0.00 2.17
3546 3689 4.025061 CGCTCTCTCCTGCTTAATGAAATG 60.025 45.833 0.00 0.00 0.00 2.32
3547 3690 5.121811 GCTCTCTCCTGCTTAATGAAATGA 58.878 41.667 0.00 0.00 0.00 2.57
3548 3691 5.587844 GCTCTCTCCTGCTTAATGAAATGAA 59.412 40.000 0.00 0.00 0.00 2.57
3549 3692 6.238429 GCTCTCTCCTGCTTAATGAAATGAAG 60.238 42.308 0.00 0.00 0.00 3.02
3550 3693 5.587844 TCTCTCCTGCTTAATGAAATGAAGC 59.412 40.000 2.80 2.80 44.71 3.86
3551 3694 4.641989 TCTCCTGCTTAATGAAATGAAGCC 59.358 41.667 6.83 0.00 44.01 4.35
3552 3695 4.343231 TCCTGCTTAATGAAATGAAGCCA 58.657 39.130 6.83 0.00 44.01 4.75
3553 3696 4.400251 TCCTGCTTAATGAAATGAAGCCAG 59.600 41.667 6.83 4.96 44.01 4.85
3554 3697 4.400251 CCTGCTTAATGAAATGAAGCCAGA 59.600 41.667 6.83 0.00 44.01 3.86
3555 3698 5.105635 CCTGCTTAATGAAATGAAGCCAGAA 60.106 40.000 6.83 0.00 44.01 3.02
3556 3699 6.343716 TGCTTAATGAAATGAAGCCAGAAA 57.656 33.333 6.83 0.00 44.01 2.52
3557 3700 6.938507 TGCTTAATGAAATGAAGCCAGAAAT 58.061 32.000 6.83 0.00 44.01 2.17
3558 3701 6.814644 TGCTTAATGAAATGAAGCCAGAAATG 59.185 34.615 6.83 0.00 44.01 2.32
3559 3702 6.257193 GCTTAATGAAATGAAGCCAGAAATGG 59.743 38.462 0.00 0.00 39.75 3.16
3570 3713 3.749665 CCAGAAATGGCCACTTCAAAA 57.250 42.857 27.40 0.00 0.00 2.44
3571 3714 4.276058 CCAGAAATGGCCACTTCAAAAT 57.724 40.909 27.40 5.13 0.00 1.82
3572 3715 5.404466 CCAGAAATGGCCACTTCAAAATA 57.596 39.130 27.40 0.00 0.00 1.40
3573 3716 5.792741 CCAGAAATGGCCACTTCAAAATAA 58.207 37.500 27.40 0.00 0.00 1.40
3574 3717 6.229733 CCAGAAATGGCCACTTCAAAATAAA 58.770 36.000 27.40 0.00 0.00 1.40
3575 3718 6.709846 CCAGAAATGGCCACTTCAAAATAAAA 59.290 34.615 27.40 0.00 0.00 1.52
3576 3719 7.391275 CCAGAAATGGCCACTTCAAAATAAAAT 59.609 33.333 27.40 1.71 0.00 1.82
3591 3734 9.023962 TCAAAATAAAATAAGCATGAGTGGTCT 57.976 29.630 0.00 0.00 34.36 3.85
3638 3781 8.364129 TGGTGCAAGTTAAAAGAAAATTGATC 57.636 30.769 0.00 0.00 36.74 2.92
3668 3816 9.349713 CTTGATATCTATATACTCCCTCTGTCC 57.650 40.741 3.98 0.00 0.00 4.02
3669 3817 7.510407 TGATATCTATATACTCCCTCTGTCCG 58.490 42.308 3.98 0.00 0.00 4.79
3670 3818 4.571369 TCTATATACTCCCTCTGTCCGG 57.429 50.000 0.00 0.00 0.00 5.14
3671 3819 4.173594 TCTATATACTCCCTCTGTCCGGA 58.826 47.826 0.00 0.00 0.00 5.14
3672 3820 3.897657 ATATACTCCCTCTGTCCGGAA 57.102 47.619 5.23 0.00 0.00 4.30
3673 3821 2.544844 ATACTCCCTCTGTCCGGAAA 57.455 50.000 5.23 0.00 0.00 3.13
3674 3822 2.544844 TACTCCCTCTGTCCGGAAAT 57.455 50.000 5.23 0.00 0.00 2.17
3675 3823 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3676 3824 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3677 3825 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3678 3826 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3679 3827 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3680 3828 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3681 3829 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3682 3830 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
3683 3831 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
3684 3832 5.160607 TCTGTCCGGAAATACTTGTCATT 57.839 39.130 5.23 0.00 0.00 2.57
3685 3833 6.288941 TCTGTCCGGAAATACTTGTCATTA 57.711 37.500 5.23 0.00 0.00 1.90
3686 3834 6.703319 TCTGTCCGGAAATACTTGTCATTAA 58.297 36.000 5.23 0.00 0.00 1.40
3687 3835 7.162761 TCTGTCCGGAAATACTTGTCATTAAA 58.837 34.615 5.23 0.00 0.00 1.52
3688 3836 7.662258 TCTGTCCGGAAATACTTGTCATTAAAA 59.338 33.333 5.23 0.00 0.00 1.52
3689 3837 8.343168 TGTCCGGAAATACTTGTCATTAAAAT 57.657 30.769 5.23 0.00 0.00 1.82
3690 3838 8.240682 TGTCCGGAAATACTTGTCATTAAAATG 58.759 33.333 5.23 0.00 37.75 2.32
3691 3839 8.455682 GTCCGGAAATACTTGTCATTAAAATGA 58.544 33.333 5.23 1.23 42.78 2.57
3692 3840 9.015367 TCCGGAAATACTTGTCATTAAAATGAA 57.985 29.630 0.00 0.00 46.13 2.57
3693 3841 9.801873 CCGGAAATACTTGTCATTAAAATGAAT 57.198 29.630 6.95 0.00 46.13 2.57
3701 3849 9.942850 ACTTGTCATTAAAATGAATAAAAGGGG 57.057 29.630 6.95 0.00 46.13 4.79
3715 3863 8.103305 TGAATAAAAGGGGATGTATCTAGATGC 58.897 37.037 15.79 14.54 0.00 3.91
3716 3864 5.912149 AAAAGGGGATGTATCTAGATGCA 57.088 39.130 23.38 23.38 37.79 3.96
3717 3865 6.460103 AAAAGGGGATGTATCTAGATGCAT 57.540 37.500 29.54 29.54 44.84 3.96
3718 3866 6.460103 AAAGGGGATGTATCTAGATGCATT 57.540 37.500 29.66 16.30 42.77 3.56
3719 3867 6.460103 AAGGGGATGTATCTAGATGCATTT 57.540 37.500 29.66 19.93 42.77 2.32
3720 3868 6.460103 AGGGGATGTATCTAGATGCATTTT 57.540 37.500 29.66 14.70 42.77 1.82
3721 3869 7.574021 AGGGGATGTATCTAGATGCATTTTA 57.426 36.000 29.66 8.65 42.77 1.52
3722 3870 7.988937 AGGGGATGTATCTAGATGCATTTTAA 58.011 34.615 29.66 8.00 42.77 1.52
3723 3871 8.618385 AGGGGATGTATCTAGATGCATTTTAAT 58.382 33.333 29.66 13.41 42.77 1.40
3724 3872 9.247861 GGGGATGTATCTAGATGCATTTTAATT 57.752 33.333 29.66 12.78 42.77 1.40
3753 3901 9.753674 AGATACATCCCTTTTTGTCTATTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
3756 3904 8.421249 ACATCCCTTTTTGTCTATTTTGATGA 57.579 30.769 0.00 0.00 32.39 2.92
3757 3905 8.306761 ACATCCCTTTTTGTCTATTTTGATGAC 58.693 33.333 0.00 0.00 32.39 3.06
3758 3906 7.831691 TCCCTTTTTGTCTATTTTGATGACA 57.168 32.000 0.00 0.00 38.71 3.58
3759 3907 8.243961 TCCCTTTTTGTCTATTTTGATGACAA 57.756 30.769 0.00 0.00 45.31 3.18
3760 3908 8.359642 TCCCTTTTTGTCTATTTTGATGACAAG 58.640 33.333 7.63 0.00 46.72 3.16
3761 3909 8.143835 CCCTTTTTGTCTATTTTGATGACAAGT 58.856 33.333 7.63 0.00 46.72 3.16
3768 3916 8.664798 TGTCTATTTTGATGACAAGTATTTCCG 58.335 33.333 0.00 0.00 37.71 4.30
3769 3917 8.122952 GTCTATTTTGATGACAAGTATTTCCGG 58.877 37.037 0.00 0.00 37.32 5.14
3770 3918 8.044309 TCTATTTTGATGACAAGTATTTCCGGA 58.956 33.333 0.00 0.00 37.32 5.14
3771 3919 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3772 3920 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3773 3921 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3774 3922 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3775 3923 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
3776 3924 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3777 3925 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3778 3926 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3779 3927 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3780 3928 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3781 3929 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3801 3949 8.082242 GGGAGTATAAATGTCCAAATGTAATGC 58.918 37.037 0.00 0.00 31.31 3.56
3822 3970 5.063204 TGCTATACTTATTTTGCGATGCCT 58.937 37.500 0.00 0.00 0.00 4.75
3878 4026 2.115910 CAGTGGGAAGCCCTTGCA 59.884 61.111 3.85 0.00 45.70 4.08
4013 4161 3.691049 TTTGACTTTCGGCTCAGTTTG 57.309 42.857 0.00 0.00 0.00 2.93
4216 4366 9.438291 CTATTTCTTGCTTTCAACCATATTACG 57.562 33.333 0.00 0.00 0.00 3.18
4245 4395 2.312390 TGGTTCAGCTTTTGGTTACCC 58.688 47.619 0.00 0.00 33.53 3.69
4246 4396 2.312390 GGTTCAGCTTTTGGTTACCCA 58.688 47.619 0.00 0.00 39.65 4.51
4274 4424 8.427902 ACTTCAGCATCTACCTAATATGATCA 57.572 34.615 0.00 0.00 0.00 2.92
4314 4465 5.661503 TCCATTGGAAAGGATAATGGCTA 57.338 39.130 1.94 0.00 46.56 3.93
4343 4494 8.581057 AAGCACTCTGTGATAGAATTTATACG 57.419 34.615 1.52 0.00 35.23 3.06
4362 4513 2.884012 ACGTTCAAATGCTTCACATGGA 59.116 40.909 0.00 0.00 39.60 3.41
4393 4544 7.958053 ATGGAGCTTTTCTTTTTCATTTGAG 57.042 32.000 0.00 0.00 0.00 3.02
4457 4610 8.114331 AGAATTAATGTGACATGTGACATTGT 57.886 30.769 37.91 27.87 44.77 2.71
4725 4878 8.854614 AGAACTTATTTCTGTATGGATATGGC 57.145 34.615 0.00 0.00 43.45 4.40
4790 4958 7.011482 CGTCCAAGGTAATTTTCTGGAGATAAG 59.989 40.741 0.00 0.00 0.00 1.73
4851 5034 2.941720 TGTTGCCAAAACATTTTGCTCC 59.058 40.909 10.93 3.55 44.62 4.70
4882 5065 5.111293 CAAATTGGCCTTATGTTAGCTTGG 58.889 41.667 3.32 0.00 0.00 3.61
5181 5447 7.525688 TCAGCATCTAACTAATCGAAGTTTG 57.474 36.000 7.75 6.48 40.20 2.93
5205 5472 7.107542 TGGCTTAAAATCGGAGTACATAAAGT 58.892 34.615 0.00 0.00 0.00 2.66
5554 5822 7.658575 TGAAGTTACTTGTACCCTTACATGTTC 59.341 37.037 2.30 0.00 41.51 3.18
5557 5825 7.455638 AGTTACTTGTACCCTTACATGTTCCTA 59.544 37.037 2.30 0.00 41.51 2.94
5619 5887 1.796459 CAAGTGCCAAGCAGCAAAATC 59.204 47.619 0.00 0.00 46.19 2.17
5668 5936 5.760253 AGGTCAGTCATGTTTTGTACTCAAG 59.240 40.000 0.00 0.00 34.88 3.02
5687 5955 3.247006 AGTAGTTGATACTTGGTGCGG 57.753 47.619 0.00 0.00 42.30 5.69
5708 5976 3.735746 GGCCAAATTGTTCTGAAGTTTCG 59.264 43.478 0.00 0.00 0.00 3.46
5715 5983 2.210116 GTTCTGAAGTTTCGTCCTGCA 58.790 47.619 0.00 0.00 0.00 4.41
5719 5987 3.070018 CTGAAGTTTCGTCCTGCAATCT 58.930 45.455 0.00 0.00 0.00 2.40
5744 6012 8.816640 TGCCTTCAGAAGAAATTAATTGTTTC 57.183 30.769 12.14 8.75 36.15 2.78
5763 6032 5.598830 TGTTTCCTACTGTGGCCAATAAAAA 59.401 36.000 7.24 0.00 0.00 1.94
5775 6044 6.593382 GTGGCCAATAAAAATTGATGCACTTA 59.407 34.615 7.24 0.00 33.55 2.24
5816 6085 8.579850 ACTAATATGTGTGTTTTGATGGATGT 57.420 30.769 0.00 0.00 0.00 3.06
5904 6176 2.208326 ACTTTCAAGGCGCTGTTTTG 57.792 45.000 7.64 7.70 0.00 2.44
5905 6177 1.476488 ACTTTCAAGGCGCTGTTTTGT 59.524 42.857 7.64 0.00 0.00 2.83
6022 6295 4.015084 TCGTCTCGGAGGTATTTCTCTTT 58.985 43.478 4.96 0.00 34.39 2.52
6079 6352 0.612732 CTCCACCATGCACCCATGTT 60.613 55.000 0.00 0.00 45.90 2.71
6080 6353 0.701147 TCCACCATGCACCCATGTTA 59.299 50.000 0.00 0.00 45.90 2.41
6081 6354 1.287442 TCCACCATGCACCCATGTTAT 59.713 47.619 0.00 0.00 45.90 1.89
6082 6355 1.682854 CCACCATGCACCCATGTTATC 59.317 52.381 0.00 0.00 45.90 1.75
6083 6356 1.334556 CACCATGCACCCATGTTATCG 59.665 52.381 0.00 0.00 45.90 2.92
6170 6444 2.223971 CGGTCCATATGTATATCCGGGC 60.224 54.545 0.00 0.00 34.05 6.13
6171 6445 3.039011 GGTCCATATGTATATCCGGGCT 58.961 50.000 0.00 0.00 0.00 5.19
6182 6456 2.553438 ATCCGGGCTCTCTTCCCCTT 62.553 60.000 0.00 0.00 40.75 3.95
6277 6558 5.235850 TGTAGCCTTTTGACCTGATGTTA 57.764 39.130 0.00 0.00 0.00 2.41
6278 6559 5.815581 TGTAGCCTTTTGACCTGATGTTAT 58.184 37.500 0.00 0.00 0.00 1.89
6315 6596 9.265901 CTATGATGTTTAAAGGAGTACCATCAG 57.734 37.037 16.00 5.28 38.94 2.90
6385 6666 4.462483 TGTAGAGGGGAACAAATGAATTGC 59.538 41.667 0.00 0.00 43.13 3.56
6479 6760 9.911138 AAATGTTTTCATCTTTTTGTTTTTGCT 57.089 22.222 0.00 0.00 39.94 3.91
6487 6768 5.308825 TCTTTTTGTTTTTGCTCAACCCAA 58.691 33.333 0.00 0.00 0.00 4.12
6494 6775 2.877097 TTGCTCAACCCAATAGCAGA 57.123 45.000 0.00 0.00 46.17 4.26
6506 7173 4.082081 CCCAATAGCAGATTCTTTGTGCAA 60.082 41.667 0.00 0.00 39.80 4.08
6518 7185 6.925610 TTCTTTGTGCAATATGCTAGTAGG 57.074 37.500 3.78 0.00 45.31 3.18
6520 7187 6.830912 TCTTTGTGCAATATGCTAGTAGGAT 58.169 36.000 9.33 9.33 45.31 3.24
6522 7189 8.428852 TCTTTGTGCAATATGCTAGTAGGATTA 58.571 33.333 9.67 0.00 45.31 1.75
6523 7190 8.607441 TTTGTGCAATATGCTAGTAGGATTAG 57.393 34.615 9.67 2.01 45.31 1.73
6524 7191 7.303182 TGTGCAATATGCTAGTAGGATTAGT 57.697 36.000 9.67 0.00 45.31 2.24
6525 7192 8.417273 TGTGCAATATGCTAGTAGGATTAGTA 57.583 34.615 9.67 0.00 45.31 1.82
6526 7193 8.523658 TGTGCAATATGCTAGTAGGATTAGTAG 58.476 37.037 9.67 0.00 45.31 2.57
6527 7194 8.524487 GTGCAATATGCTAGTAGGATTAGTAGT 58.476 37.037 9.67 0.00 45.31 2.73
6528 7195 9.090103 TGCAATATGCTAGTAGGATTAGTAGTT 57.910 33.333 9.67 0.00 45.31 2.24
6529 7196 9.930693 GCAATATGCTAGTAGGATTAGTAGTTT 57.069 33.333 9.67 0.00 40.96 2.66
6535 7202 9.917887 TGCTAGTAGGATTAGTAGTTTACTCTT 57.082 33.333 0.00 0.00 40.14 2.85
6633 7300 9.935682 CACTATGTTCATTACATACAATGTTCC 57.064 33.333 0.00 0.00 45.62 3.62
6692 7359 5.278169 CCCAAGATCATGTTCCGATGATTTC 60.278 44.000 0.00 0.00 42.10 2.17
6703 7370 3.130633 CCGATGATTTCGCCAGAACATA 58.869 45.455 0.00 0.00 46.71 2.29
6744 7411 6.762187 TGACCGACTAACATGAGTAAACAAAA 59.238 34.615 0.00 0.00 0.00 2.44
6746 7413 7.636326 ACCGACTAACATGAGTAAACAAAAAG 58.364 34.615 0.00 0.00 0.00 2.27
6748 7415 7.075741 CGACTAACATGAGTAAACAAAAAGGG 58.924 38.462 0.00 0.00 0.00 3.95
6758 7425 9.240734 TGAGTAAACAAAAAGGGTACAAACTTA 57.759 29.630 0.00 0.00 0.00 2.24
6765 7432 2.917205 AGGGTACAAACTTAGGAGCCT 58.083 47.619 0.00 0.00 33.22 4.58
6774 7441 7.312415 ACAAACTTAGGAGCCTTACTCTTAA 57.688 36.000 0.00 0.00 42.78 1.85
6779 7446 9.663365 AACTTAGGAGCCTTACTCTTAATATCT 57.337 33.333 0.00 0.00 43.65 1.98
6813 7486 2.046892 ACCTGTCCATCGCAGCAC 60.047 61.111 0.00 0.00 32.93 4.40
6834 7507 3.701040 ACTTGTCACTTTGCTGACCAAAT 59.299 39.130 1.77 0.00 42.22 2.32
6900 7573 5.299028 TCTTCAGCAAATTCTAGTGCACAAA 59.701 36.000 21.04 10.61 43.42 2.83
6901 7574 5.112220 TCAGCAAATTCTAGTGCACAAAG 57.888 39.130 21.04 15.79 43.42 2.77
6902 7575 3.671928 CAGCAAATTCTAGTGCACAAAGC 59.328 43.478 21.04 10.76 43.42 3.51
6916 7589 2.093869 CACAAAGCATAGCAATGGCCTT 60.094 45.455 3.32 0.00 42.56 4.35
6917 7590 2.568509 ACAAAGCATAGCAATGGCCTTT 59.431 40.909 3.32 0.00 42.56 3.11
6977 7650 0.902531 TGGTTGCTAGCACTAGTCCC 59.097 55.000 19.17 10.86 35.65 4.46
6980 7653 1.825474 GTTGCTAGCACTAGTCCCAGA 59.175 52.381 19.17 0.00 35.65 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.520492 GTCCATCATAATTGGCTAGGGTTG 59.480 45.833 0.00 0.00 34.06 3.77
15 16 3.074390 TGGTCCATCATAATTGGCTAGGG 59.926 47.826 0.00 0.00 34.06 3.53
102 103 4.137543 GTTGAAGATGACTTTGGTGTCCT 58.862 43.478 0.00 0.00 36.39 3.85
115 116 7.351414 TCACGTTAGATTCTTGTTGAAGATG 57.649 36.000 0.00 0.00 38.05 2.90
149 206 6.210584 ACACGGTCCAGATATTTTCCAAAAAT 59.789 34.615 3.43 3.43 0.00 1.82
155 212 4.142469 CCAAACACGGTCCAGATATTTTCC 60.142 45.833 0.00 0.00 0.00 3.13
164 221 0.462937 TCACACCAAACACGGTCCAG 60.463 55.000 0.00 0.00 37.07 3.86
254 311 7.485913 CCAAATTATGATGTTGTGCTGAACTAC 59.514 37.037 0.00 0.00 35.38 2.73
347 440 8.876181 GGGGCAATAATGGGTAGTATAATTTTT 58.124 33.333 0.00 0.00 0.00 1.94
375 468 4.077822 ACATCTTGCCTCTTCTTTCCTTG 58.922 43.478 0.00 0.00 0.00 3.61
377 470 4.379302 AACATCTTGCCTCTTCTTTCCT 57.621 40.909 0.00 0.00 0.00 3.36
379 472 7.277981 TCGTATTAACATCTTGCCTCTTCTTTC 59.722 37.037 0.00 0.00 0.00 2.62
382 475 6.222038 TCGTATTAACATCTTGCCTCTTCT 57.778 37.500 0.00 0.00 0.00 2.85
383 476 5.463724 CCTCGTATTAACATCTTGCCTCTTC 59.536 44.000 0.00 0.00 0.00 2.87
384 477 5.360591 CCTCGTATTAACATCTTGCCTCTT 58.639 41.667 0.00 0.00 0.00 2.85
570 668 2.194326 GAGGGGGCAATGAGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
573 671 2.697644 AGGGAGGGGGCAATGAGG 60.698 66.667 0.00 0.00 0.00 3.86
575 673 3.089874 CGAGGGAGGGGGCAATGA 61.090 66.667 0.00 0.00 0.00 2.57
577 675 3.090532 GACGAGGGAGGGGGCAAT 61.091 66.667 0.00 0.00 0.00 3.56
581 679 4.862823 GGAGGACGAGGGAGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
953 1051 1.073177 AAAACCCTGCGTACGATTCG 58.927 50.000 21.65 4.14 0.00 3.34
1196 1294 1.000843 CCGACCAGACACACTCATCAA 59.999 52.381 0.00 0.00 0.00 2.57
1198 1296 0.603569 ACCGACCAGACACACTCATC 59.396 55.000 0.00 0.00 0.00 2.92
1201 1299 0.241481 GAGACCGACCAGACACACTC 59.759 60.000 0.00 0.00 0.00 3.51
1263 1361 1.426816 CCTATCGCAGCACAGCACTG 61.427 60.000 0.00 0.00 38.22 3.66
1280 1378 2.765807 CGCCTCCTCCACCATCCT 60.766 66.667 0.00 0.00 0.00 3.24
1343 1441 5.533482 ACACTTTCTCTAAGCACTAGTGTG 58.467 41.667 23.44 11.61 42.05 3.82
1345 1443 4.926238 CCACACTTTCTCTAAGCACTAGTG 59.074 45.833 18.93 18.93 37.37 2.74
1350 1448 3.996480 ACTCCACACTTTCTCTAAGCAC 58.004 45.455 0.00 0.00 37.37 4.40
1407 1509 3.149196 CAACATTGGGCACTGTCTAGTT 58.851 45.455 0.00 0.00 34.07 2.24
1474 1576 4.363138 TGATGCGTGCATTTAAACAAACA 58.637 34.783 8.98 0.00 36.70 2.83
1477 1579 2.985809 GCTGATGCGTGCATTTAAACAA 59.014 40.909 8.98 0.00 36.70 2.83
1554 1656 8.409358 AAACTCCATACTGAAAAACTAGCATT 57.591 30.769 0.00 0.00 0.00 3.56
1682 1785 2.012673 GCATCCAAGTAAGCACTCCAG 58.987 52.381 0.00 0.00 32.29 3.86
1727 1830 2.669434 TGGCGCGTATTTCTAGACAAAC 59.331 45.455 8.43 0.00 0.00 2.93
1798 1916 9.833917 ACTCCTAGAATTAATTTACTGTTAGGC 57.166 33.333 1.43 0.00 0.00 3.93
1845 1966 6.015519 TGCTCAGTTGGCTACACAATTTATTT 60.016 34.615 1.24 0.00 32.24 1.40
1935 2056 7.039882 CGGCTACAGAAAAAGAGGTAGAAATA 58.960 38.462 0.00 0.00 36.24 1.40
1947 2068 8.205512 TGTATACCAATATCGGCTACAGAAAAA 58.794 33.333 0.00 0.00 0.00 1.94
1987 2108 4.081697 ACTGGGCTAAATTTGAATTTCCCG 60.082 41.667 15.61 13.44 41.72 5.14
2189 2310 4.772886 ACAAACAGAACACCTAACCTCT 57.227 40.909 0.00 0.00 0.00 3.69
2321 2442 6.753107 AAACCAAACATAATAAGGGAGTCG 57.247 37.500 0.00 0.00 0.00 4.18
2333 2454 5.184864 CCTGCATGAGGTAAAACCAAACATA 59.815 40.000 0.00 0.00 41.95 2.29
2437 2558 1.204467 TGAAATCGGGCAAGGAATTGC 59.796 47.619 4.40 4.40 46.64 3.56
2476 2597 7.933396 TCAAACAAGATAACATGCATATCCAG 58.067 34.615 0.00 9.61 31.45 3.86
2489 2610 7.556275 ACCACAAGTTCTCTTCAAACAAGATAA 59.444 33.333 0.00 0.00 0.00 1.75
2634 2755 6.647895 ACTGAATTTCTGCTATTTTTGCCTTG 59.352 34.615 3.45 0.00 0.00 3.61
2853 2974 1.173043 TGTTGGGCTCCGCTATTTTG 58.827 50.000 0.00 0.00 0.00 2.44
3020 3141 1.616865 CGACTACCAAGACCCAGACAA 59.383 52.381 0.00 0.00 0.00 3.18
3027 3148 2.000447 GATTGTGCGACTACCAAGACC 59.000 52.381 0.00 0.00 0.00 3.85
3039 3160 1.197721 GACCAACCTTGAGATTGTGCG 59.802 52.381 0.00 0.00 0.00 5.34
3080 3223 2.234414 GTGTGCCCATCCAAATGAACAT 59.766 45.455 0.00 0.00 34.61 2.71
3081 3224 1.617850 GTGTGCCCATCCAAATGAACA 59.382 47.619 0.00 0.00 34.61 3.18
3082 3225 1.617850 TGTGTGCCCATCCAAATGAAC 59.382 47.619 0.00 0.00 34.61 3.18
3083 3226 2.006805 TGTGTGCCCATCCAAATGAA 57.993 45.000 0.00 0.00 34.61 2.57
3084 3227 2.234896 ATGTGTGCCCATCCAAATGA 57.765 45.000 0.00 0.00 34.61 2.57
3085 3228 2.498481 AGAATGTGTGCCCATCCAAATG 59.502 45.455 0.00 0.00 0.00 2.32
3086 3229 2.823959 AGAATGTGTGCCCATCCAAAT 58.176 42.857 0.00 0.00 0.00 2.32
3087 3230 2.307496 AGAATGTGTGCCCATCCAAA 57.693 45.000 0.00 0.00 0.00 3.28
3088 3231 2.307496 AAGAATGTGTGCCCATCCAA 57.693 45.000 0.00 0.00 0.00 3.53
3089 3232 2.170166 GAAAGAATGTGTGCCCATCCA 58.830 47.619 0.00 0.00 0.00 3.41
3090 3233 1.133025 CGAAAGAATGTGTGCCCATCC 59.867 52.381 0.00 0.00 0.00 3.51
3091 3234 1.812571 ACGAAAGAATGTGTGCCCATC 59.187 47.619 0.00 0.00 0.00 3.51
3092 3235 1.909700 ACGAAAGAATGTGTGCCCAT 58.090 45.000 0.00 0.00 0.00 4.00
3093 3236 1.606668 GAACGAAAGAATGTGTGCCCA 59.393 47.619 0.00 0.00 0.00 5.36
3094 3237 1.606668 TGAACGAAAGAATGTGTGCCC 59.393 47.619 0.00 0.00 0.00 5.36
3095 3238 3.058293 TCATGAACGAAAGAATGTGTGCC 60.058 43.478 0.00 0.00 0.00 5.01
3096 3239 4.145876 TCATGAACGAAAGAATGTGTGC 57.854 40.909 0.00 0.00 0.00 4.57
3097 3240 8.017373 AGTAAATCATGAACGAAAGAATGTGTG 58.983 33.333 0.00 0.00 0.00 3.82
3098 3241 8.099364 AGTAAATCATGAACGAAAGAATGTGT 57.901 30.769 0.00 0.00 0.00 3.72
3099 3242 8.955061 AAGTAAATCATGAACGAAAGAATGTG 57.045 30.769 0.00 0.00 0.00 3.21
3223 3366 1.134280 GTGTACTCCAGATGCAGCCAT 60.134 52.381 0.00 0.00 0.00 4.40
3377 3520 8.758829 ACTAACATGTCCAAGTTCAGATACATA 58.241 33.333 0.00 0.00 0.00 2.29
3418 3561 4.141287 ACTAGACGCTATCTCTCATGCTT 58.859 43.478 0.00 0.00 39.04 3.91
3419 3562 3.750371 ACTAGACGCTATCTCTCATGCT 58.250 45.455 0.00 0.00 39.04 3.79
3420 3563 3.119990 GGACTAGACGCTATCTCTCATGC 60.120 52.174 0.00 0.00 39.04 4.06
3421 3564 3.124466 CGGACTAGACGCTATCTCTCATG 59.876 52.174 0.00 0.00 39.04 3.07
3422 3565 3.331150 CGGACTAGACGCTATCTCTCAT 58.669 50.000 0.00 0.00 39.04 2.90
3423 3566 2.756829 CGGACTAGACGCTATCTCTCA 58.243 52.381 0.00 0.00 39.04 3.27
3433 3576 4.554363 CAGCCCGCGGACTAGACG 62.554 72.222 30.73 9.14 0.00 4.18
3434 3577 4.874977 GCAGCCCGCGGACTAGAC 62.875 72.222 30.73 9.87 0.00 2.59
3447 3590 1.821332 ATCTAAGCGGGCAAGCAGC 60.821 57.895 6.94 4.01 44.65 5.25
3448 3591 0.745845 ACATCTAAGCGGGCAAGCAG 60.746 55.000 6.94 0.00 40.15 4.24
3449 3592 0.744414 GACATCTAAGCGGGCAAGCA 60.744 55.000 6.94 0.00 40.15 3.91
3450 3593 1.766143 CGACATCTAAGCGGGCAAGC 61.766 60.000 0.00 0.00 37.41 4.01
3451 3594 0.179111 TCGACATCTAAGCGGGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
3452 3595 0.464036 ATCGACATCTAAGCGGGCAA 59.536 50.000 0.00 0.00 0.00 4.52
3453 3596 0.249447 CATCGACATCTAAGCGGGCA 60.249 55.000 0.00 0.00 0.00 5.36
3454 3597 0.249489 ACATCGACATCTAAGCGGGC 60.249 55.000 0.00 0.00 0.00 6.13
3455 3598 2.607282 GGTACATCGACATCTAAGCGGG 60.607 54.545 0.00 0.00 0.00 6.13
3456 3599 2.293677 AGGTACATCGACATCTAAGCGG 59.706 50.000 0.00 0.00 0.00 5.52
3457 3600 3.251245 AGAGGTACATCGACATCTAAGCG 59.749 47.826 1.22 0.00 38.64 4.68
3458 3601 4.839668 AGAGGTACATCGACATCTAAGC 57.160 45.455 1.22 0.00 38.64 3.09
3459 3602 7.033530 AGAAAGAGGTACATCGACATCTAAG 57.966 40.000 1.22 0.00 39.46 2.18
3460 3603 7.406031 AAGAAAGAGGTACATCGACATCTAA 57.594 36.000 1.22 0.00 39.46 2.10
3461 3604 7.406031 AAAGAAAGAGGTACATCGACATCTA 57.594 36.000 1.22 0.00 39.46 1.98
3462 3605 5.923733 AAGAAAGAGGTACATCGACATCT 57.076 39.130 1.22 2.26 42.04 2.90
3463 3606 6.590292 TGAAAAGAAAGAGGTACATCGACATC 59.410 38.462 1.22 0.00 0.00 3.06
3464 3607 6.464222 TGAAAAGAAAGAGGTACATCGACAT 58.536 36.000 1.22 0.00 0.00 3.06
3465 3608 5.849510 TGAAAAGAAAGAGGTACATCGACA 58.150 37.500 1.22 0.00 0.00 4.35
3466 3609 5.163943 GCTGAAAAGAAAGAGGTACATCGAC 60.164 44.000 1.22 0.00 0.00 4.20
3467 3610 4.929808 GCTGAAAAGAAAGAGGTACATCGA 59.070 41.667 1.22 0.00 0.00 3.59
3468 3611 4.093556 GGCTGAAAAGAAAGAGGTACATCG 59.906 45.833 1.22 0.00 0.00 3.84
3469 3612 4.396478 GGGCTGAAAAGAAAGAGGTACATC 59.604 45.833 0.00 0.00 0.00 3.06
3470 3613 4.043435 AGGGCTGAAAAGAAAGAGGTACAT 59.957 41.667 0.00 0.00 0.00 2.29
3471 3614 3.394606 AGGGCTGAAAAGAAAGAGGTACA 59.605 43.478 0.00 0.00 0.00 2.90
3472 3615 4.022413 AGGGCTGAAAAGAAAGAGGTAC 57.978 45.455 0.00 0.00 0.00 3.34
3473 3616 4.724279 AAGGGCTGAAAAGAAAGAGGTA 57.276 40.909 0.00 0.00 0.00 3.08
3474 3617 3.602205 AAGGGCTGAAAAGAAAGAGGT 57.398 42.857 0.00 0.00 0.00 3.85
3475 3618 4.342092 TCAAAAGGGCTGAAAAGAAAGAGG 59.658 41.667 0.00 0.00 0.00 3.69
3476 3619 5.520376 TCAAAAGGGCTGAAAAGAAAGAG 57.480 39.130 0.00 0.00 0.00 2.85
3477 3620 5.278463 CGATCAAAAGGGCTGAAAAGAAAGA 60.278 40.000 0.00 0.00 0.00 2.52
3478 3621 4.919754 CGATCAAAAGGGCTGAAAAGAAAG 59.080 41.667 0.00 0.00 0.00 2.62
3479 3622 4.795962 GCGATCAAAAGGGCTGAAAAGAAA 60.796 41.667 0.00 0.00 0.00 2.52
3480 3623 3.305335 GCGATCAAAAGGGCTGAAAAGAA 60.305 43.478 0.00 0.00 0.00 2.52
3481 3624 2.228822 GCGATCAAAAGGGCTGAAAAGA 59.771 45.455 0.00 0.00 0.00 2.52
3482 3625 2.229784 AGCGATCAAAAGGGCTGAAAAG 59.770 45.455 0.00 0.00 33.81 2.27
3483 3626 2.238521 AGCGATCAAAAGGGCTGAAAA 58.761 42.857 0.00 0.00 33.81 2.29
3484 3627 1.909700 AGCGATCAAAAGGGCTGAAA 58.090 45.000 0.00 0.00 33.81 2.69
3485 3628 1.541147 CAAGCGATCAAAAGGGCTGAA 59.459 47.619 0.00 0.00 35.59 3.02
3486 3629 1.167851 CAAGCGATCAAAAGGGCTGA 58.832 50.000 0.00 0.00 35.59 4.26
3487 3630 1.167851 TCAAGCGATCAAAAGGGCTG 58.832 50.000 0.00 0.00 35.59 4.85
3488 3631 2.019984 GATCAAGCGATCAAAAGGGCT 58.980 47.619 0.00 0.00 46.33 5.19
3489 3632 2.481903 GATCAAGCGATCAAAAGGGC 57.518 50.000 0.00 0.00 46.33 5.19
3498 3641 0.615331 ACAGTGGGTGATCAAGCGAT 59.385 50.000 0.00 0.00 33.31 4.58
3499 3642 0.396435 AACAGTGGGTGATCAAGCGA 59.604 50.000 0.00 0.00 0.00 4.93
3500 3643 1.069022 CAAACAGTGGGTGATCAAGCG 60.069 52.381 0.00 0.00 0.00 4.68
3501 3644 1.336240 GCAAACAGTGGGTGATCAAGC 60.336 52.381 0.00 0.00 0.00 4.01
3502 3645 1.270550 GGCAAACAGTGGGTGATCAAG 59.729 52.381 0.00 0.00 0.00 3.02
3503 3646 1.327303 GGCAAACAGTGGGTGATCAA 58.673 50.000 0.00 0.00 0.00 2.57
3504 3647 0.539438 GGGCAAACAGTGGGTGATCA 60.539 55.000 0.00 0.00 0.00 2.92
3505 3648 1.586154 CGGGCAAACAGTGGGTGATC 61.586 60.000 0.00 0.00 0.00 2.92
3506 3649 1.603455 CGGGCAAACAGTGGGTGAT 60.603 57.895 0.00 0.00 0.00 3.06
3507 3650 2.203280 CGGGCAAACAGTGGGTGA 60.203 61.111 0.00 0.00 0.00 4.02
3508 3651 3.977244 GCGGGCAAACAGTGGGTG 61.977 66.667 0.00 0.00 0.00 4.61
3509 3652 4.204028 AGCGGGCAAACAGTGGGT 62.204 61.111 0.00 0.00 0.00 4.51
3510 3653 3.365265 GAGCGGGCAAACAGTGGG 61.365 66.667 0.00 0.00 0.00 4.61
3511 3654 2.281761 AGAGCGGGCAAACAGTGG 60.282 61.111 0.00 0.00 0.00 4.00
3512 3655 1.294659 GAGAGAGCGGGCAAACAGTG 61.295 60.000 0.00 0.00 0.00 3.66
3513 3656 1.004440 GAGAGAGCGGGCAAACAGT 60.004 57.895 0.00 0.00 0.00 3.55
3514 3657 1.743252 GGAGAGAGCGGGCAAACAG 60.743 63.158 0.00 0.00 0.00 3.16
3515 3658 2.217038 AGGAGAGAGCGGGCAAACA 61.217 57.895 0.00 0.00 0.00 2.83
3516 3659 1.743252 CAGGAGAGAGCGGGCAAAC 60.743 63.158 0.00 0.00 0.00 2.93
3517 3660 2.665000 CAGGAGAGAGCGGGCAAA 59.335 61.111 0.00 0.00 0.00 3.68
3518 3661 4.087892 GCAGGAGAGAGCGGGCAA 62.088 66.667 0.00 0.00 0.00 4.52
3520 3663 1.961180 TTAAGCAGGAGAGAGCGGGC 61.961 60.000 0.00 0.00 35.48 6.13
3521 3664 0.755686 ATTAAGCAGGAGAGAGCGGG 59.244 55.000 0.00 0.00 35.48 6.13
3522 3665 1.410517 TCATTAAGCAGGAGAGAGCGG 59.589 52.381 0.00 0.00 35.48 5.52
3523 3666 2.879002 TCATTAAGCAGGAGAGAGCG 57.121 50.000 0.00 0.00 35.48 5.03
3524 3667 5.121811 TCATTTCATTAAGCAGGAGAGAGC 58.878 41.667 0.00 0.00 0.00 4.09
3525 3668 6.238429 GCTTCATTTCATTAAGCAGGAGAGAG 60.238 42.308 0.00 0.00 43.98 3.20
3526 3669 5.587844 GCTTCATTTCATTAAGCAGGAGAGA 59.412 40.000 0.00 0.00 43.98 3.10
3527 3670 5.221009 GGCTTCATTTCATTAAGCAGGAGAG 60.221 44.000 8.38 0.00 45.86 3.20
3528 3671 4.641989 GGCTTCATTTCATTAAGCAGGAGA 59.358 41.667 8.38 0.00 45.86 3.71
3529 3672 4.400251 TGGCTTCATTTCATTAAGCAGGAG 59.600 41.667 8.38 0.00 45.86 3.69
3530 3673 4.343231 TGGCTTCATTTCATTAAGCAGGA 58.657 39.130 8.38 0.00 45.86 3.86
3531 3674 4.400251 TCTGGCTTCATTTCATTAAGCAGG 59.600 41.667 8.38 1.27 45.86 4.85
3532 3675 5.571784 TCTGGCTTCATTTCATTAAGCAG 57.428 39.130 8.38 4.63 45.86 4.24
3533 3676 5.981088 TTCTGGCTTCATTTCATTAAGCA 57.019 34.783 8.38 0.00 45.86 3.91
3534 3677 6.257193 CCATTTCTGGCTTCATTTCATTAAGC 59.743 38.462 0.00 0.00 43.85 3.09
3535 3678 7.766219 CCATTTCTGGCTTCATTTCATTAAG 57.234 36.000 0.00 0.00 35.23 1.85
3550 3693 3.749665 TTTTGAAGTGGCCATTTCTGG 57.250 42.857 33.11 0.00 46.17 3.86
3551 3694 7.727331 TTTTATTTTGAAGTGGCCATTTCTG 57.273 32.000 33.11 0.00 0.00 3.02
3554 3697 8.729756 GCTTATTTTATTTTGAAGTGGCCATTT 58.270 29.630 14.15 14.15 0.00 2.32
3555 3698 7.882271 TGCTTATTTTATTTTGAAGTGGCCATT 59.118 29.630 9.72 0.00 0.00 3.16
3556 3699 7.393216 TGCTTATTTTATTTTGAAGTGGCCAT 58.607 30.769 9.72 0.00 0.00 4.40
3557 3700 6.763355 TGCTTATTTTATTTTGAAGTGGCCA 58.237 32.000 0.00 0.00 0.00 5.36
3558 3701 7.548780 TCATGCTTATTTTATTTTGAAGTGGCC 59.451 33.333 0.00 0.00 0.00 5.36
3559 3702 8.477984 TCATGCTTATTTTATTTTGAAGTGGC 57.522 30.769 0.00 0.00 0.00 5.01
3560 3703 9.643693 ACTCATGCTTATTTTATTTTGAAGTGG 57.356 29.630 0.00 0.00 0.00 4.00
3562 3705 9.643693 CCACTCATGCTTATTTTATTTTGAAGT 57.356 29.630 0.00 0.00 0.00 3.01
3563 3706 9.643693 ACCACTCATGCTTATTTTATTTTGAAG 57.356 29.630 0.00 0.00 0.00 3.02
3564 3707 9.638239 GACCACTCATGCTTATTTTATTTTGAA 57.362 29.630 0.00 0.00 0.00 2.69
3565 3708 9.023962 AGACCACTCATGCTTATTTTATTTTGA 57.976 29.630 0.00 0.00 0.00 2.69
3566 3709 9.079833 CAGACCACTCATGCTTATTTTATTTTG 57.920 33.333 0.00 0.00 0.00 2.44
3567 3710 8.253113 CCAGACCACTCATGCTTATTTTATTTT 58.747 33.333 0.00 0.00 0.00 1.82
3568 3711 7.147846 CCCAGACCACTCATGCTTATTTTATTT 60.148 37.037 0.00 0.00 0.00 1.40
3569 3712 6.322201 CCCAGACCACTCATGCTTATTTTATT 59.678 38.462 0.00 0.00 0.00 1.40
3570 3713 5.829924 CCCAGACCACTCATGCTTATTTTAT 59.170 40.000 0.00 0.00 0.00 1.40
3571 3714 5.192927 CCCAGACCACTCATGCTTATTTTA 58.807 41.667 0.00 0.00 0.00 1.52
3572 3715 4.019174 CCCAGACCACTCATGCTTATTTT 58.981 43.478 0.00 0.00 0.00 1.82
3573 3716 3.010584 ACCCAGACCACTCATGCTTATTT 59.989 43.478 0.00 0.00 0.00 1.40
3574 3717 2.578021 ACCCAGACCACTCATGCTTATT 59.422 45.455 0.00 0.00 0.00 1.40
3575 3718 2.092753 CACCCAGACCACTCATGCTTAT 60.093 50.000 0.00 0.00 0.00 1.73
3576 3719 1.278985 CACCCAGACCACTCATGCTTA 59.721 52.381 0.00 0.00 0.00 3.09
3645 3793 6.938030 CCGGACAGAGGGAGTATATAGATATC 59.062 46.154 0.00 0.00 0.00 1.63
3657 3805 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
3658 3806 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3659 3807 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3660 3808 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
3661 3809 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
3662 3810 4.819105 ATGACAAGTATTTCCGGACAGA 57.181 40.909 1.83 0.00 0.00 3.41
3663 3811 6.978343 TTAATGACAAGTATTTCCGGACAG 57.022 37.500 1.83 0.00 0.00 3.51
3664 3812 7.747155 TTTTAATGACAAGTATTTCCGGACA 57.253 32.000 1.83 0.00 0.00 4.02
3665 3813 8.455682 TCATTTTAATGACAAGTATTTCCGGAC 58.544 33.333 1.83 0.00 40.32 4.79
3666 3814 8.568676 TCATTTTAATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 40.32 5.14
3667 3815 9.801873 ATTCATTTTAATGACAAGTATTTCCGG 57.198 29.630 4.70 0.00 44.54 5.14
3675 3823 9.942850 CCCCTTTTATTCATTTTAATGACAAGT 57.057 29.630 4.70 0.00 44.54 3.16
3689 3837 8.103305 GCATCTAGATACATCCCCTTTTATTCA 58.897 37.037 4.54 0.00 0.00 2.57
3690 3838 8.103305 TGCATCTAGATACATCCCCTTTTATTC 58.897 37.037 4.54 0.00 0.00 1.75
3691 3839 7.988937 TGCATCTAGATACATCCCCTTTTATT 58.011 34.615 4.54 0.00 0.00 1.40
3692 3840 7.574021 TGCATCTAGATACATCCCCTTTTAT 57.426 36.000 4.54 0.00 0.00 1.40
3693 3841 7.574021 ATGCATCTAGATACATCCCCTTTTA 57.426 36.000 12.00 0.00 0.00 1.52
3694 3842 5.912149 TGCATCTAGATACATCCCCTTTT 57.088 39.130 4.54 0.00 0.00 2.27
3695 3843 6.460103 AATGCATCTAGATACATCCCCTTT 57.540 37.500 17.09 0.96 0.00 3.11
3696 3844 6.460103 AAATGCATCTAGATACATCCCCTT 57.540 37.500 17.09 6.79 0.00 3.95
3697 3845 6.460103 AAAATGCATCTAGATACATCCCCT 57.540 37.500 17.09 1.19 0.00 4.79
3698 3846 8.814038 ATTAAAATGCATCTAGATACATCCCC 57.186 34.615 17.09 0.00 0.00 4.81
3727 3875 9.753674 TCAAAATAGACAAAAAGGGATGTATCT 57.246 29.630 0.00 0.00 0.00 1.98
3730 3878 9.527157 TCATCAAAATAGACAAAAAGGGATGTA 57.473 29.630 0.00 0.00 32.47 2.29
3731 3879 8.306761 GTCATCAAAATAGACAAAAAGGGATGT 58.693 33.333 0.00 0.00 32.47 3.06
3732 3880 8.306038 TGTCATCAAAATAGACAAAAAGGGATG 58.694 33.333 0.00 0.00 39.15 3.51
3733 3881 8.421249 TGTCATCAAAATAGACAAAAAGGGAT 57.579 30.769 0.00 0.00 39.15 3.85
3734 3882 7.831691 TGTCATCAAAATAGACAAAAAGGGA 57.168 32.000 0.00 0.00 39.15 4.20
3742 3890 8.664798 CGGAAATACTTGTCATCAAAATAGACA 58.335 33.333 0.00 0.00 40.24 3.41
3743 3891 8.122952 CCGGAAATACTTGTCATCAAAATAGAC 58.877 37.037 0.00 0.00 32.87 2.59
3744 3892 8.044309 TCCGGAAATACTTGTCATCAAAATAGA 58.956 33.333 0.00 0.00 32.87 1.98
3745 3893 8.122952 GTCCGGAAATACTTGTCATCAAAATAG 58.877 37.037 5.23 0.00 32.87 1.73
3746 3894 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
3747 3895 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
3748 3896 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
3749 3897 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
3750 3898 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3751 3899 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3752 3900 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3753 3901 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3754 3902 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3755 3903 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3756 3904 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3757 3905 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3758 3906 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3759 3907 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3760 3908 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3761 3909 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3762 3910 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3763 3911 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3764 3912 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3765 3913 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
3766 3914 1.696063 TTTATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
3767 3915 2.626743 ACATTTATACTCCCTCCGTCCG 59.373 50.000 0.00 0.00 0.00 4.79
3768 3916 3.006644 GGACATTTATACTCCCTCCGTCC 59.993 52.174 0.00 0.00 34.19 4.79
3769 3917 3.640029 TGGACATTTATACTCCCTCCGTC 59.360 47.826 0.00 0.00 0.00 4.79
3770 3918 3.649843 TGGACATTTATACTCCCTCCGT 58.350 45.455 0.00 0.00 0.00 4.69
3771 3919 4.682778 TTGGACATTTATACTCCCTCCG 57.317 45.455 0.00 0.00 0.00 4.63
3772 3920 6.365520 ACATTTGGACATTTATACTCCCTCC 58.634 40.000 0.00 0.00 0.00 4.30
3773 3921 8.974060 TTACATTTGGACATTTATACTCCCTC 57.026 34.615 0.00 0.00 0.00 4.30
3774 3922 9.354673 CATTACATTTGGACATTTATACTCCCT 57.645 33.333 0.00 0.00 0.00 4.20
3775 3923 8.082242 GCATTACATTTGGACATTTATACTCCC 58.918 37.037 0.00 0.00 0.00 4.30
3776 3924 8.850156 AGCATTACATTTGGACATTTATACTCC 58.150 33.333 0.00 0.00 0.00 3.85
3801 3949 7.189693 TCAAGGCATCGCAAAATAAGTATAG 57.810 36.000 0.00 0.00 0.00 1.31
3822 3970 7.448161 AGGATGATGTCAATTACACAAGTTCAA 59.552 33.333 0.00 0.00 42.09 2.69
3918 4066 1.419762 TGCAGTAGAACCTTCAGGCAA 59.580 47.619 0.00 0.00 39.32 4.52
4035 4185 4.147321 ACTCAGGCACAGATTGTTTGAAT 58.853 39.130 0.00 0.00 0.00 2.57
4046 4196 0.674895 GGCAGGTTACTCAGGCACAG 60.675 60.000 0.00 0.00 0.00 3.66
4216 4366 7.100458 ACCAAAAGCTGAACCATAATATCAC 57.900 36.000 0.00 0.00 0.00 3.06
4245 4395 7.928167 TCATATTAGGTAGATGCTGAAGTTGTG 59.072 37.037 0.00 0.00 0.00 3.33
4246 4396 8.023021 TCATATTAGGTAGATGCTGAAGTTGT 57.977 34.615 0.00 0.00 0.00 3.32
4274 4424 9.362151 TCCAATGGAAAATTACTACAAGTTCTT 57.638 29.630 0.00 0.00 0.00 2.52
4296 4446 6.490040 GCTTACATAGCCATTATCCTTTCCAA 59.510 38.462 0.00 0.00 44.48 3.53
4343 4494 4.022935 TGTCTCCATGTGAAGCATTTGAAC 60.023 41.667 0.00 0.00 35.19 3.18
4362 4513 8.181904 TGAAAAAGAAAAGCTCCATATTGTCT 57.818 30.769 0.00 0.00 0.00 3.41
4457 4610 7.503521 TCTGATTGTGCACAAAATTAGTACA 57.496 32.000 34.06 20.28 39.55 2.90
4670 4823 9.950496 AAGATAACAAACATGATGAGAAGTAGT 57.050 29.630 0.00 0.00 0.00 2.73
4725 4878 5.600696 AGCCCAAGGAAATTAAATATTGCG 58.399 37.500 0.00 0.00 0.00 4.85
4790 4958 4.632538 AAGGACACAAAAGTTACACTGC 57.367 40.909 0.00 0.00 0.00 4.40
4851 5034 4.338118 ACATAAGGCCAATTTGTATCCACG 59.662 41.667 5.01 0.00 0.00 4.94
5118 5384 1.532523 TGGTGTGTACATGCCATGTG 58.467 50.000 20.36 0.00 44.60 3.21
5181 5447 7.549615 ACTTTATGTACTCCGATTTTAAGCC 57.450 36.000 0.00 0.00 0.00 4.35
5205 5472 9.098355 GAATAATTAGTGCTCATGTTCAGTGTA 57.902 33.333 0.00 0.00 0.00 2.90
5278 5546 2.671396 AGTAACCAAATCGCACATCGTC 59.329 45.455 0.00 0.00 39.67 4.20
5280 5548 2.415168 ACAGTAACCAAATCGCACATCG 59.585 45.455 0.00 0.00 40.15 3.84
5288 5556 9.124807 GCAAAACTAACATACAGTAACCAAATC 57.875 33.333 0.00 0.00 0.00 2.17
5500 5768 4.803452 TGAATCAACAAAGAAGGGAAGGT 58.197 39.130 0.00 0.00 0.00 3.50
5539 5807 5.104235 ACCCATTAGGAACATGTAAGGGTAC 60.104 44.000 9.30 0.00 44.73 3.34
5554 5822 3.157087 ACTGCAACAAAGACCCATTAGG 58.843 45.455 0.00 0.00 43.78 2.69
5557 5825 4.666512 AGATACTGCAACAAAGACCCATT 58.333 39.130 0.00 0.00 0.00 3.16
5619 5887 1.680207 TCCTCAGCATCAGACATCTCG 59.320 52.381 0.00 0.00 0.00 4.04
5668 5936 1.664151 GCCGCACCAAGTATCAACTAC 59.336 52.381 0.00 0.00 33.75 2.73
5686 5954 3.735746 CGAAACTTCAGAACAATTTGGCC 59.264 43.478 0.00 0.00 0.00 5.36
5687 5955 4.359706 ACGAAACTTCAGAACAATTTGGC 58.640 39.130 0.78 0.00 0.00 4.52
5696 5964 2.613026 TGCAGGACGAAACTTCAGAA 57.387 45.000 0.00 0.00 0.00 3.02
5719 5987 7.872483 GGAAACAATTAATTTCTTCTGAAGGCA 59.128 33.333 16.83 4.92 36.49 4.75
5744 6012 6.279513 TCAATTTTTATTGGCCACAGTAGG 57.720 37.500 3.88 0.00 32.65 3.18
5752 6020 7.608308 TTAAGTGCATCAATTTTTATTGGCC 57.392 32.000 0.00 0.00 32.65 5.36
5816 6085 3.713003 TCCTCTAATCTGCTGGACAAGA 58.287 45.455 0.00 0.00 0.00 3.02
5904 6176 5.008613 TGGCTGTCAGACTTACAAATTTGAC 59.991 40.000 24.64 10.11 36.40 3.18
5905 6177 5.129634 TGGCTGTCAGACTTACAAATTTGA 58.870 37.500 24.64 5.76 0.00 2.69
6029 6302 4.530946 GCCCTATGCTAGTACTATTTGGGA 59.469 45.833 21.01 7.22 36.87 4.37
6168 6442 0.251634 CTGTCAAGGGGAAGAGAGCC 59.748 60.000 0.00 0.00 0.00 4.70
6182 6456 2.428530 CGACATTCTCATCTCCCTGTCA 59.571 50.000 0.00 0.00 34.17 3.58
6226 6507 6.754702 ATATAAATCATCACATGCTCTGCC 57.245 37.500 0.00 0.00 0.00 4.85
6277 6558 3.572632 ACATCATAGTGCAGCCTCAAT 57.427 42.857 0.00 0.00 0.00 2.57
6278 6559 3.354948 AACATCATAGTGCAGCCTCAA 57.645 42.857 0.00 0.00 0.00 3.02
6315 6596 0.755686 ACCGAATGGGCATCTCTCTC 59.244 55.000 0.00 0.00 40.62 3.20
6385 6666 2.285083 TCAGTTTCACGACAACAAGGG 58.715 47.619 0.00 0.00 0.00 3.95
6479 6760 5.183713 CACAAAGAATCTGCTATTGGGTTGA 59.816 40.000 0.00 0.00 0.00 3.18
6487 6768 6.444633 GCATATTGCACAAAGAATCTGCTAT 58.555 36.000 0.00 0.00 44.26 2.97
6526 7193 9.783256 ACAGTTTTTAACATGACAAGAGTAAAC 57.217 29.630 0.00 1.13 0.00 2.01
6612 7279 8.806429 ATCAGGAACATTGTATGTAATGAACA 57.194 30.769 9.81 0.00 44.07 3.18
6633 7300 9.050601 GTTCCATGAAGTTCCTAAGATAATCAG 57.949 37.037 0.00 0.00 0.00 2.90
6643 7310 4.715534 TGTTGGTTCCATGAAGTTCCTA 57.284 40.909 0.00 0.00 0.00 2.94
6655 7322 2.286365 TCTTGGGTCATGTTGGTTCC 57.714 50.000 0.00 0.00 0.00 3.62
6692 7359 1.723870 GGCAGCTTATGTTCTGGCG 59.276 57.895 0.00 0.00 44.08 5.69
6703 7370 3.141398 CGGTCATGTAATATGGCAGCTT 58.859 45.455 0.00 0.00 0.00 3.74
6744 7411 3.257578 AGGCTCCTAAGTTTGTACCCTT 58.742 45.455 0.00 0.00 0.00 3.95
6746 7413 3.715638 AAGGCTCCTAAGTTTGTACCC 57.284 47.619 0.00 0.00 0.00 3.69
6748 7415 6.283544 AGAGTAAGGCTCCTAAGTTTGTAC 57.716 41.667 0.00 0.00 45.21 2.90
6758 7425 9.250246 GTCATAGATATTAAGAGTAAGGCTCCT 57.750 37.037 0.00 0.00 45.21 3.69
6774 7441 8.811017 CAGGTCTCAAATAGGTGTCATAGATAT 58.189 37.037 0.00 0.00 0.00 1.63
6778 7445 6.227298 ACAGGTCTCAAATAGGTGTCATAG 57.773 41.667 0.00 0.00 0.00 2.23
6779 7446 5.128827 GGACAGGTCTCAAATAGGTGTCATA 59.871 44.000 0.00 0.00 34.79 2.15
6789 7462 1.278985 TGCGATGGACAGGTCTCAAAT 59.721 47.619 0.00 0.00 0.00 2.32
6790 7463 0.684535 TGCGATGGACAGGTCTCAAA 59.315 50.000 0.00 0.00 0.00 2.69
6797 7470 1.376424 AAGTGCTGCGATGGACAGG 60.376 57.895 0.00 0.00 35.62 4.00
6834 7507 1.402613 CATCGCATCAGATTGCACCAA 59.597 47.619 0.00 0.00 42.91 3.67
6845 7518 6.513884 GCTTCCAAAGAATTATCATCGCATCA 60.514 38.462 0.00 0.00 0.00 3.07
6853 7526 2.687935 GCGGGCTTCCAAAGAATTATCA 59.312 45.455 0.00 0.00 0.00 2.15
6856 7529 2.507407 AGCGGGCTTCCAAAGAATTA 57.493 45.000 0.00 0.00 0.00 1.40
6880 7553 3.671928 GCTTTGTGCACTAGAATTTGCTG 59.328 43.478 19.41 0.00 42.31 4.41
6916 7589 3.117436 AGTGGTTAACCCTAAACTGGCAA 60.117 43.478 21.97 0.00 34.29 4.52
6917 7590 2.444010 AGTGGTTAACCCTAAACTGGCA 59.556 45.455 21.97 0.00 34.29 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.