Multiple sequence alignment - TraesCS3B01G427000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G427000 chr3B 100.000 7119 0 0 1 7119 665463444 665470562 0.000000e+00 13147.0
1 TraesCS3B01G427000 chr3D 95.484 6267 174 38 922 7119 504054845 504061071 0.000000e+00 9904.0
2 TraesCS3B01G427000 chr3D 92.453 53 4 0 854 906 504054757 504054809 7.660000e-10 76.8
3 TraesCS3B01G427000 chr3D 100.000 28 0 0 718 745 504054680 504054707 1.300000e-02 52.8
4 TraesCS3B01G427000 chr3A 94.468 5315 209 29 1848 7111 642366066 642371346 0.000000e+00 8107.0
5 TraesCS3B01G427000 chr3A 92.764 1147 41 17 868 1976 642364927 642366069 0.000000e+00 1620.0
6 TraesCS3B01G427000 chr3A 88.606 667 49 11 4 643 642364192 642364858 0.000000e+00 785.0
7 TraesCS3B01G427000 chr5B 92.915 988 43 10 1520 2487 540406596 540405616 0.000000e+00 1411.0
8 TraesCS3B01G427000 chr1B 93.129 946 38 9 1521 2446 35063229 35064167 0.000000e+00 1362.0
9 TraesCS3B01G427000 chr1B 100.000 31 0 0 2457 2487 35064166 35064196 2.770000e-04 58.4
10 TraesCS3B01G427000 chr6B 87.845 905 96 7 3042 3936 690963611 690964511 0.000000e+00 1050.0
11 TraesCS3B01G427000 chr6B 82.957 886 109 9 4363 5208 690964992 690965875 0.000000e+00 761.0
12 TraesCS3B01G427000 chr6B 85.918 632 69 8 4015 4633 690964506 690965130 0.000000e+00 656.0
13 TraesCS3B01G427000 chr6B 85.325 477 59 6 5541 6013 690966398 690966867 3.860000e-132 483.0
14 TraesCS3B01G427000 chr6B 78.272 810 123 32 1059 1846 690961589 690962367 8.360000e-129 472.0
15 TraesCS3B01G427000 chr6A 88.000 900 92 7 3042 3936 600695193 600696081 0.000000e+00 1050.0
16 TraesCS3B01G427000 chr6A 83.882 881 103 9 4363 5206 600696562 600697440 0.000000e+00 804.0
17 TraesCS3B01G427000 chr6A 86.342 637 67 8 4015 4638 600696076 600696705 0.000000e+00 676.0
18 TraesCS3B01G427000 chr6A 82.857 700 78 21 2324 3000 600694516 600695196 2.210000e-164 590.0
19 TraesCS3B01G427000 chr6A 84.906 477 62 5 5541 6013 600697951 600698421 2.320000e-129 473.0
20 TraesCS3B01G427000 chr6A 81.065 507 68 16 1058 1541 600693346 600693847 5.210000e-101 379.0
21 TraesCS3B01G427000 chr6A 95.946 148 6 0 6516 6663 381088855 381088708 2.570000e-59 241.0
22 TraesCS3B01G427000 chr6D 87.140 902 87 9 3042 3936 454487822 454488701 0.000000e+00 996.0
23 TraesCS3B01G427000 chr6D 82.086 882 115 11 4363 5208 454489182 454490056 0.000000e+00 713.0
24 TraesCS3B01G427000 chr6D 86.656 637 65 8 4015 4638 454488696 454489325 0.000000e+00 688.0
25 TraesCS3B01G427000 chr6D 85.325 477 60 5 5541 6013 454490579 454491049 1.070000e-132 484.0
26 TraesCS3B01G427000 chr6D 79.089 593 75 29 1059 1628 454486290 454486856 5.250000e-96 363.0
27 TraesCS3B01G427000 chr6D 81.707 328 42 9 5229 5543 454490049 454490371 2.550000e-64 257.0
28 TraesCS3B01G427000 chr6D 95.270 148 7 0 6516 6663 267532962 267532815 1.190000e-57 235.0
29 TraesCS3B01G427000 chr6D 93.919 148 9 0 6516 6663 269703954 269703807 2.580000e-54 224.0
30 TraesCS3B01G427000 chr1D 95.238 147 7 0 6517 6663 194467446 194467300 4.290000e-57 233.0
31 TraesCS3B01G427000 chr7A 94.558 147 8 0 6517 6663 552975381 552975527 2.000000e-55 228.0
32 TraesCS3B01G427000 chr2D 94.595 148 7 1 6516 6663 380416677 380416531 2.000000e-55 228.0
33 TraesCS3B01G427000 chr2A 94.000 150 8 1 6516 6665 515951791 515951643 7.190000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G427000 chr3B 665463444 665470562 7118 False 13147.000000 13147 100.000000 1 7119 1 chr3B.!!$F1 7118
1 TraesCS3B01G427000 chr3D 504054680 504061071 6391 False 3344.533333 9904 95.979000 718 7119 3 chr3D.!!$F1 6401
2 TraesCS3B01G427000 chr3A 642364192 642371346 7154 False 3504.000000 8107 91.946000 4 7111 3 chr3A.!!$F1 7107
3 TraesCS3B01G427000 chr5B 540405616 540406596 980 True 1411.000000 1411 92.915000 1520 2487 1 chr5B.!!$R1 967
4 TraesCS3B01G427000 chr1B 35063229 35064196 967 False 710.200000 1362 96.564500 1521 2487 2 chr1B.!!$F1 966
5 TraesCS3B01G427000 chr6B 690961589 690966867 5278 False 684.400000 1050 84.063400 1059 6013 5 chr6B.!!$F1 4954
6 TraesCS3B01G427000 chr6A 600693346 600698421 5075 False 662.000000 1050 84.508667 1058 6013 6 chr6A.!!$F1 4955
7 TraesCS3B01G427000 chr6D 454486290 454491049 4759 False 583.500000 996 83.667167 1059 6013 6 chr6D.!!$F1 4954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 664 0.032130 GAGCGCCGATGTGAATAGGA 59.968 55.000 2.29 0.00 0.00 2.94 F
638 666 0.032130 GCGCCGATGTGAATAGGAGA 59.968 55.000 0.00 0.00 0.00 3.71 F
1208 1300 0.615331 AGGTACCATCAGCACTGTGG 59.385 55.000 15.94 14.05 37.59 4.17 F
2730 3543 2.422597 CATCAAGACACCGGCTTTACA 58.577 47.619 0.00 0.00 0.00 2.41 F
3074 3893 0.322546 GGTGCCAACTCCCGATTTCT 60.323 55.000 0.00 0.00 0.00 2.52 F
4422 5397 1.552337 TCAGTCTGAAGCAGATGTCCC 59.448 52.381 0.00 0.00 42.73 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 1579 0.449388 GTCAGCAATTCCTCGCAAGG 59.551 55.0 0.00 0.00 44.89 3.61 R
2091 2701 1.624336 ATGCTTGCTTTCAGCCTCAA 58.376 45.0 0.00 0.00 41.51 3.02 R
2848 3667 1.556564 GGACCATACACGTGATGTCG 58.443 55.0 25.01 11.49 42.09 4.35 R
4280 5108 0.752054 TTTGTGCCAAGGAAAGCAGG 59.248 50.0 0.00 0.00 40.28 4.85 R
4959 5955 0.968405 TTGGGATCTTGCTTTGTGGC 59.032 50.0 0.00 0.00 0.00 5.01 R
6274 7521 2.351706 TTGCCGGGAAAAACTACAGT 57.648 45.0 5.67 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.120338 GCTTGTGCTACGCTTATTGTTCA 60.120 43.478 0.00 0.00 36.03 3.18
58 59 2.410392 TGTGCTACGCTTATTGTTCACG 59.590 45.455 0.00 0.00 0.00 4.35
77 78 4.478195 CGAGTGGTAGTCGCCTTG 57.522 61.111 0.00 0.00 34.02 3.61
93 94 8.788325 AGTCGCCTTGTACTTATAATTCTTTT 57.212 30.769 0.00 0.00 0.00 2.27
145 172 5.486095 GCAATTTGCGTACTCTCAAAAAG 57.514 39.130 5.49 6.12 36.02 2.27
228 255 1.731700 CACTGCCATGCATGCCTAC 59.268 57.895 21.69 10.31 38.13 3.18
265 292 9.218440 CAAGGTTTTTATTTGCATCCAATAACT 57.782 29.630 2.26 0.00 0.00 2.24
267 294 8.374743 AGGTTTTTATTTGCATCCAATAACTGT 58.625 29.630 2.26 0.00 0.00 3.55
268 295 8.442384 GGTTTTTATTTGCATCCAATAACTGTG 58.558 33.333 2.26 0.00 0.00 3.66
278 305 3.758023 TCCAATAACTGTGTGCCAGATTG 59.242 43.478 0.00 0.00 44.49 2.67
296 323 1.118356 TGGCCGCCAAGGTTTTGATT 61.118 50.000 10.50 0.00 43.70 2.57
314 341 2.363788 TTATGGCGCTACGGATGATC 57.636 50.000 7.64 0.00 0.00 2.92
363 390 5.788055 TTAGAACGATCGCTAAATTTGCA 57.212 34.783 16.60 0.00 0.00 4.08
367 394 6.092748 AGAACGATCGCTAAATTTGCAAAAT 58.907 32.000 17.19 4.62 0.00 1.82
376 403 6.733280 CGCTAAATTTGCAAAATTACTGCTTG 59.267 34.615 17.19 6.63 40.59 4.01
437 464 8.594881 ATCGATCAATAACTAAGAATCACACC 57.405 34.615 0.00 0.00 0.00 4.16
528 556 2.259439 GCACTGTGCTTCTGCTGCT 61.259 57.895 24.68 0.00 40.96 4.24
530 558 1.147824 ACTGTGCTTCTGCTGCTGT 59.852 52.632 0.00 0.00 40.48 4.40
616 644 2.180674 CTGACGACCAGGACGATGA 58.819 57.895 18.62 0.42 39.23 2.92
622 650 2.279120 CCAGGACGATGAGAGCGC 60.279 66.667 0.00 0.00 0.00 5.92
624 652 3.893763 AGGACGATGAGAGCGCCG 61.894 66.667 2.29 0.84 32.71 6.46
631 659 0.528466 GATGAGAGCGCCGATGTGAA 60.528 55.000 2.29 0.00 0.00 3.18
632 660 0.105593 ATGAGAGCGCCGATGTGAAT 59.894 50.000 2.29 0.00 0.00 2.57
633 661 0.744281 TGAGAGCGCCGATGTGAATA 59.256 50.000 2.29 0.00 0.00 1.75
634 662 1.269257 TGAGAGCGCCGATGTGAATAG 60.269 52.381 2.29 0.00 0.00 1.73
635 663 0.032678 AGAGCGCCGATGTGAATAGG 59.967 55.000 2.29 0.00 0.00 2.57
636 664 0.032130 GAGCGCCGATGTGAATAGGA 59.968 55.000 2.29 0.00 0.00 2.94
637 665 0.032678 AGCGCCGATGTGAATAGGAG 59.967 55.000 2.29 0.00 0.00 3.69
638 666 0.032130 GCGCCGATGTGAATAGGAGA 59.968 55.000 0.00 0.00 0.00 3.71
639 667 1.538204 GCGCCGATGTGAATAGGAGAA 60.538 52.381 0.00 0.00 0.00 2.87
640 668 2.398498 CGCCGATGTGAATAGGAGAAG 58.602 52.381 0.00 0.00 0.00 2.85
641 669 2.034685 CGCCGATGTGAATAGGAGAAGA 59.965 50.000 0.00 0.00 0.00 2.87
642 670 3.490933 CGCCGATGTGAATAGGAGAAGAA 60.491 47.826 0.00 0.00 0.00 2.52
643 671 4.636249 GCCGATGTGAATAGGAGAAGAAT 58.364 43.478 0.00 0.00 0.00 2.40
644 672 5.059833 GCCGATGTGAATAGGAGAAGAATT 58.940 41.667 0.00 0.00 0.00 2.17
645 673 6.223852 GCCGATGTGAATAGGAGAAGAATTA 58.776 40.000 0.00 0.00 0.00 1.40
646 674 6.146347 GCCGATGTGAATAGGAGAAGAATTAC 59.854 42.308 0.00 0.00 0.00 1.89
647 675 7.437748 CCGATGTGAATAGGAGAAGAATTACT 58.562 38.462 0.00 0.00 0.00 2.24
648 676 7.596995 CCGATGTGAATAGGAGAAGAATTACTC 59.403 40.741 0.00 0.00 0.00 2.59
649 677 8.356657 CGATGTGAATAGGAGAAGAATTACTCT 58.643 37.037 0.00 0.00 35.13 3.24
652 680 9.475620 TGTGAATAGGAGAAGAATTACTCTACA 57.524 33.333 0.00 0.00 32.46 2.74
657 685 7.412853 AGGAGAAGAATTACTCTACAAGACC 57.587 40.000 0.00 0.00 32.46 3.85
658 686 7.186268 AGGAGAAGAATTACTCTACAAGACCT 58.814 38.462 0.00 0.00 32.46 3.85
659 687 8.337739 AGGAGAAGAATTACTCTACAAGACCTA 58.662 37.037 0.00 0.00 32.46 3.08
660 688 8.626526 GGAGAAGAATTACTCTACAAGACCTAG 58.373 40.741 0.00 0.00 32.46 3.02
661 689 8.528044 AGAAGAATTACTCTACAAGACCTAGG 57.472 38.462 7.41 7.41 32.46 3.02
662 690 6.718522 AGAATTACTCTACAAGACCTAGGC 57.281 41.667 9.30 1.39 30.22 3.93
663 691 6.195700 AGAATTACTCTACAAGACCTAGGCA 58.804 40.000 9.30 0.00 30.22 4.75
664 692 5.855740 ATTACTCTACAAGACCTAGGCAC 57.144 43.478 9.30 3.31 0.00 5.01
665 693 3.170991 ACTCTACAAGACCTAGGCACA 57.829 47.619 9.30 0.00 0.00 4.57
666 694 3.093057 ACTCTACAAGACCTAGGCACAG 58.907 50.000 9.30 0.00 0.00 3.66
667 695 3.245300 ACTCTACAAGACCTAGGCACAGA 60.245 47.826 9.30 2.53 0.00 3.41
668 696 3.957497 CTCTACAAGACCTAGGCACAGAT 59.043 47.826 9.30 0.00 0.00 2.90
669 697 4.353777 TCTACAAGACCTAGGCACAGATT 58.646 43.478 9.30 0.00 0.00 2.40
670 698 4.777896 TCTACAAGACCTAGGCACAGATTT 59.222 41.667 9.30 0.00 0.00 2.17
671 699 3.944087 ACAAGACCTAGGCACAGATTTC 58.056 45.455 9.30 0.00 0.00 2.17
672 700 2.932614 CAAGACCTAGGCACAGATTTCG 59.067 50.000 9.30 0.00 0.00 3.46
673 701 2.180276 AGACCTAGGCACAGATTTCGT 58.820 47.619 9.30 0.00 0.00 3.85
674 702 2.093973 AGACCTAGGCACAGATTTCGTG 60.094 50.000 9.30 0.00 37.43 4.35
675 703 1.066143 ACCTAGGCACAGATTTCGTGG 60.066 52.381 9.30 0.00 34.85 4.94
676 704 1.656652 CTAGGCACAGATTTCGTGGG 58.343 55.000 0.00 0.00 34.85 4.61
677 705 1.207089 CTAGGCACAGATTTCGTGGGA 59.793 52.381 0.00 0.00 34.85 4.37
681 709 1.066858 GCACAGATTTCGTGGGAGAGA 60.067 52.381 0.00 0.00 34.85 3.10
690 718 4.891992 TTCGTGGGAGAGAAGAAGAAAT 57.108 40.909 0.00 0.00 0.00 2.17
694 722 6.947464 TCGTGGGAGAGAAGAAGAAATAATT 58.053 36.000 0.00 0.00 0.00 1.40
705 733 6.500684 AGAAGAAATAATTGAGCGCTTGAA 57.499 33.333 13.26 8.50 0.00 2.69
759 797 2.094130 GCTATACCAGATCGCTAACCCC 60.094 54.545 0.00 0.00 0.00 4.95
764 802 2.041216 ACCAGATCGCTAACCCCTTTTT 59.959 45.455 0.00 0.00 0.00 1.94
904 942 2.180769 GCGGAATTGTTTCGGCCC 59.819 61.111 0.00 0.00 46.71 5.80
924 987 4.779475 CCCAATAGGCTGTAGGCG 57.221 61.111 0.00 0.00 46.23 5.52
983 1049 4.161333 CGTACGGAGAAGTAACGAAATGT 58.839 43.478 7.57 0.00 0.00 2.71
988 1054 3.994392 GGAGAAGTAACGAAATGTCAGCA 59.006 43.478 0.00 0.00 0.00 4.41
993 1059 3.494626 AGTAACGAAATGTCAGCACAGTG 59.505 43.478 0.00 0.00 35.41 3.66
994 1060 1.953559 ACGAAATGTCAGCACAGTGT 58.046 45.000 1.61 0.00 35.41 3.55
995 1061 1.867233 ACGAAATGTCAGCACAGTGTC 59.133 47.619 1.61 0.00 35.41 3.67
1047 1120 4.894784 TCGGTTTGATCTGCTAAGAAGTT 58.105 39.130 0.00 0.00 35.59 2.66
1103 1189 0.893270 TCTGGGTGTTTCAATGCCGG 60.893 55.000 0.00 0.00 0.00 6.13
1194 1286 4.678309 CGACTTCTCCCTCATCAAAGGTAC 60.678 50.000 0.00 0.00 34.34 3.34
1204 1296 3.264193 TCATCAAAGGTACCATCAGCACT 59.736 43.478 15.94 0.00 0.00 4.40
1208 1300 0.615331 AGGTACCATCAGCACTGTGG 59.385 55.000 15.94 14.05 37.59 4.17
1259 1356 3.002791 GACGCTTTCAATGATCTCACCA 58.997 45.455 0.00 0.00 0.00 4.17
1457 1579 2.813226 TAGGGTTGATGCCACACGCC 62.813 60.000 0.00 0.00 36.24 5.68
1737 2207 7.775561 AGACCACAACTCATAATCTTAATTCCC 59.224 37.037 0.00 0.00 0.00 3.97
1929 2404 8.443937 GGTAGAGTTATGTTTTCACTGATTCAC 58.556 37.037 0.00 0.00 0.00 3.18
2028 2629 5.947228 ACATGTGTTTACCAATGACTCAG 57.053 39.130 0.00 0.00 0.00 3.35
2091 2701 3.898482 AGTCAACAGTAGTGGGCTTTTT 58.102 40.909 1.92 0.00 25.53 1.94
2250 2876 5.587443 TGAGCTCATGTTTCTTGTGATATGG 59.413 40.000 13.74 0.00 0.00 2.74
2288 2914 2.929641 TGGCAATTGTGTCTCAAGTCA 58.070 42.857 7.40 0.00 39.55 3.41
2365 3153 7.333528 AGTTATACGTTTACGATGTCCCTAA 57.666 36.000 9.53 0.00 43.02 2.69
2366 3154 7.771183 AGTTATACGTTTACGATGTCCCTAAA 58.229 34.615 9.53 0.00 43.02 1.85
2554 3362 6.763135 TCATCATATGCTCTGGTGTCTTTAAC 59.237 38.462 0.00 0.00 0.00 2.01
2560 3368 3.304057 GCTCTGGTGTCTTTAACTTGTGC 60.304 47.826 0.00 0.00 0.00 4.57
2644 3457 5.132502 TGAATGTAATATCTGCAGGTTGGG 58.867 41.667 15.13 0.00 0.00 4.12
2677 3490 4.080129 AGCTTGGAGAAAGATATGCTTCCA 60.080 41.667 0.00 0.00 38.24 3.53
2730 3543 2.422597 CATCAAGACACCGGCTTTACA 58.577 47.619 0.00 0.00 0.00 2.41
2743 3556 4.976116 CCGGCTTTACAAGAAACTTCTTTG 59.024 41.667 1.87 2.07 44.70 2.77
2845 3664 8.902540 TTTATGTTCAGCTTAGAGAAGTGAAA 57.097 30.769 0.00 0.00 35.93 2.69
2848 3667 4.273148 TCAGCTTAGAGAAGTGAAACCC 57.727 45.455 0.00 0.00 37.80 4.11
3074 3893 0.322546 GGTGCCAACTCCCGATTTCT 60.323 55.000 0.00 0.00 0.00 2.52
3582 4404 4.819630 ACTACATGGCAGAAAAACTCGAAA 59.180 37.500 0.00 0.00 0.00 3.46
3683 4505 7.840716 TGGAAAAGGATTCTGGTCATAATGAAT 59.159 33.333 0.00 0.00 32.59 2.57
4275 5103 7.872113 AAACATATTTGGAAGCTAGGAAGAG 57.128 36.000 0.00 0.00 0.00 2.85
4419 5394 2.255406 AGGTCAGTCTGAAGCAGATGT 58.745 47.619 3.51 0.00 42.73 3.06
4422 5397 1.552337 TCAGTCTGAAGCAGATGTCCC 59.448 52.381 0.00 0.00 42.73 4.46
4811 5807 5.557893 GCGCAACATTCATCTCAGAATAGAC 60.558 44.000 0.30 0.00 36.13 2.59
4959 5955 0.443869 CCTTGGCGAAACATGAGACG 59.556 55.000 0.00 2.70 0.00 4.18
5126 6131 1.672881 GCACTTCTTTCCCCGATCATG 59.327 52.381 0.00 0.00 0.00 3.07
5403 6435 2.166459 TCTAATCGGACTTGCCACTCTG 59.834 50.000 0.00 0.00 35.94 3.35
5405 6437 0.687354 ATCGGACTTGCCACTCTGTT 59.313 50.000 0.00 0.00 35.94 3.16
5629 6872 7.801104 TGTAATTCCAGAAACTGAGCCATATA 58.199 34.615 0.00 0.00 32.44 0.86
5652 6895 3.753272 TGTCTTTGCAGCTGTAATTCTCC 59.247 43.478 18.31 5.80 0.00 3.71
5772 7019 7.879070 TGATGCTAAAATCTTATGCCATCTTC 58.121 34.615 0.00 0.00 0.00 2.87
5866 7113 2.034104 TCTGACTCAGGATGCAATGC 57.966 50.000 6.20 0.00 34.76 3.56
6039 7286 4.953579 ACTTTTGCCTCAAAAAGGTACTGA 59.046 37.500 12.55 0.00 46.74 3.41
6359 7606 3.523564 ACTACACCATCTGGCACCTAATT 59.476 43.478 0.00 0.00 39.32 1.40
6405 7652 3.003689 CACCAACAGGTCTTCACACAATC 59.996 47.826 0.00 0.00 31.84 2.67
6538 7785 4.113354 GAGTATCACCAAAGAACTAGCCG 58.887 47.826 0.00 0.00 33.17 5.52
6613 7860 3.797039 TGCGAGATCTTATGGGTTTCAG 58.203 45.455 0.00 0.00 0.00 3.02
6627 7874 2.093075 GGTTTCAGTTCTAGCCTACCCC 60.093 54.545 0.00 0.00 0.00 4.95
6647 7894 1.956477 CAACTTGTTTGGGACTGAGGG 59.044 52.381 0.00 0.00 0.00 4.30
6648 7895 0.178990 ACTTGTTTGGGACTGAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
6649 7896 0.895559 CTTGTTTGGGACTGAGGGCC 60.896 60.000 0.00 0.00 0.00 5.80
6650 7897 1.360393 TTGTTTGGGACTGAGGGCCT 61.360 55.000 5.25 5.25 0.00 5.19
6651 7898 1.360393 TGTTTGGGACTGAGGGCCTT 61.360 55.000 7.89 0.00 0.00 4.35
6652 7899 0.895559 GTTTGGGACTGAGGGCCTTG 60.896 60.000 7.89 6.73 0.00 3.61
6653 7900 1.360393 TTTGGGACTGAGGGCCTTGT 61.360 55.000 7.89 10.47 0.00 3.16
6654 7901 1.360393 TTGGGACTGAGGGCCTTGTT 61.360 55.000 7.89 0.00 0.00 2.83
6655 7902 1.303643 GGGACTGAGGGCCTTGTTG 60.304 63.158 7.89 0.64 0.00 3.33
6656 7903 1.456287 GGACTGAGGGCCTTGTTGT 59.544 57.895 7.89 4.31 0.00 3.32
6657 7904 0.178990 GGACTGAGGGCCTTGTTGTT 60.179 55.000 7.89 0.00 0.00 2.83
6746 7994 3.138283 TGGAATTTCGGCATCCCTAATCT 59.862 43.478 0.00 0.00 32.01 2.40
6751 7999 4.336889 TTCGGCATCCCTAATCTACTTG 57.663 45.455 0.00 0.00 0.00 3.16
6786 8034 5.047802 CAGCCATGTTACTCTCCAAACATTT 60.048 40.000 0.00 0.00 42.22 2.32
6787 8035 6.150976 CAGCCATGTTACTCTCCAAACATTTA 59.849 38.462 0.00 0.00 42.22 1.40
6843 8091 3.385755 GCAAAAGCCCACCATATCTCATT 59.614 43.478 0.00 0.00 0.00 2.57
6847 8095 3.602608 AGCCCACCATATCTCATTAGGT 58.397 45.455 0.00 0.00 0.00 3.08
6869 8117 1.558233 AGGGTCAAGAGGAACGGTAG 58.442 55.000 0.00 0.00 32.36 3.18
6882 8130 4.704057 AGGAACGGTAGTAGTAGAAACAGG 59.296 45.833 0.00 0.00 0.00 4.00
6885 8133 4.021916 ACGGTAGTAGTAGAAACAGGCAT 58.978 43.478 0.00 0.00 0.00 4.40
6894 8142 3.788227 AGAAACAGGCATAGTGTTCCA 57.212 42.857 0.00 0.00 37.13 3.53
6934 8182 5.096443 GAGACAATCTCCTTCCTGTTGAT 57.904 43.478 0.00 0.00 37.55 2.57
6935 8183 5.495640 GAGACAATCTCCTTCCTGTTGATT 58.504 41.667 0.00 0.00 37.55 2.57
6968 8237 4.406069 CACACTCAGGTTTATCGCAAATG 58.594 43.478 0.00 0.00 0.00 2.32
6978 8247 6.072175 AGGTTTATCGCAAATGCTGAAAAGTA 60.072 34.615 3.63 0.00 39.32 2.24
6986 8255 5.703876 CAAATGCTGAAAAGTAGAGGGAAC 58.296 41.667 0.00 0.00 0.00 3.62
7007 8276 1.247567 GTTCACACATGGGAGGTTGG 58.752 55.000 0.00 0.00 0.00 3.77
7019 8288 3.011144 TGGGAGGTTGGCTATTCAATGAA 59.989 43.478 0.00 0.00 0.00 2.57
7024 8293 6.536224 GGAGGTTGGCTATTCAATGAATTTTG 59.464 38.462 14.15 6.40 33.95 2.44
7025 8294 6.408869 AGGTTGGCTATTCAATGAATTTTGG 58.591 36.000 14.15 4.14 33.95 3.28
7026 8295 6.013466 AGGTTGGCTATTCAATGAATTTTGGT 60.013 34.615 14.15 0.00 33.95 3.67
7071 8341 5.451354 GAGAGGACTAGTTAAGGGAGACAT 58.549 45.833 0.00 0.00 0.00 3.06
7077 8347 4.532521 ACTAGTTAAGGGAGACATGCAACT 59.467 41.667 0.00 0.00 35.31 3.16
7111 8381 2.107366 TGAGATGTTCAGGTATGCCGA 58.893 47.619 0.00 0.00 40.50 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.884774 AAACGGCAGCCACCCTGA 61.885 61.111 13.30 0.00 44.64 3.86
1 2 3.673484 CAAACGGCAGCCACCCTG 61.673 66.667 13.30 0.00 44.67 4.45
2 3 3.884774 TCAAACGGCAGCCACCCT 61.885 61.111 13.30 0.00 0.00 4.34
6 7 1.671054 GCTAGTCAAACGGCAGCCA 60.671 57.895 13.30 0.00 0.00 4.75
7 8 2.399356 GGCTAGTCAAACGGCAGCC 61.399 63.158 0.00 0.00 44.54 4.85
8 9 2.740714 CGGCTAGTCAAACGGCAGC 61.741 63.158 0.00 0.00 0.00 5.25
9 10 2.100631 CCGGCTAGTCAAACGGCAG 61.101 63.158 0.00 0.00 39.85 4.85
10 11 1.895020 ATCCGGCTAGTCAAACGGCA 61.895 55.000 0.00 0.00 45.58 5.69
44 45 0.025001 CTCGCCGTGAACAATAAGCG 59.975 55.000 0.00 0.00 44.61 4.68
52 53 0.731855 GACTACCACTCGCCGTGAAC 60.732 60.000 6.29 0.00 46.81 3.18
110 111 5.229423 ACGCAAATTGCATGTCATAGTTTT 58.771 33.333 18.65 0.00 45.36 2.43
118 145 3.125146 TGAGAGTACGCAAATTGCATGTC 59.875 43.478 18.65 8.40 45.36 3.06
192 219 5.050159 GGCAGTGCCTTTTTATTTCTTTGTG 60.050 40.000 27.48 0.00 46.69 3.33
228 255 3.436700 AAAAACCTTGCACGGAAGAAG 57.563 42.857 17.43 0.00 0.00 2.85
278 305 0.892063 TAATCAAAACCTTGGCGGCC 59.108 50.000 13.32 13.32 35.61 6.13
296 323 0.170339 CGATCATCCGTAGCGCCATA 59.830 55.000 2.29 0.00 0.00 2.74
337 364 8.391859 TGCAAATTTAGCGATCGTTCTAATTAA 58.608 29.630 17.81 2.87 33.85 1.40
363 390 8.299570 AGTCGATCAAATTCAAGCAGTAATTTT 58.700 29.630 0.00 0.00 34.01 1.82
367 394 5.122239 CCAGTCGATCAAATTCAAGCAGTAA 59.878 40.000 0.00 0.00 0.00 2.24
376 403 4.271291 GGCTCTTACCAGTCGATCAAATTC 59.729 45.833 0.00 0.00 0.00 2.17
434 461 5.018539 TCCTGGTAATTGAGAATACGGTG 57.981 43.478 0.00 0.00 0.00 4.94
437 464 6.392625 TCTCTCCTGGTAATTGAGAATACG 57.607 41.667 0.00 0.00 34.91 3.06
495 522 2.184448 CAGTGCGTGTTCCAAACTTTG 58.816 47.619 0.00 0.00 0.00 2.77
519 547 1.598962 GGCACTCACAGCAGCAGAA 60.599 57.895 0.00 0.00 0.00 3.02
528 556 0.320683 CTGATTGACCGGCACTCACA 60.321 55.000 0.00 0.00 33.28 3.58
530 558 1.375908 GCTGATTGACCGGCACTCA 60.376 57.895 0.00 9.89 38.29 3.41
582 610 3.400054 AGGGAGGCACGGGCTAAC 61.400 66.667 10.74 0.55 38.98 2.34
583 611 3.399181 CAGGGAGGCACGGGCTAA 61.399 66.667 10.74 0.00 38.98 3.09
584 612 4.392166 TCAGGGAGGCACGGGCTA 62.392 66.667 10.74 0.00 38.98 3.93
610 638 2.026734 CATCGGCGCTCTCATCGT 59.973 61.111 7.64 0.00 0.00 3.73
611 639 2.026734 ACATCGGCGCTCTCATCG 59.973 61.111 7.64 0.17 0.00 3.84
614 642 0.744281 TATTCACATCGGCGCTCTCA 59.256 50.000 7.64 0.00 0.00 3.27
616 644 0.032678 CCTATTCACATCGGCGCTCT 59.967 55.000 7.64 0.00 0.00 4.09
622 650 7.437748 AGTAATTCTTCTCCTATTCACATCGG 58.562 38.462 0.00 0.00 0.00 4.18
631 659 9.138596 GGTCTTGTAGAGTAATTCTTCTCCTAT 57.861 37.037 0.00 0.00 37.36 2.57
632 660 8.337739 AGGTCTTGTAGAGTAATTCTTCTCCTA 58.662 37.037 0.00 0.00 37.36 2.94
633 661 7.186268 AGGTCTTGTAGAGTAATTCTTCTCCT 58.814 38.462 0.00 0.00 37.36 3.69
634 662 7.412853 AGGTCTTGTAGAGTAATTCTTCTCC 57.587 40.000 0.00 0.00 37.36 3.71
635 663 8.626526 CCTAGGTCTTGTAGAGTAATTCTTCTC 58.373 40.741 0.00 0.00 37.36 2.87
636 664 7.068962 GCCTAGGTCTTGTAGAGTAATTCTTCT 59.931 40.741 11.31 0.00 37.36 2.85
637 665 7.147880 TGCCTAGGTCTTGTAGAGTAATTCTTC 60.148 40.741 11.31 0.00 37.36 2.87
638 666 6.668283 TGCCTAGGTCTTGTAGAGTAATTCTT 59.332 38.462 11.31 0.00 37.36 2.52
639 667 6.097129 GTGCCTAGGTCTTGTAGAGTAATTCT 59.903 42.308 11.31 0.00 40.06 2.40
640 668 6.127423 TGTGCCTAGGTCTTGTAGAGTAATTC 60.127 42.308 11.31 0.00 0.00 2.17
641 669 5.720041 TGTGCCTAGGTCTTGTAGAGTAATT 59.280 40.000 11.31 0.00 0.00 1.40
642 670 5.269991 TGTGCCTAGGTCTTGTAGAGTAAT 58.730 41.667 11.31 0.00 0.00 1.89
643 671 4.669700 TGTGCCTAGGTCTTGTAGAGTAA 58.330 43.478 11.31 0.00 0.00 2.24
644 672 4.018688 TCTGTGCCTAGGTCTTGTAGAGTA 60.019 45.833 11.31 0.00 0.00 2.59
645 673 3.093057 CTGTGCCTAGGTCTTGTAGAGT 58.907 50.000 11.31 0.00 0.00 3.24
646 674 3.357203 TCTGTGCCTAGGTCTTGTAGAG 58.643 50.000 11.31 0.00 0.00 2.43
647 675 3.451402 TCTGTGCCTAGGTCTTGTAGA 57.549 47.619 11.31 3.71 0.00 2.59
648 676 4.744795 AATCTGTGCCTAGGTCTTGTAG 57.255 45.455 11.31 1.35 0.00 2.74
649 677 4.381612 CGAAATCTGTGCCTAGGTCTTGTA 60.382 45.833 11.31 0.00 0.00 2.41
650 678 3.617531 CGAAATCTGTGCCTAGGTCTTGT 60.618 47.826 11.31 0.00 0.00 3.16
651 679 2.932614 CGAAATCTGTGCCTAGGTCTTG 59.067 50.000 11.31 0.00 0.00 3.02
652 680 2.567615 ACGAAATCTGTGCCTAGGTCTT 59.432 45.455 11.31 0.00 0.00 3.01
653 681 2.093973 CACGAAATCTGTGCCTAGGTCT 60.094 50.000 11.31 0.00 0.00 3.85
654 682 2.271800 CACGAAATCTGTGCCTAGGTC 58.728 52.381 11.31 3.32 0.00 3.85
655 683 1.066143 CCACGAAATCTGTGCCTAGGT 60.066 52.381 11.31 0.00 36.01 3.08
656 684 1.656652 CCACGAAATCTGTGCCTAGG 58.343 55.000 3.67 3.67 36.01 3.02
657 685 1.207089 TCCCACGAAATCTGTGCCTAG 59.793 52.381 0.00 0.00 36.01 3.02
658 686 1.207089 CTCCCACGAAATCTGTGCCTA 59.793 52.381 0.00 0.00 36.01 3.93
659 687 0.036010 CTCCCACGAAATCTGTGCCT 60.036 55.000 0.00 0.00 36.01 4.75
660 688 0.036388 TCTCCCACGAAATCTGTGCC 60.036 55.000 0.00 0.00 36.01 5.01
661 689 1.066858 TCTCTCCCACGAAATCTGTGC 60.067 52.381 0.00 0.00 36.01 4.57
662 690 3.056536 TCTTCTCTCCCACGAAATCTGTG 60.057 47.826 0.00 0.00 37.09 3.66
663 691 3.165875 TCTTCTCTCCCACGAAATCTGT 58.834 45.455 0.00 0.00 0.00 3.41
664 692 3.876274 TCTTCTCTCCCACGAAATCTG 57.124 47.619 0.00 0.00 0.00 2.90
665 693 4.090090 TCTTCTTCTCTCCCACGAAATCT 58.910 43.478 0.00 0.00 0.00 2.40
666 694 4.457834 TCTTCTTCTCTCCCACGAAATC 57.542 45.455 0.00 0.00 0.00 2.17
667 695 4.891992 TTCTTCTTCTCTCCCACGAAAT 57.108 40.909 0.00 0.00 0.00 2.17
668 696 4.682778 TTTCTTCTTCTCTCCCACGAAA 57.317 40.909 0.00 0.00 0.00 3.46
669 697 4.891992 ATTTCTTCTTCTCTCCCACGAA 57.108 40.909 0.00 0.00 0.00 3.85
670 698 5.995565 TTATTTCTTCTTCTCTCCCACGA 57.004 39.130 0.00 0.00 0.00 4.35
671 699 6.818644 TCAATTATTTCTTCTTCTCTCCCACG 59.181 38.462 0.00 0.00 0.00 4.94
672 700 7.201688 GCTCAATTATTTCTTCTTCTCTCCCAC 60.202 40.741 0.00 0.00 0.00 4.61
673 701 6.825721 GCTCAATTATTTCTTCTTCTCTCCCA 59.174 38.462 0.00 0.00 0.00 4.37
674 702 6.018343 CGCTCAATTATTTCTTCTTCTCTCCC 60.018 42.308 0.00 0.00 0.00 4.30
675 703 6.510960 GCGCTCAATTATTTCTTCTTCTCTCC 60.511 42.308 0.00 0.00 0.00 3.71
676 704 6.257630 AGCGCTCAATTATTTCTTCTTCTCTC 59.742 38.462 2.64 0.00 0.00 3.20
677 705 6.112058 AGCGCTCAATTATTTCTTCTTCTCT 58.888 36.000 2.64 0.00 0.00 3.10
681 709 6.500684 TCAAGCGCTCAATTATTTCTTCTT 57.499 33.333 12.06 0.00 0.00 2.52
690 718 4.385447 GCACAAAATTCAAGCGCTCAATTA 59.615 37.500 21.43 4.37 0.00 1.40
694 722 1.769733 GCACAAAATTCAAGCGCTCA 58.230 45.000 12.06 0.00 0.00 4.26
705 733 1.156736 CGAGGTTCCTCGCACAAAAT 58.843 50.000 24.74 0.00 47.00 1.82
850 888 9.927668 CAGACAGTTTTGGATTTGGTTATTTAT 57.072 29.630 0.00 0.00 0.00 1.40
851 889 7.870445 GCAGACAGTTTTGGATTTGGTTATTTA 59.130 33.333 0.00 0.00 0.00 1.40
852 890 6.705825 GCAGACAGTTTTGGATTTGGTTATTT 59.294 34.615 0.00 0.00 0.00 1.40
853 891 6.223120 GCAGACAGTTTTGGATTTGGTTATT 58.777 36.000 0.00 0.00 0.00 1.40
854 892 5.279456 GGCAGACAGTTTTGGATTTGGTTAT 60.279 40.000 0.00 0.00 0.00 1.89
855 893 4.038642 GGCAGACAGTTTTGGATTTGGTTA 59.961 41.667 0.00 0.00 0.00 2.85
856 894 3.181466 GGCAGACAGTTTTGGATTTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
924 987 2.316586 TGAGATTTCCCCAGGCCCC 61.317 63.158 0.00 0.00 0.00 5.80
935 999 2.042831 GCCCAGCAGCGTGAGATTT 61.043 57.895 0.00 0.00 0.00 2.17
983 1049 2.421314 CACGGGACACTGTGCTGA 59.579 61.111 15.86 0.00 46.13 4.26
1194 1286 1.077930 CCTCCCACAGTGCTGATGG 60.078 63.158 6.17 9.38 34.07 3.51
1208 1300 1.052617 GAATAGGCAGAGGGTCCTCC 58.947 60.000 12.99 0.00 43.70 4.30
1457 1579 0.449388 GTCAGCAATTCCTCGCAAGG 59.551 55.000 0.00 0.00 44.89 3.61
1696 2166 3.076621 GTGGTCTGACTTTGCATCATGA 58.923 45.455 7.85 0.00 0.00 3.07
1929 2404 4.843147 TGTCGCTAAACACAATCACTTTG 58.157 39.130 0.00 0.00 41.36 2.77
2017 2617 3.252701 GCTGCCATATTCTGAGTCATTGG 59.747 47.826 0.00 0.00 0.00 3.16
2028 2629 3.252701 CCTGTCAGAATGCTGCCATATTC 59.747 47.826 0.00 0.00 42.01 1.75
2091 2701 1.624336 ATGCTTGCTTTCAGCCTCAA 58.376 45.000 0.00 0.00 41.51 3.02
2250 2876 6.899393 TTGCCAAGGGATATAATCATGTTC 57.101 37.500 0.00 0.00 0.00 3.18
2258 2884 5.765510 AGACACAATTGCCAAGGGATATAA 58.234 37.500 5.05 0.00 0.00 0.98
2288 2914 2.275380 GGGCGTTGGCACTTGGAAT 61.275 57.895 0.00 0.00 40.32 3.01
2365 3153 7.826252 ACTGTAAAGTGATGCTGTTATGATCTT 59.174 33.333 0.00 0.00 0.00 2.40
2366 3154 7.334090 ACTGTAAAGTGATGCTGTTATGATCT 58.666 34.615 0.00 0.00 0.00 2.75
2554 3362 4.319333 GCAGCATGTATTAGCTAGCACAAG 60.319 45.833 18.83 10.39 39.50 3.16
2644 3457 3.409026 TTCTCCAAGCTTCCTGAACTC 57.591 47.619 0.00 0.00 0.00 3.01
2677 3490 6.954102 ACTTTTGGATATCCTTGCTAAAAGGT 59.046 34.615 29.52 21.09 37.86 3.50
2848 3667 1.556564 GGACCATACACGTGATGTCG 58.443 55.000 25.01 11.49 42.09 4.35
3582 4404 1.202639 TGTCATGTTGCGGTGAACTCT 60.203 47.619 0.00 0.00 0.00 3.24
3683 4505 1.899814 ACCAGCAGTTCGTAGATTCCA 59.100 47.619 0.00 0.00 35.04 3.53
3885 4710 9.316594 TCTTCCTACCATCGGATGTATTATTTA 57.683 33.333 16.29 0.00 0.00 1.40
3992 4820 5.128919 GCCCATCAATGATAGAAGACAAGT 58.871 41.667 0.00 0.00 0.00 3.16
4275 5103 1.315981 GCCAAGGAAAGCAGGTAGGC 61.316 60.000 0.00 0.00 0.00 3.93
4280 5108 0.752054 TTTGTGCCAAGGAAAGCAGG 59.248 50.000 0.00 0.00 40.28 4.85
4959 5955 0.968405 TTGGGATCTTGCTTTGTGGC 59.032 50.000 0.00 0.00 0.00 5.01
5160 6169 7.970384 TGTTCAATGTCGTTTGATTATAGGTC 58.030 34.615 0.00 0.00 35.64 3.85
5170 6179 7.627585 AAATGAAGATGTTCAATGTCGTTTG 57.372 32.000 9.61 0.00 45.88 2.93
5469 6501 6.024552 TGTAACCATGAATTCTCAAAAGCC 57.975 37.500 7.05 0.00 34.49 4.35
5629 6872 4.397417 GGAGAATTACAGCTGCAAAGACAT 59.603 41.667 15.27 0.00 0.00 3.06
5652 6895 2.674380 GCCTTCCAGGTGGTGCAG 60.674 66.667 0.00 0.00 37.80 4.41
5796 7043 6.147164 GCTAGCAAGAACACAACTACATACAA 59.853 38.462 10.63 0.00 0.00 2.41
6229 7476 5.995282 CCCACAACAACAGACTAACAGATAA 59.005 40.000 0.00 0.00 0.00 1.75
6274 7521 2.351706 TTGCCGGGAAAAACTACAGT 57.648 45.000 5.67 0.00 0.00 3.55
6275 7522 3.934457 ATTTGCCGGGAAAAACTACAG 57.066 42.857 25.57 0.00 0.00 2.74
6276 7523 4.321378 GCTTATTTGCCGGGAAAAACTACA 60.321 41.667 25.57 0.01 0.00 2.74
6277 7524 4.171005 GCTTATTTGCCGGGAAAAACTAC 58.829 43.478 25.57 10.25 0.00 2.73
6278 7525 3.827302 TGCTTATTTGCCGGGAAAAACTA 59.173 39.130 25.57 10.59 0.00 2.24
6279 7526 2.630580 TGCTTATTTGCCGGGAAAAACT 59.369 40.909 25.57 11.66 0.00 2.66
6280 7527 3.033368 TGCTTATTTGCCGGGAAAAAC 57.967 42.857 25.57 14.50 0.00 2.43
6286 7533 4.154195 GTGACTATATGCTTATTTGCCGGG 59.846 45.833 2.18 0.00 0.00 5.73
6359 7606 5.448089 GCTGTCTTTGGAACTTCGTTTTGTA 60.448 40.000 0.00 0.00 0.00 2.41
6613 7860 2.305052 ACAAGTTGGGGTAGGCTAGAAC 59.695 50.000 7.96 0.00 0.00 3.01
6627 7874 1.956477 CCCTCAGTCCCAAACAAGTTG 59.044 52.381 0.00 0.00 36.94 3.16
6647 7894 3.317993 AGGTGATACAACAACAACAAGGC 59.682 43.478 0.00 0.00 0.00 4.35
6648 7895 4.023193 GGAGGTGATACAACAACAACAAGG 60.023 45.833 0.00 0.00 0.00 3.61
6649 7896 4.023193 GGGAGGTGATACAACAACAACAAG 60.023 45.833 0.00 0.00 0.00 3.16
6650 7897 3.886505 GGGAGGTGATACAACAACAACAA 59.113 43.478 0.00 0.00 0.00 2.83
6651 7898 3.137544 AGGGAGGTGATACAACAACAACA 59.862 43.478 0.00 0.00 0.00 3.33
6652 7899 3.751518 AGGGAGGTGATACAACAACAAC 58.248 45.455 0.00 0.00 0.00 3.32
6653 7900 4.595781 ACTAGGGAGGTGATACAACAACAA 59.404 41.667 0.00 0.00 0.00 2.83
6654 7901 4.164981 ACTAGGGAGGTGATACAACAACA 58.835 43.478 0.00 0.00 0.00 3.33
6655 7902 4.820894 ACTAGGGAGGTGATACAACAAC 57.179 45.455 0.00 0.00 0.00 3.32
6656 7903 6.258354 TCTAACTAGGGAGGTGATACAACAA 58.742 40.000 0.00 0.00 0.00 2.83
6657 7904 5.834460 TCTAACTAGGGAGGTGATACAACA 58.166 41.667 0.00 0.00 0.00 3.33
6746 7994 1.562475 GGCTGGGGGTCATTACAAGTA 59.438 52.381 0.00 0.00 0.00 2.24
6751 7999 0.258774 ACATGGCTGGGGGTCATTAC 59.741 55.000 0.00 0.00 38.32 1.89
6843 8091 3.512724 CGTTCCTCTTGACCCTAAACCTA 59.487 47.826 0.00 0.00 0.00 3.08
6847 8095 2.332117 ACCGTTCCTCTTGACCCTAAA 58.668 47.619 0.00 0.00 0.00 1.85
6869 8117 5.811100 GGAACACTATGCCTGTTTCTACTAC 59.189 44.000 0.00 0.00 31.83 2.73
6894 8142 3.950395 GTCTCCTAATTTGGCTCAGCAAT 59.050 43.478 0.00 0.00 0.00 3.56
6968 8237 4.009370 ACAGTTCCCTCTACTTTTCAGC 57.991 45.455 0.00 0.00 0.00 4.26
6978 8247 2.224621 CCATGTGTGAACAGTTCCCTCT 60.225 50.000 10.93 0.00 0.00 3.69
6986 8255 1.881973 CAACCTCCCATGTGTGAACAG 59.118 52.381 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.