Multiple sequence alignment - TraesCS3B01G427300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G427300 chr3B 100.000 7827 0 0 1 7827 666440927 666448753 0.000000e+00 14454.0
1 TraesCS3B01G427300 chr3D 92.721 3558 165 35 1735 5244 504728920 504732431 0.000000e+00 5049.0
2 TraesCS3B01G427300 chr3D 95.159 1797 56 13 5441 7232 504732488 504734258 0.000000e+00 2808.0
3 TraesCS3B01G427300 chr3D 85.559 1288 79 53 487 1738 504727669 504728885 0.000000e+00 1249.0
4 TraesCS3B01G427300 chr3D 93.838 568 24 5 7264 7826 504737662 504738223 0.000000e+00 845.0
5 TraesCS3B01G427300 chr3D 97.573 412 9 1 1 412 504727216 504727626 0.000000e+00 704.0
6 TraesCS3B01G427300 chr3A 90.745 2323 132 25 5532 7827 642921647 642923913 0.000000e+00 3022.0
7 TraesCS3B01G427300 chr3A 89.358 2180 154 38 2326 4473 642918273 642920406 0.000000e+00 2669.0
8 TraesCS3B01G427300 chr3A 94.467 723 17 12 575 1289 642916518 642917225 0.000000e+00 1092.0
9 TraesCS3B01G427300 chr3A 96.473 567 16 3 1735 2298 642917629 642918194 0.000000e+00 933.0
10 TraesCS3B01G427300 chr3A 94.664 431 14 8 1 426 642916009 642916435 0.000000e+00 660.0
11 TraesCS3B01G427300 chr3A 83.473 714 72 24 4566 5244 642920437 642921139 2.400000e-174 623.0
12 TraesCS3B01G427300 chr3A 91.892 222 12 6 1522 1738 642917374 642917594 9.870000e-79 305.0
13 TraesCS3B01G427300 chr3A 83.146 89 11 3 4483 4567 674061825 674061737 2.340000e-10 78.7
14 TraesCS3B01G427300 chr3A 93.333 45 3 0 4526 4570 523744970 523744926 5.070000e-07 67.6
15 TraesCS3B01G427300 chr2D 95.858 169 7 0 5266 5434 32474302 32474470 2.780000e-69 274.0
16 TraesCS3B01G427300 chr2D 95.833 168 7 0 5268 5435 194458617 194458784 1.000000e-68 272.0
17 TraesCS3B01G427300 chr2D 93.750 48 3 0 4526 4573 378756826 378756779 1.090000e-08 73.1
18 TraesCS3B01G427300 chr1D 95.349 172 7 1 5268 5438 365727165 365727336 1.000000e-68 272.0
19 TraesCS3B01G427300 chr1B 95.349 172 6 2 5268 5438 378942656 378942826 1.000000e-68 272.0
20 TraesCS3B01G427300 chr1B 94.253 174 6 4 5268 5439 639429465 639429636 6.020000e-66 263.0
21 TraesCS3B01G427300 chr6D 94.318 176 10 0 5262 5437 392278571 392278746 3.600000e-68 270.0
22 TraesCS3B01G427300 chr6D 95.266 169 7 1 5265 5432 455575108 455574940 4.660000e-67 267.0
23 TraesCS3B01G427300 chr6D 95.122 41 2 0 4526 4566 341650611 341650571 1.820000e-06 65.8
24 TraesCS3B01G427300 chr4A 94.318 176 8 2 5266 5440 657070189 657070363 1.290000e-67 268.0
25 TraesCS3B01G427300 chr4A 83.471 121 18 2 5901 6020 6635061 6634942 2.310000e-20 111.0
26 TraesCS3B01G427300 chr4A 88.136 59 7 0 4694 4752 6635994 6635936 3.920000e-08 71.3
27 TraesCS3B01G427300 chr5D 95.238 168 7 1 5265 5432 66671951 66671785 1.670000e-66 265.0
28 TraesCS3B01G427300 chr5D 90.476 42 4 0 4526 4567 439536381 439536422 1.000000e-03 56.5
29 TraesCS3B01G427300 chr4D 83.471 121 18 2 5901 6020 462744652 462744533 2.310000e-20 111.0
30 TraesCS3B01G427300 chr4D 88.136 59 7 0 4694 4752 462745682 462745624 3.920000e-08 71.3
31 TraesCS3B01G427300 chr4B 84.821 112 15 2 5901 6011 578227121 578227231 2.310000e-20 111.0
32 TraesCS3B01G427300 chr4B 86.441 59 8 0 4694 4752 578225898 578225956 1.820000e-06 65.8
33 TraesCS3B01G427300 chr5A 89.394 66 6 1 4505 4570 703378669 703378605 1.810000e-11 82.4
34 TraesCS3B01G427300 chr5A 89.583 48 5 0 4523 4570 703316666 703316619 2.360000e-05 62.1
35 TraesCS3B01G427300 chr6B 92.683 41 3 0 4526 4566 516080226 516080186 8.480000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G427300 chr3B 666440927 666448753 7826 False 14454.000000 14454 100.000000 1 7827 1 chr3B.!!$F1 7826
1 TraesCS3B01G427300 chr3D 504727216 504738223 11007 False 2131.000000 5049 92.970000 1 7826 5 chr3D.!!$F1 7825
2 TraesCS3B01G427300 chr3A 642916009 642923913 7904 False 1329.142857 3022 91.581714 1 7827 7 chr3A.!!$F1 7826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 850 0.040499 ACCTCCGCTTCTCCTTCTCT 59.960 55.0 0.00 0.0 0.00 3.10 F
1317 1364 0.109132 GCTAGCACCGCAAGCAAAAT 60.109 50.0 10.63 0.0 0.00 1.82 F
2567 2724 0.679002 TGGCTTCTTGATCTGCTGCC 60.679 55.0 0.00 9.3 39.33 4.85 F
2937 3094 0.839946 ACTTCCTTGGCGGCATATCT 59.160 50.0 14.32 0.0 0.00 1.98 F
3402 3562 0.968901 TACGGAAGGATGACACGGCT 60.969 55.0 0.00 0.0 0.00 5.52 F
4776 4976 0.803768 CATCTCTGCGAAGGTCGGTG 60.804 60.0 0.00 0.0 40.84 4.94 F
5504 6174 0.039035 GTCCAAGGCCAACCCATACA 59.961 55.0 5.01 0.0 36.11 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2492 2649 0.178891 AGGCCAAGACCCAAGAGAGA 60.179 55.000 5.01 0.0 0.00 3.10 R
3263 3423 1.071471 CTCTGTTGCTCCGGTGGTT 59.929 57.895 0.00 0.0 0.00 3.67 R
4169 4350 0.534203 GTGTGGAGTCGAAAAGGCCA 60.534 55.000 5.01 0.0 0.00 5.36 R
4758 4958 1.251527 ACACCGACCTTCGCAGAGAT 61.252 55.000 0.00 0.0 38.82 2.75 R
5092 5308 0.984230 TGAAGGTGCCCAAGTAGAGG 59.016 55.000 0.00 0.0 0.00 3.69 R
5954 6634 2.221299 TGACAGCGTTAAGGCCCCT 61.221 57.895 16.15 0.0 0.00 4.79 R
7142 7826 0.395311 CCCTCAATGCAGTGCCATCT 60.395 55.000 13.72 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
350 353 2.390938 TCGTCGCTCACAGTTAACAAG 58.609 47.619 8.61 2.39 0.00 3.16
401 406 6.573434 TCATATCATTATCATCAGGCGTACC 58.427 40.000 0.00 0.00 0.00 3.34
403 408 4.521130 TCATTATCATCAGGCGTACCTC 57.479 45.455 0.00 0.00 46.34 3.85
405 410 2.375014 TATCATCAGGCGTACCTCCA 57.625 50.000 2.14 0.00 46.34 3.86
419 428 5.009811 GCGTACCTCCATGTCTAATTAGTCT 59.990 44.000 12.19 0.00 0.00 3.24
420 429 6.439599 CGTACCTCCATGTCTAATTAGTCTG 58.560 44.000 12.19 8.14 0.00 3.51
426 435 6.888105 TCCATGTCTAATTAGTCTGCAATGA 58.112 36.000 12.19 6.26 0.00 2.57
428 437 7.994911 TCCATGTCTAATTAGTCTGCAATGAAT 59.005 33.333 12.19 0.00 0.00 2.57
429 438 8.074370 CCATGTCTAATTAGTCTGCAATGAATG 58.926 37.037 12.19 4.49 0.00 2.67
431 440 8.201554 TGTCTAATTAGTCTGCAATGAATGTC 57.798 34.615 12.19 0.00 0.00 3.06
432 441 7.280876 TGTCTAATTAGTCTGCAATGAATGTCC 59.719 37.037 12.19 0.00 0.00 4.02
434 443 6.690194 AATTAGTCTGCAATGAATGTCCTC 57.310 37.500 0.00 0.00 0.00 3.71
436 445 1.063174 GTCTGCAATGAATGTCCTCGC 59.937 52.381 0.00 0.00 0.00 5.03
439 448 2.543012 CTGCAATGAATGTCCTCGCTAG 59.457 50.000 0.00 0.00 0.00 3.42
440 449 1.262683 GCAATGAATGTCCTCGCTAGC 59.737 52.381 4.06 4.06 0.00 3.42
443 452 3.932545 ATGAATGTCCTCGCTAGCTAG 57.067 47.619 16.84 16.84 0.00 3.42
444 453 1.338337 TGAATGTCCTCGCTAGCTAGC 59.662 52.381 31.88 31.88 45.62 3.42
451 460 0.110419 CTCGCTAGCTAGCTACGCTG 60.110 60.000 36.02 22.75 46.85 5.18
454 463 1.068885 CGCTAGCTAGCTACGCTGATT 60.069 52.381 36.02 8.13 46.85 2.57
455 464 2.323959 GCTAGCTAGCTACGCTGATTG 58.676 52.381 33.71 15.21 45.62 2.67
456 465 2.287909 GCTAGCTAGCTACGCTGATTGT 60.288 50.000 33.71 4.88 45.62 2.71
457 466 3.058155 GCTAGCTAGCTACGCTGATTGTA 60.058 47.826 33.71 6.99 45.62 2.41
458 467 4.380023 GCTAGCTAGCTACGCTGATTGTAT 60.380 45.833 33.71 4.35 45.62 2.29
459 468 5.163744 GCTAGCTAGCTACGCTGATTGTATA 60.164 44.000 33.71 6.46 45.62 1.47
460 469 5.906113 AGCTAGCTACGCTGATTGTATAT 57.094 39.130 17.69 0.00 40.10 0.86
461 470 7.254829 GCTAGCTAGCTACGCTGATTGTATATA 60.255 40.741 33.71 5.62 45.62 0.86
462 471 6.787225 AGCTAGCTACGCTGATTGTATATAC 58.213 40.000 17.69 5.89 40.10 1.47
463 472 6.374613 AGCTAGCTACGCTGATTGTATATACA 59.625 38.462 17.69 11.62 40.10 2.29
464 473 7.067615 AGCTAGCTACGCTGATTGTATATACAT 59.932 37.037 17.69 6.91 40.10 2.29
465 474 7.377397 GCTAGCTACGCTGATTGTATATACATC 59.623 40.741 16.16 14.73 40.10 3.06
466 475 7.397892 AGCTACGCTGATTGTATATACATCT 57.602 36.000 16.16 7.22 37.57 2.90
467 476 7.254137 AGCTACGCTGATTGTATATACATCTG 58.746 38.462 16.16 17.20 37.57 2.90
468 477 7.030165 GCTACGCTGATTGTATATACATCTGT 58.970 38.462 16.16 15.04 35.89 3.41
469 478 8.182227 GCTACGCTGATTGTATATACATCTGTA 58.818 37.037 16.16 15.27 35.89 2.74
472 481 9.929180 ACGCTGATTGTATATACATCTGTATTT 57.071 29.630 16.16 3.80 41.18 1.40
503 512 9.516314 CAGAAAGAAGATTATACATGTGTACGA 57.484 33.333 9.11 0.00 32.72 3.43
504 513 9.737427 AGAAAGAAGATTATACATGTGTACGAG 57.263 33.333 9.11 0.00 32.72 4.18
505 514 9.517609 GAAAGAAGATTATACATGTGTACGAGT 57.482 33.333 9.11 0.00 32.72 4.18
577 586 8.314021 CCACCTTATGATAGCATATTCACACTA 58.686 37.037 0.71 0.00 36.89 2.74
579 588 9.094578 ACCTTATGATAGCATATTCACACTACT 57.905 33.333 0.71 0.00 36.89 2.57
580 589 9.363763 CCTTATGATAGCATATTCACACTACTG 57.636 37.037 0.71 0.00 36.89 2.74
721 736 3.033184 CACGCTTGCTTGCTTCCA 58.967 55.556 0.00 0.00 0.00 3.53
771 786 2.036572 TTTTAGGCGGGGGCAAGG 59.963 61.111 0.00 0.00 0.00 3.61
835 850 0.040499 ACCTCCGCTTCTCCTTCTCT 59.960 55.000 0.00 0.00 0.00 3.10
938 955 5.124776 TGCTTCTCTCTCTAGTCTTGTTAGC 59.875 44.000 0.00 0.00 0.00 3.09
939 956 5.729454 GCTTCTCTCTCTAGTCTTGTTAGCG 60.729 48.000 0.00 0.00 0.00 4.26
940 957 4.193090 TCTCTCTCTAGTCTTGTTAGCGG 58.807 47.826 0.00 0.00 0.00 5.52
941 958 3.280295 TCTCTCTAGTCTTGTTAGCGGG 58.720 50.000 0.00 0.00 0.00 6.13
942 959 3.054582 TCTCTCTAGTCTTGTTAGCGGGA 60.055 47.826 0.00 0.00 0.00 5.14
948 965 1.135333 GTCTTGTTAGCGGGAGAGAGG 59.865 57.143 0.00 0.00 0.00 3.69
967 984 2.792370 AGGGAGAGAGATTAGCTGGGTA 59.208 50.000 0.00 0.00 0.00 3.69
976 993 4.104831 AGATTAGCTGGGTAGGTCTTGTT 58.895 43.478 0.00 0.00 35.90 2.83
977 994 5.278061 AGATTAGCTGGGTAGGTCTTGTTA 58.722 41.667 0.00 0.00 35.90 2.41
978 995 5.364157 AGATTAGCTGGGTAGGTCTTGTTAG 59.636 44.000 0.00 0.00 35.90 2.34
1242 1263 2.999355 CAGCCTCTCTTTGTTCTGCTAC 59.001 50.000 0.00 0.00 0.00 3.58
1243 1264 2.903135 AGCCTCTCTTTGTTCTGCTACT 59.097 45.455 0.00 0.00 0.00 2.57
1244 1265 4.081972 CAGCCTCTCTTTGTTCTGCTACTA 60.082 45.833 0.00 0.00 0.00 1.82
1245 1266 4.159506 AGCCTCTCTTTGTTCTGCTACTAG 59.840 45.833 0.00 0.00 0.00 2.57
1246 1267 4.429108 CCTCTCTTTGTTCTGCTACTAGC 58.571 47.826 0.61 0.61 42.82 3.42
1247 1268 4.159506 CCTCTCTTTGTTCTGCTACTAGCT 59.840 45.833 9.49 0.00 42.97 3.32
1248 1269 5.358442 CCTCTCTTTGTTCTGCTACTAGCTA 59.642 44.000 9.49 0.00 42.97 3.32
1249 1270 6.040391 CCTCTCTTTGTTCTGCTACTAGCTAT 59.960 42.308 9.49 0.00 42.97 2.97
1250 1271 7.229707 CCTCTCTTTGTTCTGCTACTAGCTATA 59.770 40.741 9.49 0.00 42.97 1.31
1295 1316 2.358957 CACTGAGGCGAAATGAATCCA 58.641 47.619 0.00 0.00 0.00 3.41
1307 1354 0.179048 TGAATCCATGGCTAGCACCG 60.179 55.000 18.24 3.17 0.00 4.94
1317 1364 0.109132 GCTAGCACCGCAAGCAAAAT 60.109 50.000 10.63 0.00 0.00 1.82
1420 1473 9.322773 GAATCACAGAGTTTAATCTCATCATGA 57.677 33.333 14.47 0.00 36.97 3.07
1435 1488 5.490159 TCATCATGAGTATTGTCACTTGCA 58.510 37.500 0.09 0.00 0.00 4.08
1439 1492 7.218228 TCATGAGTATTGTCACTTGCAAATT 57.782 32.000 0.00 0.00 0.00 1.82
1440 1493 7.660112 TCATGAGTATTGTCACTTGCAAATTT 58.340 30.769 0.00 0.00 0.00 1.82
1481 1534 6.757897 ATTTTTCATGAGAGTTTATCGGCA 57.242 33.333 0.00 0.00 0.00 5.69
1482 1535 6.567687 TTTTTCATGAGAGTTTATCGGCAA 57.432 33.333 0.00 0.00 0.00 4.52
1483 1536 6.757897 TTTTCATGAGAGTTTATCGGCAAT 57.242 33.333 0.00 0.00 0.00 3.56
1491 1544 4.935808 AGAGTTTATCGGCAATTTTCGTCT 59.064 37.500 0.00 0.00 0.00 4.18
1530 1583 5.133383 TGTATAGTAGCTGTTGTAGGGGA 57.867 43.478 0.00 0.00 0.00 4.81
1532 1585 2.921834 AGTAGCTGTTGTAGGGGAGA 57.078 50.000 0.00 0.00 0.00 3.71
1534 1587 2.043252 AGTAGCTGTTGTAGGGGAGAGT 59.957 50.000 0.00 0.00 0.00 3.24
1535 1588 2.921834 AGCTGTTGTAGGGGAGAGTA 57.078 50.000 0.00 0.00 0.00 2.59
1553 1606 7.203910 GGAGAGTACTAGTACATCCAAATGTG 58.796 42.308 32.34 0.00 45.72 3.21
1730 1786 1.671328 GAAGCCGGCCAAGACTTAATC 59.329 52.381 26.15 2.31 0.00 1.75
1733 1789 1.287425 CCGGCCAAGACTTAATCGTC 58.713 55.000 2.24 0.00 0.00 4.20
1748 1842 9.472361 GACTTAATCGTCCATAGTTAGCAATTA 57.528 33.333 0.00 0.00 0.00 1.40
1767 1861 7.757624 AGCAATTAATTAACAATGTTACCGGTG 59.242 33.333 19.93 0.64 0.00 4.94
1779 1873 8.591072 ACAATGTTACCGGTGCTAGTTATATAT 58.409 33.333 19.93 0.00 0.00 0.86
1825 1919 2.288518 TGCCGAACTGCGTGCATATATA 60.289 45.455 0.00 0.00 39.87 0.86
1959 2053 7.772292 ACAAATAGAATGAAGCTAGATCTTGCA 59.228 33.333 27.14 10.48 33.84 4.08
1983 2077 7.443879 GCAACATTTCTTAATTTTTCCAAGGGA 59.556 33.333 0.00 0.00 0.00 4.20
1987 2081 7.669089 TTTCTTAATTTTTCCAAGGGAGTGT 57.331 32.000 0.00 0.00 31.21 3.55
2080 2175 1.022982 AAAGGGCGCCGCTTTAGTAC 61.023 55.000 29.85 12.24 43.12 2.73
2117 2212 2.503331 CAACAGGGTGCACTCATGTAA 58.497 47.619 21.13 0.00 0.00 2.41
2127 2222 5.277683 GGTGCACTCATGTAAGCATATCTTG 60.278 44.000 17.98 0.00 39.43 3.02
2128 2223 5.525012 GTGCACTCATGTAAGCATATCTTGA 59.475 40.000 10.32 0.00 39.43 3.02
2129 2224 5.525012 TGCACTCATGTAAGCATATCTTGAC 59.475 40.000 4.96 0.00 36.25 3.18
2131 2226 6.204301 GCACTCATGTAAGCATATCTTGACAT 59.796 38.462 0.00 0.00 36.25 3.06
2132 2227 7.573627 CACTCATGTAAGCATATCTTGACATG 58.426 38.462 6.49 6.49 41.57 3.21
2143 2239 3.320610 TCTTGACATGGTTTTTGGGGA 57.679 42.857 0.00 0.00 0.00 4.81
2298 2394 5.163237 TGTGTGGAAAAAGCTTCCTACTACT 60.163 40.000 0.00 0.00 39.31 2.57
2299 2395 6.042322 TGTGTGGAAAAAGCTTCCTACTACTA 59.958 38.462 0.00 0.00 39.31 1.82
2300 2396 6.368243 GTGTGGAAAAAGCTTCCTACTACTAC 59.632 42.308 0.00 0.00 39.31 2.73
2301 2397 6.269307 TGTGGAAAAAGCTTCCTACTACTACT 59.731 38.462 0.00 0.00 39.31 2.57
2303 2399 7.758980 GTGGAAAAAGCTTCCTACTACTACTAC 59.241 40.741 0.00 0.00 39.31 2.73
2307 2403 7.806409 AAAGCTTCCTACTACTACTACTAGC 57.194 40.000 0.00 0.00 0.00 3.42
2308 2404 6.497624 AGCTTCCTACTACTACTACTAGCA 57.502 41.667 0.00 0.00 0.00 3.49
2309 2405 6.290605 AGCTTCCTACTACTACTACTAGCAC 58.709 44.000 0.00 0.00 0.00 4.40
2310 2406 6.054295 GCTTCCTACTACTACTACTAGCACA 58.946 44.000 0.00 0.00 0.00 4.57
2311 2407 6.203338 GCTTCCTACTACTACTACTAGCACAG 59.797 46.154 0.00 0.00 0.00 3.66
2312 2408 6.805016 TCCTACTACTACTACTAGCACAGT 57.195 41.667 0.00 0.00 41.62 3.55
2313 2409 7.192852 TCCTACTACTACTACTAGCACAGTT 57.807 40.000 0.00 0.00 38.80 3.16
2314 2410 7.271511 TCCTACTACTACTACTAGCACAGTTC 58.728 42.308 0.00 0.00 38.80 3.01
2372 2519 5.412904 CACAGTAGTCTCACACTCTGACATA 59.587 44.000 0.00 0.00 36.43 2.29
2373 2520 5.645929 ACAGTAGTCTCACACTCTGACATAG 59.354 44.000 0.00 0.00 36.43 2.23
2374 2521 5.645929 CAGTAGTCTCACACTCTGACATAGT 59.354 44.000 0.00 0.00 36.43 2.12
2492 2649 4.104738 TCCTCAAGTCTCCAAACTCCAAAT 59.895 41.667 0.00 0.00 0.00 2.32
2567 2724 0.679002 TGGCTTCTTGATCTGCTGCC 60.679 55.000 0.00 9.30 39.33 4.85
2589 2746 1.451936 CCTTTCCCGGCCTATCCAG 59.548 63.158 0.00 0.00 34.01 3.86
2655 2812 3.994392 TGTTGCTTTTAGGTAGCTTCGAG 59.006 43.478 0.00 0.00 39.38 4.04
2937 3094 0.839946 ACTTCCTTGGCGGCATATCT 59.160 50.000 14.32 0.00 0.00 1.98
2973 3130 2.596631 CACCAGCACAAGCAGCCT 60.597 61.111 0.00 0.00 45.49 4.58
3261 3421 4.738998 CCATCCCCGGCACAAGCA 62.739 66.667 0.00 0.00 44.61 3.91
3262 3422 3.443045 CATCCCCGGCACAAGCAC 61.443 66.667 0.00 0.00 44.61 4.40
3263 3423 3.965258 ATCCCCGGCACAAGCACA 61.965 61.111 0.00 0.00 44.61 4.57
3264 3424 3.505790 ATCCCCGGCACAAGCACAA 62.506 57.895 0.00 0.00 44.61 3.33
3276 3436 2.902423 AAGCACAACCACCGGAGCAA 62.902 55.000 9.46 0.00 0.00 3.91
3285 3445 4.020617 CCGGAGCAACAGAGGGCA 62.021 66.667 0.00 0.00 0.00 5.36
3288 3448 1.078567 GGAGCAACAGAGGGCAGAG 60.079 63.158 0.00 0.00 0.00 3.35
3384 3544 1.448893 GCCGGAGTTGGCGATTGTA 60.449 57.895 5.05 0.00 46.75 2.41
3402 3562 0.968901 TACGGAAGGATGACACGGCT 60.969 55.000 0.00 0.00 0.00 5.52
3432 3592 4.752879 GCTGGTTCTGGCGCCGTA 62.753 66.667 23.90 9.57 0.00 4.02
3504 3667 1.587043 CTCCAGCGTCGAGGAAGACA 61.587 60.000 9.75 0.00 40.98 3.41
3537 3700 1.583054 GGCAGCGGACTTCGATTTAT 58.417 50.000 0.00 0.00 42.43 1.40
3562 3725 4.077108 TGGCGTGACCAGGTATATAGTAG 58.923 47.826 0.00 0.00 46.36 2.57
3563 3726 4.077822 GGCGTGACCAGGTATATAGTAGT 58.922 47.826 0.00 0.00 38.86 2.73
3564 3727 5.221904 TGGCGTGACCAGGTATATAGTAGTA 60.222 44.000 0.00 0.00 46.36 1.82
3567 3730 6.128336 GCGTGACCAGGTATATAGTAGTAGTG 60.128 46.154 0.00 0.00 0.00 2.74
3568 3731 6.933521 CGTGACCAGGTATATAGTAGTAGTGT 59.066 42.308 0.00 0.00 0.00 3.55
3587 3750 5.547465 AGTGTAGTACTAGTGCATTGCAAA 58.453 37.500 13.94 3.81 37.95 3.68
3589 3752 6.655003 AGTGTAGTACTAGTGCATTGCAAATT 59.345 34.615 13.94 4.92 37.95 1.82
3590 3753 7.174946 AGTGTAGTACTAGTGCATTGCAAATTT 59.825 33.333 13.94 2.39 37.95 1.82
3591 3754 7.271223 GTGTAGTACTAGTGCATTGCAAATTTG 59.729 37.037 13.94 14.03 41.47 2.32
3652 3815 9.823098 TTTTTCAAAATGGAATATTTGATTGCG 57.177 25.926 2.20 0.00 43.04 4.85
3712 3877 6.908870 AGTTTCAGGCATTTTTGTTTTCTC 57.091 33.333 0.00 0.00 0.00 2.87
3728 3893 6.602179 TGTTTTCTCGCTAATCATCAACTTG 58.398 36.000 0.00 0.00 0.00 3.16
3746 3911 7.112122 TCAACTTGGACACTGATATTGCTAAT 58.888 34.615 0.00 0.00 0.00 1.73
3747 3912 7.611467 TCAACTTGGACACTGATATTGCTAATT 59.389 33.333 0.00 0.00 0.00 1.40
3748 3913 8.892723 CAACTTGGACACTGATATTGCTAATTA 58.107 33.333 0.00 0.00 0.00 1.40
3749 3914 9.461312 AACTTGGACACTGATATTGCTAATTAA 57.539 29.630 0.00 0.00 0.00 1.40
3814 3986 5.276395 CCGATGACGCTAGTATCACTTTTTG 60.276 44.000 0.76 0.00 38.29 2.44
3854 4028 5.684704 TCTTCCTTGAATCAAGTGAGTGTT 58.315 37.500 20.18 0.00 39.58 3.32
3874 4048 5.631096 GTGTTATTTGCTTTTGAGGCTCTTC 59.369 40.000 16.72 1.02 0.00 2.87
4009 4186 2.288702 CGGGAGATATGAGGCTCACTTG 60.289 54.545 21.37 3.58 32.40 3.16
4078 4255 7.758076 CGTCAAGGTACTGATGTGTTATCTTTA 59.242 37.037 0.00 0.00 40.86 1.85
4085 4262 9.922305 GTACTGATGTGTTATCTTTAAATCTGC 57.078 33.333 0.00 0.00 0.00 4.26
4127 4308 4.462483 TCAATTCCCTCCAATGTTGCTAAC 59.538 41.667 0.00 0.00 0.00 2.34
4132 4313 5.253330 TCCCTCCAATGTTGCTAACTAAAG 58.747 41.667 0.00 0.00 0.00 1.85
4218 4399 9.249053 CTATCTAGGTAAGCAAGATCCAGATTA 57.751 37.037 0.00 0.00 32.39 1.75
4445 4626 3.302935 CGCTAGCTGCTATTGTTGTCATG 60.303 47.826 13.93 0.00 40.11 3.07
4446 4627 3.547613 GCTAGCTGCTATTGTTGTCATGC 60.548 47.826 10.23 2.29 38.95 4.06
4449 4643 3.119602 AGCTGCTATTGTTGTCATGCTTG 60.120 43.478 0.00 0.00 0.00 4.01
4467 4661 5.591099 TGCTTGTGGAAGAAGTCATTTTTC 58.409 37.500 0.00 0.00 39.80 2.29
4474 4668 9.748708 TGTGGAAGAAGTCATTTTTCTTTATTG 57.251 29.630 2.20 0.00 43.07 1.90
4477 4671 8.919661 GGAAGAAGTCATTTTTCTTTATTGCTG 58.080 33.333 2.20 0.00 43.07 4.41
4480 4674 6.100404 AGTCATTTTTCTTTATTGCTGCCA 57.900 33.333 0.00 0.00 0.00 4.92
4481 4675 6.523840 AGTCATTTTTCTTTATTGCTGCCAA 58.476 32.000 0.00 0.00 35.01 4.52
4491 4685 8.292444 TCTTTATTGCTGCCAATGTAAACTAT 57.708 30.769 0.00 0.00 41.58 2.12
4562 4756 9.661954 AAGATCTTATATTAGTTCACAGAGGGA 57.338 33.333 6.06 0.00 0.00 4.20
4758 4958 1.108727 CAAGGCAGGAGTTTGTGGCA 61.109 55.000 0.00 0.00 41.59 4.92
4776 4976 0.803768 CATCTCTGCGAAGGTCGGTG 60.804 60.000 0.00 0.00 40.84 4.94
4857 5072 7.446001 TTTATTTGATGTGTGTATGTGCAGA 57.554 32.000 0.00 0.00 0.00 4.26
4917 5132 2.100252 TGGAGTAACTAGGTATGCACGC 59.900 50.000 0.00 0.00 0.00 5.34
4944 5159 1.028130 TTTCTTGGTTGCGTGCATCA 58.972 45.000 0.00 0.00 0.00 3.07
4961 5176 3.259902 CATCATATGGTGCAGAGATCGG 58.740 50.000 2.32 0.00 0.00 4.18
4969 5184 2.808523 TGCAGAGATCGGCAAGATAG 57.191 50.000 5.15 0.00 43.64 2.08
4970 5185 2.310538 TGCAGAGATCGGCAAGATAGA 58.689 47.619 5.15 0.00 43.64 1.98
5092 5308 1.202818 AGAGTTGCAGGGAACAAGGAC 60.203 52.381 6.45 0.00 0.00 3.85
5130 5346 9.344772 CACCTTCAGTAAGTATAGATACTCACT 57.655 37.037 2.71 1.45 41.43 3.41
5175 5626 5.310451 TGGTTACACTGAAATTACCACCTC 58.690 41.667 0.00 0.00 31.14 3.85
5187 5638 7.180229 TGAAATTACCACCTCAACTATCAGAGA 59.820 37.037 0.00 0.00 33.74 3.10
5197 5648 6.040278 CCTCAACTATCAGAGACATTAGAGCA 59.960 42.308 0.00 0.00 33.74 4.26
5269 5932 7.724305 TTAATAATCCTCCATTGCGAACTAC 57.276 36.000 0.00 0.00 0.00 2.73
5272 5941 1.480954 TCCTCCATTGCGAACTACTCC 59.519 52.381 0.00 0.00 0.00 3.85
5275 5944 1.480954 TCCATTGCGAACTACTCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
5276 5945 1.473434 CCATTGCGAACTACTCCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
5277 5946 0.460311 ATTGCGAACTACTCCCTCCG 59.540 55.000 0.00 0.00 0.00 4.63
5278 5947 0.896940 TTGCGAACTACTCCCTCCGT 60.897 55.000 0.00 0.00 0.00 4.69
5279 5948 0.896940 TGCGAACTACTCCCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
5280 5949 0.179142 GCGAACTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 34.07 3.95
5281 5950 0.455005 CGAACTACTCCCTCCGTTCC 59.545 60.000 0.00 0.00 33.92 3.62
5283 5952 2.681976 CGAACTACTCCCTCCGTTCCTA 60.682 54.545 0.00 0.00 33.92 2.94
5284 5953 3.359950 GAACTACTCCCTCCGTTCCTAA 58.640 50.000 0.00 0.00 31.89 2.69
5285 5954 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5286 5955 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5287 5956 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5288 5957 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5289 5958 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5290 5959 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5291 5960 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5292 5961 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5293 5962 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5294 5963 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5295 5964 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5296 5965 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5297 5966 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5298 5967 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5299 5968 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5300 5969 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5301 5970 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5314 5983 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
5315 5984 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
5316 5985 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
5317 5986 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
5318 5987 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
5319 5988 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
5320 5989 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
5321 5990 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
5322 5991 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
5324 5993 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
5325 5994 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
5326 5995 8.902540 AGATTTCAACAAGTGACTACATACAA 57.097 30.769 0.00 0.00 35.39 2.41
5327 5996 9.337396 AGATTTCAACAAGTGACTACATACAAA 57.663 29.630 0.00 0.00 35.39 2.83
5328 5997 9.599322 GATTTCAACAAGTGACTACATACAAAG 57.401 33.333 0.00 0.00 35.39 2.77
5329 5998 6.539649 TCAACAAGTGACTACATACAAAGC 57.460 37.500 0.00 0.00 0.00 3.51
5330 5999 6.052360 TCAACAAGTGACTACATACAAAGCA 58.948 36.000 0.00 0.00 0.00 3.91
5331 6000 6.540551 TCAACAAGTGACTACATACAAAGCAA 59.459 34.615 0.00 0.00 0.00 3.91
5332 6001 6.935741 ACAAGTGACTACATACAAAGCAAA 57.064 33.333 0.00 0.00 0.00 3.68
5333 6002 7.328277 ACAAGTGACTACATACAAAGCAAAA 57.672 32.000 0.00 0.00 0.00 2.44
5334 6003 7.940850 ACAAGTGACTACATACAAAGCAAAAT 58.059 30.769 0.00 0.00 0.00 1.82
5335 6004 7.862372 ACAAGTGACTACATACAAAGCAAAATG 59.138 33.333 0.00 0.00 0.00 2.32
5336 6005 7.744087 AGTGACTACATACAAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
5337 6006 7.810658 AGTGACTACATACAAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
5338 6007 7.445402 AGTGACTACATACAAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
5339 6008 8.076178 GTGACTACATACAAAGCAAAATGAGTT 58.924 33.333 0.00 0.00 0.00 3.01
5340 6009 9.278978 TGACTACATACAAAGCAAAATGAGTTA 57.721 29.630 0.00 0.00 0.00 2.24
5387 6056 9.981114 CTACATACATTCATATGTTGTAGTCCA 57.019 33.333 19.00 5.83 41.98 4.02
5389 6058 9.851686 ACATACATTCATATGTTGTAGTCCATT 57.148 29.630 19.00 6.13 41.98 3.16
5392 6061 8.806429 ACATTCATATGTTGTAGTCCATTTGA 57.194 30.769 10.88 0.00 42.29 2.69
5393 6062 9.241919 ACATTCATATGTTGTAGTCCATTTGAA 57.758 29.630 10.88 7.58 42.29 2.69
5397 6066 9.241919 TCATATGTTGTAGTCCATTTGAAATGT 57.758 29.630 15.93 1.43 29.81 2.71
5398 6067 9.507280 CATATGTTGTAGTCCATTTGAAATGTC 57.493 33.333 15.93 9.10 0.00 3.06
5399 6068 6.325919 TGTTGTAGTCCATTTGAAATGTCC 57.674 37.500 15.93 6.56 0.00 4.02
5400 6069 5.830457 TGTTGTAGTCCATTTGAAATGTCCA 59.170 36.000 15.93 3.39 0.00 4.02
5401 6070 6.016360 TGTTGTAGTCCATTTGAAATGTCCAG 60.016 38.462 15.93 1.90 0.00 3.86
5402 6071 5.875224 TGTAGTCCATTTGAAATGTCCAGA 58.125 37.500 15.93 4.16 0.00 3.86
5403 6072 6.303054 TGTAGTCCATTTGAAATGTCCAGAA 58.697 36.000 15.93 0.00 0.00 3.02
5404 6073 6.775142 TGTAGTCCATTTGAAATGTCCAGAAA 59.225 34.615 15.93 0.00 0.00 2.52
5405 6074 6.336842 AGTCCATTTGAAATGTCCAGAAAG 57.663 37.500 15.93 0.00 0.00 2.62
5406 6075 6.070656 AGTCCATTTGAAATGTCCAGAAAGA 58.929 36.000 15.93 1.84 0.00 2.52
5407 6076 6.015940 AGTCCATTTGAAATGTCCAGAAAGAC 60.016 38.462 15.93 12.50 37.28 3.01
5421 6090 9.010029 TGTCCAGAAAGACAAATATTTAGGAAC 57.990 33.333 0.00 0.00 43.65 3.62
5422 6091 8.175716 GTCCAGAAAGACAAATATTTAGGAACG 58.824 37.037 0.00 0.00 36.73 3.95
5423 6092 7.335924 TCCAGAAAGACAAATATTTAGGAACGG 59.664 37.037 0.00 0.00 0.00 4.44
5424 6093 7.335924 CCAGAAAGACAAATATTTAGGAACGGA 59.664 37.037 0.00 0.00 0.00 4.69
5425 6094 8.391106 CAGAAAGACAAATATTTAGGAACGGAG 58.609 37.037 0.00 0.00 0.00 4.63
5426 6095 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5427 6096 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5428 6097 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5429 6098 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5430 6099 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5431 6100 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5432 6101 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
5433 6102 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
5434 6103 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
5435 6104 4.591321 TTAGGAACGGAGGGAGTAGTTA 57.409 45.455 0.00 0.00 0.00 2.24
5436 6105 3.684408 AGGAACGGAGGGAGTAGTTAT 57.316 47.619 0.00 0.00 0.00 1.89
5437 6106 4.803329 AGGAACGGAGGGAGTAGTTATA 57.197 45.455 0.00 0.00 0.00 0.98
5438 6107 5.134725 AGGAACGGAGGGAGTAGTTATAA 57.865 43.478 0.00 0.00 0.00 0.98
5439 6108 5.713807 AGGAACGGAGGGAGTAGTTATAAT 58.286 41.667 0.00 0.00 0.00 1.28
5465 6134 9.177608 TCTCGTTGATTTTCCATATTCAAATCT 57.822 29.630 10.34 0.00 37.66 2.40
5484 6153 1.995484 CTATGTTCAGCTGACGTGTGG 59.005 52.381 18.03 1.22 0.00 4.17
5486 6155 1.227556 GTTCAGCTGACGTGTGGGT 60.228 57.895 18.03 0.00 0.00 4.51
5504 6174 0.039035 GTCCAAGGCCAACCCATACA 59.961 55.000 5.01 0.00 36.11 2.29
5506 6176 1.113788 CCAAGGCCAACCCATACATG 58.886 55.000 5.01 0.00 36.11 3.21
5507 6177 0.461135 CAAGGCCAACCCATACATGC 59.539 55.000 5.01 0.00 36.11 4.06
5512 6183 0.390124 CCAACCCATACATGCCATGC 59.610 55.000 4.17 0.00 0.00 4.06
5533 6204 3.138304 CGAGAAATGGAGTGACAAACCA 58.862 45.455 4.65 4.65 38.09 3.67
5542 6214 3.763897 GGAGTGACAAACCATAAATGCCT 59.236 43.478 0.00 0.00 0.00 4.75
5872 6552 2.147958 TGGTAGATTGCGTTGTTGGTC 58.852 47.619 0.00 0.00 0.00 4.02
5954 6634 1.153647 ATCGCGGCGATCAAGTTCA 60.154 52.632 30.34 4.46 43.45 3.18
5959 6639 2.115291 GGCGATCAAGTTCAGGGGC 61.115 63.158 0.00 0.00 0.00 5.80
5962 6642 0.035056 CGATCAAGTTCAGGGGCCTT 60.035 55.000 0.84 0.00 0.00 4.35
6062 6742 2.032528 CCAAGCGCCTCAAGGACA 59.967 61.111 2.29 0.00 37.39 4.02
6063 6743 1.600636 CCAAGCGCCTCAAGGACAA 60.601 57.895 2.29 0.00 37.39 3.18
6224 6904 2.180769 CGACCATCGCGTTCCAGA 59.819 61.111 5.77 0.00 31.14 3.86
6526 7206 1.276820 TAGTGTACAACAACGGCGCG 61.277 55.000 6.90 0.00 0.00 6.86
6565 7245 0.538057 CAATGAGCACCACCACCACT 60.538 55.000 0.00 0.00 0.00 4.00
6934 7616 6.921857 TCAATTATTGTTACTCGGTAGCTAGC 59.078 38.462 13.03 13.03 0.00 3.42
6935 7617 6.651975 ATTATTGTTACTCGGTAGCTAGCT 57.348 37.500 23.12 23.12 0.00 3.32
6936 7618 7.756395 ATTATTGTTACTCGGTAGCTAGCTA 57.244 36.000 20.67 20.67 0.00 3.32
6937 7619 5.692613 ATTGTTACTCGGTAGCTAGCTAG 57.307 43.478 24.78 19.63 0.00 3.42
7142 7826 8.032451 GCTTGTAAATTTTGAATTGCTAGGGTA 58.968 33.333 0.00 0.00 0.00 3.69
7155 7839 1.696336 CTAGGGTAGATGGCACTGCAT 59.304 52.381 2.82 0.00 0.00 3.96
7159 7843 1.945394 GGTAGATGGCACTGCATTGAG 59.055 52.381 8.44 0.00 0.00 3.02
7183 7867 2.780014 CGATCAATGCGCAAATGAGTTC 59.220 45.455 26.49 20.51 0.00 3.01
7363 11420 4.988540 CCGAGTTGTTTGATACTGAAGTCA 59.011 41.667 0.00 0.00 0.00 3.41
7371 11428 7.217200 TGTTTGATACTGAAGTCAAGTAAGCT 58.783 34.615 0.00 0.00 35.91 3.74
7525 11599 7.787725 AATATAAGGCTCCAACTCTAAAACG 57.212 36.000 0.00 0.00 0.00 3.60
7533 11607 2.729882 CCAACTCTAAAACGTCGGTCTG 59.270 50.000 0.00 0.00 0.00 3.51
7712 11789 0.618968 TTGCCCTGGGTTTGGTTTGT 60.619 50.000 15.56 0.00 0.00 2.83
7721 11798 1.570813 GTTTGGTTTGTTGAGCTGCC 58.429 50.000 0.00 0.00 0.00 4.85
7797 11874 0.754957 CTCTCCTCGGCTCACCTGAT 60.755 60.000 0.00 0.00 0.00 2.90
7807 11885 4.021104 TCGGCTCACCTGATAAGATAATGG 60.021 45.833 0.00 0.00 0.00 3.16
7809 11887 4.006319 GCTCACCTGATAAGATAATGGGC 58.994 47.826 0.00 0.00 0.00 5.36
7826 11904 6.625532 AATGGGCCAGTTCATTTTAATCTT 57.374 33.333 13.78 0.00 30.27 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.465705 TCGATCCATCTCTTGTGCCC 59.534 55.000 0.00 0.00 0.00 5.36
108 111 4.175337 CCCCCACGTGATCGCCAT 62.175 66.667 19.30 0.00 41.18 4.40
350 353 6.187682 TGATTTAGGAAGAAAATGGAGGGTC 58.812 40.000 0.00 0.00 0.00 4.46
401 406 6.988580 TCATTGCAGACTAATTAGACATGGAG 59.011 38.462 19.38 5.48 0.00 3.86
403 408 7.558161 TTCATTGCAGACTAATTAGACATGG 57.442 36.000 19.38 7.93 0.00 3.66
405 410 8.743085 ACATTCATTGCAGACTAATTAGACAT 57.257 30.769 19.38 0.00 0.00 3.06
419 428 2.554142 CTAGCGAGGACATTCATTGCA 58.446 47.619 3.11 0.00 39.85 4.08
420 429 1.262683 GCTAGCGAGGACATTCATTGC 59.737 52.381 0.00 0.00 37.81 3.56
473 482 9.725019 ACACATGTATAATCTTCTTTCTGTGAA 57.275 29.630 0.00 0.00 35.47 3.18
476 485 9.302345 CGTACACATGTATAATCTTCTTTCTGT 57.698 33.333 0.00 0.00 32.54 3.41
477 486 9.516314 TCGTACACATGTATAATCTTCTTTCTG 57.484 33.333 0.00 0.00 32.54 3.02
478 487 9.737427 CTCGTACACATGTATAATCTTCTTTCT 57.263 33.333 0.00 0.00 32.54 2.52
479 488 9.517609 ACTCGTACACATGTATAATCTTCTTTC 57.482 33.333 0.00 0.00 32.54 2.62
481 490 9.947669 GTACTCGTACACATGTATAATCTTCTT 57.052 33.333 0.00 0.00 36.15 2.52
482 491 8.281194 CGTACTCGTACACATGTATAATCTTCT 58.719 37.037 0.00 0.00 35.87 2.85
483 492 8.419536 CGTACTCGTACACATGTATAATCTTC 57.580 38.462 0.00 0.00 35.87 2.87
506 515 9.232473 TCTCTCAGAAATGCAGTATATATACGT 57.768 33.333 15.57 0.00 38.28 3.57
512 521 8.028354 CGAGATTCTCTCAGAAATGCAGTATAT 58.972 37.037 11.75 0.00 43.55 0.86
519 528 4.050553 CCTCGAGATTCTCTCAGAAATGC 58.949 47.826 15.71 0.00 43.55 3.56
577 586 5.095145 TGGTACAGTACTACTCGATCAGT 57.905 43.478 10.62 4.65 39.41 3.41
721 736 5.122396 GTCAAAGCTGGATCGTATTCAAACT 59.878 40.000 0.00 0.00 0.00 2.66
771 786 1.917872 TCACCTTGGTAATTGCACCC 58.082 50.000 0.00 0.00 37.84 4.61
835 850 8.657387 TTCTTCTTCTTCTCTCTCTTTATGGA 57.343 34.615 0.00 0.00 0.00 3.41
938 955 0.771127 ATCTCTCTCCCTCTCTCCCG 59.229 60.000 0.00 0.00 0.00 5.14
939 956 3.814316 GCTAATCTCTCTCCCTCTCTCCC 60.814 56.522 0.00 0.00 0.00 4.30
940 957 3.074538 AGCTAATCTCTCTCCCTCTCTCC 59.925 52.174 0.00 0.00 0.00 3.71
941 958 4.074970 CAGCTAATCTCTCTCCCTCTCTC 58.925 52.174 0.00 0.00 0.00 3.20
942 959 3.181429 CCAGCTAATCTCTCTCCCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
948 965 3.161866 CCTACCCAGCTAATCTCTCTCC 58.838 54.545 0.00 0.00 0.00 3.71
967 984 7.006509 TGTTACCAGTACTACTAACAAGACCT 58.993 38.462 16.72 0.00 0.00 3.85
976 993 7.822161 TGACAACTTGTTACCAGTACTACTA 57.178 36.000 0.00 0.00 0.00 1.82
977 994 6.720112 TGACAACTTGTTACCAGTACTACT 57.280 37.500 0.00 0.00 0.00 2.57
978 995 6.367969 CCATGACAACTTGTTACCAGTACTAC 59.632 42.308 0.00 0.00 0.00 2.73
1098 1115 0.324091 TAGAAGAGGACACGGACCCC 60.324 60.000 0.00 0.00 0.00 4.95
1277 1298 2.292569 CCATGGATTCATTTCGCCTCAG 59.707 50.000 5.56 0.00 0.00 3.35
1368 1421 9.814507 CGCACATAACAACTTAAATAGTAAACA 57.185 29.630 0.00 0.00 35.54 2.83
1435 1488 9.889128 AAATAATACTAATGGCACTGCAAATTT 57.111 25.926 2.82 0.00 0.00 1.82
1439 1492 8.526978 TGAAAAATAATACTAATGGCACTGCAA 58.473 29.630 2.82 0.00 0.00 4.08
1440 1493 8.060931 TGAAAAATAATACTAATGGCACTGCA 57.939 30.769 2.82 0.00 0.00 4.41
1456 1509 8.275015 TGCCGATAAACTCTCATGAAAAATAA 57.725 30.769 0.00 0.00 0.00 1.40
1457 1510 7.857734 TGCCGATAAACTCTCATGAAAAATA 57.142 32.000 0.00 0.00 0.00 1.40
1471 1524 7.019418 ACTTAAGACGAAAATTGCCGATAAAC 58.981 34.615 10.09 0.00 0.00 2.01
1475 1528 5.048991 ACAACTTAAGACGAAAATTGCCGAT 60.049 36.000 10.09 0.00 0.00 4.18
1476 1529 4.273969 ACAACTTAAGACGAAAATTGCCGA 59.726 37.500 10.09 0.00 0.00 5.54
1477 1530 4.533222 ACAACTTAAGACGAAAATTGCCG 58.467 39.130 10.09 0.00 0.00 5.69
1478 1531 5.974751 TCAACAACTTAAGACGAAAATTGCC 59.025 36.000 10.09 0.00 0.00 4.52
1510 1563 5.133999 ACTCTCCCCTACAACAGCTACTATA 59.866 44.000 0.00 0.00 0.00 1.31
1511 1564 4.079096 ACTCTCCCCTACAACAGCTACTAT 60.079 45.833 0.00 0.00 0.00 2.12
1512 1565 3.268856 ACTCTCCCCTACAACAGCTACTA 59.731 47.826 0.00 0.00 0.00 1.82
1513 1566 2.043252 ACTCTCCCCTACAACAGCTACT 59.957 50.000 0.00 0.00 0.00 2.57
1514 1567 2.458620 ACTCTCCCCTACAACAGCTAC 58.541 52.381 0.00 0.00 0.00 3.58
1515 1568 2.921834 ACTCTCCCCTACAACAGCTA 57.078 50.000 0.00 0.00 0.00 3.32
1516 1569 2.043252 AGTACTCTCCCCTACAACAGCT 59.957 50.000 0.00 0.00 0.00 4.24
1517 1570 2.458620 AGTACTCTCCCCTACAACAGC 58.541 52.381 0.00 0.00 0.00 4.40
1518 1571 4.857679 ACTAGTACTCTCCCCTACAACAG 58.142 47.826 0.00 0.00 0.00 3.16
1519 1572 4.942363 ACTAGTACTCTCCCCTACAACA 57.058 45.455 0.00 0.00 0.00 3.33
1520 1573 5.749462 TGTACTAGTACTCTCCCCTACAAC 58.251 45.833 28.56 5.31 37.00 3.32
1521 1574 6.410157 GGATGTACTAGTACTCTCCCCTACAA 60.410 46.154 28.56 8.76 37.00 2.41
1522 1575 5.072872 GGATGTACTAGTACTCTCCCCTACA 59.927 48.000 28.56 11.60 37.00 2.74
1523 1576 5.072872 TGGATGTACTAGTACTCTCCCCTAC 59.927 48.000 31.21 18.23 37.57 3.18
1524 1577 5.229966 TGGATGTACTAGTACTCTCCCCTA 58.770 45.833 31.21 20.48 37.57 3.53
1525 1578 4.052922 TGGATGTACTAGTACTCTCCCCT 58.947 47.826 31.21 14.08 37.57 4.79
1748 1842 5.941647 ACTAGCACCGGTAACATTGTTAATT 59.058 36.000 6.87 0.00 0.00 1.40
1764 1858 6.384224 TGTGCGTGTATATATAACTAGCACC 58.616 40.000 24.83 15.55 43.49 5.01
1767 1861 8.691727 GCATATGTGCGTGTATATATAACTAGC 58.308 37.037 4.29 0.00 42.28 3.42
1825 1919 4.047125 CGGTTGGGTGCCCTGGAT 62.047 66.667 8.91 0.00 36.94 3.41
1959 2053 8.713971 ACTCCCTTGGAAAAATTAAGAAATGTT 58.286 29.630 0.00 0.00 0.00 2.71
1976 2070 6.940298 TGATTAGAAAACTAACACTCCCTTGG 59.060 38.462 0.00 0.00 0.00 3.61
1983 2077 7.506114 TCACAGGTGATTAGAAAACTAACACT 58.494 34.615 0.00 0.00 34.14 3.55
1987 2081 9.444600 GGTATTCACAGGTGATTAGAAAACTAA 57.555 33.333 2.52 0.00 39.64 2.24
2080 2175 3.009026 TGTTGCCTGCATGTACATGTAG 58.991 45.455 34.35 34.35 46.64 2.74
2117 2212 5.105228 CCCAAAAACCATGTCAAGATATGCT 60.105 40.000 1.72 0.00 0.00 3.79
2127 2222 4.967036 TCATTTTCCCCAAAAACCATGTC 58.033 39.130 0.00 0.00 39.59 3.06
2128 2223 4.657969 TCTCATTTTCCCCAAAAACCATGT 59.342 37.500 0.00 0.00 39.59 3.21
2129 2224 4.996758 GTCTCATTTTCCCCAAAAACCATG 59.003 41.667 0.00 0.00 39.59 3.66
2131 2226 4.033709 TGTCTCATTTTCCCCAAAAACCA 58.966 39.130 0.00 0.00 39.59 3.67
2132 2227 4.681074 TGTCTCATTTTCCCCAAAAACC 57.319 40.909 0.00 0.00 39.59 3.27
2143 2239 7.362056 CGAGTCCACCATATTTTGTCTCATTTT 60.362 37.037 0.00 0.00 0.00 1.82
2372 2519 3.975168 AACGCCATTAACACTCCTACT 57.025 42.857 0.00 0.00 0.00 2.57
2373 2520 4.569564 CCTTAACGCCATTAACACTCCTAC 59.430 45.833 0.00 0.00 0.00 3.18
2374 2521 4.467082 TCCTTAACGCCATTAACACTCCTA 59.533 41.667 0.00 0.00 0.00 2.94
2457 2609 3.006323 AGACTTGAGGAACTGTGCTACTG 59.994 47.826 0.00 0.00 41.55 2.74
2492 2649 0.178891 AGGCCAAGACCCAAGAGAGA 60.179 55.000 5.01 0.00 0.00 3.10
2567 2724 1.769716 GATAGGCCGGGAAAGGGAGG 61.770 65.000 2.18 0.00 0.00 4.30
2589 2746 2.933260 GGTCTCTACTTAAGCTTGCTGC 59.067 50.000 9.86 0.00 43.29 5.25
2655 2812 2.560119 TTGTTCACGGTGGCCATGC 61.560 57.895 9.72 0.00 0.00 4.06
2925 3082 1.621317 TCGGAATAAGATATGCCGCCA 59.379 47.619 11.23 0.00 41.61 5.69
2937 3094 1.909986 TGGTGGTGATGGTCGGAATAA 59.090 47.619 0.00 0.00 0.00 1.40
2973 3130 2.520500 ACCATGTTGTTGCCGCCA 60.521 55.556 0.00 0.00 0.00 5.69
3035 3192 4.135153 CGCTACTGCCGCCAGAGT 62.135 66.667 0.00 0.00 41.77 3.24
3259 3419 2.904866 TTGCTCCGGTGGTTGTGC 60.905 61.111 0.00 0.00 0.00 4.57
3260 3420 1.785041 CTGTTGCTCCGGTGGTTGTG 61.785 60.000 0.00 0.00 0.00 3.33
3261 3421 1.525995 CTGTTGCTCCGGTGGTTGT 60.526 57.895 0.00 0.00 0.00 3.32
3262 3422 1.227823 TCTGTTGCTCCGGTGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
3263 3423 1.071471 CTCTGTTGCTCCGGTGGTT 59.929 57.895 0.00 0.00 0.00 3.67
3264 3424 2.743718 CTCTGTTGCTCCGGTGGT 59.256 61.111 0.00 0.00 0.00 4.16
3384 3544 2.264794 GCCGTGTCATCCTTCCGT 59.735 61.111 0.00 0.00 0.00 4.69
3450 3613 3.429141 CTGCTTCCGCCAGTGCTG 61.429 66.667 0.00 0.00 34.43 4.41
3480 3643 2.401592 CTCGACGCTGGAGTCTCG 59.598 66.667 3.34 0.00 38.90 4.04
3486 3649 1.587043 CTGTCTTCCTCGACGCTGGA 61.587 60.000 5.51 5.51 36.71 3.86
3504 3667 4.555709 TGCCCAAACGTGTCGGCT 62.556 61.111 15.81 0.00 42.15 5.52
3537 3700 0.680601 TATACCTGGTCACGCCACGA 60.681 55.000 0.63 0.00 43.61 4.35
3562 3725 5.647589 TGCAATGCACTAGTACTACACTAC 58.352 41.667 2.72 0.00 34.25 2.73
3563 3726 5.907866 TGCAATGCACTAGTACTACACTA 57.092 39.130 2.72 0.00 34.25 2.74
3564 3727 4.801330 TGCAATGCACTAGTACTACACT 57.199 40.909 2.72 0.00 35.85 3.55
3567 3730 7.725610 CAAATTTGCAATGCACTAGTACTAC 57.274 36.000 7.72 0.00 38.71 2.73
3589 3752 9.624697 GTTCAGATACTTTCATGTTTATTGCAA 57.375 29.630 0.00 0.00 0.00 4.08
3590 3753 8.791675 TGTTCAGATACTTTCATGTTTATTGCA 58.208 29.630 0.00 0.00 0.00 4.08
3591 3754 9.793252 ATGTTCAGATACTTTCATGTTTATTGC 57.207 29.630 0.00 0.00 0.00 3.56
3639 3802 7.887996 ATGACACAAAACGCAATCAAATATT 57.112 28.000 0.00 0.00 0.00 1.28
3652 3815 7.148255 TGGATGCTCAGTATAATGACACAAAAC 60.148 37.037 0.00 0.00 0.00 2.43
3712 3877 3.935203 AGTGTCCAAGTTGATGATTAGCG 59.065 43.478 3.87 0.00 0.00 4.26
3746 3911 9.466497 AAAGAAACTAGATTGATCCATGCTTAA 57.534 29.630 0.00 0.00 0.00 1.85
3747 3912 9.113838 GAAAGAAACTAGATTGATCCATGCTTA 57.886 33.333 0.00 0.00 0.00 3.09
3748 3913 7.067981 GGAAAGAAACTAGATTGATCCATGCTT 59.932 37.037 0.00 0.00 0.00 3.91
3749 3914 6.545298 GGAAAGAAACTAGATTGATCCATGCT 59.455 38.462 0.00 0.00 0.00 3.79
3790 3960 3.627732 AAGTGATACTAGCGTCATCGG 57.372 47.619 1.50 0.00 37.56 4.18
3831 4003 5.296151 ACACTCACTTGATTCAAGGAAGA 57.704 39.130 25.94 19.29 44.81 2.87
3836 4008 7.365741 AGCAAATAACACTCACTTGATTCAAG 58.634 34.615 22.00 22.00 45.85 3.02
3854 4028 5.769662 TCAAGAAGAGCCTCAAAAGCAAATA 59.230 36.000 0.00 0.00 0.00 1.40
3961 4135 6.886459 TCCATCTATGCCTATTAAAGCCAATC 59.114 38.462 0.00 0.00 0.00 2.67
3988 4165 1.626686 AGTGAGCCTCATATCTCCCG 58.373 55.000 0.00 0.00 0.00 5.14
4009 4186 1.334869 CTTCTGCAACTGTTGTCCCAC 59.665 52.381 20.57 5.42 0.00 4.61
4109 4290 4.919774 TTAGTTAGCAACATTGGAGGGA 57.080 40.909 0.00 0.00 0.00 4.20
4152 4333 3.513515 AGGCCAAGTTCAAACAAAGTTGA 59.486 39.130 5.01 0.00 40.48 3.18
4169 4350 0.534203 GTGTGGAGTCGAAAAGGCCA 60.534 55.000 5.01 0.00 0.00 5.36
4434 4615 3.890756 TCTTCCACAAGCATGACAACAAT 59.109 39.130 0.00 0.00 0.00 2.71
4445 4626 5.836347 AGAAAAATGACTTCTTCCACAAGC 58.164 37.500 0.00 0.00 28.46 4.01
4446 4627 9.971922 ATAAAGAAAAATGACTTCTTCCACAAG 57.028 29.630 0.00 0.00 41.24 3.16
4449 4643 8.703336 GCAATAAAGAAAAATGACTTCTTCCAC 58.297 33.333 0.00 0.00 41.24 4.02
4467 4661 8.931385 AATAGTTTACATTGGCAGCAATAAAG 57.069 30.769 0.00 0.00 0.00 1.85
4553 4747 8.980481 AATAATAAAATGGTACTCCCTCTGTG 57.020 34.615 0.00 0.00 0.00 3.66
4722 4922 2.350804 CCTTGTCATGTGCTTCATCTCG 59.649 50.000 0.00 0.00 34.09 4.04
4758 4958 1.251527 ACACCGACCTTCGCAGAGAT 61.252 55.000 0.00 0.00 38.82 2.75
4798 4998 6.146673 AGTTGATTTGCTAACCACGTACTTAC 59.853 38.462 0.00 0.00 0.00 2.34
4799 4999 6.225318 AGTTGATTTGCTAACCACGTACTTA 58.775 36.000 0.00 0.00 0.00 2.24
4800 5000 5.061179 AGTTGATTTGCTAACCACGTACTT 58.939 37.500 0.00 0.00 0.00 2.24
4801 5001 4.638304 AGTTGATTTGCTAACCACGTACT 58.362 39.130 0.00 0.00 0.00 2.73
4802 5002 6.470557 TTAGTTGATTTGCTAACCACGTAC 57.529 37.500 0.00 0.00 0.00 3.67
4803 5003 6.402766 GCATTAGTTGATTTGCTAACCACGTA 60.403 38.462 0.00 0.00 31.06 3.57
4804 5004 5.619086 GCATTAGTTGATTTGCTAACCACGT 60.619 40.000 0.00 0.00 31.06 4.49
4805 5005 4.793216 GCATTAGTTGATTTGCTAACCACG 59.207 41.667 0.00 0.00 31.06 4.94
4806 5006 5.954335 AGCATTAGTTGATTTGCTAACCAC 58.046 37.500 0.00 0.00 43.28 4.16
4807 5007 7.695480 TTAGCATTAGTTGATTTGCTAACCA 57.305 32.000 11.09 0.00 46.89 3.67
4833 5048 7.446001 TCTGCACATACACACATCAAATAAA 57.554 32.000 0.00 0.00 0.00 1.40
4857 5072 2.439507 TCTGGAGAAACCACTGCTCTTT 59.560 45.455 0.00 0.00 44.64 2.52
4917 5132 2.116366 CGCAACCAAGAAAAGGAAACG 58.884 47.619 0.00 0.00 0.00 3.60
4944 5159 1.051008 TGCCGATCTCTGCACCATAT 58.949 50.000 0.00 0.00 31.18 1.78
4957 5172 5.552870 AATGTTAGGTCTATCTTGCCGAT 57.447 39.130 0.00 0.00 36.11 4.18
4961 5176 7.434492 TGTAGCTAATGTTAGGTCTATCTTGC 58.566 38.462 7.67 0.00 41.34 4.01
5092 5308 0.984230 TGAAGGTGCCCAAGTAGAGG 59.016 55.000 0.00 0.00 0.00 3.69
5130 5346 8.780846 ACCAAACGTATTCAGTGTAATTGATA 57.219 30.769 0.00 0.00 30.57 2.15
5138 5354 5.235616 CAGTGTAACCAAACGTATTCAGTGT 59.764 40.000 0.00 0.00 37.80 3.55
5227 5678 7.733402 TTATTAATAAATGTACCCGGCTGTC 57.267 36.000 5.41 0.00 0.00 3.51
5269 5932 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5272 5941 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5275 5944 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5288 5957 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
5289 5958 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
5290 5959 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
5291 5960 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
5292 5961 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
5293 5962 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
5294 5963 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
5295 5964 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
5296 5965 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
5297 5966 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
5298 5967 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
5299 5968 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
5300 5969 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
5301 5970 8.902540 TTGTATGTAGTCACTTGTTGAAATCT 57.097 30.769 0.00 0.00 35.39 2.40
5302 5971 9.599322 CTTTGTATGTAGTCACTTGTTGAAATC 57.401 33.333 0.00 0.00 35.39 2.17
5303 5972 8.076178 GCTTTGTATGTAGTCACTTGTTGAAAT 58.924 33.333 0.00 0.00 35.39 2.17
5304 5973 7.066404 TGCTTTGTATGTAGTCACTTGTTGAAA 59.934 33.333 0.00 0.00 35.39 2.69
5305 5974 6.540551 TGCTTTGTATGTAGTCACTTGTTGAA 59.459 34.615 0.00 0.00 35.39 2.69
5306 5975 6.052360 TGCTTTGTATGTAGTCACTTGTTGA 58.948 36.000 0.00 0.00 0.00 3.18
5307 5976 6.299023 TGCTTTGTATGTAGTCACTTGTTG 57.701 37.500 0.00 0.00 0.00 3.33
5308 5977 6.935741 TTGCTTTGTATGTAGTCACTTGTT 57.064 33.333 0.00 0.00 0.00 2.83
5309 5978 6.935741 TTTGCTTTGTATGTAGTCACTTGT 57.064 33.333 0.00 0.00 0.00 3.16
5310 5979 8.075574 TCATTTTGCTTTGTATGTAGTCACTTG 58.924 33.333 0.00 0.00 0.00 3.16
5311 5980 8.165239 TCATTTTGCTTTGTATGTAGTCACTT 57.835 30.769 0.00 0.00 0.00 3.16
5312 5981 7.445402 ACTCATTTTGCTTTGTATGTAGTCACT 59.555 33.333 0.00 0.00 0.00 3.41
5313 5982 7.584987 ACTCATTTTGCTTTGTATGTAGTCAC 58.415 34.615 0.00 0.00 0.00 3.67
5314 5983 7.744087 ACTCATTTTGCTTTGTATGTAGTCA 57.256 32.000 0.00 0.00 0.00 3.41
5361 6030 9.981114 TGGACTACAACATATGAATGTATGTAG 57.019 33.333 22.32 22.32 45.79 2.74
5363 6032 9.851686 AATGGACTACAACATATGAATGTATGT 57.148 29.630 19.26 18.14 45.79 2.29
5366 6035 9.898152 TCAAATGGACTACAACATATGAATGTA 57.102 29.630 10.38 15.73 45.79 2.29
5371 6040 9.241919 ACATTTCAAATGGACTACAACATATGA 57.758 29.630 14.70 0.00 0.00 2.15
5372 6041 9.507280 GACATTTCAAATGGACTACAACATATG 57.493 33.333 14.70 0.00 0.00 1.78
5373 6042 8.686334 GGACATTTCAAATGGACTACAACATAT 58.314 33.333 14.70 0.00 0.00 1.78
5374 6043 7.667635 TGGACATTTCAAATGGACTACAACATA 59.332 33.333 14.70 0.00 0.00 2.29
5375 6044 6.493115 TGGACATTTCAAATGGACTACAACAT 59.507 34.615 14.70 0.00 0.00 2.71
5376 6045 5.830457 TGGACATTTCAAATGGACTACAACA 59.170 36.000 14.70 0.00 0.00 3.33
5377 6046 6.206634 TCTGGACATTTCAAATGGACTACAAC 59.793 38.462 14.70 0.00 0.00 3.32
5378 6047 6.303054 TCTGGACATTTCAAATGGACTACAA 58.697 36.000 14.70 0.00 0.00 2.41
5379 6048 5.875224 TCTGGACATTTCAAATGGACTACA 58.125 37.500 14.70 0.00 0.00 2.74
5380 6049 6.817765 TTCTGGACATTTCAAATGGACTAC 57.182 37.500 14.70 0.00 0.00 2.73
5381 6050 7.174946 GTCTTTCTGGACATTTCAAATGGACTA 59.825 37.037 14.70 5.48 36.35 2.59
5382 6051 6.015940 GTCTTTCTGGACATTTCAAATGGACT 60.016 38.462 14.70 0.00 36.35 3.85
5383 6052 6.152379 GTCTTTCTGGACATTTCAAATGGAC 58.848 40.000 14.70 7.14 36.35 4.02
5384 6053 5.832595 TGTCTTTCTGGACATTTCAAATGGA 59.167 36.000 14.70 0.00 40.72 3.41
5385 6054 6.088016 TGTCTTTCTGGACATTTCAAATGG 57.912 37.500 14.70 0.00 40.72 3.16
5386 6055 8.597662 ATTTGTCTTTCTGGACATTTCAAATG 57.402 30.769 8.67 8.67 44.30 2.32
5393 6062 9.753674 TCCTAAATATTTGTCTTTCTGGACATT 57.246 29.630 11.05 0.00 44.30 2.71
5394 6063 9.753674 TTCCTAAATATTTGTCTTTCTGGACAT 57.246 29.630 11.05 0.00 44.30 3.06
5395 6064 9.010029 GTTCCTAAATATTTGTCTTTCTGGACA 57.990 33.333 11.05 0.00 43.41 4.02
5396 6065 8.175716 CGTTCCTAAATATTTGTCTTTCTGGAC 58.824 37.037 11.05 0.00 36.81 4.02
5397 6066 7.335924 CCGTTCCTAAATATTTGTCTTTCTGGA 59.664 37.037 11.05 3.34 0.00 3.86
5398 6067 7.335924 TCCGTTCCTAAATATTTGTCTTTCTGG 59.664 37.037 11.05 3.95 0.00 3.86
5399 6068 8.263940 TCCGTTCCTAAATATTTGTCTTTCTG 57.736 34.615 11.05 0.00 0.00 3.02
5400 6069 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5401 6070 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5402 6071 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5403 6072 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5404 6073 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5405 6074 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5406 6075 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5407 6076 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5408 6077 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5409 6078 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
5410 6079 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
5411 6080 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
5412 6081 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
5413 6082 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
5414 6083 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
5415 6084 4.803329 ATAACTACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
5416 6085 3.684408 ATAACTACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
5417 6086 5.774184 AGATTATAACTACTCCCTCCGTTCC 59.226 44.000 0.00 0.00 0.00 3.62
5418 6087 6.348376 CGAGATTATAACTACTCCCTCCGTTC 60.348 46.154 9.20 0.00 0.00 3.95
5419 6088 5.472820 CGAGATTATAACTACTCCCTCCGTT 59.527 44.000 9.20 0.00 0.00 4.44
5420 6089 5.002516 CGAGATTATAACTACTCCCTCCGT 58.997 45.833 9.20 0.00 0.00 4.69
5421 6090 5.002516 ACGAGATTATAACTACTCCCTCCG 58.997 45.833 0.00 0.00 0.00 4.63
5422 6091 6.489361 TCAACGAGATTATAACTACTCCCTCC 59.511 42.308 0.00 0.00 0.00 4.30
5423 6092 7.507733 TCAACGAGATTATAACTACTCCCTC 57.492 40.000 0.00 0.00 0.00 4.30
5424 6093 8.480133 AATCAACGAGATTATAACTACTCCCT 57.520 34.615 6.16 0.00 45.00 4.20
5425 6094 9.543783 AAAATCAACGAGATTATAACTACTCCC 57.456 33.333 7.96 0.00 46.09 4.30
5438 6107 9.956720 GATTTGAATATGGAAAATCAACGAGAT 57.043 29.630 10.77 0.00 39.20 2.75
5439 6108 9.177608 AGATTTGAATATGGAAAATCAACGAGA 57.822 29.630 15.18 0.00 40.95 4.04
5455 6124 7.010460 CACGTCAGCTGAACATAGATTTGAATA 59.990 37.037 20.19 0.00 0.00 1.75
5465 6134 1.337728 CCCACACGTCAGCTGAACATA 60.338 52.381 20.19 0.00 0.00 2.29
5470 6139 2.734591 GACCCACACGTCAGCTGA 59.265 61.111 13.74 13.74 32.74 4.26
5484 6153 0.683179 GTATGGGTTGGCCTTGGACC 60.683 60.000 3.32 6.96 34.45 4.46
5486 6155 1.006813 ATGTATGGGTTGGCCTTGGA 58.993 50.000 3.32 0.00 34.45 3.53
5504 6174 1.315690 CTCCATTTCTCGCATGGCAT 58.684 50.000 0.00 0.00 41.10 4.40
5506 6176 0.379669 CACTCCATTTCTCGCATGGC 59.620 55.000 0.00 0.00 41.10 4.40
5507 6177 1.667724 GTCACTCCATTTCTCGCATGG 59.332 52.381 0.00 0.00 42.51 3.66
5512 6183 3.138304 TGGTTTGTCACTCCATTTCTCG 58.862 45.455 0.00 0.00 0.00 4.04
5542 6214 2.286125 CGATTTTGTCGCGCCATTCATA 60.286 45.455 0.00 0.00 44.33 2.15
5849 6529 3.244284 ACCAACAACGCAATCTACCAGTA 60.244 43.478 0.00 0.00 0.00 2.74
5954 6634 2.221299 TGACAGCGTTAAGGCCCCT 61.221 57.895 16.15 0.00 0.00 4.79
6637 7317 2.511373 CTCATGTTGCCGCCGCTA 60.511 61.111 0.00 0.00 35.36 4.26
6934 7616 4.256920 CAGAAGAACACCATCCCAACTAG 58.743 47.826 0.00 0.00 0.00 2.57
6935 7617 3.009033 CCAGAAGAACACCATCCCAACTA 59.991 47.826 0.00 0.00 0.00 2.24
6936 7618 2.224867 CCAGAAGAACACCATCCCAACT 60.225 50.000 0.00 0.00 0.00 3.16
6937 7619 2.162681 CCAGAAGAACACCATCCCAAC 58.837 52.381 0.00 0.00 0.00 3.77
7055 7737 1.073923 CCCTAGTCAATGCCCCCATAC 59.926 57.143 0.00 0.00 0.00 2.39
7142 7826 0.395311 CCCTCAATGCAGTGCCATCT 60.395 55.000 13.72 0.00 0.00 2.90
7155 7839 2.472059 GCGCATTGATCGCCCTCAA 61.472 57.895 0.30 0.00 46.18 3.02
7210 7895 9.076596 CAAAGAAAACACTAAAGGAAACAGAAG 57.923 33.333 0.00 0.00 0.00 2.85
7232 7917 3.221771 TCTCACCACATTGGAACCAAAG 58.778 45.455 10.36 8.65 40.96 2.77
7363 11420 8.040716 AGTTATTTGCATTTACGAGCTTACTT 57.959 30.769 0.00 0.00 0.00 2.24
7371 11428 7.602644 AGTTCAGAGAGTTATTTGCATTTACGA 59.397 33.333 0.00 0.00 0.00 3.43
7499 11573 8.674607 CGTTTTAGAGTTGGAGCCTTATATTTT 58.325 33.333 0.00 0.00 0.00 1.82
7509 11583 1.725164 CCGACGTTTTAGAGTTGGAGC 59.275 52.381 0.00 0.00 43.06 4.70
7525 11599 1.293924 CAATCATCTGCCAGACCGAC 58.706 55.000 0.00 0.00 0.00 4.79
7533 11607 2.751259 TGTTCTCTTGCAATCATCTGCC 59.249 45.455 0.00 0.00 41.90 4.85
7721 11798 0.892358 AGGCAGCTGACCACAATGTG 60.892 55.000 18.28 6.37 0.00 3.21
7736 11813 6.233905 TCAACTGCTCAAATATACTAGGCA 57.766 37.500 0.00 0.00 0.00 4.75
7797 11874 8.830915 TTAAAATGAACTGGCCCATTATCTTA 57.169 30.769 0.00 0.00 33.13 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.