Multiple sequence alignment - TraesCS3B01G428100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G428100 chr3B 100.000 2524 0 0 1 2524 666933068 666930545 0.000000e+00 4662.0
1 TraesCS3B01G428100 chr3B 96.327 599 21 1 1740 2338 668817813 668818410 0.000000e+00 983.0
2 TraesCS3B01G428100 chr3B 98.726 157 2 0 2368 2524 668820389 668820233 1.910000e-71 279.0
3 TraesCS3B01G428100 chr2B 97.826 598 13 0 1741 2338 85698012 85697415 0.000000e+00 1033.0
4 TraesCS3B01G428100 chr2B 89.831 118 12 0 1102 1219 90192264 90192381 4.350000e-33 152.0
5 TraesCS3B01G428100 chr2B 89.256 121 13 0 1099 1219 799132832 799132952 4.350000e-33 152.0
6 TraesCS3B01G428100 chr7A 97.324 598 16 0 1741 2338 122031628 122032225 0.000000e+00 1016.0
7 TraesCS3B01G428100 chr7A 98.235 170 2 1 2356 2524 122034032 122033863 1.900000e-76 296.0
8 TraesCS3B01G428100 chr5B 97.167 600 17 0 1739 2338 659593770 659593171 0.000000e+00 1014.0
9 TraesCS3B01G428100 chr5B 99.387 163 1 0 2362 2524 659591371 659591533 1.900000e-76 296.0
10 TraesCS3B01G428100 chr6B 96.990 598 18 0 1741 2338 24798070 24797473 0.000000e+00 1005.0
11 TraesCS3B01G428100 chr6B 98.246 57 1 0 1559 1615 306999381 306999437 1.600000e-17 100.0
12 TraesCS3B01G428100 chr4A 96.546 608 20 1 1731 2338 672266442 672267048 0.000000e+00 1005.0
13 TraesCS3B01G428100 chr4A 95.333 150 7 0 2375 2524 672268834 672268685 3.240000e-59 239.0
14 TraesCS3B01G428100 chr4A 98.246 57 1 0 1559 1615 295270993 295270937 1.600000e-17 100.0
15 TraesCS3B01G428100 chr7B 96.000 600 24 0 1739 2338 32464079 32464678 0.000000e+00 976.0
16 TraesCS3B01G428100 chr7B 96.154 598 21 1 1741 2338 704273185 704273780 0.000000e+00 976.0
17 TraesCS3B01G428100 chr7B 98.667 150 2 0 2375 2524 32466465 32466316 1.490000e-67 267.0
18 TraesCS3B01G428100 chr7B 98.667 150 2 0 2375 2524 704275547 704275398 1.490000e-67 267.0
19 TraesCS3B01G428100 chr7B 90.678 118 11 0 1102 1219 201454960 201454843 9.350000e-35 158.0
20 TraesCS3B01G428100 chr7B 87.903 124 15 0 1095 1218 726156531 726156654 2.020000e-31 147.0
21 TraesCS3B01G428100 chr6D 95.652 598 25 1 1741 2338 458724702 458725298 0.000000e+00 959.0
22 TraesCS3B01G428100 chr6D 96.053 152 6 0 2373 2524 458727095 458726944 5.390000e-62 248.0
23 TraesCS3B01G428100 chr3D 88.978 744 45 16 331 1064 505178548 505177832 0.000000e+00 885.0
24 TraesCS3B01G428100 chr3D 89.947 378 33 3 1258 1634 505177771 505177398 1.360000e-132 483.0
25 TraesCS3B01G428100 chr3D 87.037 108 11 2 1634 1739 505177354 505177248 4.410000e-23 119.0
26 TraesCS3B01G428100 chr3A 90.314 382 35 2 1254 1634 643220487 643220107 1.350000e-137 499.0
27 TraesCS3B01G428100 chr3A 86.073 438 25 17 331 750 643221331 643220912 2.980000e-119 438.0
28 TraesCS3B01G428100 chr3A 83.631 336 27 17 768 1084 643220858 643220532 8.830000e-75 291.0
29 TraesCS3B01G428100 chr3A 83.333 114 10 4 1634 1739 643220034 643219922 2.070000e-16 97.1
30 TraesCS3B01G428100 chr3A 100.000 51 0 0 249 299 643221387 643221337 7.430000e-16 95.3
31 TraesCS3B01G428100 chrUn 93.377 151 10 0 2374 2524 354816435 354816285 9.090000e-55 224.0
32 TraesCS3B01G428100 chrUn 96.491 57 2 0 1559 1615 189407692 189407636 7.430000e-16 95.3
33 TraesCS3B01G428100 chrUn 96.491 57 2 0 1559 1615 251408903 251408959 7.430000e-16 95.3
34 TraesCS3B01G428100 chrUn 96.491 57 2 0 1559 1615 345805751 345805695 7.430000e-16 95.3
35 TraesCS3B01G428100 chrUn 96.491 57 2 0 1559 1615 375321597 375321541 7.430000e-16 95.3
36 TraesCS3B01G428100 chr5A 93.377 151 10 0 2374 2524 52253990 52254140 9.090000e-55 224.0
37 TraesCS3B01G428100 chr5A 92.308 117 9 0 1102 1218 684628821 684628937 1.550000e-37 167.0
38 TraesCS3B01G428100 chr7D 90.984 122 11 0 1100 1221 8561963 8562084 5.590000e-37 165.0
39 TraesCS3B01G428100 chr2A 90.678 118 11 0 1102 1219 242680458 242680575 9.350000e-35 158.0
40 TraesCS3B01G428100 chr1B 90.083 121 12 0 1099 1219 357422875 357422995 9.350000e-35 158.0
41 TraesCS3B01G428100 chr1B 98.246 57 1 0 1559 1615 672475770 672475714 1.600000e-17 100.0
42 TraesCS3B01G428100 chr5D 89.744 117 12 0 1102 1218 384339600 384339716 1.560000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G428100 chr3B 666930545 666933068 2523 True 4662.000000 4662 100.0000 1 2524 1 chr3B.!!$R1 2523
1 TraesCS3B01G428100 chr3B 668817813 668818410 597 False 983.000000 983 96.3270 1740 2338 1 chr3B.!!$F1 598
2 TraesCS3B01G428100 chr2B 85697415 85698012 597 True 1033.000000 1033 97.8260 1741 2338 1 chr2B.!!$R1 597
3 TraesCS3B01G428100 chr7A 122031628 122032225 597 False 1016.000000 1016 97.3240 1741 2338 1 chr7A.!!$F1 597
4 TraesCS3B01G428100 chr5B 659593171 659593770 599 True 1014.000000 1014 97.1670 1739 2338 1 chr5B.!!$R1 599
5 TraesCS3B01G428100 chr6B 24797473 24798070 597 True 1005.000000 1005 96.9900 1741 2338 1 chr6B.!!$R1 597
6 TraesCS3B01G428100 chr4A 672266442 672267048 606 False 1005.000000 1005 96.5460 1731 2338 1 chr4A.!!$F1 607
7 TraesCS3B01G428100 chr7B 32464079 32464678 599 False 976.000000 976 96.0000 1739 2338 1 chr7B.!!$F1 599
8 TraesCS3B01G428100 chr7B 704273185 704273780 595 False 976.000000 976 96.1540 1741 2338 1 chr7B.!!$F2 597
9 TraesCS3B01G428100 chr6D 458724702 458725298 596 False 959.000000 959 95.6520 1741 2338 1 chr6D.!!$F1 597
10 TraesCS3B01G428100 chr3D 505177248 505178548 1300 True 495.666667 885 88.6540 331 1739 3 chr3D.!!$R1 1408
11 TraesCS3B01G428100 chr3A 643219922 643221387 1465 True 284.080000 499 88.6702 249 1739 5 chr3A.!!$R1 1490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.030638 ATGTTGCAACCGACAAGTGC 59.969 50.0 26.14 0.0 38.79 4.40 F
48 49 0.030638 GCAACCGACAAGTGCAACAT 59.969 50.0 0.00 0.0 41.43 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1176 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.0 0.0 0.0 0.0 2.73 R
1816 1982 1.104630 TCAGTTTTCGCCCGGTTTTT 58.895 45.0 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.563702 GTTTTCCCCGGCGTAATATGA 58.436 47.619 6.01 0.00 0.00 2.15
21 22 3.143728 GTTTTCCCCGGCGTAATATGAT 58.856 45.455 6.01 0.00 0.00 2.45
22 23 2.754946 TTCCCCGGCGTAATATGATC 57.245 50.000 6.01 0.00 0.00 2.92
23 24 0.899720 TCCCCGGCGTAATATGATCC 59.100 55.000 6.01 0.00 0.00 3.36
24 25 0.611200 CCCCGGCGTAATATGATCCA 59.389 55.000 6.01 0.00 0.00 3.41
25 26 1.209504 CCCCGGCGTAATATGATCCAT 59.790 52.381 6.01 0.00 0.00 3.41
26 27 2.279741 CCCGGCGTAATATGATCCATG 58.720 52.381 6.01 0.00 0.00 3.66
27 28 2.354704 CCCGGCGTAATATGATCCATGT 60.355 50.000 6.01 0.00 0.00 3.21
28 29 3.334691 CCGGCGTAATATGATCCATGTT 58.665 45.455 6.01 0.00 0.00 2.71
29 30 3.125146 CCGGCGTAATATGATCCATGTTG 59.875 47.826 6.01 0.00 0.00 3.33
30 31 3.424829 CGGCGTAATATGATCCATGTTGC 60.425 47.826 0.00 0.00 0.00 4.17
31 32 3.501828 GGCGTAATATGATCCATGTTGCA 59.498 43.478 0.00 0.00 30.11 4.08
32 33 4.023279 GGCGTAATATGATCCATGTTGCAA 60.023 41.667 0.00 0.00 30.11 4.08
33 34 4.911610 GCGTAATATGATCCATGTTGCAAC 59.088 41.667 22.83 22.83 30.11 4.17
34 35 5.451908 CGTAATATGATCCATGTTGCAACC 58.548 41.667 26.14 10.45 30.11 3.77
35 36 4.572985 AATATGATCCATGTTGCAACCG 57.427 40.909 26.14 16.86 0.00 4.44
36 37 2.127271 ATGATCCATGTTGCAACCGA 57.873 45.000 26.14 18.29 0.00 4.69
37 38 1.164411 TGATCCATGTTGCAACCGAC 58.836 50.000 26.14 11.99 0.00 4.79
38 39 1.164411 GATCCATGTTGCAACCGACA 58.836 50.000 26.14 9.39 39.60 4.35
39 40 1.539388 GATCCATGTTGCAACCGACAA 59.461 47.619 26.14 8.09 38.79 3.18
40 41 0.950836 TCCATGTTGCAACCGACAAG 59.049 50.000 26.14 5.83 38.79 3.16
41 42 0.667993 CCATGTTGCAACCGACAAGT 59.332 50.000 26.14 1.58 38.79 3.16
42 43 1.600164 CCATGTTGCAACCGACAAGTG 60.600 52.381 26.14 12.59 38.79 3.16
43 44 0.030638 ATGTTGCAACCGACAAGTGC 59.969 50.000 26.14 0.00 38.79 4.40
44 45 1.308783 TGTTGCAACCGACAAGTGCA 61.309 50.000 26.14 0.84 32.42 4.57
45 46 0.179150 GTTGCAACCGACAAGTGCAA 60.179 50.000 19.15 6.22 42.24 4.08
46 47 0.179150 TTGCAACCGACAAGTGCAAC 60.179 50.000 6.22 0.00 40.04 4.17
47 48 1.308783 TGCAACCGACAAGTGCAACA 61.309 50.000 0.00 0.00 41.43 3.33
48 49 0.030638 GCAACCGACAAGTGCAACAT 59.969 50.000 0.00 0.00 41.43 2.71
49 50 1.535860 GCAACCGACAAGTGCAACATT 60.536 47.619 0.00 0.00 41.43 2.71
50 51 2.808244 CAACCGACAAGTGCAACATTT 58.192 42.857 0.00 0.00 41.43 2.32
51 52 2.774439 ACCGACAAGTGCAACATTTC 57.226 45.000 0.00 0.00 41.43 2.17
52 53 2.297701 ACCGACAAGTGCAACATTTCT 58.702 42.857 0.00 0.00 41.43 2.52
53 54 2.290641 ACCGACAAGTGCAACATTTCTC 59.709 45.455 0.00 0.00 41.43 2.87
54 55 2.290367 CCGACAAGTGCAACATTTCTCA 59.710 45.455 0.00 0.00 41.43 3.27
55 56 3.058016 CCGACAAGTGCAACATTTCTCAT 60.058 43.478 0.00 0.00 41.43 2.90
56 57 3.910170 CGACAAGTGCAACATTTCTCATG 59.090 43.478 0.00 0.00 41.43 3.07
57 58 4.555313 CGACAAGTGCAACATTTCTCATGT 60.555 41.667 0.00 0.00 41.43 3.21
58 59 5.266733 ACAAGTGCAACATTTCTCATGTT 57.733 34.783 0.00 0.00 42.38 2.71
59 60 6.389830 ACAAGTGCAACATTTCTCATGTTA 57.610 33.333 0.00 0.00 39.94 2.41
60 61 6.208644 ACAAGTGCAACATTTCTCATGTTAC 58.791 36.000 0.00 0.00 39.94 2.50
61 62 6.183360 ACAAGTGCAACATTTCTCATGTTACA 60.183 34.615 0.00 0.00 39.94 2.41
62 63 6.389830 AGTGCAACATTTCTCATGTTACAA 57.610 33.333 2.83 0.00 39.94 2.41
63 64 6.985117 AGTGCAACATTTCTCATGTTACAAT 58.015 32.000 2.83 0.00 39.94 2.71
64 65 7.086376 AGTGCAACATTTCTCATGTTACAATC 58.914 34.615 2.83 0.00 39.94 2.67
65 66 6.032775 GTGCAACATTTCTCATGTTACAATCG 59.967 38.462 2.83 0.00 39.94 3.34
66 67 6.086222 GCAACATTTCTCATGTTACAATCGT 58.914 36.000 0.00 0.00 39.94 3.73
67 68 6.032775 GCAACATTTCTCATGTTACAATCGTG 59.967 38.462 0.00 0.00 39.94 4.35
68 69 6.182039 ACATTTCTCATGTTACAATCGTGG 57.818 37.500 0.00 0.00 0.00 4.94
69 70 5.705441 ACATTTCTCATGTTACAATCGTGGT 59.295 36.000 0.00 0.00 0.00 4.16
70 71 5.856126 TTTCTCATGTTACAATCGTGGTC 57.144 39.130 0.00 0.00 0.00 4.02
71 72 4.529109 TCTCATGTTACAATCGTGGTCA 57.471 40.909 0.00 0.00 0.00 4.02
72 73 4.494484 TCTCATGTTACAATCGTGGTCAG 58.506 43.478 0.00 0.00 0.00 3.51
73 74 4.219725 TCTCATGTTACAATCGTGGTCAGA 59.780 41.667 0.00 0.00 0.00 3.27
74 75 5.084818 TCATGTTACAATCGTGGTCAGAT 57.915 39.130 0.00 0.00 0.00 2.90
75 76 6.096282 TCTCATGTTACAATCGTGGTCAGATA 59.904 38.462 0.00 0.00 0.00 1.98
76 77 6.635755 TCATGTTACAATCGTGGTCAGATAA 58.364 36.000 0.00 0.00 0.00 1.75
77 78 6.533723 TCATGTTACAATCGTGGTCAGATAAC 59.466 38.462 0.00 0.00 0.00 1.89
78 79 5.785243 TGTTACAATCGTGGTCAGATAACA 58.215 37.500 0.00 0.00 0.00 2.41
79 80 5.636121 TGTTACAATCGTGGTCAGATAACAC 59.364 40.000 0.00 0.00 0.00 3.32
99 100 4.277515 ACGATAGGGACCATCATGAATG 57.722 45.455 0.00 0.00 43.77 2.67
100 101 3.648067 ACGATAGGGACCATCATGAATGT 59.352 43.478 0.00 0.00 43.77 2.71
101 102 4.103153 ACGATAGGGACCATCATGAATGTT 59.897 41.667 0.00 0.00 43.77 2.71
102 103 5.065914 CGATAGGGACCATCATGAATGTTT 58.934 41.667 0.00 0.00 33.13 2.83
103 104 5.532406 CGATAGGGACCATCATGAATGTTTT 59.468 40.000 0.00 0.00 33.13 2.43
104 105 6.293626 CGATAGGGACCATCATGAATGTTTTC 60.294 42.308 0.00 0.00 33.13 2.29
105 106 4.026052 AGGGACCATCATGAATGTTTTCC 58.974 43.478 0.00 0.17 33.13 3.13
106 107 4.026052 GGGACCATCATGAATGTTTTCCT 58.974 43.478 0.00 0.00 33.13 3.36
107 108 4.098501 GGGACCATCATGAATGTTTTCCTC 59.901 45.833 0.00 0.00 33.13 3.71
108 109 4.706476 GGACCATCATGAATGTTTTCCTCA 59.294 41.667 0.00 0.00 33.13 3.86
109 110 5.185635 GGACCATCATGAATGTTTTCCTCAA 59.814 40.000 0.00 0.00 33.13 3.02
110 111 6.029346 ACCATCATGAATGTTTTCCTCAAC 57.971 37.500 0.00 0.00 33.13 3.18
111 112 5.539574 ACCATCATGAATGTTTTCCTCAACA 59.460 36.000 0.00 0.00 40.92 3.33
112 113 5.865552 CCATCATGAATGTTTTCCTCAACAC 59.134 40.000 0.00 0.00 39.48 3.32
113 114 6.448852 CATCATGAATGTTTTCCTCAACACA 58.551 36.000 0.00 0.00 39.48 3.72
114 115 6.462552 TCATGAATGTTTTCCTCAACACAA 57.537 33.333 0.00 0.00 39.48 3.33
115 116 6.272318 TCATGAATGTTTTCCTCAACACAAC 58.728 36.000 0.00 0.00 39.48 3.32
116 117 4.667262 TGAATGTTTTCCTCAACACAACG 58.333 39.130 0.00 0.00 39.48 4.10
117 118 4.156922 TGAATGTTTTCCTCAACACAACGT 59.843 37.500 0.00 0.00 39.48 3.99
118 119 3.479505 TGTTTTCCTCAACACAACGTG 57.520 42.857 0.00 0.00 39.75 4.49
119 120 3.075148 TGTTTTCCTCAACACAACGTGA 58.925 40.909 0.24 0.00 36.96 4.35
120 121 3.126171 TGTTTTCCTCAACACAACGTGAG 59.874 43.478 0.24 0.00 36.96 3.51
121 122 5.337347 TGTTTTCCTCAACACAACGTGAGT 61.337 41.667 0.24 0.00 37.61 3.41
122 123 6.083422 TGTTTTCCTCAACACAACGTGAGTA 61.083 40.000 0.24 0.00 35.85 2.59
123 124 7.510720 TGTTTTCCTCAACACAACGTGAGTAA 61.511 38.462 0.24 0.00 35.85 2.24
124 125 8.751439 TGTTTTCCTCAACACAACGTGAGTAAT 61.751 37.037 0.24 0.00 35.85 1.89
133 134 2.060326 ACGTGAGTAATGTCACACCG 57.940 50.000 4.97 0.00 46.19 4.94
134 135 1.610038 ACGTGAGTAATGTCACACCGA 59.390 47.619 4.97 0.00 46.19 4.69
135 136 2.230508 ACGTGAGTAATGTCACACCGAT 59.769 45.455 4.97 0.00 46.19 4.18
136 137 2.598637 CGTGAGTAATGTCACACCGATG 59.401 50.000 4.97 0.00 46.19 3.84
137 138 3.672241 CGTGAGTAATGTCACACCGATGA 60.672 47.826 4.97 0.00 46.19 2.92
138 139 3.859961 GTGAGTAATGTCACACCGATGAG 59.140 47.826 0.00 0.00 45.34 2.90
139 140 2.860735 GAGTAATGTCACACCGATGAGC 59.139 50.000 0.00 0.00 0.00 4.26
140 141 1.588404 GTAATGTCACACCGATGAGCG 59.412 52.381 0.00 0.00 40.47 5.03
141 142 1.361668 AATGTCACACCGATGAGCGC 61.362 55.000 0.00 0.00 39.11 5.92
142 143 2.432456 GTCACACCGATGAGCGCA 60.432 61.111 11.47 0.00 39.11 6.09
143 144 2.027073 GTCACACCGATGAGCGCAA 61.027 57.895 11.47 0.00 39.11 4.85
144 145 1.079197 TCACACCGATGAGCGCAAT 60.079 52.632 11.47 1.82 39.11 3.56
145 146 0.174617 TCACACCGATGAGCGCAATA 59.825 50.000 11.47 0.00 39.11 1.90
146 147 1.202521 TCACACCGATGAGCGCAATAT 60.203 47.619 11.47 0.00 39.11 1.28
147 148 1.070376 CACACCGATGAGCGCAATATG 60.070 52.381 11.47 5.19 39.11 1.78
148 149 0.514255 CACCGATGAGCGCAATATGG 59.486 55.000 11.47 8.44 39.11 2.74
149 150 1.230635 ACCGATGAGCGCAATATGGC 61.231 55.000 11.47 0.00 39.11 4.40
150 151 0.952497 CCGATGAGCGCAATATGGCT 60.952 55.000 11.47 0.00 43.42 4.75
155 156 3.409201 AGCGCAATATGGCTCATGT 57.591 47.368 11.47 0.00 33.32 3.21
156 157 1.683943 AGCGCAATATGGCTCATGTT 58.316 45.000 11.47 0.00 33.32 2.71
157 158 1.335810 AGCGCAATATGGCTCATGTTG 59.664 47.619 11.47 15.47 42.87 3.33
172 173 3.604130 GTTGCAAACGGATGGATCG 57.396 52.632 0.00 0.00 36.92 3.69
173 174 0.523335 GTTGCAAACGGATGGATCGC 60.523 55.000 0.00 0.00 36.92 4.58
174 175 1.653094 TTGCAAACGGATGGATCGCC 61.653 55.000 0.00 0.00 0.00 5.54
179 180 2.106131 CGGATGGATCGCCGTGAA 59.894 61.111 10.93 0.00 42.49 3.18
180 181 2.237751 CGGATGGATCGCCGTGAAC 61.238 63.158 10.93 0.00 42.49 3.18
181 182 2.237751 GGATGGATCGCCGTGAACG 61.238 63.158 0.00 0.00 36.79 3.95
182 183 1.226859 GATGGATCGCCGTGAACGA 60.227 57.895 4.03 0.00 44.75 3.85
183 184 1.480219 GATGGATCGCCGTGAACGAC 61.480 60.000 4.03 0.00 43.23 4.34
184 185 1.945354 ATGGATCGCCGTGAACGACT 61.945 55.000 4.03 0.00 43.23 4.18
185 186 2.158959 GGATCGCCGTGAACGACTG 61.159 63.158 4.03 0.00 43.23 3.51
186 187 2.789203 GATCGCCGTGAACGACTGC 61.789 63.158 4.03 0.00 43.23 4.40
197 198 3.207354 CGACTGCCGTGGGTAGAT 58.793 61.111 6.76 0.00 37.63 1.98
198 199 1.065928 CGACTGCCGTGGGTAGATC 59.934 63.158 6.76 0.65 37.63 2.75
199 200 1.065928 GACTGCCGTGGGTAGATCG 59.934 63.158 6.76 0.00 37.63 3.69
200 201 2.351336 GACTGCCGTGGGTAGATCGG 62.351 65.000 6.76 0.00 45.94 4.18
201 202 2.043752 TGCCGTGGGTAGATCGGA 60.044 61.111 7.01 0.00 46.05 4.55
202 203 2.351336 CTGCCGTGGGTAGATCGGAC 62.351 65.000 7.01 0.00 46.05 4.79
203 204 2.719979 CCGTGGGTAGATCGGACG 59.280 66.667 0.00 0.00 46.05 4.79
204 205 2.719979 CGTGGGTAGATCGGACGG 59.280 66.667 0.00 0.00 0.00 4.79
205 206 2.117156 CGTGGGTAGATCGGACGGT 61.117 63.158 0.00 0.00 0.00 4.83
206 207 1.660560 CGTGGGTAGATCGGACGGTT 61.661 60.000 0.00 0.00 0.00 4.44
207 208 0.179119 GTGGGTAGATCGGACGGTTG 60.179 60.000 0.00 0.00 0.00 3.77
208 209 0.612732 TGGGTAGATCGGACGGTTGT 60.613 55.000 0.00 0.00 0.00 3.32
209 210 0.179119 GGGTAGATCGGACGGTTGTG 60.179 60.000 0.00 0.00 0.00 3.33
210 211 0.179119 GGTAGATCGGACGGTTGTGG 60.179 60.000 0.00 0.00 0.00 4.17
211 212 0.804933 GTAGATCGGACGGTTGTGGC 60.805 60.000 0.00 0.00 0.00 5.01
212 213 2.274232 TAGATCGGACGGTTGTGGCG 62.274 60.000 0.00 0.00 0.00 5.69
216 217 4.025401 GGACGGTTGTGGCGCAAG 62.025 66.667 14.75 6.10 37.83 4.01
217 218 2.970324 GACGGTTGTGGCGCAAGA 60.970 61.111 14.75 0.00 37.83 3.02
218 219 2.281484 ACGGTTGTGGCGCAAGAT 60.281 55.556 14.75 0.00 37.83 2.40
219 220 2.240612 GACGGTTGTGGCGCAAGATC 62.241 60.000 14.75 8.29 37.83 2.75
220 221 2.877691 GGTTGTGGCGCAAGATCC 59.122 61.111 14.75 8.45 37.83 3.36
221 222 1.971167 GGTTGTGGCGCAAGATCCA 60.971 57.895 14.75 0.00 37.83 3.41
222 223 1.523154 GGTTGTGGCGCAAGATCCAA 61.523 55.000 14.75 0.00 37.83 3.53
223 224 0.387239 GTTGTGGCGCAAGATCCAAC 60.387 55.000 14.75 4.84 37.83 3.77
224 225 1.851021 TTGTGGCGCAAGATCCAACG 61.851 55.000 10.83 0.00 43.02 4.10
225 226 2.745884 TGGCGCAAGATCCAACGG 60.746 61.111 10.83 0.00 43.02 4.44
226 227 4.179579 GGCGCAAGATCCAACGGC 62.180 66.667 10.83 9.14 43.82 5.68
227 228 3.127533 GCGCAAGATCCAACGGCT 61.128 61.111 0.30 0.00 43.02 5.52
228 229 3.093278 CGCAAGATCCAACGGCTC 58.907 61.111 0.00 0.00 43.02 4.70
229 230 1.448540 CGCAAGATCCAACGGCTCT 60.449 57.895 0.00 0.00 43.02 4.09
230 231 0.179111 CGCAAGATCCAACGGCTCTA 60.179 55.000 0.00 0.00 43.02 2.43
231 232 1.739035 CGCAAGATCCAACGGCTCTAA 60.739 52.381 0.00 0.00 43.02 2.10
232 233 2.356135 GCAAGATCCAACGGCTCTAAA 58.644 47.619 0.00 0.00 27.20 1.85
233 234 2.352960 GCAAGATCCAACGGCTCTAAAG 59.647 50.000 0.00 0.00 27.20 1.85
234 235 2.939103 CAAGATCCAACGGCTCTAAAGG 59.061 50.000 0.00 0.00 27.20 3.11
235 236 1.134371 AGATCCAACGGCTCTAAAGGC 60.134 52.381 0.00 0.00 44.42 4.35
241 242 4.157120 GGCTCTAAAGGCGGCGGA 62.157 66.667 9.78 0.02 38.44 5.54
242 243 2.109181 GCTCTAAAGGCGGCGGAT 59.891 61.111 9.78 0.00 0.00 4.18
243 244 1.956678 GCTCTAAAGGCGGCGGATC 60.957 63.158 9.78 0.00 0.00 3.36
244 245 1.301009 CTCTAAAGGCGGCGGATCC 60.301 63.158 9.78 0.00 0.00 3.36
306 307 4.752879 GGCCGTGCAGTCGCCTAA 62.753 66.667 10.65 0.00 37.32 2.69
307 308 3.488090 GCCGTGCAGTCGCCTAAC 61.488 66.667 0.00 0.00 37.32 2.34
308 309 2.048597 CCGTGCAGTCGCCTAACA 60.049 61.111 0.00 0.00 37.32 2.41
309 310 1.447838 CCGTGCAGTCGCCTAACAT 60.448 57.895 0.00 0.00 37.32 2.71
310 311 1.019278 CCGTGCAGTCGCCTAACATT 61.019 55.000 0.00 0.00 37.32 2.71
311 312 0.370273 CGTGCAGTCGCCTAACATTC 59.630 55.000 0.00 0.00 37.32 2.67
312 313 0.370273 GTGCAGTCGCCTAACATTCG 59.630 55.000 0.00 0.00 37.32 3.34
313 314 0.739462 TGCAGTCGCCTAACATTCGG 60.739 55.000 0.00 0.00 37.32 4.30
314 315 1.429148 GCAGTCGCCTAACATTCGGG 61.429 60.000 0.00 0.00 0.00 5.14
315 316 0.174845 CAGTCGCCTAACATTCGGGA 59.825 55.000 0.00 0.00 0.00 5.14
316 317 1.120530 AGTCGCCTAACATTCGGGAT 58.879 50.000 0.00 0.00 0.00 3.85
317 318 1.068741 AGTCGCCTAACATTCGGGATC 59.931 52.381 0.00 0.00 0.00 3.36
318 319 1.068741 GTCGCCTAACATTCGGGATCT 59.931 52.381 0.00 0.00 0.00 2.75
319 320 1.340248 TCGCCTAACATTCGGGATCTC 59.660 52.381 0.00 0.00 0.00 2.75
320 321 1.341531 CGCCTAACATTCGGGATCTCT 59.658 52.381 0.00 0.00 0.00 3.10
321 322 2.224066 CGCCTAACATTCGGGATCTCTT 60.224 50.000 0.00 0.00 0.00 2.85
322 323 3.005472 CGCCTAACATTCGGGATCTCTTA 59.995 47.826 0.00 0.00 0.00 2.10
323 324 4.308265 GCCTAACATTCGGGATCTCTTAC 58.692 47.826 0.00 0.00 0.00 2.34
324 325 4.799917 GCCTAACATTCGGGATCTCTTACC 60.800 50.000 0.00 0.00 0.00 2.85
325 326 4.589374 CCTAACATTCGGGATCTCTTACCT 59.411 45.833 0.00 0.00 0.00 3.08
326 327 5.773680 CCTAACATTCGGGATCTCTTACCTA 59.226 44.000 0.00 0.00 0.00 3.08
327 328 6.267014 CCTAACATTCGGGATCTCTTACCTAA 59.733 42.308 0.00 0.00 0.00 2.69
328 329 6.555463 AACATTCGGGATCTCTTACCTAAA 57.445 37.500 0.00 0.00 0.00 1.85
329 330 6.555463 ACATTCGGGATCTCTTACCTAAAA 57.445 37.500 0.00 0.00 0.00 1.52
367 368 6.370718 TCTCTTACAAAGAAGCCGTTAATTCC 59.629 38.462 0.00 0.00 37.02 3.01
386 387 2.174107 CGCCGCATATTCGCATGG 59.826 61.111 0.00 0.00 0.00 3.66
388 389 2.562912 CCGCATATTCGCATGGGC 59.437 61.111 4.59 0.00 37.49 5.36
389 390 1.968017 CCGCATATTCGCATGGGCT 60.968 57.895 4.59 0.00 37.49 5.19
390 391 1.208358 CGCATATTCGCATGGGCTG 59.792 57.895 4.59 1.52 38.10 4.85
391 392 1.229975 CGCATATTCGCATGGGCTGA 61.230 55.000 4.59 0.00 38.10 4.26
392 393 1.171308 GCATATTCGCATGGGCTGAT 58.829 50.000 4.59 2.05 38.10 2.90
393 394 1.135489 GCATATTCGCATGGGCTGATG 60.135 52.381 4.59 8.69 38.10 3.07
394 395 1.471287 CATATTCGCATGGGCTGATGG 59.529 52.381 4.59 0.00 38.10 3.51
395 396 0.250858 TATTCGCATGGGCTGATGGG 60.251 55.000 4.59 7.48 38.10 4.00
396 397 4.881440 TCGCATGGGCTGATGGGC 62.881 66.667 4.59 0.00 36.48 5.36
421 422 3.554524 CACCGAACAAAAGCACATACTG 58.445 45.455 0.00 0.00 0.00 2.74
431 432 1.858091 GCACATACTGCTACGATGCT 58.142 50.000 0.00 0.00 43.33 3.79
447 449 3.606846 CGATGCTTTTTCGTGACACACAT 60.607 43.478 6.37 0.00 33.40 3.21
564 581 2.029486 CGAACGAACGAACCTTTGAACA 59.971 45.455 0.14 0.00 35.09 3.18
590 607 5.650266 TGGCCACGACAATACAAAAATCTAT 59.350 36.000 0.00 0.00 0.00 1.98
617 634 2.127869 CATTCCCGGCGAGAGGAGA 61.128 63.158 9.30 0.00 32.57 3.71
626 643 1.502640 CGAGAGGAGACGCGAAAGT 59.497 57.895 15.93 0.00 34.13 2.66
640 657 2.372350 CGAAAGTTGTCGTGGCTTTTC 58.628 47.619 0.00 0.00 36.26 2.29
644 661 0.822121 GTTGTCGTGGCTTTTCCCCT 60.822 55.000 0.00 0.00 0.00 4.79
645 662 0.821711 TTGTCGTGGCTTTTCCCCTG 60.822 55.000 0.00 0.00 0.00 4.45
647 664 2.115266 CGTGGCTTTTCCCCTGGT 59.885 61.111 0.00 0.00 0.00 4.00
649 666 1.524008 CGTGGCTTTTCCCCTGGTTC 61.524 60.000 0.00 0.00 0.00 3.62
650 667 0.178961 GTGGCTTTTCCCCTGGTTCT 60.179 55.000 0.00 0.00 0.00 3.01
651 668 0.178964 TGGCTTTTCCCCTGGTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
652 669 0.900182 GGCTTTTCCCCTGGTTCTGG 60.900 60.000 0.00 0.00 0.00 3.86
653 670 0.178961 GCTTTTCCCCTGGTTCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
654 671 1.757764 GCTTTTCCCCTGGTTCTGGTT 60.758 52.381 0.00 0.00 0.00 3.67
655 672 2.239400 CTTTTCCCCTGGTTCTGGTTC 58.761 52.381 0.00 0.00 0.00 3.62
656 673 1.529744 TTTCCCCTGGTTCTGGTTCT 58.470 50.000 0.00 0.00 0.00 3.01
657 674 0.771127 TTCCCCTGGTTCTGGTTCTG 59.229 55.000 0.00 0.00 0.00 3.02
658 675 1.133809 TCCCCTGGTTCTGGTTCTGG 61.134 60.000 0.00 0.00 0.00 3.86
678 697 2.275380 GGTTGGCCAGCGAATTGGT 61.275 57.895 13.95 0.00 40.49 3.67
694 713 0.321210 TGGTCTACAACACATGGCCG 60.321 55.000 0.00 0.00 0.00 6.13
695 714 0.321298 GGTCTACAACACATGGCCGT 60.321 55.000 0.00 0.00 0.00 5.68
725 744 0.609131 CCACCTACAGGCCAACTTGG 60.609 60.000 5.01 3.10 41.55 3.61
835 895 2.213499 CATGAGCCTTCGTATCCAACC 58.787 52.381 0.00 0.00 0.00 3.77
886 948 5.096169 CCTCGCTTCATGGTCTATATAACG 58.904 45.833 0.00 0.00 0.00 3.18
927 989 3.134623 TCCTCCTCACATCGCACATAATT 59.865 43.478 0.00 0.00 0.00 1.40
934 996 6.479990 CCTCACATCGCACATAATTTTAGAGA 59.520 38.462 0.00 0.00 0.00 3.10
954 1024 6.471146 AGAGACATTTTACAAGAGAGCACAT 58.529 36.000 0.00 0.00 0.00 3.21
995 1065 8.006564 AGAGAAGAGAAGAGAACATATCCTGAT 58.993 37.037 0.00 0.00 0.00 2.90
1014 1091 0.547471 TCCCCATGGAGAGAGTTGCA 60.547 55.000 15.22 0.00 35.03 4.08
1023 1100 3.431683 GAGAGTTGCATCGCGCTGC 62.432 63.158 26.79 26.79 43.06 5.25
1047 1124 0.884704 GCCTTCTCGCACAAAGGTCA 60.885 55.000 9.11 0.00 43.34 4.02
1050 1127 0.106708 TTCTCGCACAAAGGTCAGCT 59.893 50.000 0.00 0.00 0.00 4.24
1051 1128 0.106708 TCTCGCACAAAGGTCAGCTT 59.893 50.000 0.00 0.00 0.00 3.74
1053 1130 1.334869 CTCGCACAAAGGTCAGCTTTT 59.665 47.619 0.00 0.00 0.00 2.27
1054 1131 2.548057 CTCGCACAAAGGTCAGCTTTTA 59.452 45.455 0.00 0.00 0.00 1.52
1055 1132 2.548057 TCGCACAAAGGTCAGCTTTTAG 59.452 45.455 0.00 0.00 0.00 1.85
1056 1133 2.666026 GCACAAAGGTCAGCTTTTAGC 58.334 47.619 0.00 3.12 42.84 3.09
1057 1134 2.608016 GCACAAAGGTCAGCTTTTAGCC 60.608 50.000 0.00 0.00 43.77 3.93
1058 1135 1.880027 ACAAAGGTCAGCTTTTAGCCG 59.120 47.619 0.00 0.00 43.77 5.52
1059 1136 1.880027 CAAAGGTCAGCTTTTAGCCGT 59.120 47.619 0.00 0.00 43.77 5.68
1060 1137 1.809684 AAGGTCAGCTTTTAGCCGTC 58.190 50.000 0.00 0.00 43.77 4.79
1061 1138 0.685097 AGGTCAGCTTTTAGCCGTCA 59.315 50.000 0.00 0.00 43.77 4.35
1062 1139 1.279271 AGGTCAGCTTTTAGCCGTCAT 59.721 47.619 0.00 0.00 43.77 3.06
1063 1140 2.500098 AGGTCAGCTTTTAGCCGTCATA 59.500 45.455 0.00 0.00 43.77 2.15
1064 1141 3.134804 AGGTCAGCTTTTAGCCGTCATAT 59.865 43.478 0.00 0.00 43.77 1.78
1091 1168 5.163195 ACGGGATGCATTTAGATAGAACCTT 60.163 40.000 0.00 0.00 0.00 3.50
1092 1169 5.180117 CGGGATGCATTTAGATAGAACCTTG 59.820 44.000 0.00 0.00 0.00 3.61
1093 1170 6.064717 GGGATGCATTTAGATAGAACCTTGT 58.935 40.000 0.00 0.00 0.00 3.16
1095 1172 7.719633 GGGATGCATTTAGATAGAACCTTGTTA 59.280 37.037 0.00 0.00 0.00 2.41
1098 1175 9.632638 ATGCATTTAGATAGAACCTTGTTATGT 57.367 29.630 0.00 0.00 0.00 2.29
1106 1183 9.134055 AGATAGAACCTTGTTATGTACTACTCC 57.866 37.037 0.00 0.00 0.00 3.85
1108 1185 6.262207 AGAACCTTGTTATGTACTACTCCCT 58.738 40.000 0.00 0.00 0.00 4.20
1109 1186 6.380560 AGAACCTTGTTATGTACTACTCCCTC 59.619 42.308 0.00 0.00 0.00 4.30
1110 1187 4.961099 ACCTTGTTATGTACTACTCCCTCC 59.039 45.833 0.00 0.00 0.00 4.30
1111 1188 4.037684 CCTTGTTATGTACTACTCCCTCCG 59.962 50.000 0.00 0.00 0.00 4.63
1112 1189 4.240881 TGTTATGTACTACTCCCTCCGT 57.759 45.455 0.00 0.00 0.00 4.69
1113 1190 4.202441 TGTTATGTACTACTCCCTCCGTC 58.798 47.826 0.00 0.00 0.00 4.79
1114 1191 2.361643 ATGTACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
1115 1192 0.107508 TGTACTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
1116 1193 0.179000 GTACTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
1117 1194 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
1118 1195 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1119 1196 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1120 1197 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1121 1198 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1122 1199 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1123 1200 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1124 1201 1.753073 TCCCTCCGTCCGAAAATACTC 59.247 52.381 0.00 0.00 0.00 2.59
1125 1202 1.535437 CCCTCCGTCCGAAAATACTCG 60.535 57.143 0.00 0.00 38.58 4.18
1126 1203 1.133790 CCTCCGTCCGAAAATACTCGT 59.866 52.381 0.00 0.00 37.11 4.18
1127 1204 2.448219 CTCCGTCCGAAAATACTCGTC 58.552 52.381 0.00 0.00 37.11 4.20
1128 1205 1.186030 CCGTCCGAAAATACTCGTCG 58.814 55.000 0.00 0.00 37.11 5.12
1129 1206 1.202065 CCGTCCGAAAATACTCGTCGA 60.202 52.381 0.00 0.00 36.83 4.20
1130 1207 2.508867 CGTCCGAAAATACTCGTCGAA 58.491 47.619 0.00 0.00 36.83 3.71
1131 1208 2.525096 CGTCCGAAAATACTCGTCGAAG 59.475 50.000 0.00 0.00 36.83 3.79
1132 1209 2.850647 GTCCGAAAATACTCGTCGAAGG 59.149 50.000 0.00 0.00 37.11 3.46
1133 1210 2.749076 TCCGAAAATACTCGTCGAAGGA 59.251 45.455 0.00 0.00 37.11 3.36
1134 1211 3.191162 TCCGAAAATACTCGTCGAAGGAA 59.809 43.478 0.00 0.00 37.11 3.36
1135 1212 4.110482 CCGAAAATACTCGTCGAAGGAAT 58.890 43.478 0.00 0.00 37.11 3.01
1136 1213 4.026804 CCGAAAATACTCGTCGAAGGAATG 60.027 45.833 0.00 0.00 37.11 2.67
1137 1214 4.796830 CGAAAATACTCGTCGAAGGAATGA 59.203 41.667 0.00 0.00 36.92 2.57
1138 1215 5.287752 CGAAAATACTCGTCGAAGGAATGAA 59.712 40.000 0.00 0.00 36.92 2.57
1139 1216 6.019801 CGAAAATACTCGTCGAAGGAATGAAT 60.020 38.462 0.00 0.00 36.92 2.57
1140 1217 7.166970 CGAAAATACTCGTCGAAGGAATGAATA 59.833 37.037 0.00 0.00 36.92 1.75
1141 1218 8.888579 AAAATACTCGTCGAAGGAATGAATAT 57.111 30.769 0.00 0.00 0.00 1.28
1142 1219 9.976511 AAAATACTCGTCGAAGGAATGAATATA 57.023 29.630 0.00 0.00 0.00 0.86
1144 1221 9.790389 AATACTCGTCGAAGGAATGAATATATC 57.210 33.333 0.00 0.00 0.00 1.63
1145 1222 7.455641 ACTCGTCGAAGGAATGAATATATCT 57.544 36.000 0.00 0.00 0.00 1.98
1146 1223 8.563123 ACTCGTCGAAGGAATGAATATATCTA 57.437 34.615 0.00 0.00 0.00 1.98
1147 1224 8.670135 ACTCGTCGAAGGAATGAATATATCTAG 58.330 37.037 0.00 0.00 0.00 2.43
1148 1225 8.788325 TCGTCGAAGGAATGAATATATCTAGA 57.212 34.615 0.00 0.00 0.00 2.43
1149 1226 8.666573 TCGTCGAAGGAATGAATATATCTAGAC 58.333 37.037 0.00 0.00 0.00 2.59
1150 1227 7.636745 CGTCGAAGGAATGAATATATCTAGACG 59.363 40.741 0.00 10.45 38.23 4.18
1151 1228 8.452534 GTCGAAGGAATGAATATATCTAGACGT 58.547 37.037 0.00 0.00 0.00 4.34
1152 1229 9.662947 TCGAAGGAATGAATATATCTAGACGTA 57.337 33.333 0.00 0.00 0.00 3.57
1204 1281 8.786826 ATACATTTCTTTGACGAGTATTTCCA 57.213 30.769 0.00 0.00 0.00 3.53
1205 1282 7.133891 ACATTTCTTTGACGAGTATTTCCAG 57.866 36.000 0.00 0.00 0.00 3.86
1206 1283 6.934645 ACATTTCTTTGACGAGTATTTCCAGA 59.065 34.615 0.00 0.00 0.00 3.86
1207 1284 6.780706 TTTCTTTGACGAGTATTTCCAGAC 57.219 37.500 0.00 0.00 0.00 3.51
1208 1285 5.462530 TCTTTGACGAGTATTTCCAGACA 57.537 39.130 0.00 0.00 0.00 3.41
1209 1286 5.470368 TCTTTGACGAGTATTTCCAGACAG 58.530 41.667 0.00 0.00 0.00 3.51
1210 1287 5.243060 TCTTTGACGAGTATTTCCAGACAGA 59.757 40.000 0.00 0.00 0.00 3.41
1211 1288 4.703645 TGACGAGTATTTCCAGACAGAG 57.296 45.455 0.00 0.00 0.00 3.35
1212 1289 3.444034 TGACGAGTATTTCCAGACAGAGG 59.556 47.826 0.00 0.00 0.00 3.69
1213 1290 2.761208 ACGAGTATTTCCAGACAGAGGG 59.239 50.000 0.00 0.00 0.00 4.30
1214 1291 2.761208 CGAGTATTTCCAGACAGAGGGT 59.239 50.000 0.00 0.00 0.00 4.34
1216 1293 3.515901 GAGTATTTCCAGACAGAGGGTGT 59.484 47.826 0.00 0.00 44.49 4.16
1231 1308 4.463186 AGAGGGTGTATGTCTAACACTGTC 59.537 45.833 6.35 4.08 45.26 3.51
1232 1309 4.417437 AGGGTGTATGTCTAACACTGTCT 58.583 43.478 6.35 0.61 45.26 3.41
1233 1310 4.463186 AGGGTGTATGTCTAACACTGTCTC 59.537 45.833 6.35 0.00 45.26 3.36
1234 1311 4.219944 GGGTGTATGTCTAACACTGTCTCA 59.780 45.833 6.35 0.00 45.26 3.27
1235 1312 5.162075 GGTGTATGTCTAACACTGTCTCAC 58.838 45.833 6.35 0.00 45.26 3.51
1236 1313 4.852104 GTGTATGTCTAACACTGTCTCACG 59.148 45.833 0.00 0.00 43.13 4.35
1237 1314 4.517832 TGTATGTCTAACACTGTCTCACGT 59.482 41.667 0.00 0.00 0.00 4.49
1238 1315 3.349488 TGTCTAACACTGTCTCACGTG 57.651 47.619 9.94 9.94 37.18 4.49
1239 1316 2.686405 TGTCTAACACTGTCTCACGTGT 59.314 45.455 16.51 0.00 45.55 4.49
1240 1317 3.878699 TGTCTAACACTGTCTCACGTGTA 59.121 43.478 16.51 2.02 43.05 2.90
1241 1318 4.024302 TGTCTAACACTGTCTCACGTGTAG 60.024 45.833 16.51 11.65 43.05 2.74
1242 1319 4.024218 GTCTAACACTGTCTCACGTGTAGT 60.024 45.833 16.51 12.64 43.05 2.73
1243 1320 5.178252 GTCTAACACTGTCTCACGTGTAGTA 59.822 44.000 16.51 0.00 43.05 1.82
1244 1321 3.892918 ACACTGTCTCACGTGTAGTAC 57.107 47.619 16.51 9.96 42.14 2.73
1245 1322 3.474600 ACACTGTCTCACGTGTAGTACT 58.525 45.455 16.51 0.00 42.14 2.73
1246 1323 3.881688 ACACTGTCTCACGTGTAGTACTT 59.118 43.478 16.51 2.34 42.14 2.24
1250 1327 4.852138 TGTCTCACGTGTAGTACTTTGTC 58.148 43.478 16.51 0.00 0.00 3.18
1251 1328 4.336153 TGTCTCACGTGTAGTACTTTGTCA 59.664 41.667 16.51 0.00 0.00 3.58
1273 1350 5.412594 TCATTCTGTACTGATGGTTCTTTGC 59.587 40.000 3.03 0.00 0.00 3.68
1278 1355 6.048732 TGTACTGATGGTTCTTTGCTGATA 57.951 37.500 0.00 0.00 0.00 2.15
1280 1357 6.763135 TGTACTGATGGTTCTTTGCTGATATC 59.237 38.462 0.00 0.00 0.00 1.63
1282 1359 4.769688 TGATGGTTCTTTGCTGATATCGT 58.230 39.130 0.00 0.00 0.00 3.73
1283 1360 4.571984 TGATGGTTCTTTGCTGATATCGTG 59.428 41.667 0.00 0.00 0.00 4.35
1286 1363 2.293677 TCTTTGCTGATATCGTGCGT 57.706 45.000 13.43 0.00 0.00 5.24
1332 1409 1.635817 GGCCATGGTGAAGGGAGCTA 61.636 60.000 14.67 0.00 0.00 3.32
1403 1480 2.917897 AATGGCGGCCAGGAAGGAA 61.918 57.895 27.62 0.11 41.22 3.36
1413 1490 1.612442 AGGAAGGAAGTGGGCGCTA 60.612 57.895 7.64 0.00 0.00 4.26
1540 1617 2.844281 CTAAGCAAAGCAAGCGAACTC 58.156 47.619 0.00 0.00 37.01 3.01
1579 1657 6.094186 CACTAGAACATTTCTTCCCTTAAGCC 59.906 42.308 0.00 0.00 41.14 4.35
1585 1663 4.650972 TTTCTTCCCTTAAGCCTAAGCA 57.349 40.909 0.00 0.00 43.56 3.91
1651 1807 1.511305 CCACTTTCTCCTAGCGCGA 59.489 57.895 12.10 0.00 0.00 5.87
1658 1814 2.745100 TCCTAGCGCGACGTGTCT 60.745 61.111 12.10 9.98 0.00 3.41
1671 1827 1.816835 ACGTGTCTAGGAGAATTCGCA 59.183 47.619 11.46 0.00 0.00 5.10
1672 1828 2.186076 CGTGTCTAGGAGAATTCGCAC 58.814 52.381 11.46 1.35 0.00 5.34
1675 1831 2.097629 TGTCTAGGAGAATTCGCACTCG 59.902 50.000 11.46 2.93 34.40 4.18
1677 1833 3.311871 GTCTAGGAGAATTCGCACTCGTA 59.688 47.826 11.46 3.62 36.96 3.43
1678 1834 3.943381 TCTAGGAGAATTCGCACTCGTAA 59.057 43.478 11.46 0.00 34.61 3.18
1684 1840 5.000012 AGAATTCGCACTCGTAATTCTCT 58.000 39.130 0.00 0.00 42.14 3.10
1690 1846 4.082949 TCGCACTCGTAATTCTCTTTCTCA 60.083 41.667 0.00 0.00 36.96 3.27
1697 1853 8.091449 ACTCGTAATTCTCTTTCTCAATGTTCT 58.909 33.333 0.00 0.00 0.00 3.01
1816 1982 6.177610 AGAGAATTGCCCAGTTAATTAACGA 58.822 36.000 19.92 6.43 40.96 3.85
1833 1999 0.029700 CGAAAAACCGGGCGAAAACT 59.970 50.000 6.32 0.00 0.00 2.66
1887 2053 4.741928 AAGAACCAAACTCCATAACCCT 57.258 40.909 0.00 0.00 0.00 4.34
2020 2186 0.613260 CCACGGAGATGGAGGACAAA 59.387 55.000 0.00 0.00 43.02 2.83
2036 2202 3.519913 GGACAAAGGGACTGAGTATCCTT 59.480 47.826 12.22 12.22 40.86 3.36
2065 2231 2.388232 CCGCTGACGCCTTACCAAC 61.388 63.158 0.00 0.00 38.22 3.77
2338 2504 1.672030 CATCACCTGCAGACGCCAA 60.672 57.895 17.39 0.00 37.32 4.52
2339 2505 1.073025 ATCACCTGCAGACGCCAAA 59.927 52.632 17.39 0.00 37.32 3.28
2340 2506 0.537143 ATCACCTGCAGACGCCAAAA 60.537 50.000 17.39 0.00 37.32 2.44
2341 2507 1.008538 CACCTGCAGACGCCAAAAC 60.009 57.895 17.39 0.00 37.32 2.43
2342 2508 1.152963 ACCTGCAGACGCCAAAACT 60.153 52.632 17.39 0.00 37.32 2.66
2343 2509 1.166531 ACCTGCAGACGCCAAAACTC 61.167 55.000 17.39 0.00 37.32 3.01
2344 2510 1.576421 CTGCAGACGCCAAAACTCC 59.424 57.895 8.42 0.00 37.32 3.85
2345 2511 1.856265 CTGCAGACGCCAAAACTCCC 61.856 60.000 8.42 0.00 37.32 4.30
2346 2512 1.896660 GCAGACGCCAAAACTCCCA 60.897 57.895 0.00 0.00 0.00 4.37
2347 2513 1.452145 GCAGACGCCAAAACTCCCAA 61.452 55.000 0.00 0.00 0.00 4.12
2348 2514 1.247567 CAGACGCCAAAACTCCCAAT 58.752 50.000 0.00 0.00 0.00 3.16
2349 2515 2.432444 CAGACGCCAAAACTCCCAATA 58.568 47.619 0.00 0.00 0.00 1.90
2350 2516 2.161609 CAGACGCCAAAACTCCCAATAC 59.838 50.000 0.00 0.00 0.00 1.89
2351 2517 2.156098 GACGCCAAAACTCCCAATACA 58.844 47.619 0.00 0.00 0.00 2.29
2352 2518 2.159382 ACGCCAAAACTCCCAATACAG 58.841 47.619 0.00 0.00 0.00 2.74
2353 2519 1.472480 CGCCAAAACTCCCAATACAGG 59.528 52.381 0.00 0.00 0.00 4.00
2354 2520 2.525368 GCCAAAACTCCCAATACAGGT 58.475 47.619 0.00 0.00 0.00 4.00
2355 2521 2.492088 GCCAAAACTCCCAATACAGGTC 59.508 50.000 0.00 0.00 0.00 3.85
2356 2522 3.761897 CCAAAACTCCCAATACAGGTCA 58.238 45.455 0.00 0.00 0.00 4.02
2357 2523 4.344104 CCAAAACTCCCAATACAGGTCAT 58.656 43.478 0.00 0.00 0.00 3.06
2358 2524 4.158394 CCAAAACTCCCAATACAGGTCATG 59.842 45.833 0.00 0.00 0.00 3.07
2359 2525 4.927267 AAACTCCCAATACAGGTCATGA 57.073 40.909 0.00 0.00 0.00 3.07
2360 2526 4.494091 AACTCCCAATACAGGTCATGAG 57.506 45.455 0.00 0.00 0.00 2.90
2361 2527 2.774234 ACTCCCAATACAGGTCATGAGG 59.226 50.000 0.00 0.00 0.00 3.86
2362 2528 3.041211 CTCCCAATACAGGTCATGAGGA 58.959 50.000 0.00 0.00 0.00 3.71
2363 2529 3.455910 CTCCCAATACAGGTCATGAGGAA 59.544 47.826 0.00 0.00 0.00 3.36
2364 2530 3.849574 TCCCAATACAGGTCATGAGGAAA 59.150 43.478 0.00 0.00 0.00 3.13
2365 2531 3.947834 CCCAATACAGGTCATGAGGAAAC 59.052 47.826 0.00 0.00 0.00 2.78
2367 2533 4.637534 CCAATACAGGTCATGAGGAAACTG 59.362 45.833 0.00 2.84 44.43 3.16
2368 2534 2.191128 ACAGGTCATGAGGAAACTGC 57.809 50.000 0.00 0.00 44.43 4.40
2369 2535 1.081892 CAGGTCATGAGGAAACTGCG 58.918 55.000 0.00 0.00 44.43 5.18
2370 2536 0.036010 AGGTCATGAGGAAACTGCGG 60.036 55.000 0.00 0.00 44.43 5.69
2371 2537 0.036388 GGTCATGAGGAAACTGCGGA 60.036 55.000 0.00 0.00 44.43 5.54
2372 2538 1.079503 GTCATGAGGAAACTGCGGAC 58.920 55.000 0.00 0.00 44.43 4.79
2373 2539 0.036388 TCATGAGGAAACTGCGGACC 60.036 55.000 0.00 0.00 44.43 4.46
2374 2540 1.079127 ATGAGGAAACTGCGGACCG 60.079 57.895 10.29 10.29 44.43 4.79
2385 2551 4.794439 CGGACCGCGACATGAGCA 62.794 66.667 8.23 0.00 34.19 4.26
2386 2552 3.188786 GGACCGCGACATGAGCAC 61.189 66.667 8.23 7.90 34.19 4.40
2387 2553 3.545481 GACCGCGACATGAGCACG 61.545 66.667 8.23 9.41 34.19 5.34
2431 2597 4.925861 GCTGCCGGGCTGATCTCC 62.926 72.222 27.54 7.33 0.00 3.71
2432 2598 3.160047 CTGCCGGGCTGATCTCCT 61.160 66.667 21.46 0.00 0.00 3.69
2433 2599 2.688666 TGCCGGGCTGATCTCCTT 60.689 61.111 21.46 0.00 0.00 3.36
2434 2600 2.110006 GCCGGGCTGATCTCCTTC 59.890 66.667 12.87 0.00 0.00 3.46
2435 2601 2.825264 CCGGGCTGATCTCCTTCC 59.175 66.667 0.00 0.00 0.00 3.46
2436 2602 1.764054 CCGGGCTGATCTCCTTCCT 60.764 63.158 0.00 0.00 0.00 3.36
2437 2603 1.745264 CGGGCTGATCTCCTTCCTC 59.255 63.158 0.00 0.00 0.00 3.71
2438 2604 1.753368 CGGGCTGATCTCCTTCCTCC 61.753 65.000 0.00 0.00 0.00 4.30
2439 2605 0.692419 GGGCTGATCTCCTTCCTCCA 60.692 60.000 0.00 0.00 0.00 3.86
2440 2606 1.207791 GGCTGATCTCCTTCCTCCAA 58.792 55.000 0.00 0.00 0.00 3.53
2441 2607 1.134250 GGCTGATCTCCTTCCTCCAAC 60.134 57.143 0.00 0.00 0.00 3.77
2442 2608 1.134250 GCTGATCTCCTTCCTCCAACC 60.134 57.143 0.00 0.00 0.00 3.77
2443 2609 2.476199 CTGATCTCCTTCCTCCAACCT 58.524 52.381 0.00 0.00 0.00 3.50
2444 2610 2.433970 CTGATCTCCTTCCTCCAACCTC 59.566 54.545 0.00 0.00 0.00 3.85
2445 2611 1.765904 GATCTCCTTCCTCCAACCTCC 59.234 57.143 0.00 0.00 0.00 4.30
2446 2612 0.252742 TCTCCTTCCTCCAACCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
2447 2613 1.229853 TCCTTCCTCCAACCTCCCC 60.230 63.158 0.00 0.00 0.00 4.81
2448 2614 1.229984 CCTTCCTCCAACCTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
2449 2615 1.566298 CCTTCCTCCAACCTCCCCTG 61.566 65.000 0.00 0.00 0.00 4.45
2450 2616 2.203549 CTTCCTCCAACCTCCCCTGC 62.204 65.000 0.00 0.00 0.00 4.85
2451 2617 3.732849 CCTCCAACCTCCCCTGCC 61.733 72.222 0.00 0.00 0.00 4.85
2452 2618 2.612115 CTCCAACCTCCCCTGCCT 60.612 66.667 0.00 0.00 0.00 4.75
2453 2619 2.610859 TCCAACCTCCCCTGCCTC 60.611 66.667 0.00 0.00 0.00 4.70
2454 2620 3.732849 CCAACCTCCCCTGCCTCC 61.733 72.222 0.00 0.00 0.00 4.30
2455 2621 4.101448 CAACCTCCCCTGCCTCCG 62.101 72.222 0.00 0.00 0.00 4.63
2474 2640 4.241555 CGGCCCCGGATCTGGAAG 62.242 72.222 23.02 13.68 35.56 3.46
2475 2641 4.570874 GGCCCCGGATCTGGAAGC 62.571 72.222 23.02 22.05 0.00 3.86
2476 2642 3.483869 GCCCCGGATCTGGAAGCT 61.484 66.667 23.02 0.00 0.00 3.74
2477 2643 2.825264 CCCCGGATCTGGAAGCTC 59.175 66.667 23.02 0.00 0.00 4.09
2478 2644 2.812619 CCCCGGATCTGGAAGCTCC 61.813 68.421 23.02 0.00 45.67 4.70
2481 2647 2.110006 GGATCTGGAAGCTCCGCC 59.890 66.667 0.00 0.00 39.78 6.13
2482 2648 2.110006 GATCTGGAAGCTCCGCCC 59.890 66.667 0.00 0.00 40.17 6.13
2483 2649 3.468326 GATCTGGAAGCTCCGCCCC 62.468 68.421 0.00 0.00 40.17 5.80
2521 2687 2.029666 AGCTTTGCTGCTCGTCGT 59.970 55.556 0.00 0.00 39.34 4.34
2522 2688 2.171940 GCTTTGCTGCTCGTCGTG 59.828 61.111 0.00 0.00 0.00 4.35
2523 2689 2.171940 CTTTGCTGCTCGTCGTGC 59.828 61.111 12.19 12.19 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.563702 TCATATTACGCCGGGGAAAAC 58.436 47.619 27.23 0.00 0.00 2.43
5 6 0.611200 TGGATCATATTACGCCGGGG 59.389 55.000 18.33 18.33 0.00 5.73
7 8 2.972625 ACATGGATCATATTACGCCGG 58.027 47.619 0.00 0.00 0.00 6.13
8 9 3.424829 GCAACATGGATCATATTACGCCG 60.425 47.826 0.00 0.00 0.00 6.46
9 10 3.501828 TGCAACATGGATCATATTACGCC 59.498 43.478 0.00 0.00 0.00 5.68
10 11 4.747540 TGCAACATGGATCATATTACGC 57.252 40.909 0.00 0.00 0.00 4.42
11 12 5.451908 GGTTGCAACATGGATCATATTACG 58.548 41.667 29.55 0.00 0.00 3.18
12 13 5.238432 TCGGTTGCAACATGGATCATATTAC 59.762 40.000 29.55 7.21 0.00 1.89
13 14 5.238432 GTCGGTTGCAACATGGATCATATTA 59.762 40.000 29.55 1.19 0.00 0.98
14 15 4.036734 GTCGGTTGCAACATGGATCATATT 59.963 41.667 29.55 0.00 0.00 1.28
15 16 3.565482 GTCGGTTGCAACATGGATCATAT 59.435 43.478 29.55 0.00 0.00 1.78
16 17 2.942376 GTCGGTTGCAACATGGATCATA 59.058 45.455 29.55 3.22 0.00 2.15
17 18 1.745087 GTCGGTTGCAACATGGATCAT 59.255 47.619 29.55 0.00 0.00 2.45
18 19 1.164411 GTCGGTTGCAACATGGATCA 58.836 50.000 29.55 4.24 0.00 2.92
19 20 1.164411 TGTCGGTTGCAACATGGATC 58.836 50.000 29.55 16.66 0.00 3.36
20 21 1.541147 CTTGTCGGTTGCAACATGGAT 59.459 47.619 29.55 0.00 0.00 3.41
21 22 0.950836 CTTGTCGGTTGCAACATGGA 59.049 50.000 29.55 19.92 0.00 3.41
22 23 0.667993 ACTTGTCGGTTGCAACATGG 59.332 50.000 29.55 18.06 0.00 3.66
23 24 1.757574 CACTTGTCGGTTGCAACATG 58.242 50.000 29.55 20.98 0.00 3.21
24 25 0.030638 GCACTTGTCGGTTGCAACAT 59.969 50.000 29.55 4.24 0.00 2.71
25 26 1.308783 TGCACTTGTCGGTTGCAACA 61.309 50.000 29.55 8.48 32.17 3.33
26 27 0.179150 TTGCACTTGTCGGTTGCAAC 60.179 50.000 21.59 21.59 40.04 4.17
27 28 0.179150 GTTGCACTTGTCGGTTGCAA 60.179 50.000 4.17 4.17 42.24 4.08
28 29 1.308783 TGTTGCACTTGTCGGTTGCA 61.309 50.000 0.00 0.00 0.00 4.08
29 30 0.030638 ATGTTGCACTTGTCGGTTGC 59.969 50.000 0.00 0.00 0.00 4.17
30 31 2.490328 AATGTTGCACTTGTCGGTTG 57.510 45.000 0.00 0.00 0.00 3.77
31 32 2.687935 AGAAATGTTGCACTTGTCGGTT 59.312 40.909 0.00 0.00 0.00 4.44
32 33 2.290641 GAGAAATGTTGCACTTGTCGGT 59.709 45.455 0.00 0.00 0.00 4.69
33 34 2.290367 TGAGAAATGTTGCACTTGTCGG 59.710 45.455 0.00 0.00 0.00 4.79
34 35 3.607422 TGAGAAATGTTGCACTTGTCG 57.393 42.857 0.00 0.00 0.00 4.35
35 36 4.863491 ACATGAGAAATGTTGCACTTGTC 58.137 39.130 0.00 0.00 0.00 3.18
36 37 4.924305 ACATGAGAAATGTTGCACTTGT 57.076 36.364 0.00 0.00 0.00 3.16
37 38 6.207928 TGTAACATGAGAAATGTTGCACTTG 58.792 36.000 15.12 0.00 45.11 3.16
38 39 6.389830 TGTAACATGAGAAATGTTGCACTT 57.610 33.333 15.12 0.00 45.11 3.16
42 43 6.032775 CACGATTGTAACATGAGAAATGTTGC 59.967 38.462 12.72 11.83 41.73 4.17
43 44 6.524239 CCACGATTGTAACATGAGAAATGTTG 59.476 38.462 12.72 0.00 41.73 3.33
44 45 6.206634 ACCACGATTGTAACATGAGAAATGTT 59.793 34.615 0.00 8.60 43.74 2.71
45 46 5.705441 ACCACGATTGTAACATGAGAAATGT 59.295 36.000 0.00 0.00 0.00 2.71
46 47 6.128309 TGACCACGATTGTAACATGAGAAATG 60.128 38.462 0.00 0.00 0.00 2.32
47 48 5.937540 TGACCACGATTGTAACATGAGAAAT 59.062 36.000 0.00 0.00 0.00 2.17
48 49 5.301555 TGACCACGATTGTAACATGAGAAA 58.698 37.500 0.00 0.00 0.00 2.52
49 50 4.888917 TGACCACGATTGTAACATGAGAA 58.111 39.130 0.00 0.00 0.00 2.87
50 51 4.219725 TCTGACCACGATTGTAACATGAGA 59.780 41.667 0.00 0.00 0.00 3.27
51 52 4.494484 TCTGACCACGATTGTAACATGAG 58.506 43.478 0.00 0.00 0.00 2.90
52 53 4.529109 TCTGACCACGATTGTAACATGA 57.471 40.909 0.00 0.00 0.00 3.07
53 54 6.312672 TGTTATCTGACCACGATTGTAACATG 59.687 38.462 0.00 0.00 0.00 3.21
54 55 6.312918 GTGTTATCTGACCACGATTGTAACAT 59.687 38.462 0.00 0.00 0.00 2.71
55 56 5.636121 GTGTTATCTGACCACGATTGTAACA 59.364 40.000 0.00 0.00 0.00 2.41
56 57 6.091123 GTGTTATCTGACCACGATTGTAAC 57.909 41.667 0.00 0.00 0.00 2.50
65 66 3.635373 TCCCTATCGTGTTATCTGACCAC 59.365 47.826 0.00 0.00 0.00 4.16
66 67 3.635373 GTCCCTATCGTGTTATCTGACCA 59.365 47.826 0.00 0.00 0.00 4.02
67 68 3.005578 GGTCCCTATCGTGTTATCTGACC 59.994 52.174 0.00 0.00 33.69 4.02
68 69 3.635373 TGGTCCCTATCGTGTTATCTGAC 59.365 47.826 0.00 0.00 0.00 3.51
69 70 3.905968 TGGTCCCTATCGTGTTATCTGA 58.094 45.455 0.00 0.00 0.00 3.27
70 71 4.280929 TGATGGTCCCTATCGTGTTATCTG 59.719 45.833 0.00 0.00 0.00 2.90
71 72 4.480115 TGATGGTCCCTATCGTGTTATCT 58.520 43.478 0.00 0.00 0.00 1.98
72 73 4.866508 TGATGGTCCCTATCGTGTTATC 57.133 45.455 0.00 0.00 0.00 1.75
73 74 4.838423 TCATGATGGTCCCTATCGTGTTAT 59.162 41.667 9.96 0.00 40.66 1.89
74 75 4.219919 TCATGATGGTCCCTATCGTGTTA 58.780 43.478 9.96 0.00 40.66 2.41
75 76 3.038280 TCATGATGGTCCCTATCGTGTT 58.962 45.455 9.96 0.00 40.66 3.32
76 77 2.677914 TCATGATGGTCCCTATCGTGT 58.322 47.619 9.96 0.00 40.66 4.49
77 78 3.751479 TTCATGATGGTCCCTATCGTG 57.249 47.619 0.00 5.42 40.99 4.35
78 79 3.648067 ACATTCATGATGGTCCCTATCGT 59.352 43.478 0.00 0.00 40.21 3.73
79 80 4.277515 ACATTCATGATGGTCCCTATCG 57.722 45.455 0.00 0.00 40.21 2.92
80 81 6.015940 GGAAAACATTCATGATGGTCCCTATC 60.016 42.308 0.00 0.00 40.21 2.08
81 82 5.835280 GGAAAACATTCATGATGGTCCCTAT 59.165 40.000 0.00 0.00 40.21 2.57
82 83 5.044179 AGGAAAACATTCATGATGGTCCCTA 60.044 40.000 0.00 0.00 36.94 3.53
83 84 4.026052 GGAAAACATTCATGATGGTCCCT 58.974 43.478 0.00 0.00 40.21 4.20
84 85 4.026052 AGGAAAACATTCATGATGGTCCC 58.974 43.478 0.00 2.10 40.21 4.46
85 86 4.706476 TGAGGAAAACATTCATGATGGTCC 59.294 41.667 0.00 6.48 40.21 4.46
86 87 5.902613 TGAGGAAAACATTCATGATGGTC 57.097 39.130 0.00 0.00 40.21 4.02
87 88 5.539574 TGTTGAGGAAAACATTCATGATGGT 59.460 36.000 0.00 0.00 40.21 3.55
88 89 5.865552 GTGTTGAGGAAAACATTCATGATGG 59.134 40.000 0.00 0.00 41.81 3.51
89 90 6.448852 TGTGTTGAGGAAAACATTCATGATG 58.551 36.000 0.00 0.00 41.81 3.07
90 91 6.653526 TGTGTTGAGGAAAACATTCATGAT 57.346 33.333 0.00 0.00 41.81 2.45
91 92 6.272318 GTTGTGTTGAGGAAAACATTCATGA 58.728 36.000 0.00 0.00 41.81 3.07
92 93 5.173673 CGTTGTGTTGAGGAAAACATTCATG 59.826 40.000 0.00 0.00 41.81 3.07
93 94 5.163561 ACGTTGTGTTGAGGAAAACATTCAT 60.164 36.000 0.00 0.00 41.81 2.57
94 95 4.156922 ACGTTGTGTTGAGGAAAACATTCA 59.843 37.500 0.00 0.00 41.81 2.57
95 96 4.499040 CACGTTGTGTTGAGGAAAACATTC 59.501 41.667 0.00 0.00 41.81 2.67
96 97 4.156922 TCACGTTGTGTTGAGGAAAACATT 59.843 37.500 0.00 0.00 41.81 2.71
97 98 3.692101 TCACGTTGTGTTGAGGAAAACAT 59.308 39.130 0.00 0.00 41.81 2.71
98 99 3.075148 TCACGTTGTGTTGAGGAAAACA 58.925 40.909 0.00 0.00 37.71 2.83
99 100 3.126343 ACTCACGTTGTGTTGAGGAAAAC 59.874 43.478 3.79 0.00 34.79 2.43
100 101 3.340034 ACTCACGTTGTGTTGAGGAAAA 58.660 40.909 3.79 0.00 34.79 2.29
101 102 2.980568 ACTCACGTTGTGTTGAGGAAA 58.019 42.857 3.79 0.00 34.79 3.13
102 103 2.684001 ACTCACGTTGTGTTGAGGAA 57.316 45.000 3.79 0.00 34.79 3.36
103 104 3.804786 TTACTCACGTTGTGTTGAGGA 57.195 42.857 3.79 0.00 34.79 3.71
104 105 3.807622 ACATTACTCACGTTGTGTTGAGG 59.192 43.478 3.79 0.00 34.79 3.86
105 106 4.506288 TGACATTACTCACGTTGTGTTGAG 59.494 41.667 0.00 0.00 34.79 3.02
106 107 4.269123 GTGACATTACTCACGTTGTGTTGA 59.731 41.667 0.00 0.00 34.79 3.18
107 108 4.033472 TGTGACATTACTCACGTTGTGTTG 59.967 41.667 0.00 0.00 43.14 3.33
108 109 4.033587 GTGTGACATTACTCACGTTGTGTT 59.966 41.667 0.00 0.00 43.14 3.32
109 110 3.554324 GTGTGACATTACTCACGTTGTGT 59.446 43.478 0.00 0.00 43.14 3.72
110 111 3.059868 GGTGTGACATTACTCACGTTGTG 60.060 47.826 0.00 0.00 43.14 3.33
111 112 3.128349 GGTGTGACATTACTCACGTTGT 58.872 45.455 0.00 0.00 43.14 3.32
112 113 2.154963 CGGTGTGACATTACTCACGTTG 59.845 50.000 0.00 0.00 43.14 4.10
113 114 2.034939 TCGGTGTGACATTACTCACGTT 59.965 45.455 0.00 0.00 43.14 3.99
114 115 1.610038 TCGGTGTGACATTACTCACGT 59.390 47.619 0.00 0.00 43.14 4.49
115 116 2.341318 TCGGTGTGACATTACTCACG 57.659 50.000 0.00 0.00 43.14 4.35
116 117 3.845178 TCATCGGTGTGACATTACTCAC 58.155 45.455 0.00 0.00 40.98 3.51
117 118 3.676049 GCTCATCGGTGTGACATTACTCA 60.676 47.826 1.05 0.00 0.00 3.41
118 119 2.860735 GCTCATCGGTGTGACATTACTC 59.139 50.000 1.05 0.00 0.00 2.59
119 120 2.735444 CGCTCATCGGTGTGACATTACT 60.735 50.000 1.05 0.00 33.78 2.24
120 121 1.588404 CGCTCATCGGTGTGACATTAC 59.412 52.381 1.05 0.00 33.78 1.89
121 122 1.921243 CGCTCATCGGTGTGACATTA 58.079 50.000 1.05 0.00 33.78 1.90
122 123 1.361668 GCGCTCATCGGTGTGACATT 61.362 55.000 0.00 0.00 38.94 2.71
123 124 1.811266 GCGCTCATCGGTGTGACAT 60.811 57.895 0.00 0.00 38.94 3.06
124 125 2.432456 GCGCTCATCGGTGTGACA 60.432 61.111 0.00 0.00 38.94 3.58
125 126 1.361668 ATTGCGCTCATCGGTGTGAC 61.362 55.000 9.73 0.00 38.94 3.67
126 127 0.174617 TATTGCGCTCATCGGTGTGA 59.825 50.000 9.73 0.00 38.94 3.58
127 128 1.070376 CATATTGCGCTCATCGGTGTG 60.070 52.381 9.73 0.00 38.94 3.82
128 129 1.220529 CATATTGCGCTCATCGGTGT 58.779 50.000 9.73 0.00 38.94 4.16
129 130 0.514255 CCATATTGCGCTCATCGGTG 59.486 55.000 9.73 0.00 38.94 4.94
130 131 1.230635 GCCATATTGCGCTCATCGGT 61.231 55.000 9.73 0.00 38.94 4.69
131 132 0.952497 AGCCATATTGCGCTCATCGG 60.952 55.000 9.73 5.08 38.94 4.18
132 133 2.536725 AGCCATATTGCGCTCATCG 58.463 52.632 9.73 0.00 42.12 3.84
137 138 1.335810 CAACATGAGCCATATTGCGCT 59.664 47.619 9.73 0.00 38.27 5.92
138 139 1.762419 CAACATGAGCCATATTGCGC 58.238 50.000 0.00 0.00 36.02 6.09
139 140 1.762419 GCAACATGAGCCATATTGCG 58.238 50.000 13.07 0.00 42.82 4.85
141 142 3.548668 CGTTTGCAACATGAGCCATATTG 59.451 43.478 0.00 2.83 32.18 1.90
142 143 3.429272 CCGTTTGCAACATGAGCCATATT 60.429 43.478 0.00 0.00 0.00 1.28
143 144 2.099592 CCGTTTGCAACATGAGCCATAT 59.900 45.455 0.00 0.00 0.00 1.78
144 145 1.472082 CCGTTTGCAACATGAGCCATA 59.528 47.619 0.00 0.00 0.00 2.74
145 146 0.244450 CCGTTTGCAACATGAGCCAT 59.756 50.000 0.00 0.00 0.00 4.40
146 147 0.821301 TCCGTTTGCAACATGAGCCA 60.821 50.000 0.00 0.00 0.00 4.75
147 148 0.527565 ATCCGTTTGCAACATGAGCC 59.472 50.000 0.00 0.00 0.00 4.70
148 149 1.621107 CATCCGTTTGCAACATGAGC 58.379 50.000 0.00 3.56 0.00 4.26
149 150 1.811965 TCCATCCGTTTGCAACATGAG 59.188 47.619 0.00 0.00 0.00 2.90
150 151 1.902938 TCCATCCGTTTGCAACATGA 58.097 45.000 0.00 0.00 0.00 3.07
151 152 2.792196 CGATCCATCCGTTTGCAACATG 60.792 50.000 0.00 0.00 0.00 3.21
152 153 1.401552 CGATCCATCCGTTTGCAACAT 59.598 47.619 0.00 0.00 0.00 2.71
153 154 0.801872 CGATCCATCCGTTTGCAACA 59.198 50.000 0.00 0.00 0.00 3.33
154 155 0.523335 GCGATCCATCCGTTTGCAAC 60.523 55.000 0.00 0.00 0.00 4.17
155 156 1.653094 GGCGATCCATCCGTTTGCAA 61.653 55.000 0.00 0.00 0.00 4.08
156 157 2.112198 GGCGATCCATCCGTTTGCA 61.112 57.895 0.00 0.00 0.00 4.08
157 158 2.715624 GGCGATCCATCCGTTTGC 59.284 61.111 0.00 0.00 0.00 3.68
158 159 3.014036 CGGCGATCCATCCGTTTG 58.986 61.111 0.00 0.00 40.72 2.93
163 164 2.237751 CGTTCACGGCGATCCATCC 61.238 63.158 16.62 0.00 35.37 3.51
164 165 1.226859 TCGTTCACGGCGATCCATC 60.227 57.895 16.62 0.00 40.29 3.51
165 166 1.518572 GTCGTTCACGGCGATCCAT 60.519 57.895 16.62 0.00 40.59 3.41
166 167 2.126228 GTCGTTCACGGCGATCCA 60.126 61.111 16.62 0.00 40.59 3.41
180 181 1.065928 GATCTACCCACGGCAGTCG 59.934 63.158 0.00 0.00 45.88 4.18
181 182 1.065928 CGATCTACCCACGGCAGTC 59.934 63.158 0.00 0.00 0.00 3.51
182 183 2.423898 CCGATCTACCCACGGCAGT 61.424 63.158 0.00 0.00 40.19 4.40
183 184 2.125326 TCCGATCTACCCACGGCAG 61.125 63.158 0.00 0.00 45.25 4.85
184 185 2.043752 TCCGATCTACCCACGGCA 60.044 61.111 0.00 0.00 45.25 5.69
185 186 2.416260 GTCCGATCTACCCACGGC 59.584 66.667 0.00 0.00 45.25 5.68
186 187 2.719979 CGTCCGATCTACCCACGG 59.280 66.667 0.00 0.00 46.71 4.94
187 188 1.660560 AACCGTCCGATCTACCCACG 61.661 60.000 0.00 0.00 0.00 4.94
188 189 0.179119 CAACCGTCCGATCTACCCAC 60.179 60.000 0.00 0.00 0.00 4.61
189 190 0.612732 ACAACCGTCCGATCTACCCA 60.613 55.000 0.00 0.00 0.00 4.51
190 191 0.179119 CACAACCGTCCGATCTACCC 60.179 60.000 0.00 0.00 0.00 3.69
191 192 0.179119 CCACAACCGTCCGATCTACC 60.179 60.000 0.00 0.00 0.00 3.18
192 193 0.804933 GCCACAACCGTCCGATCTAC 60.805 60.000 0.00 0.00 0.00 2.59
193 194 1.514087 GCCACAACCGTCCGATCTA 59.486 57.895 0.00 0.00 0.00 1.98
194 195 2.264794 GCCACAACCGTCCGATCT 59.735 61.111 0.00 0.00 0.00 2.75
195 196 3.186047 CGCCACAACCGTCCGATC 61.186 66.667 0.00 0.00 0.00 3.69
199 200 4.025401 CTTGCGCCACAACCGTCC 62.025 66.667 4.18 0.00 33.68 4.79
200 201 2.240612 GATCTTGCGCCACAACCGTC 62.241 60.000 4.18 0.00 33.68 4.79
201 202 2.281484 ATCTTGCGCCACAACCGT 60.281 55.556 4.18 0.00 33.68 4.83
202 203 2.480555 GATCTTGCGCCACAACCG 59.519 61.111 4.18 0.00 33.68 4.44
203 204 1.523154 TTGGATCTTGCGCCACAACC 61.523 55.000 4.18 3.85 33.68 3.77
204 205 0.387239 GTTGGATCTTGCGCCACAAC 60.387 55.000 4.18 7.52 33.68 3.32
205 206 1.851021 CGTTGGATCTTGCGCCACAA 61.851 55.000 4.18 0.00 36.62 3.33
206 207 2.324330 CGTTGGATCTTGCGCCACA 61.324 57.895 4.18 0.00 33.01 4.17
207 208 2.480555 CGTTGGATCTTGCGCCAC 59.519 61.111 4.18 0.00 33.01 5.01
208 209 2.745884 CCGTTGGATCTTGCGCCA 60.746 61.111 4.18 0.00 0.00 5.69
209 210 4.179579 GCCGTTGGATCTTGCGCC 62.180 66.667 4.18 0.00 0.00 6.53
210 211 3.100862 GAGCCGTTGGATCTTGCGC 62.101 63.158 0.00 0.00 34.95 6.09
211 212 3.093278 GAGCCGTTGGATCTTGCG 58.907 61.111 0.00 0.00 34.95 4.85
216 217 1.300481 GCCTTTAGAGCCGTTGGATC 58.700 55.000 0.00 0.00 38.56 3.36
217 218 0.462047 CGCCTTTAGAGCCGTTGGAT 60.462 55.000 0.00 0.00 0.00 3.41
218 219 1.079405 CGCCTTTAGAGCCGTTGGA 60.079 57.895 0.00 0.00 0.00 3.53
219 220 2.106683 CCGCCTTTAGAGCCGTTGG 61.107 63.158 0.00 0.00 0.00 3.77
220 221 2.750888 GCCGCCTTTAGAGCCGTTG 61.751 63.158 0.00 0.00 0.00 4.10
221 222 2.436115 GCCGCCTTTAGAGCCGTT 60.436 61.111 0.00 0.00 0.00 4.44
222 223 4.814294 CGCCGCCTTTAGAGCCGT 62.814 66.667 0.00 0.00 0.00 5.68
224 225 3.462199 ATCCGCCGCCTTTAGAGCC 62.462 63.158 0.00 0.00 0.00 4.70
225 226 1.956678 GATCCGCCGCCTTTAGAGC 60.957 63.158 0.00 0.00 0.00 4.09
226 227 1.301009 GGATCCGCCGCCTTTAGAG 60.301 63.158 0.00 0.00 0.00 2.43
227 228 2.819550 GGATCCGCCGCCTTTAGA 59.180 61.111 0.00 0.00 0.00 2.10
239 240 2.056481 CTCACGTACCGGTCGGATCC 62.056 65.000 23.77 0.00 38.96 3.36
240 241 1.354506 CTCACGTACCGGTCGGATC 59.645 63.158 23.77 7.35 38.96 3.36
241 242 2.768492 GCTCACGTACCGGTCGGAT 61.768 63.158 23.77 7.34 38.96 4.18
242 243 3.434319 GCTCACGTACCGGTCGGA 61.434 66.667 23.77 17.82 38.96 4.55
243 244 4.824166 CGCTCACGTACCGGTCGG 62.824 72.222 23.77 15.21 36.43 4.79
247 248 2.546645 TTTAGGCGCTCACGTACCGG 62.547 60.000 7.64 0.00 42.83 5.28
299 300 1.340248 GAGATCCCGAATGTTAGGCGA 59.660 52.381 0.00 0.00 0.00 5.54
300 301 1.341531 AGAGATCCCGAATGTTAGGCG 59.658 52.381 0.00 0.00 0.00 5.52
304 305 7.664552 TTTAGGTAAGAGATCCCGAATGTTA 57.335 36.000 0.00 0.00 0.00 2.41
305 306 6.555463 TTTAGGTAAGAGATCCCGAATGTT 57.445 37.500 0.00 0.00 0.00 2.71
306 307 6.555463 TTTTAGGTAAGAGATCCCGAATGT 57.445 37.500 0.00 0.00 0.00 2.71
338 339 4.894784 ACGGCTTCTTTGTAAGAGATTCA 58.105 39.130 0.00 0.00 39.03 2.57
340 341 7.923414 ATTAACGGCTTCTTTGTAAGAGATT 57.077 32.000 0.00 0.00 39.03 2.40
346 347 4.378666 GCGGAATTAACGGCTTCTTTGTAA 60.379 41.667 4.47 0.00 34.19 2.41
347 348 3.125658 GCGGAATTAACGGCTTCTTTGTA 59.874 43.478 4.47 0.00 34.19 2.41
353 354 1.297378 GCGCGGAATTAACGGCTTC 60.297 57.895 8.83 0.00 34.70 3.86
394 395 4.615834 TTTTGTTCGGTGCGCGCC 62.616 61.111 30.11 30.11 0.00 6.53
395 396 3.091022 CTTTTGTTCGGTGCGCGC 61.091 61.111 27.26 27.26 0.00 6.86
396 397 3.091022 GCTTTTGTTCGGTGCGCG 61.091 61.111 0.00 0.00 0.00 6.86
431 432 5.120399 ACCTAAGATGTGTGTCACGAAAAA 58.880 37.500 0.00 0.00 37.14 1.94
447 449 4.461431 TCGAACAGATGCTACAACCTAAGA 59.539 41.667 0.00 0.00 0.00 2.10
564 581 2.264005 TTTGTATTGTCGTGGCCACT 57.736 45.000 32.28 16.67 0.00 4.00
590 607 1.092921 CGCCGGGAATGGAATTTCGA 61.093 55.000 2.18 0.00 36.07 3.71
617 634 2.877974 GCCACGACAACTTTCGCGT 61.878 57.895 5.77 0.00 43.06 6.01
626 643 4.167597 GGGGAAAAGCCACGACAA 57.832 55.556 0.00 0.00 38.95 3.18
640 657 1.380302 CCAGAACCAGAACCAGGGG 59.620 63.158 0.00 0.00 0.00 4.79
644 661 0.923358 AACCACCAGAACCAGAACCA 59.077 50.000 0.00 0.00 0.00 3.67
645 662 1.318576 CAACCACCAGAACCAGAACC 58.681 55.000 0.00 0.00 0.00 3.62
647 664 0.467290 GCCAACCACCAGAACCAGAA 60.467 55.000 0.00 0.00 0.00 3.02
649 666 1.903404 GGCCAACCACCAGAACCAG 60.903 63.158 0.00 0.00 35.26 4.00
650 667 2.197324 GGCCAACCACCAGAACCA 59.803 61.111 0.00 0.00 35.26 3.67
651 668 2.197324 TGGCCAACCACCAGAACC 59.803 61.111 0.61 0.00 42.67 3.62
656 673 2.992817 AATTCGCTGGCCAACCACCA 62.993 55.000 7.01 0.00 42.67 4.17
657 674 2.275380 AATTCGCTGGCCAACCACC 61.275 57.895 7.01 0.00 42.67 4.61
658 675 1.080569 CAATTCGCTGGCCAACCAC 60.081 57.895 7.01 0.00 42.67 4.16
678 697 0.321210 CCACGGCCATGTGTTGTAGA 60.321 55.000 2.24 0.00 38.20 2.59
835 895 1.954362 CTCTGAGAGCCACGGAAGGG 61.954 65.000 0.00 0.00 0.00 3.95
867 927 4.865365 GCCTCGTTATATAGACCATGAAGC 59.135 45.833 0.00 0.00 0.00 3.86
872 932 4.024670 GAGGGCCTCGTTATATAGACCAT 58.975 47.826 19.53 0.00 0.00 3.55
927 989 7.931407 TGTGCTCTCTTGTAAAATGTCTCTAAA 59.069 33.333 0.00 0.00 0.00 1.85
934 996 5.237815 TCGATGTGCTCTCTTGTAAAATGT 58.762 37.500 0.00 0.00 0.00 2.71
954 1024 8.568676 TTCTCTTCTCTTCTATTTTCTCTCGA 57.431 34.615 0.00 0.00 0.00 4.04
985 1055 3.455177 CTCTCCATGGGGATCAGGATATG 59.545 52.174 16.66 0.00 43.91 1.78
995 1065 0.547471 TGCAACTCTCTCCATGGGGA 60.547 55.000 15.27 15.27 42.29 4.81
1023 1100 1.221466 TTTGTGCGAGAAGGCTGACG 61.221 55.000 0.00 0.00 0.00 4.35
1032 1109 0.106708 AAGCTGACCTTTGTGCGAGA 59.893 50.000 0.00 0.00 0.00 4.04
1057 1134 7.200455 TCTAAATGCATCCCGTATATATGACG 58.800 38.462 0.00 5.30 40.02 4.35
1063 1140 8.204836 GGTTCTATCTAAATGCATCCCGTATAT 58.795 37.037 0.00 0.00 0.00 0.86
1064 1141 7.399191 AGGTTCTATCTAAATGCATCCCGTATA 59.601 37.037 0.00 0.00 0.00 1.47
1070 1147 7.573968 AACAAGGTTCTATCTAAATGCATCC 57.426 36.000 0.00 0.00 0.00 3.51
1084 1161 6.262207 AGGGAGTAGTACATAACAAGGTTCT 58.738 40.000 2.52 0.00 0.00 3.01
1085 1162 6.406737 GGAGGGAGTAGTACATAACAAGGTTC 60.407 46.154 2.52 0.00 0.00 3.62
1087 1164 4.961099 GGAGGGAGTAGTACATAACAAGGT 59.039 45.833 2.52 0.00 0.00 3.50
1088 1165 4.037684 CGGAGGGAGTAGTACATAACAAGG 59.962 50.000 2.52 0.00 0.00 3.61
1091 1168 4.202441 GACGGAGGGAGTAGTACATAACA 58.798 47.826 2.52 0.00 0.00 2.41
1092 1169 3.567585 GGACGGAGGGAGTAGTACATAAC 59.432 52.174 2.52 0.00 0.00 1.89
1093 1170 3.745480 CGGACGGAGGGAGTAGTACATAA 60.745 52.174 2.52 0.00 0.00 1.90
1095 1172 1.476471 CGGACGGAGGGAGTAGTACAT 60.476 57.143 2.52 0.00 0.00 2.29
1098 1175 0.911769 TTCGGACGGAGGGAGTAGTA 59.088 55.000 0.00 0.00 0.00 1.82
1099 1176 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
1100 1177 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
1102 1179 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1103 1180 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1105 1182 1.535437 CGAGTATTTTCGGACGGAGGG 60.535 57.143 0.00 0.00 36.95 4.30
1106 1183 1.133790 ACGAGTATTTTCGGACGGAGG 59.866 52.381 0.00 0.00 44.57 4.30
1108 1185 1.202065 CGACGAGTATTTTCGGACGGA 60.202 52.381 0.00 0.00 44.57 4.69
1109 1186 1.186030 CGACGAGTATTTTCGGACGG 58.814 55.000 0.00 0.00 44.57 4.79
1110 1187 2.163826 TCGACGAGTATTTTCGGACG 57.836 50.000 0.00 5.83 44.57 4.79
1111 1188 2.850647 CCTTCGACGAGTATTTTCGGAC 59.149 50.000 0.00 0.00 44.57 4.79
1112 1189 2.749076 TCCTTCGACGAGTATTTTCGGA 59.251 45.455 0.00 0.00 44.57 4.55
1113 1190 3.141002 TCCTTCGACGAGTATTTTCGG 57.859 47.619 0.00 0.00 44.57 4.30
1114 1191 4.796830 TCATTCCTTCGACGAGTATTTTCG 59.203 41.667 0.00 0.00 45.70 3.46
1115 1192 6.642683 TTCATTCCTTCGACGAGTATTTTC 57.357 37.500 0.00 0.00 0.00 2.29
1116 1193 8.888579 ATATTCATTCCTTCGACGAGTATTTT 57.111 30.769 0.00 0.00 0.00 1.82
1118 1195 9.790389 GATATATTCATTCCTTCGACGAGTATT 57.210 33.333 0.00 0.00 0.00 1.89
1119 1196 9.179909 AGATATATTCATTCCTTCGACGAGTAT 57.820 33.333 0.00 0.00 0.00 2.12
1120 1197 8.563123 AGATATATTCATTCCTTCGACGAGTA 57.437 34.615 0.00 0.00 0.00 2.59
1121 1198 7.455641 AGATATATTCATTCCTTCGACGAGT 57.544 36.000 0.00 0.00 0.00 4.18
1122 1199 8.884726 TCTAGATATATTCATTCCTTCGACGAG 58.115 37.037 0.00 0.00 0.00 4.18
1123 1200 8.666573 GTCTAGATATATTCATTCCTTCGACGA 58.333 37.037 0.00 0.00 0.00 4.20
1124 1201 7.636745 CGTCTAGATATATTCATTCCTTCGACG 59.363 40.741 0.00 0.00 0.00 5.12
1125 1202 8.452534 ACGTCTAGATATATTCATTCCTTCGAC 58.547 37.037 0.00 0.00 0.00 4.20
1126 1203 8.563123 ACGTCTAGATATATTCATTCCTTCGA 57.437 34.615 0.00 0.00 0.00 3.71
1178 1255 9.878667 TGGAAATACTCGTCAAAGAAATGTATA 57.121 29.630 0.00 0.00 0.00 1.47
1179 1256 8.786826 TGGAAATACTCGTCAAAGAAATGTAT 57.213 30.769 0.00 0.00 0.00 2.29
1180 1257 8.092068 TCTGGAAATACTCGTCAAAGAAATGTA 58.908 33.333 0.00 0.00 0.00 2.29
1181 1258 6.934645 TCTGGAAATACTCGTCAAAGAAATGT 59.065 34.615 0.00 0.00 0.00 2.71
1182 1259 7.095229 TGTCTGGAAATACTCGTCAAAGAAATG 60.095 37.037 0.00 0.00 0.00 2.32
1183 1260 6.934645 TGTCTGGAAATACTCGTCAAAGAAAT 59.065 34.615 0.00 0.00 0.00 2.17
1184 1261 6.285224 TGTCTGGAAATACTCGTCAAAGAAA 58.715 36.000 0.00 0.00 0.00 2.52
1185 1262 5.849510 TGTCTGGAAATACTCGTCAAAGAA 58.150 37.500 0.00 0.00 0.00 2.52
1186 1263 5.243060 TCTGTCTGGAAATACTCGTCAAAGA 59.757 40.000 0.00 0.00 0.00 2.52
1187 1264 5.470368 TCTGTCTGGAAATACTCGTCAAAG 58.530 41.667 0.00 0.00 0.00 2.77
1188 1265 5.462530 TCTGTCTGGAAATACTCGTCAAA 57.537 39.130 0.00 0.00 0.00 2.69
1189 1266 4.082190 CCTCTGTCTGGAAATACTCGTCAA 60.082 45.833 0.00 0.00 0.00 3.18
1190 1267 3.444034 CCTCTGTCTGGAAATACTCGTCA 59.556 47.826 0.00 0.00 0.00 4.35
1191 1268 3.181485 CCCTCTGTCTGGAAATACTCGTC 60.181 52.174 0.00 0.00 0.00 4.20
1192 1269 2.761208 CCCTCTGTCTGGAAATACTCGT 59.239 50.000 0.00 0.00 0.00 4.18
1193 1270 2.761208 ACCCTCTGTCTGGAAATACTCG 59.239 50.000 0.00 0.00 0.00 4.18
1194 1271 3.515901 ACACCCTCTGTCTGGAAATACTC 59.484 47.826 0.00 0.00 0.00 2.59
1195 1272 3.521727 ACACCCTCTGTCTGGAAATACT 58.478 45.455 0.00 0.00 0.00 2.12
1196 1273 3.983044 ACACCCTCTGTCTGGAAATAC 57.017 47.619 0.00 0.00 0.00 1.89
1197 1274 5.030147 ACATACACCCTCTGTCTGGAAATA 58.970 41.667 0.00 0.00 32.43 1.40
1198 1275 3.846588 ACATACACCCTCTGTCTGGAAAT 59.153 43.478 0.00 0.00 32.43 2.17
1199 1276 3.248024 ACATACACCCTCTGTCTGGAAA 58.752 45.455 0.00 0.00 32.43 3.13
1200 1277 2.832129 GACATACACCCTCTGTCTGGAA 59.168 50.000 0.00 0.00 37.04 3.53
1201 1278 2.043115 AGACATACACCCTCTGTCTGGA 59.957 50.000 3.79 0.00 45.85 3.86
1202 1279 2.461695 AGACATACACCCTCTGTCTGG 58.538 52.381 3.79 0.00 45.85 3.86
1203 1280 4.462834 TGTTAGACATACACCCTCTGTCTG 59.537 45.833 13.20 0.00 46.71 3.51
1205 1282 4.463186 AGTGTTAGACATACACCCTCTGTC 59.537 45.833 0.00 0.00 45.42 3.51
1206 1283 4.220821 CAGTGTTAGACATACACCCTCTGT 59.779 45.833 0.00 0.00 45.42 3.41
1207 1284 4.220821 ACAGTGTTAGACATACACCCTCTG 59.779 45.833 0.00 0.00 45.42 3.35
1208 1285 4.417437 ACAGTGTTAGACATACACCCTCT 58.583 43.478 0.00 0.00 45.42 3.69
1209 1286 4.463186 AGACAGTGTTAGACATACACCCTC 59.537 45.833 0.00 0.00 45.42 4.30
1210 1287 4.417437 AGACAGTGTTAGACATACACCCT 58.583 43.478 0.00 0.00 45.42 4.34
1211 1288 4.219944 TGAGACAGTGTTAGACATACACCC 59.780 45.833 0.00 0.00 45.42 4.61
1212 1289 5.162075 GTGAGACAGTGTTAGACATACACC 58.838 45.833 0.00 0.00 45.42 4.16
1213 1290 4.852104 CGTGAGACAGTGTTAGACATACAC 59.148 45.833 0.00 0.00 44.81 2.90
1214 1291 4.517832 ACGTGAGACAGTGTTAGACATACA 59.482 41.667 0.00 0.00 0.00 2.29
1216 1293 5.043189 CACGTGAGACAGTGTTAGACATA 57.957 43.478 10.90 0.00 33.97 2.29
1226 1303 4.337555 ACAAAGTACTACACGTGAGACAGT 59.662 41.667 25.01 19.57 0.00 3.55
1231 1308 6.088217 CAGAATGACAAAGTACTACACGTGAG 59.912 42.308 25.01 17.03 39.69 3.51
1232 1309 5.918576 CAGAATGACAAAGTACTACACGTGA 59.081 40.000 25.01 4.97 39.69 4.35
1233 1310 5.690409 ACAGAATGACAAAGTACTACACGTG 59.310 40.000 15.48 15.48 39.69 4.49
1234 1311 5.839621 ACAGAATGACAAAGTACTACACGT 58.160 37.500 0.00 0.00 39.69 4.49
1235 1312 7.060748 CAGTACAGAATGACAAAGTACTACACG 59.939 40.741 0.00 0.00 42.33 4.49
1236 1313 8.080417 TCAGTACAGAATGACAAAGTACTACAC 58.920 37.037 0.00 0.00 42.33 2.90
1237 1314 8.173542 TCAGTACAGAATGACAAAGTACTACA 57.826 34.615 0.00 0.00 42.33 2.74
1238 1315 9.077674 CATCAGTACAGAATGACAAAGTACTAC 57.922 37.037 0.00 0.00 42.33 2.73
1239 1316 8.251026 CCATCAGTACAGAATGACAAAGTACTA 58.749 37.037 0.00 0.00 42.33 1.82
1240 1317 7.099764 CCATCAGTACAGAATGACAAAGTACT 58.900 38.462 0.00 0.00 44.33 2.73
1241 1318 6.874134 ACCATCAGTACAGAATGACAAAGTAC 59.126 38.462 0.00 0.00 39.69 2.73
1242 1319 7.004555 ACCATCAGTACAGAATGACAAAGTA 57.995 36.000 0.00 0.00 39.69 2.24
1243 1320 5.869579 ACCATCAGTACAGAATGACAAAGT 58.130 37.500 0.00 0.00 39.69 2.66
1244 1321 6.652481 AGAACCATCAGTACAGAATGACAAAG 59.348 38.462 0.00 0.00 39.69 2.77
1245 1322 6.533730 AGAACCATCAGTACAGAATGACAAA 58.466 36.000 0.00 0.00 39.69 2.83
1246 1323 6.114187 AGAACCATCAGTACAGAATGACAA 57.886 37.500 0.00 0.00 39.69 3.18
1250 1327 5.413833 AGCAAAGAACCATCAGTACAGAATG 59.586 40.000 0.00 0.00 46.00 2.67
1251 1328 5.413833 CAGCAAAGAACCATCAGTACAGAAT 59.586 40.000 0.00 0.00 0.00 2.40
1273 1350 3.300857 CTCCTACAACGCACGATATCAG 58.699 50.000 3.12 0.00 0.00 2.90
1278 1355 1.515954 CCCTCCTACAACGCACGAT 59.484 57.895 0.00 0.00 0.00 3.73
1280 1357 2.125673 CCCCTCCTACAACGCACG 60.126 66.667 0.00 0.00 0.00 5.34
1282 1359 1.305465 TAGCCCCTCCTACAACGCA 60.305 57.895 0.00 0.00 0.00 5.24
1283 1360 1.143401 GTAGCCCCTCCTACAACGC 59.857 63.158 0.00 0.00 38.04 4.84
1286 1363 3.629220 GGAGTAGCCCCTCCTACAA 57.371 57.895 11.18 0.00 46.34 2.41
1350 1427 3.453679 AGCGGTCTTCTCCTCGGC 61.454 66.667 0.00 0.00 0.00 5.54
1476 1553 4.760047 CGCGTCCACCTCCTTGGG 62.760 72.222 0.00 0.00 41.11 4.12
1496 1573 4.012895 AGTTTGGCGCGCAAGTCG 62.013 61.111 34.42 0.00 42.12 4.18
1540 1617 3.673956 TAGTGGGCGGCCGTCAATG 62.674 63.158 33.48 0.00 0.00 2.82
1557 1634 6.388619 AGGCTTAAGGGAAGAAATGTTCTA 57.611 37.500 4.29 0.00 39.61 2.10
1579 1657 8.180267 CCTCACAATCTTCAGTTTTATGCTTAG 58.820 37.037 0.00 0.00 0.00 2.18
1585 1663 5.003804 ACGCCTCACAATCTTCAGTTTTAT 58.996 37.500 0.00 0.00 0.00 1.40
1651 1807 1.816835 TGCGAATTCTCCTAGACACGT 59.183 47.619 3.52 0.00 0.00 4.49
1658 1814 4.913335 ATTACGAGTGCGAATTCTCCTA 57.087 40.909 3.52 0.00 41.64 2.94
1671 1827 8.091449 AGAACATTGAGAAAGAGAATTACGAGT 58.909 33.333 0.00 0.00 0.00 4.18
1672 1828 8.472683 AGAACATTGAGAAAGAGAATTACGAG 57.527 34.615 0.00 0.00 0.00 4.18
1677 1833 8.915057 TCAAGAGAACATTGAGAAAGAGAATT 57.085 30.769 0.00 0.00 32.96 2.17
1684 1840 9.559732 TTCTTGTATCAAGAGAACATTGAGAAA 57.440 29.630 11.17 0.00 39.86 2.52
1757 1923 3.084039 TCGATGAGGCAAATCTTTTGCT 58.916 40.909 20.56 9.75 44.36 3.91
1816 1982 1.104630 TCAGTTTTCGCCCGGTTTTT 58.895 45.000 0.00 0.00 0.00 1.94
1833 1999 4.770010 TCCGCATGTGGTCTATATGTATCA 59.230 41.667 24.28 0.00 31.17 2.15
1887 2053 6.283544 TGTGTATTTGTCGGGTTGATAGTA 57.716 37.500 0.00 0.00 0.00 1.82
2065 2231 0.034059 AGGCAAGAAGAGTGGTGTCG 59.966 55.000 0.00 0.00 0.00 4.35
2166 2332 0.827368 GAGGTAGCTTCTCCTGGGTG 59.173 60.000 9.07 0.00 33.83 4.61
2276 2442 0.742281 CTGAGGTGACGAAGCCCATG 60.742 60.000 0.00 0.00 0.00 3.66
2338 2504 4.324563 CCTCATGACCTGTATTGGGAGTTT 60.325 45.833 0.00 0.00 0.00 2.66
2339 2505 3.200825 CCTCATGACCTGTATTGGGAGTT 59.799 47.826 0.00 0.00 0.00 3.01
2340 2506 2.774234 CCTCATGACCTGTATTGGGAGT 59.226 50.000 0.00 0.00 0.00 3.85
2341 2507 3.041211 TCCTCATGACCTGTATTGGGAG 58.959 50.000 0.00 0.00 0.00 4.30
2342 2508 3.129262 TCCTCATGACCTGTATTGGGA 57.871 47.619 0.00 0.00 0.00 4.37
2343 2509 3.931907 TTCCTCATGACCTGTATTGGG 57.068 47.619 0.00 0.00 0.00 4.12
2344 2510 4.637534 CAGTTTCCTCATGACCTGTATTGG 59.362 45.833 0.00 0.00 0.00 3.16
2345 2511 4.095483 GCAGTTTCCTCATGACCTGTATTG 59.905 45.833 0.00 0.00 0.00 1.90
2346 2512 4.265073 GCAGTTTCCTCATGACCTGTATT 58.735 43.478 0.00 0.00 0.00 1.89
2347 2513 3.679917 CGCAGTTTCCTCATGACCTGTAT 60.680 47.826 0.00 0.00 0.00 2.29
2348 2514 2.353704 CGCAGTTTCCTCATGACCTGTA 60.354 50.000 0.00 0.00 0.00 2.74
2349 2515 1.609061 CGCAGTTTCCTCATGACCTGT 60.609 52.381 0.00 0.00 0.00 4.00
2350 2516 1.081892 CGCAGTTTCCTCATGACCTG 58.918 55.000 0.00 0.00 0.00 4.00
2351 2517 0.036010 CCGCAGTTTCCTCATGACCT 60.036 55.000 0.00 0.00 0.00 3.85
2352 2518 0.036388 TCCGCAGTTTCCTCATGACC 60.036 55.000 0.00 0.00 0.00 4.02
2353 2519 1.079503 GTCCGCAGTTTCCTCATGAC 58.920 55.000 0.00 0.00 0.00 3.06
2354 2520 0.036388 GGTCCGCAGTTTCCTCATGA 60.036 55.000 0.00 0.00 0.00 3.07
2355 2521 1.361668 CGGTCCGCAGTTTCCTCATG 61.362 60.000 0.00 0.00 0.00 3.07
2356 2522 1.079127 CGGTCCGCAGTTTCCTCAT 60.079 57.895 0.00 0.00 0.00 2.90
2357 2523 2.342279 CGGTCCGCAGTTTCCTCA 59.658 61.111 0.00 0.00 0.00 3.86
2368 2534 4.794439 TGCTCATGTCGCGGTCCG 62.794 66.667 6.99 6.99 38.61 4.79
2369 2535 3.188786 GTGCTCATGTCGCGGTCC 61.189 66.667 6.13 0.00 0.00 4.46
2370 2536 3.545481 CGTGCTCATGTCGCGGTC 61.545 66.667 6.13 0.00 34.22 4.79
2414 2580 4.925861 GGAGATCAGCCCGGCAGC 62.926 72.222 13.15 0.00 0.00 5.25
2415 2581 2.657102 GAAGGAGATCAGCCCGGCAG 62.657 65.000 13.15 3.23 0.00 4.85
2416 2582 2.688666 AAGGAGATCAGCCCGGCA 60.689 61.111 13.15 0.00 0.00 5.69
2417 2583 2.110006 GAAGGAGATCAGCCCGGC 59.890 66.667 0.00 0.00 0.00 6.13
2418 2584 1.753368 GAGGAAGGAGATCAGCCCGG 61.753 65.000 0.00 0.00 0.00 5.73
2419 2585 1.745264 GAGGAAGGAGATCAGCCCG 59.255 63.158 0.00 0.00 0.00 6.13
2420 2586 0.692419 TGGAGGAAGGAGATCAGCCC 60.692 60.000 0.00 0.00 0.00 5.19
2421 2587 1.134250 GTTGGAGGAAGGAGATCAGCC 60.134 57.143 0.00 0.00 0.00 4.85
2422 2588 1.134250 GGTTGGAGGAAGGAGATCAGC 60.134 57.143 0.00 0.00 0.00 4.26
2423 2589 2.433970 GAGGTTGGAGGAAGGAGATCAG 59.566 54.545 0.00 0.00 0.00 2.90
2424 2590 2.472029 GAGGTTGGAGGAAGGAGATCA 58.528 52.381 0.00 0.00 0.00 2.92
2425 2591 1.765904 GGAGGTTGGAGGAAGGAGATC 59.234 57.143 0.00 0.00 0.00 2.75
2426 2592 1.626631 GGGAGGTTGGAGGAAGGAGAT 60.627 57.143 0.00 0.00 0.00 2.75
2427 2593 0.252742 GGGAGGTTGGAGGAAGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
2428 2594 1.275421 GGGGAGGTTGGAGGAAGGAG 61.275 65.000 0.00 0.00 0.00 3.69
2429 2595 1.229853 GGGGAGGTTGGAGGAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
2430 2596 1.229984 AGGGGAGGTTGGAGGAAGG 60.230 63.158 0.00 0.00 0.00 3.46
2431 2597 1.994463 CAGGGGAGGTTGGAGGAAG 59.006 63.158 0.00 0.00 0.00 3.46
2432 2598 2.231380 GCAGGGGAGGTTGGAGGAA 61.231 63.158 0.00 0.00 0.00 3.36
2433 2599 2.610859 GCAGGGGAGGTTGGAGGA 60.611 66.667 0.00 0.00 0.00 3.71
2434 2600 3.732849 GGCAGGGGAGGTTGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
2435 2601 2.612115 AGGCAGGGGAGGTTGGAG 60.612 66.667 0.00 0.00 0.00 3.86
2436 2602 2.610859 GAGGCAGGGGAGGTTGGA 60.611 66.667 0.00 0.00 0.00 3.53
2437 2603 3.732849 GGAGGCAGGGGAGGTTGG 61.733 72.222 0.00 0.00 0.00 3.77
2438 2604 4.101448 CGGAGGCAGGGGAGGTTG 62.101 72.222 0.00 0.00 0.00 3.77
2457 2623 4.241555 CTTCCAGATCCGGGGCCG 62.242 72.222 0.00 0.00 39.44 6.13
2458 2624 4.570874 GCTTCCAGATCCGGGGCC 62.571 72.222 0.00 0.00 0.00 5.80
2459 2625 3.468326 GAGCTTCCAGATCCGGGGC 62.468 68.421 0.00 0.75 0.00 5.80
2460 2626 2.812619 GGAGCTTCCAGATCCGGGG 61.813 68.421 0.00 0.00 41.38 5.73
2461 2627 2.825264 GGAGCTTCCAGATCCGGG 59.175 66.667 0.00 0.00 41.38 5.73
2505 2671 2.171940 CACGACGAGCAGCAAAGC 59.828 61.111 0.00 0.00 0.00 3.51
2506 2672 2.171940 GCACGACGAGCAGCAAAG 59.828 61.111 12.54 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.