Multiple sequence alignment - TraesCS3B01G425700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G425700 chr3B 100.000 3137 0 0 1 3137 663572757 663575893 0.000000e+00 5794.0
1 TraesCS3B01G425700 chr3D 96.531 2133 45 14 224 2351 502157656 502159764 0.000000e+00 3502.0
2 TraesCS3B01G425700 chr3D 84.943 611 46 21 2537 3137 502159757 502160331 7.540000e-161 577.0
3 TraesCS3B01G425700 chr3D 87.283 173 19 2 1 172 428903464 428903294 8.880000e-46 195.0
4 TraesCS3B01G425700 chr3D 94.444 36 0 2 3102 3136 374276386 374276352 2.000000e-03 54.7
5 TraesCS3B01G425700 chr6B 90.898 1593 102 23 657 2234 659808662 659810226 0.000000e+00 2098.0
6 TraesCS3B01G425700 chr6B 92.534 509 38 0 1633 2141 659653863 659653355 0.000000e+00 730.0
7 TraesCS3B01G425700 chr6A 91.850 1497 88 18 660 2138 584757879 584759359 0.000000e+00 2058.0
8 TraesCS3B01G425700 chr6A 92.448 1430 87 11 740 2155 584695521 584694099 0.000000e+00 2023.0
9 TraesCS3B01G425700 chr6A 90.100 1505 117 17 739 2228 584593392 584594879 0.000000e+00 1925.0
10 TraesCS3B01G425700 chr6A 94.584 757 35 1 1391 2141 584717354 584716598 0.000000e+00 1166.0
11 TraesCS3B01G425700 chr6A 87.102 597 47 18 662 1244 584717945 584717365 0.000000e+00 649.0
12 TraesCS3B01G425700 chr6A 88.439 173 18 1 1 171 20519208 20519036 1.140000e-49 207.0
13 TraesCS3B01G425700 chr6A 81.081 148 20 7 2091 2235 584761581 584761723 9.200000e-21 111.0
14 TraesCS3B01G425700 chr6D 91.281 1514 101 20 662 2155 436637995 436639497 0.000000e+00 2036.0
15 TraesCS3B01G425700 chr6D 89.501 1524 106 21 739 2232 436420918 436422417 0.000000e+00 1879.0
16 TraesCS3B01G425700 chr6D 88.682 592 37 17 735 1312 436474444 436473869 0.000000e+00 695.0
17 TraesCS3B01G425700 chr3A 88.439 173 18 2 1 172 556983200 556983371 1.140000e-49 207.0
18 TraesCS3B01G425700 chrUn 87.571 177 16 3 1 172 415017710 415017535 1.910000e-47 200.0
19 TraesCS3B01G425700 chrUn 87.571 177 16 3 1 172 426326740 426326915 1.910000e-47 200.0
20 TraesCS3B01G425700 chr5D 87.571 177 16 3 1 172 564741876 564741701 1.910000e-47 200.0
21 TraesCS3B01G425700 chr5D 87.222 180 16 4 1 174 557369422 557369244 6.860000e-47 198.0
22 TraesCS3B01G425700 chr5D 87.006 177 17 3 1 172 557339329 557339154 8.880000e-46 195.0
23 TraesCS3B01G425700 chr5D 87.006 177 17 3 1 172 557348052 557347877 8.880000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G425700 chr3B 663572757 663575893 3136 False 5794.0 5794 100.0000 1 3137 1 chr3B.!!$F1 3136
1 TraesCS3B01G425700 chr3D 502157656 502160331 2675 False 2039.5 3502 90.7370 224 3137 2 chr3D.!!$F1 2913
2 TraesCS3B01G425700 chr6B 659808662 659810226 1564 False 2098.0 2098 90.8980 657 2234 1 chr6B.!!$F1 1577
3 TraesCS3B01G425700 chr6B 659653355 659653863 508 True 730.0 730 92.5340 1633 2141 1 chr6B.!!$R1 508
4 TraesCS3B01G425700 chr6A 584694099 584695521 1422 True 2023.0 2023 92.4480 740 2155 1 chr6A.!!$R2 1415
5 TraesCS3B01G425700 chr6A 584593392 584594879 1487 False 1925.0 1925 90.1000 739 2228 1 chr6A.!!$F1 1489
6 TraesCS3B01G425700 chr6A 584757879 584761723 3844 False 1084.5 2058 86.4655 660 2235 2 chr6A.!!$F2 1575
7 TraesCS3B01G425700 chr6A 584716598 584717945 1347 True 907.5 1166 90.8430 662 2141 2 chr6A.!!$R3 1479
8 TraesCS3B01G425700 chr6D 436637995 436639497 1502 False 2036.0 2036 91.2810 662 2155 1 chr6D.!!$F2 1493
9 TraesCS3B01G425700 chr6D 436420918 436422417 1499 False 1879.0 1879 89.5010 739 2232 1 chr6D.!!$F1 1493
10 TraesCS3B01G425700 chr6D 436473869 436474444 575 True 695.0 695 88.6820 735 1312 1 chr6D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.169230 CTGTTGAGAGGAGTCGGTCG 59.831 60.0 0.0 0.0 0.00 4.79 F
43 44 0.179045 GGTCGCTGTGGCAGGATATT 60.179 55.0 0.0 0.0 38.60 1.28 F
88 89 0.184692 TTGGTTGTGTGCATCCTGGA 59.815 50.0 0.0 0.0 35.89 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 1974 0.965866 TCTGGATGGCGAGACGTTCT 60.966 55.000 0.00 0.00 0.00 3.01 R
1960 2026 2.571757 CCTAGCAGCAACGTCGGA 59.428 61.111 0.00 0.00 0.00 4.55 R
2303 2432 3.562973 CCACCACATGCTAGCAATTCTAG 59.437 47.826 23.54 11.04 46.01 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.245159 TGTGTGCTTCTGTTGAGAGG 57.755 50.000 0.00 0.00 0.00 3.69
20 21 1.762370 TGTGTGCTTCTGTTGAGAGGA 59.238 47.619 0.00 0.00 0.00 3.71
21 22 2.224137 TGTGTGCTTCTGTTGAGAGGAG 60.224 50.000 0.00 0.00 0.00 3.69
22 23 2.042464 TGTGCTTCTGTTGAGAGGAGT 58.958 47.619 0.00 0.00 0.00 3.85
23 24 2.036475 TGTGCTTCTGTTGAGAGGAGTC 59.964 50.000 0.00 0.00 0.00 3.36
24 25 1.270826 TGCTTCTGTTGAGAGGAGTCG 59.729 52.381 0.00 0.00 0.00 4.18
25 26 1.403514 GCTTCTGTTGAGAGGAGTCGG 60.404 57.143 0.00 0.00 0.00 4.79
26 27 1.889829 CTTCTGTTGAGAGGAGTCGGT 59.110 52.381 0.00 0.00 0.00 4.69
27 28 1.535833 TCTGTTGAGAGGAGTCGGTC 58.464 55.000 0.00 0.00 0.00 4.79
28 29 0.169230 CTGTTGAGAGGAGTCGGTCG 59.831 60.000 0.00 0.00 0.00 4.79
29 30 1.153997 GTTGAGAGGAGTCGGTCGC 60.154 63.158 0.00 0.00 0.00 5.19
30 31 1.303398 TTGAGAGGAGTCGGTCGCT 60.303 57.895 0.00 0.00 0.00 4.93
31 32 1.587043 TTGAGAGGAGTCGGTCGCTG 61.587 60.000 0.00 0.00 0.00 5.18
32 33 2.034376 AGAGGAGTCGGTCGCTGT 59.966 61.111 0.00 0.00 0.00 4.40
33 34 2.179517 GAGGAGTCGGTCGCTGTG 59.820 66.667 0.00 0.00 0.00 3.66
34 35 3.343788 GAGGAGTCGGTCGCTGTGG 62.344 68.421 0.00 0.00 0.00 4.17
36 37 4.357947 GAGTCGGTCGCTGTGGCA 62.358 66.667 0.00 0.00 38.60 4.92
37 38 4.363990 AGTCGGTCGCTGTGGCAG 62.364 66.667 0.00 0.00 38.60 4.85
40 41 4.457496 CGGTCGCTGTGGCAGGAT 62.457 66.667 0.00 0.00 38.60 3.24
41 42 2.900273 GGTCGCTGTGGCAGGATA 59.100 61.111 0.00 0.00 38.60 2.59
42 43 1.447643 GGTCGCTGTGGCAGGATAT 59.552 57.895 0.00 0.00 38.60 1.63
43 44 0.179045 GGTCGCTGTGGCAGGATATT 60.179 55.000 0.00 0.00 38.60 1.28
44 45 1.668419 GTCGCTGTGGCAGGATATTT 58.332 50.000 0.00 0.00 38.60 1.40
45 46 2.017049 GTCGCTGTGGCAGGATATTTT 58.983 47.619 0.00 0.00 38.60 1.82
46 47 2.423538 GTCGCTGTGGCAGGATATTTTT 59.576 45.455 0.00 0.00 38.60 1.94
72 73 9.830975 TTCCTTTCTTTTAAATTTCTCCTTTGG 57.169 29.630 0.00 0.00 0.00 3.28
73 74 8.988060 TCCTTTCTTTTAAATTTCTCCTTTGGT 58.012 29.630 0.00 0.00 0.00 3.67
74 75 9.613428 CCTTTCTTTTAAATTTCTCCTTTGGTT 57.387 29.630 0.00 0.00 0.00 3.67
76 77 9.952030 TTTCTTTTAAATTTCTCCTTTGGTTGT 57.048 25.926 0.00 0.00 0.00 3.32
77 78 8.940768 TCTTTTAAATTTCTCCTTTGGTTGTG 57.059 30.769 0.00 0.00 0.00 3.33
78 79 8.536175 TCTTTTAAATTTCTCCTTTGGTTGTGT 58.464 29.630 0.00 0.00 0.00 3.72
79 80 8.485976 TTTTAAATTTCTCCTTTGGTTGTGTG 57.514 30.769 0.00 0.00 0.00 3.82
80 81 3.733443 ATTTCTCCTTTGGTTGTGTGC 57.267 42.857 0.00 0.00 0.00 4.57
81 82 2.136298 TTCTCCTTTGGTTGTGTGCA 57.864 45.000 0.00 0.00 0.00 4.57
82 83 2.363306 TCTCCTTTGGTTGTGTGCAT 57.637 45.000 0.00 0.00 0.00 3.96
83 84 2.229792 TCTCCTTTGGTTGTGTGCATC 58.770 47.619 0.00 0.00 0.00 3.91
84 85 1.270550 CTCCTTTGGTTGTGTGCATCC 59.729 52.381 0.00 0.00 35.54 3.51
85 86 1.133513 TCCTTTGGTTGTGTGCATCCT 60.134 47.619 0.00 0.00 35.89 3.24
86 87 1.000060 CCTTTGGTTGTGTGCATCCTG 60.000 52.381 0.00 0.00 35.89 3.86
87 88 1.000060 CTTTGGTTGTGTGCATCCTGG 60.000 52.381 0.00 0.00 35.89 4.45
88 89 0.184692 TTGGTTGTGTGCATCCTGGA 59.815 50.000 0.00 0.00 35.89 3.86
89 90 0.537143 TGGTTGTGTGCATCCTGGAC 60.537 55.000 0.00 0.00 39.30 4.02
90 91 1.577328 GGTTGTGTGCATCCTGGACG 61.577 60.000 0.00 0.00 41.94 4.79
91 92 0.884704 GTTGTGTGCATCCTGGACGT 60.885 55.000 0.00 0.00 41.94 4.34
92 93 0.602638 TTGTGTGCATCCTGGACGTC 60.603 55.000 7.13 7.13 41.94 4.34
93 94 1.293498 GTGTGCATCCTGGACGTCT 59.707 57.895 16.46 0.00 41.94 4.18
94 95 0.320771 GTGTGCATCCTGGACGTCTT 60.321 55.000 16.46 0.00 41.94 3.01
95 96 0.396435 TGTGCATCCTGGACGTCTTT 59.604 50.000 16.46 0.00 41.94 2.52
96 97 0.798776 GTGCATCCTGGACGTCTTTG 59.201 55.000 16.46 7.35 0.00 2.77
97 98 0.396435 TGCATCCTGGACGTCTTTGT 59.604 50.000 16.46 0.00 0.00 2.83
98 99 0.798776 GCATCCTGGACGTCTTTGTG 59.201 55.000 16.46 9.42 0.00 3.33
99 100 1.608025 GCATCCTGGACGTCTTTGTGA 60.608 52.381 16.46 5.95 0.00 3.58
100 101 2.069273 CATCCTGGACGTCTTTGTGAC 58.931 52.381 16.46 0.00 42.06 3.67
101 102 1.116308 TCCTGGACGTCTTTGTGACA 58.884 50.000 16.46 1.75 45.60 3.58
102 103 1.691976 TCCTGGACGTCTTTGTGACAT 59.308 47.619 16.46 0.00 45.60 3.06
103 104 2.069273 CCTGGACGTCTTTGTGACATC 58.931 52.381 16.46 0.00 45.60 3.06
104 105 2.289072 CCTGGACGTCTTTGTGACATCT 60.289 50.000 16.46 0.00 45.60 2.90
105 106 3.393800 CTGGACGTCTTTGTGACATCTT 58.606 45.455 16.46 0.00 45.60 2.40
106 107 3.130633 TGGACGTCTTTGTGACATCTTG 58.869 45.455 16.46 0.00 45.60 3.02
107 108 3.131396 GGACGTCTTTGTGACATCTTGT 58.869 45.455 16.46 0.00 45.60 3.16
108 109 3.560068 GGACGTCTTTGTGACATCTTGTT 59.440 43.478 16.46 0.00 45.60 2.83
109 110 4.518217 GACGTCTTTGTGACATCTTGTTG 58.482 43.478 8.70 0.00 45.60 3.33
110 111 3.312421 ACGTCTTTGTGACATCTTGTTGG 59.688 43.478 0.00 0.00 45.60 3.77
111 112 3.312421 CGTCTTTGTGACATCTTGTTGGT 59.688 43.478 0.00 0.00 45.60 3.67
112 113 4.601019 GTCTTTGTGACATCTTGTTGGTG 58.399 43.478 0.00 0.00 44.73 4.17
113 114 3.066621 TCTTTGTGACATCTTGTTGGTGC 59.933 43.478 0.00 0.00 0.00 5.01
114 115 2.049888 TGTGACATCTTGTTGGTGCA 57.950 45.000 0.00 0.00 0.00 4.57
115 116 1.948834 TGTGACATCTTGTTGGTGCAG 59.051 47.619 0.00 0.00 0.00 4.41
116 117 2.221169 GTGACATCTTGTTGGTGCAGA 58.779 47.619 0.00 0.00 0.00 4.26
117 118 2.225019 GTGACATCTTGTTGGTGCAGAG 59.775 50.000 0.00 0.00 0.00 3.35
118 119 2.104622 TGACATCTTGTTGGTGCAGAGA 59.895 45.455 0.00 0.00 0.00 3.10
119 120 2.481952 GACATCTTGTTGGTGCAGAGAC 59.518 50.000 0.00 0.00 0.00 3.36
120 121 2.105477 ACATCTTGTTGGTGCAGAGACT 59.895 45.455 0.00 0.00 0.00 3.24
121 122 2.245159 TCTTGTTGGTGCAGAGACTG 57.755 50.000 0.00 0.00 34.12 3.51
122 123 1.762370 TCTTGTTGGTGCAGAGACTGA 59.238 47.619 2.81 0.00 32.44 3.41
123 124 2.141517 CTTGTTGGTGCAGAGACTGAG 58.858 52.381 2.81 0.00 32.44 3.35
124 125 1.123077 TGTTGGTGCAGAGACTGAGT 58.877 50.000 2.81 0.00 32.44 3.41
125 126 2.316108 TGTTGGTGCAGAGACTGAGTA 58.684 47.619 2.81 0.00 32.44 2.59
126 127 2.899900 TGTTGGTGCAGAGACTGAGTAT 59.100 45.455 2.81 0.00 32.44 2.12
127 128 4.086457 TGTTGGTGCAGAGACTGAGTATA 58.914 43.478 2.81 0.00 32.44 1.47
128 129 4.526650 TGTTGGTGCAGAGACTGAGTATAA 59.473 41.667 2.81 0.00 32.44 0.98
129 130 5.187772 TGTTGGTGCAGAGACTGAGTATAAT 59.812 40.000 2.81 0.00 32.44 1.28
130 131 5.939764 TGGTGCAGAGACTGAGTATAATT 57.060 39.130 2.81 0.00 32.44 1.40
131 132 5.664457 TGGTGCAGAGACTGAGTATAATTG 58.336 41.667 2.81 0.00 32.44 2.32
132 133 5.422012 TGGTGCAGAGACTGAGTATAATTGA 59.578 40.000 2.81 0.00 32.44 2.57
133 134 6.098838 TGGTGCAGAGACTGAGTATAATTGAT 59.901 38.462 2.81 0.00 32.44 2.57
134 135 7.287696 TGGTGCAGAGACTGAGTATAATTGATA 59.712 37.037 2.81 0.00 32.44 2.15
135 136 8.310382 GGTGCAGAGACTGAGTATAATTGATAT 58.690 37.037 2.81 0.00 32.44 1.63
136 137 9.352784 GTGCAGAGACTGAGTATAATTGATATC 57.647 37.037 2.81 0.00 32.44 1.63
137 138 9.306777 TGCAGAGACTGAGTATAATTGATATCT 57.693 33.333 3.98 0.00 32.44 1.98
138 139 9.787532 GCAGAGACTGAGTATAATTGATATCTC 57.212 37.037 3.98 0.00 32.44 2.75
142 143 8.735315 AGACTGAGTATAATTGATATCTCCACG 58.265 37.037 3.98 0.00 0.00 4.94
143 144 8.637196 ACTGAGTATAATTGATATCTCCACGA 57.363 34.615 3.98 0.00 0.00 4.35
144 145 9.249053 ACTGAGTATAATTGATATCTCCACGAT 57.751 33.333 3.98 0.00 36.11 3.73
160 161 9.676129 ATCTCCACGATATTATTATATTCCCCT 57.324 33.333 0.00 0.00 0.00 4.79
161 162 9.502035 TCTCCACGATATTATTATATTCCCCTT 57.498 33.333 0.00 0.00 0.00 3.95
164 165 9.899661 CCACGATATTATTATATTCCCCTTTCA 57.100 33.333 0.00 0.00 0.00 2.69
191 192 7.929941 AAAAAGTCATGGGCAAACTTTTAAA 57.070 28.000 17.61 0.00 46.84 1.52
192 193 7.929941 AAAAGTCATGGGCAAACTTTTAAAA 57.070 28.000 16.40 0.00 46.13 1.52
193 194 7.929941 AAAGTCATGGGCAAACTTTTAAAAA 57.070 28.000 1.66 0.00 39.54 1.94
194 195 8.518430 AAAGTCATGGGCAAACTTTTAAAAAT 57.482 26.923 1.66 0.00 39.54 1.82
195 196 9.620259 AAAGTCATGGGCAAACTTTTAAAAATA 57.380 25.926 1.66 0.00 39.54 1.40
196 197 8.601845 AGTCATGGGCAAACTTTTAAAAATAC 57.398 30.769 1.66 0.00 0.00 1.89
197 198 7.659799 AGTCATGGGCAAACTTTTAAAAATACC 59.340 33.333 1.66 0.23 0.00 2.73
198 199 6.937465 TCATGGGCAAACTTTTAAAAATACCC 59.063 34.615 13.40 13.40 0.00 3.69
199 200 6.248569 TGGGCAAACTTTTAAAAATACCCA 57.751 33.333 16.79 16.79 41.23 4.51
200 201 6.659824 TGGGCAAACTTTTAAAAATACCCAA 58.340 32.000 17.75 7.64 40.57 4.12
201 202 7.290813 TGGGCAAACTTTTAAAAATACCCAAT 58.709 30.769 17.75 0.00 40.57 3.16
202 203 7.229506 TGGGCAAACTTTTAAAAATACCCAATG 59.770 33.333 17.75 1.96 40.57 2.82
203 204 7.445707 GGGCAAACTTTTAAAAATACCCAATGA 59.554 33.333 14.60 0.00 33.65 2.57
204 205 8.841300 GGCAAACTTTTAAAAATACCCAATGAA 58.159 29.630 1.66 0.00 0.00 2.57
205 206 9.658475 GCAAACTTTTAAAAATACCCAATGAAC 57.342 29.630 1.66 0.00 0.00 3.18
598 601 2.557490 GGAGTCTCAACGGACTTGTACT 59.443 50.000 1.47 0.00 45.32 2.73
617 620 3.825328 ACTAGAGGCAAATTGCTATGGG 58.175 45.455 18.04 8.28 44.28 4.00
653 656 3.838795 CGTCGTGCTACGCCTTGC 61.839 66.667 4.15 0.00 42.21 4.01
715 726 1.946768 CATGTAGCATTGGGTTACGGG 59.053 52.381 0.00 0.00 36.10 5.28
838 871 3.193267 CCATTGATCCATCCAACACGTTT 59.807 43.478 0.00 0.00 0.00 3.60
846 885 2.712539 CAACACGTTTGCTCCGCA 59.287 55.556 0.00 0.00 36.47 5.69
881 923 0.657312 CGACAACAGCAAGCACAGAA 59.343 50.000 0.00 0.00 0.00 3.02
916 958 2.109799 CCCGCTCTCGCATCCATT 59.890 61.111 0.00 0.00 35.30 3.16
959 1010 1.000771 CAGTCTCCCGTCTCCCTCA 60.001 63.158 0.00 0.00 0.00 3.86
1960 2026 0.108019 GGACACTTGGTTCCGGAACT 59.892 55.000 38.59 23.09 40.94 3.01
2264 2383 8.451908 AGCAAAGTTAATATATTGTGGAGGTC 57.548 34.615 8.28 0.00 0.00 3.85
2266 2385 8.682710 GCAAAGTTAATATATTGTGGAGGTCAA 58.317 33.333 8.28 0.00 0.00 3.18
2360 4421 2.298411 GGCATTGATGGCGAAAATGT 57.702 45.000 1.59 0.00 43.58 2.71
2361 4422 2.620242 GGCATTGATGGCGAAAATGTT 58.380 42.857 1.59 0.00 43.58 2.71
2362 4423 3.779759 GGCATTGATGGCGAAAATGTTA 58.220 40.909 1.59 0.00 43.58 2.41
2363 4424 3.798337 GGCATTGATGGCGAAAATGTTAG 59.202 43.478 1.59 0.00 43.58 2.34
2364 4425 4.439974 GGCATTGATGGCGAAAATGTTAGA 60.440 41.667 1.59 0.00 43.58 2.10
2365 4426 4.500477 GCATTGATGGCGAAAATGTTAGAC 59.500 41.667 8.57 0.00 34.48 2.59
2366 4427 5.677091 GCATTGATGGCGAAAATGTTAGACT 60.677 40.000 8.57 0.00 34.48 3.24
2367 4428 5.545658 TTGATGGCGAAAATGTTAGACTC 57.454 39.130 0.00 0.00 0.00 3.36
2368 4429 4.574892 TGATGGCGAAAATGTTAGACTCA 58.425 39.130 0.00 0.00 0.00 3.41
2369 4430 4.391830 TGATGGCGAAAATGTTAGACTCAC 59.608 41.667 0.00 0.00 0.00 3.51
2370 4431 2.734606 TGGCGAAAATGTTAGACTCACG 59.265 45.455 0.00 0.00 0.00 4.35
2371 4432 2.991190 GGCGAAAATGTTAGACTCACGA 59.009 45.455 0.00 0.00 0.00 4.35
2372 4433 3.430895 GGCGAAAATGTTAGACTCACGAA 59.569 43.478 0.00 0.00 0.00 3.85
2373 4434 4.434330 GGCGAAAATGTTAGACTCACGAAG 60.434 45.833 0.00 0.00 0.00 3.79
2375 4436 5.344128 GCGAAAATGTTAGACTCACGAAGTA 59.656 40.000 0.00 0.00 41.61 2.24
2376 4437 6.034683 GCGAAAATGTTAGACTCACGAAGTAT 59.965 38.462 0.00 0.00 41.61 2.12
2377 4438 7.601775 CGAAAATGTTAGACTCACGAAGTATC 58.398 38.462 0.00 0.00 41.61 2.24
2378 4439 7.272731 CGAAAATGTTAGACTCACGAAGTATCA 59.727 37.037 0.00 0.00 41.61 2.15
2379 4440 7.813852 AAATGTTAGACTCACGAAGTATCAC 57.186 36.000 0.00 0.00 41.61 3.06
2380 4441 4.966249 TGTTAGACTCACGAAGTATCACG 58.034 43.478 0.00 0.00 41.61 4.35
2381 4442 4.142752 TGTTAGACTCACGAAGTATCACGG 60.143 45.833 0.00 0.00 41.61 4.94
2382 4443 1.743958 AGACTCACGAAGTATCACGGG 59.256 52.381 0.00 0.00 41.61 5.28
2383 4444 0.815734 ACTCACGAAGTATCACGGGG 59.184 55.000 0.00 0.00 41.61 5.73
2384 4445 0.527817 CTCACGAAGTATCACGGGGC 60.528 60.000 0.00 0.00 41.61 5.80
2385 4446 0.968901 TCACGAAGTATCACGGGGCT 60.969 55.000 0.00 0.00 41.61 5.19
2386 4447 0.108329 CACGAAGTATCACGGGGCTT 60.108 55.000 0.00 0.00 41.61 4.35
2387 4448 0.611714 ACGAAGTATCACGGGGCTTT 59.388 50.000 0.00 0.00 41.94 3.51
2388 4449 1.002773 ACGAAGTATCACGGGGCTTTT 59.997 47.619 0.00 0.00 41.94 2.27
2389 4450 2.081462 CGAAGTATCACGGGGCTTTTT 58.919 47.619 0.00 0.00 0.00 1.94
2407 4468 4.882842 TTTTTCTAACAAATCTGCCCCC 57.117 40.909 0.00 0.00 0.00 5.40
2456 4517 4.554036 GTGCGGGCCCATCCTCTC 62.554 72.222 24.92 2.03 34.39 3.20
2460 4521 2.768344 GGGCCCATCCTCTCCGAA 60.768 66.667 19.95 0.00 34.39 4.30
2461 4522 2.375345 GGGCCCATCCTCTCCGAAA 61.375 63.158 19.95 0.00 34.39 3.46
2462 4523 1.153147 GGCCCATCCTCTCCGAAAC 60.153 63.158 0.00 0.00 0.00 2.78
2463 4524 1.521681 GCCCATCCTCTCCGAAACG 60.522 63.158 0.00 0.00 0.00 3.60
2464 4525 1.956629 GCCCATCCTCTCCGAAACGA 61.957 60.000 0.00 0.00 0.00 3.85
2465 4526 0.753262 CCCATCCTCTCCGAAACGAT 59.247 55.000 0.00 0.00 0.00 3.73
2466 4527 1.961394 CCCATCCTCTCCGAAACGATA 59.039 52.381 0.00 0.00 0.00 2.92
2467 4528 2.029828 CCCATCCTCTCCGAAACGATAG 60.030 54.545 0.00 0.00 46.19 2.08
2483 4544 4.939052 CGATAGTTCTATTGGTCCACCT 57.061 45.455 0.00 0.00 36.82 4.00
2484 4545 4.872664 CGATAGTTCTATTGGTCCACCTC 58.127 47.826 0.00 0.00 36.82 3.85
2485 4546 4.341235 CGATAGTTCTATTGGTCCACCTCA 59.659 45.833 0.00 0.00 36.82 3.86
2486 4547 5.163447 CGATAGTTCTATTGGTCCACCTCAA 60.163 44.000 0.00 0.00 36.82 3.02
2487 4548 4.287766 AGTTCTATTGGTCCACCTCAAC 57.712 45.455 0.00 0.00 36.82 3.18
2488 4549 3.910627 AGTTCTATTGGTCCACCTCAACT 59.089 43.478 0.00 0.00 36.82 3.16
2489 4550 5.091552 AGTTCTATTGGTCCACCTCAACTA 58.908 41.667 0.00 0.00 36.82 2.24
2490 4551 5.046520 AGTTCTATTGGTCCACCTCAACTAC 60.047 44.000 0.00 0.00 36.82 2.73
2491 4552 4.422057 TCTATTGGTCCACCTCAACTACA 58.578 43.478 0.00 0.00 36.82 2.74
2492 4553 2.922740 TTGGTCCACCTCAACTACAC 57.077 50.000 0.00 0.00 36.82 2.90
2493 4554 1.053424 TGGTCCACCTCAACTACACC 58.947 55.000 0.00 0.00 36.82 4.16
2494 4555 0.037605 GGTCCACCTCAACTACACCG 60.038 60.000 0.00 0.00 0.00 4.94
2495 4556 0.677842 GTCCACCTCAACTACACCGT 59.322 55.000 0.00 0.00 0.00 4.83
2496 4557 0.677288 TCCACCTCAACTACACCGTG 59.323 55.000 0.00 0.00 0.00 4.94
2497 4558 0.677288 CCACCTCAACTACACCGTGA 59.323 55.000 5.28 0.00 0.00 4.35
2498 4559 1.069513 CCACCTCAACTACACCGTGAA 59.930 52.381 5.28 0.00 0.00 3.18
2499 4560 2.132762 CACCTCAACTACACCGTGAAC 58.867 52.381 5.28 0.00 0.00 3.18
2500 4561 2.037144 ACCTCAACTACACCGTGAACT 58.963 47.619 5.28 0.00 0.00 3.01
2501 4562 2.035576 ACCTCAACTACACCGTGAACTC 59.964 50.000 5.28 0.00 0.00 3.01
2502 4563 2.296471 CCTCAACTACACCGTGAACTCT 59.704 50.000 5.28 0.00 0.00 3.24
2503 4564 3.309388 CTCAACTACACCGTGAACTCTG 58.691 50.000 5.28 0.00 0.00 3.35
2504 4565 2.691526 TCAACTACACCGTGAACTCTGT 59.308 45.455 5.28 0.00 0.00 3.41
2505 4566 3.884693 TCAACTACACCGTGAACTCTGTA 59.115 43.478 5.28 0.00 0.00 2.74
2506 4567 4.521639 TCAACTACACCGTGAACTCTGTAT 59.478 41.667 5.28 0.00 0.00 2.29
2507 4568 5.706833 TCAACTACACCGTGAACTCTGTATA 59.293 40.000 5.28 0.00 0.00 1.47
2508 4569 6.207221 TCAACTACACCGTGAACTCTGTATAA 59.793 38.462 5.28 0.00 0.00 0.98
2509 4570 6.579666 ACTACACCGTGAACTCTGTATAAA 57.420 37.500 5.28 0.00 0.00 1.40
2510 4571 6.985117 ACTACACCGTGAACTCTGTATAAAA 58.015 36.000 5.28 0.00 0.00 1.52
2511 4572 7.609056 ACTACACCGTGAACTCTGTATAAAAT 58.391 34.615 5.28 0.00 0.00 1.82
2512 4573 6.963049 ACACCGTGAACTCTGTATAAAATC 57.037 37.500 5.28 0.00 0.00 2.17
2513 4574 6.460781 ACACCGTGAACTCTGTATAAAATCA 58.539 36.000 5.28 0.00 0.00 2.57
2514 4575 6.367969 ACACCGTGAACTCTGTATAAAATCAC 59.632 38.462 5.28 0.00 34.01 3.06
2515 4576 5.873164 ACCGTGAACTCTGTATAAAATCACC 59.127 40.000 0.00 0.00 33.85 4.02
2516 4577 5.293569 CCGTGAACTCTGTATAAAATCACCC 59.706 44.000 0.00 0.00 33.85 4.61
2517 4578 5.293569 CGTGAACTCTGTATAAAATCACCCC 59.706 44.000 0.00 0.00 33.85 4.95
2518 4579 5.293569 GTGAACTCTGTATAAAATCACCCCG 59.706 44.000 0.00 0.00 31.81 5.73
2519 4580 5.046159 TGAACTCTGTATAAAATCACCCCGT 60.046 40.000 0.00 0.00 0.00 5.28
2520 4581 5.431179 ACTCTGTATAAAATCACCCCGTT 57.569 39.130 0.00 0.00 0.00 4.44
2521 4582 5.183228 ACTCTGTATAAAATCACCCCGTTG 58.817 41.667 0.00 0.00 0.00 4.10
2522 4583 5.046159 ACTCTGTATAAAATCACCCCGTTGA 60.046 40.000 0.00 0.00 0.00 3.18
2523 4584 5.996644 TCTGTATAAAATCACCCCGTTGAT 58.003 37.500 0.00 0.00 37.87 2.57
2524 4585 6.419791 TCTGTATAAAATCACCCCGTTGATT 58.580 36.000 0.00 0.00 46.18 2.57
2529 4590 2.799126 ATCACCCCGTTGATTTAGCA 57.201 45.000 0.00 0.00 31.87 3.49
2530 4591 2.107950 TCACCCCGTTGATTTAGCAG 57.892 50.000 0.00 0.00 0.00 4.24
2531 4592 1.349688 TCACCCCGTTGATTTAGCAGT 59.650 47.619 0.00 0.00 0.00 4.40
2532 4593 2.568062 TCACCCCGTTGATTTAGCAGTA 59.432 45.455 0.00 0.00 0.00 2.74
2533 4594 2.676342 CACCCCGTTGATTTAGCAGTAC 59.324 50.000 0.00 0.00 0.00 2.73
2534 4595 2.570302 ACCCCGTTGATTTAGCAGTACT 59.430 45.455 0.00 0.00 0.00 2.73
2535 4596 3.008704 ACCCCGTTGATTTAGCAGTACTT 59.991 43.478 0.00 0.00 0.00 2.24
2536 4597 3.621715 CCCCGTTGATTTAGCAGTACTTC 59.378 47.826 0.00 0.00 0.00 3.01
2544 4605 7.558161 TGATTTAGCAGTACTTCATTGATGG 57.442 36.000 0.00 0.00 0.00 3.51
2559 4620 1.985159 TGATGGTGCCTAGTTGGAAGT 59.015 47.619 0.00 0.00 38.35 3.01
2568 4629 0.970640 TAGTTGGAAGTGTGCGGCTA 59.029 50.000 0.00 0.00 0.00 3.93
2582 4643 2.412605 GGCTACCTGACGACGGTAT 58.587 57.895 0.00 0.00 36.49 2.73
2583 4644 0.030369 GGCTACCTGACGACGGTATG 59.970 60.000 0.00 5.62 36.49 2.39
2585 4646 1.533338 GCTACCTGACGACGGTATGTG 60.533 57.143 0.00 1.46 36.49 3.21
2586 4647 0.452987 TACCTGACGACGGTATGTGC 59.547 55.000 0.00 0.00 35.98 4.57
2587 4648 1.214325 CCTGACGACGGTATGTGCA 59.786 57.895 0.00 0.00 0.00 4.57
2588 4649 0.179111 CCTGACGACGGTATGTGCAT 60.179 55.000 0.00 0.00 0.00 3.96
2590 4651 0.245266 TGACGACGGTATGTGCATGT 59.755 50.000 0.00 0.00 0.00 3.21
2592 4653 2.100087 TGACGACGGTATGTGCATGTAT 59.900 45.455 0.00 0.00 0.00 2.29
2593 4654 2.469826 ACGACGGTATGTGCATGTATG 58.530 47.619 0.00 0.00 0.00 2.39
2613 4674 6.549736 TGTATGTCAGTGTGGCAGTAGTATAT 59.450 38.462 0.00 0.00 34.38 0.86
2642 4703 4.015872 TCCTTTAAACCAAGCGACTCAT 57.984 40.909 0.00 0.00 0.00 2.90
2649 4710 1.291184 CCAAGCGACTCATGCAACGA 61.291 55.000 0.00 0.00 33.85 3.85
2657 4718 1.800586 ACTCATGCAACGACACATGAC 59.199 47.619 0.00 0.00 45.79 3.06
2664 4725 2.543848 GCAACGACACATGACAGAAAGA 59.456 45.455 0.00 0.00 0.00 2.52
2678 4739 4.460263 ACAGAAAGAACACACATGCCTAA 58.540 39.130 0.00 0.00 0.00 2.69
2692 4753 2.235016 TGCCTAAAAAGGAATGTGCGT 58.765 42.857 0.00 0.00 0.00 5.24
2694 4755 2.030274 GCCTAAAAAGGAATGTGCGTGT 60.030 45.455 0.00 0.00 0.00 4.49
2695 4756 3.552068 GCCTAAAAAGGAATGTGCGTGTT 60.552 43.478 0.00 0.00 0.00 3.32
2720 4781 2.839486 TCAGTCGGCAACAAAGAGAT 57.161 45.000 0.00 0.00 0.00 2.75
2721 4782 3.953712 TCAGTCGGCAACAAAGAGATA 57.046 42.857 0.00 0.00 0.00 1.98
2758 4819 6.776116 CACCATAGGGATACACAGAGTAACTA 59.224 42.308 0.00 0.00 35.19 2.24
2773 4834 1.808411 AACTACACCGCATCAACTGG 58.192 50.000 0.00 0.00 0.00 4.00
2785 4846 0.750249 TCAACTGGCGAGTCAGAACA 59.250 50.000 12.02 0.00 38.11 3.18
2790 4851 1.998315 CTGGCGAGTCAGAACAATCAG 59.002 52.381 0.00 0.00 36.93 2.90
2816 4878 0.030235 GGAAAACACAGGTCAACCGC 59.970 55.000 0.00 0.00 42.08 5.68
2824 4886 2.266055 GGTCAACCGCCTCCTGAG 59.734 66.667 0.00 0.00 0.00 3.35
2837 4899 3.922171 CTCCTGAGGATAGGCAAAACT 57.078 47.619 0.00 0.00 37.76 2.66
2838 4900 4.227864 CTCCTGAGGATAGGCAAAACTT 57.772 45.455 0.00 0.00 37.76 2.66
2839 4901 4.195416 CTCCTGAGGATAGGCAAAACTTC 58.805 47.826 0.00 0.00 37.76 3.01
2840 4902 3.054361 TCCTGAGGATAGGCAAAACTTCC 60.054 47.826 0.00 0.00 37.76 3.46
2841 4903 3.282885 CTGAGGATAGGCAAAACTTCCC 58.717 50.000 0.00 0.00 0.00 3.97
2842 4904 2.919602 TGAGGATAGGCAAAACTTCCCT 59.080 45.455 0.00 0.00 0.00 4.20
2843 4905 4.108570 TGAGGATAGGCAAAACTTCCCTA 58.891 43.478 0.00 0.00 35.81 3.53
2844 4906 4.538490 TGAGGATAGGCAAAACTTCCCTAA 59.462 41.667 0.00 0.00 35.06 2.69
2845 4907 5.014755 TGAGGATAGGCAAAACTTCCCTAAA 59.985 40.000 0.00 0.00 35.06 1.85
2846 4908 5.899278 AGGATAGGCAAAACTTCCCTAAAA 58.101 37.500 0.00 0.00 35.06 1.52
2847 4909 6.319715 AGGATAGGCAAAACTTCCCTAAAAA 58.680 36.000 0.00 0.00 35.06 1.94
2848 4910 6.437477 AGGATAGGCAAAACTTCCCTAAAAAG 59.563 38.462 0.00 0.00 35.06 2.27
2849 4911 6.436218 GGATAGGCAAAACTTCCCTAAAAAGA 59.564 38.462 0.00 0.00 35.06 2.52
2876 4938 0.248866 AGGCAAAACCAAAACGAGCG 60.249 50.000 0.00 0.00 43.14 5.03
2897 4959 4.060900 CGAGCCAATCATAATAGCACACT 58.939 43.478 0.00 0.00 0.00 3.55
2898 4960 5.230182 CGAGCCAATCATAATAGCACACTA 58.770 41.667 0.00 0.00 0.00 2.74
2901 4963 7.502120 AGCCAATCATAATAGCACACTAAAG 57.498 36.000 0.00 0.00 30.45 1.85
2913 4975 6.442513 AGCACACTAAAGAAATGCTAATCC 57.557 37.500 0.00 0.00 44.59 3.01
2955 5018 3.160777 CGAACCGCTGTTTATCCTAGT 57.839 47.619 0.00 0.00 33.97 2.57
2956 5019 4.297299 CGAACCGCTGTTTATCCTAGTA 57.703 45.455 0.00 0.00 33.97 1.82
2959 5022 2.697229 ACCGCTGTTTATCCTAGTACCC 59.303 50.000 0.00 0.00 0.00 3.69
2971 5041 6.903340 ATCCTAGTACCCAGTAAAACCAAT 57.097 37.500 0.00 0.00 0.00 3.16
2975 5045 7.052248 CCTAGTACCCAGTAAAACCAATAAGG 58.948 42.308 0.00 0.00 45.67 2.69
2998 5068 4.705337 AAAGAACGCAACCACAAACTAA 57.295 36.364 0.00 0.00 0.00 2.24
3007 5077 4.682050 GCAACCACAAACTAAACATGGGTT 60.682 41.667 0.00 0.00 39.43 4.11
3010 5080 3.244044 CCACAAACTAAACATGGGTTGGG 60.244 47.826 0.00 0.00 37.30 4.12
3016 5086 5.327737 ACTAAACATGGGTTGGGTTAAGA 57.672 39.130 0.00 0.00 37.30 2.10
3048 5118 8.091449 TGGTGGTATTGTTAATTGAAATTGTCC 58.909 33.333 0.00 0.00 0.00 4.02
3066 5136 2.694109 GTCCATAGATATACGCCCTCCC 59.306 54.545 0.00 0.00 0.00 4.30
3067 5137 1.681793 CCATAGATATACGCCCTCCCG 59.318 57.143 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.682836 GACTCCTCTCAACAGAAGCAC 58.317 52.381 0.00 0.00 0.00 4.40
4 5 1.270826 CGACTCCTCTCAACAGAAGCA 59.729 52.381 0.00 0.00 0.00 3.91
5 6 1.403514 CCGACTCCTCTCAACAGAAGC 60.404 57.143 0.00 0.00 0.00 3.86
6 7 1.889829 ACCGACTCCTCTCAACAGAAG 59.110 52.381 0.00 0.00 0.00 2.85
7 8 1.887198 GACCGACTCCTCTCAACAGAA 59.113 52.381 0.00 0.00 0.00 3.02
8 9 1.535833 GACCGACTCCTCTCAACAGA 58.464 55.000 0.00 0.00 0.00 3.41
9 10 0.169230 CGACCGACTCCTCTCAACAG 59.831 60.000 0.00 0.00 0.00 3.16
10 11 1.863662 GCGACCGACTCCTCTCAACA 61.864 60.000 0.00 0.00 0.00 3.33
11 12 1.153997 GCGACCGACTCCTCTCAAC 60.154 63.158 0.00 0.00 0.00 3.18
12 13 1.303398 AGCGACCGACTCCTCTCAA 60.303 57.895 0.00 0.00 0.00 3.02
13 14 2.041115 CAGCGACCGACTCCTCTCA 61.041 63.158 0.00 0.00 0.00 3.27
14 15 2.041686 ACAGCGACCGACTCCTCTC 61.042 63.158 0.00 0.00 0.00 3.20
15 16 2.034376 ACAGCGACCGACTCCTCT 59.966 61.111 0.00 0.00 0.00 3.69
16 17 2.179517 CACAGCGACCGACTCCTC 59.820 66.667 0.00 0.00 0.00 3.71
17 18 3.374402 CCACAGCGACCGACTCCT 61.374 66.667 0.00 0.00 0.00 3.69
19 20 4.357947 TGCCACAGCGACCGACTC 62.358 66.667 0.00 0.00 44.31 3.36
20 21 4.363990 CTGCCACAGCGACCGACT 62.364 66.667 0.00 0.00 44.31 4.18
23 24 2.369257 ATATCCTGCCACAGCGACCG 62.369 60.000 0.00 0.00 44.31 4.79
24 25 0.179045 AATATCCTGCCACAGCGACC 60.179 55.000 0.00 0.00 44.31 4.79
25 26 1.668419 AAATATCCTGCCACAGCGAC 58.332 50.000 0.00 0.00 44.31 5.19
26 27 2.418368 AAAATATCCTGCCACAGCGA 57.582 45.000 0.00 0.00 44.31 4.93
46 47 9.830975 CCAAAGGAGAAATTTAAAAGAAAGGAA 57.169 29.630 0.00 0.00 0.00 3.36
47 48 8.988060 ACCAAAGGAGAAATTTAAAAGAAAGGA 58.012 29.630 0.00 0.00 0.00 3.36
48 49 9.613428 AACCAAAGGAGAAATTTAAAAGAAAGG 57.387 29.630 0.00 0.00 0.00 3.11
50 51 9.952030 ACAACCAAAGGAGAAATTTAAAAGAAA 57.048 25.926 0.00 0.00 0.00 2.52
51 52 9.377312 CACAACCAAAGGAGAAATTTAAAAGAA 57.623 29.630 0.00 0.00 0.00 2.52
52 53 8.536175 ACACAACCAAAGGAGAAATTTAAAAGA 58.464 29.630 0.00 0.00 0.00 2.52
53 54 8.603181 CACACAACCAAAGGAGAAATTTAAAAG 58.397 33.333 0.00 0.00 0.00 2.27
54 55 7.065204 GCACACAACCAAAGGAGAAATTTAAAA 59.935 33.333 0.00 0.00 0.00 1.52
55 56 6.536941 GCACACAACCAAAGGAGAAATTTAAA 59.463 34.615 0.00 0.00 0.00 1.52
56 57 6.045955 GCACACAACCAAAGGAGAAATTTAA 58.954 36.000 0.00 0.00 0.00 1.52
57 58 5.127845 TGCACACAACCAAAGGAGAAATTTA 59.872 36.000 0.00 0.00 0.00 1.40
58 59 4.081198 TGCACACAACCAAAGGAGAAATTT 60.081 37.500 0.00 0.00 0.00 1.82
59 60 3.450457 TGCACACAACCAAAGGAGAAATT 59.550 39.130 0.00 0.00 0.00 1.82
60 61 3.030291 TGCACACAACCAAAGGAGAAAT 58.970 40.909 0.00 0.00 0.00 2.17
61 62 2.451490 TGCACACAACCAAAGGAGAAA 58.549 42.857 0.00 0.00 0.00 2.52
62 63 2.136298 TGCACACAACCAAAGGAGAA 57.864 45.000 0.00 0.00 0.00 2.87
63 64 2.229792 GATGCACACAACCAAAGGAGA 58.770 47.619 0.00 0.00 0.00 3.71
64 65 1.270550 GGATGCACACAACCAAAGGAG 59.729 52.381 0.00 0.00 38.58 3.69
65 66 1.133513 AGGATGCACACAACCAAAGGA 60.134 47.619 0.00 0.00 41.12 3.36
66 67 1.000060 CAGGATGCACACAACCAAAGG 60.000 52.381 0.00 0.00 41.12 3.11
67 68 1.000060 CCAGGATGCACACAACCAAAG 60.000 52.381 0.00 0.00 41.12 2.77
68 69 1.039068 CCAGGATGCACACAACCAAA 58.961 50.000 0.00 0.00 41.12 3.28
69 70 0.184692 TCCAGGATGCACACAACCAA 59.815 50.000 0.00 0.00 41.12 3.67
70 71 0.537143 GTCCAGGATGCACACAACCA 60.537 55.000 0.00 0.00 41.12 3.67
71 72 1.577328 CGTCCAGGATGCACACAACC 61.577 60.000 0.00 0.00 39.00 3.77
72 73 0.884704 ACGTCCAGGATGCACACAAC 60.885 55.000 8.79 0.00 31.97 3.32
73 74 0.602638 GACGTCCAGGATGCACACAA 60.603 55.000 8.79 0.00 31.97 3.33
74 75 1.005037 GACGTCCAGGATGCACACA 60.005 57.895 8.79 0.00 31.97 3.72
75 76 0.320771 AAGACGTCCAGGATGCACAC 60.321 55.000 13.01 0.00 31.97 3.82
76 77 0.396435 AAAGACGTCCAGGATGCACA 59.604 50.000 13.01 0.00 31.97 4.57
77 78 0.798776 CAAAGACGTCCAGGATGCAC 59.201 55.000 13.01 3.61 31.97 4.57
78 79 0.396435 ACAAAGACGTCCAGGATGCA 59.604 50.000 13.01 0.00 31.97 3.96
79 80 0.798776 CACAAAGACGTCCAGGATGC 59.201 55.000 13.01 1.95 31.97 3.91
80 81 2.069273 GTCACAAAGACGTCCAGGATG 58.931 52.381 13.01 7.18 37.53 3.51
81 82 2.457366 GTCACAAAGACGTCCAGGAT 57.543 50.000 13.01 0.00 37.53 3.24
82 83 3.980583 GTCACAAAGACGTCCAGGA 57.019 52.632 13.01 0.22 37.53 3.86
91 92 3.066621 GCACCAACAAGATGTCACAAAGA 59.933 43.478 0.00 0.00 0.00 2.52
92 93 3.181488 TGCACCAACAAGATGTCACAAAG 60.181 43.478 0.00 0.00 0.00 2.77
93 94 2.757314 TGCACCAACAAGATGTCACAAA 59.243 40.909 0.00 0.00 0.00 2.83
94 95 2.358582 CTGCACCAACAAGATGTCACAA 59.641 45.455 0.00 0.00 0.00 3.33
95 96 1.948834 CTGCACCAACAAGATGTCACA 59.051 47.619 0.00 0.00 0.00 3.58
96 97 2.221169 TCTGCACCAACAAGATGTCAC 58.779 47.619 0.00 0.00 0.00 3.67
97 98 2.104622 TCTCTGCACCAACAAGATGTCA 59.895 45.455 0.00 0.00 0.00 3.58
98 99 2.481952 GTCTCTGCACCAACAAGATGTC 59.518 50.000 0.00 0.00 0.00 3.06
99 100 2.105477 AGTCTCTGCACCAACAAGATGT 59.895 45.455 0.00 0.00 0.00 3.06
100 101 2.483106 CAGTCTCTGCACCAACAAGATG 59.517 50.000 0.00 0.00 0.00 2.90
101 102 2.369860 TCAGTCTCTGCACCAACAAGAT 59.630 45.455 0.00 0.00 0.00 2.40
102 103 1.762370 TCAGTCTCTGCACCAACAAGA 59.238 47.619 0.00 0.00 0.00 3.02
103 104 2.141517 CTCAGTCTCTGCACCAACAAG 58.858 52.381 0.00 0.00 0.00 3.16
104 105 1.486310 ACTCAGTCTCTGCACCAACAA 59.514 47.619 0.00 0.00 0.00 2.83
105 106 1.123077 ACTCAGTCTCTGCACCAACA 58.877 50.000 0.00 0.00 0.00 3.33
106 107 3.601443 ATACTCAGTCTCTGCACCAAC 57.399 47.619 0.00 0.00 0.00 3.77
107 108 5.939764 ATTATACTCAGTCTCTGCACCAA 57.060 39.130 0.00 0.00 0.00 3.67
108 109 5.422012 TCAATTATACTCAGTCTCTGCACCA 59.578 40.000 0.00 0.00 0.00 4.17
109 110 5.907207 TCAATTATACTCAGTCTCTGCACC 58.093 41.667 0.00 0.00 0.00 5.01
110 111 9.352784 GATATCAATTATACTCAGTCTCTGCAC 57.647 37.037 0.00 0.00 0.00 4.57
111 112 9.306777 AGATATCAATTATACTCAGTCTCTGCA 57.693 33.333 5.32 0.00 0.00 4.41
112 113 9.787532 GAGATATCAATTATACTCAGTCTCTGC 57.212 37.037 5.32 0.00 0.00 4.26
116 117 8.735315 CGTGGAGATATCAATTATACTCAGTCT 58.265 37.037 5.32 0.00 0.00 3.24
117 118 8.731605 TCGTGGAGATATCAATTATACTCAGTC 58.268 37.037 5.32 0.00 0.00 3.51
118 119 8.637196 TCGTGGAGATATCAATTATACTCAGT 57.363 34.615 5.32 0.00 0.00 3.41
134 135 9.676129 AGGGGAATATAATAATATCGTGGAGAT 57.324 33.333 0.00 0.00 43.19 2.75
135 136 9.502035 AAGGGGAATATAATAATATCGTGGAGA 57.498 33.333 0.00 0.00 0.00 3.71
138 139 9.899661 TGAAAGGGGAATATAATAATATCGTGG 57.100 33.333 0.00 0.00 0.00 4.94
167 168 7.929941 TTTAAAAGTTTGCCCATGACTTTTT 57.070 28.000 20.69 10.14 45.98 1.94
169 170 7.929941 TTTTTAAAAGTTTGCCCATGACTTT 57.070 28.000 0.14 0.00 43.35 2.66
170 171 9.051679 GTATTTTTAAAAGTTTGCCCATGACTT 57.948 29.630 0.94 0.00 35.27 3.01
171 172 7.659799 GGTATTTTTAAAAGTTTGCCCATGACT 59.340 33.333 0.94 0.00 0.00 3.41
172 173 7.094975 GGGTATTTTTAAAAGTTTGCCCATGAC 60.095 37.037 19.62 4.67 32.98 3.06
173 174 6.937465 GGGTATTTTTAAAAGTTTGCCCATGA 59.063 34.615 19.62 0.00 32.98 3.07
174 175 6.712547 TGGGTATTTTTAAAAGTTTGCCCATG 59.287 34.615 21.65 0.00 37.50 3.66
175 176 6.842676 TGGGTATTTTTAAAAGTTTGCCCAT 58.157 32.000 21.65 7.27 37.50 4.00
176 177 6.248569 TGGGTATTTTTAAAAGTTTGCCCA 57.751 33.333 21.65 21.65 39.80 5.36
177 178 7.445707 TCATTGGGTATTTTTAAAAGTTTGCCC 59.554 33.333 18.57 18.57 0.00 5.36
178 179 8.384607 TCATTGGGTATTTTTAAAAGTTTGCC 57.615 30.769 0.94 4.24 0.00 4.52
179 180 9.658475 GTTCATTGGGTATTTTTAAAAGTTTGC 57.342 29.630 0.94 0.00 0.00 3.68
326 329 9.845740 ATATGGCATGTATTACAGTTGTCTTAA 57.154 29.630 10.98 0.00 0.00 1.85
598 601 2.586425 GCCCATAGCAATTTGCCTCTA 58.414 47.619 17.51 4.65 46.52 2.43
652 655 4.451150 TGGACACGGATCGCTGGC 62.451 66.667 0.00 0.00 0.00 4.85
653 656 2.202797 CTGGACACGGATCGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
715 726 5.927954 AGATCCGTAGATAGAGTTCGTTC 57.072 43.478 0.00 0.00 30.90 3.95
726 737 2.555670 GGAGCAGGGTAGATCCGTAGAT 60.556 54.545 0.00 0.00 33.95 1.98
846 885 0.933509 GTCGTCGTCGTGAGTTGCTT 60.934 55.000 1.33 0.00 38.33 3.91
847 886 1.370172 GTCGTCGTCGTGAGTTGCT 60.370 57.895 1.33 0.00 38.33 3.91
959 1010 2.241880 CGGCGGTCTCGTTGTTGTT 61.242 57.895 0.00 0.00 38.89 2.83
1908 1974 0.965866 TCTGGATGGCGAGACGTTCT 60.966 55.000 0.00 0.00 0.00 3.01
1960 2026 2.571757 CCTAGCAGCAACGTCGGA 59.428 61.111 0.00 0.00 0.00 4.55
2299 2428 4.454678 CACATGCTAGCAATTCTAGGGAA 58.545 43.478 23.54 0.00 43.95 3.97
2303 2432 3.562973 CCACCACATGCTAGCAATTCTAG 59.437 47.826 23.54 11.04 46.01 2.43
2344 4405 5.647658 TGAGTCTAACATTTTCGCCATCAAT 59.352 36.000 0.00 0.00 0.00 2.57
2345 4406 5.000591 TGAGTCTAACATTTTCGCCATCAA 58.999 37.500 0.00 0.00 0.00 2.57
2346 4407 4.391830 GTGAGTCTAACATTTTCGCCATCA 59.608 41.667 0.00 0.00 0.00 3.07
2347 4408 4.492570 CGTGAGTCTAACATTTTCGCCATC 60.493 45.833 0.00 0.00 0.00 3.51
2348 4409 3.370978 CGTGAGTCTAACATTTTCGCCAT 59.629 43.478 0.00 0.00 0.00 4.40
2349 4410 2.734606 CGTGAGTCTAACATTTTCGCCA 59.265 45.455 0.00 0.00 0.00 5.69
2350 4411 2.991190 TCGTGAGTCTAACATTTTCGCC 59.009 45.455 0.00 0.00 0.00 5.54
2351 4412 4.150098 ACTTCGTGAGTCTAACATTTTCGC 59.850 41.667 0.00 0.00 31.20 4.70
2352 4413 5.824243 ACTTCGTGAGTCTAACATTTTCG 57.176 39.130 0.00 0.00 31.20 3.46
2353 4414 8.373992 GTGATACTTCGTGAGTCTAACATTTTC 58.626 37.037 0.00 0.00 39.86 2.29
2354 4415 7.061905 CGTGATACTTCGTGAGTCTAACATTTT 59.938 37.037 0.00 0.00 39.86 1.82
2355 4416 6.527023 CGTGATACTTCGTGAGTCTAACATTT 59.473 38.462 0.00 0.00 39.86 2.32
2356 4417 6.028368 CGTGATACTTCGTGAGTCTAACATT 58.972 40.000 0.00 0.00 39.86 2.71
2357 4418 5.448768 CCGTGATACTTCGTGAGTCTAACAT 60.449 44.000 0.00 0.00 39.86 2.71
2358 4419 4.142752 CCGTGATACTTCGTGAGTCTAACA 60.143 45.833 0.00 0.00 39.86 2.41
2359 4420 4.341099 CCGTGATACTTCGTGAGTCTAAC 58.659 47.826 0.00 0.00 39.86 2.34
2360 4421 3.376234 CCCGTGATACTTCGTGAGTCTAA 59.624 47.826 0.00 0.00 39.86 2.10
2361 4422 2.941064 CCCGTGATACTTCGTGAGTCTA 59.059 50.000 0.00 0.00 39.86 2.59
2362 4423 1.743958 CCCGTGATACTTCGTGAGTCT 59.256 52.381 0.00 0.00 39.86 3.24
2363 4424 1.202268 CCCCGTGATACTTCGTGAGTC 60.202 57.143 0.00 0.00 39.86 3.36
2364 4425 0.815734 CCCCGTGATACTTCGTGAGT 59.184 55.000 0.37 0.37 42.55 3.41
2365 4426 0.527817 GCCCCGTGATACTTCGTGAG 60.528 60.000 0.00 0.00 0.00 3.51
2366 4427 0.968901 AGCCCCGTGATACTTCGTGA 60.969 55.000 0.00 0.00 0.00 4.35
2367 4428 0.108329 AAGCCCCGTGATACTTCGTG 60.108 55.000 0.00 0.00 0.00 4.35
2368 4429 0.611714 AAAGCCCCGTGATACTTCGT 59.388 50.000 0.00 0.00 0.00 3.85
2369 4430 1.734163 AAAAGCCCCGTGATACTTCG 58.266 50.000 0.00 0.00 0.00 3.79
2386 4447 4.882842 GGGGGCAGATTTGTTAGAAAAA 57.117 40.909 0.00 0.00 0.00 1.94
2439 4500 4.554036 GAGAGGATGGGCCCGCAC 62.554 72.222 19.37 9.51 37.37 5.34
2443 4504 2.375345 TTTCGGAGAGGATGGGCCC 61.375 63.158 17.59 17.59 38.43 5.80
2444 4505 1.153147 GTTTCGGAGAGGATGGGCC 60.153 63.158 0.00 0.00 38.43 5.80
2445 4506 1.521681 CGTTTCGGAGAGGATGGGC 60.522 63.158 0.00 0.00 38.43 5.36
2446 4507 0.753262 ATCGTTTCGGAGAGGATGGG 59.247 55.000 3.28 0.00 38.43 4.00
2447 4508 2.623889 ACTATCGTTTCGGAGAGGATGG 59.376 50.000 12.39 11.83 38.43 3.51
2448 4509 3.992260 ACTATCGTTTCGGAGAGGATG 57.008 47.619 12.39 6.57 38.43 3.51
2449 4510 4.208746 AGAACTATCGTTTCGGAGAGGAT 58.791 43.478 8.50 8.50 38.43 3.24
2450 4511 3.618351 AGAACTATCGTTTCGGAGAGGA 58.382 45.455 0.00 0.00 38.43 3.71
2451 4512 5.692613 ATAGAACTATCGTTTCGGAGAGG 57.307 43.478 0.00 0.00 38.43 3.69
2452 4513 5.915758 CCAATAGAACTATCGTTTCGGAGAG 59.084 44.000 0.00 0.00 38.43 3.20
2453 4514 5.359009 ACCAATAGAACTATCGTTTCGGAGA 59.641 40.000 0.00 0.00 32.39 3.71
2454 4515 5.589192 ACCAATAGAACTATCGTTTCGGAG 58.411 41.667 0.00 0.00 32.39 4.63
2455 4516 5.450965 GGACCAATAGAACTATCGTTTCGGA 60.451 44.000 0.00 0.00 32.39 4.55
2456 4517 4.743644 GGACCAATAGAACTATCGTTTCGG 59.256 45.833 0.00 0.00 32.39 4.30
2457 4518 5.231568 GTGGACCAATAGAACTATCGTTTCG 59.768 44.000 0.00 0.00 32.39 3.46
2458 4519 5.522824 GGTGGACCAATAGAACTATCGTTTC 59.477 44.000 0.00 0.00 32.44 2.78
2459 4520 5.189145 AGGTGGACCAATAGAACTATCGTTT 59.811 40.000 0.00 0.00 38.89 3.60
2460 4521 4.715297 AGGTGGACCAATAGAACTATCGTT 59.285 41.667 0.00 0.00 38.89 3.85
2461 4522 4.287552 AGGTGGACCAATAGAACTATCGT 58.712 43.478 0.00 0.00 38.89 3.73
2462 4523 4.341235 TGAGGTGGACCAATAGAACTATCG 59.659 45.833 0.00 0.00 38.89 2.92
2463 4524 5.871396 TGAGGTGGACCAATAGAACTATC 57.129 43.478 0.00 0.00 38.89 2.08
2464 4525 5.726793 AGTTGAGGTGGACCAATAGAACTAT 59.273 40.000 0.00 0.00 38.89 2.12
2465 4526 5.091552 AGTTGAGGTGGACCAATAGAACTA 58.908 41.667 0.00 0.00 38.89 2.24
2466 4527 3.910627 AGTTGAGGTGGACCAATAGAACT 59.089 43.478 0.00 0.00 38.89 3.01
2467 4528 4.287766 AGTTGAGGTGGACCAATAGAAC 57.712 45.455 0.00 0.00 38.89 3.01
2468 4529 4.841813 TGTAGTTGAGGTGGACCAATAGAA 59.158 41.667 0.00 0.00 38.89 2.10
2469 4530 4.222145 GTGTAGTTGAGGTGGACCAATAGA 59.778 45.833 0.00 0.00 38.89 1.98
2470 4531 4.504858 GTGTAGTTGAGGTGGACCAATAG 58.495 47.826 0.00 0.00 38.89 1.73
2471 4532 3.262405 GGTGTAGTTGAGGTGGACCAATA 59.738 47.826 0.00 0.00 38.89 1.90
2472 4533 2.039879 GGTGTAGTTGAGGTGGACCAAT 59.960 50.000 0.00 0.00 38.89 3.16
2473 4534 1.418637 GGTGTAGTTGAGGTGGACCAA 59.581 52.381 0.00 0.00 38.89 3.67
2474 4535 1.053424 GGTGTAGTTGAGGTGGACCA 58.947 55.000 0.00 0.00 38.89 4.02
2475 4536 0.037605 CGGTGTAGTTGAGGTGGACC 60.038 60.000 0.00 0.00 0.00 4.46
2476 4537 0.677842 ACGGTGTAGTTGAGGTGGAC 59.322 55.000 0.00 0.00 0.00 4.02
2477 4538 0.677288 CACGGTGTAGTTGAGGTGGA 59.323 55.000 0.00 0.00 0.00 4.02
2478 4539 0.677288 TCACGGTGTAGTTGAGGTGG 59.323 55.000 8.17 0.00 0.00 4.61
2479 4540 2.132762 GTTCACGGTGTAGTTGAGGTG 58.867 52.381 8.17 0.00 0.00 4.00
2480 4541 2.035576 GAGTTCACGGTGTAGTTGAGGT 59.964 50.000 8.17 0.00 0.00 3.85
2481 4542 2.296471 AGAGTTCACGGTGTAGTTGAGG 59.704 50.000 8.17 0.00 0.00 3.86
2482 4543 3.243434 ACAGAGTTCACGGTGTAGTTGAG 60.243 47.826 8.17 0.00 0.00 3.02
2483 4544 2.691526 ACAGAGTTCACGGTGTAGTTGA 59.308 45.455 8.17 0.00 0.00 3.18
2484 4545 3.093717 ACAGAGTTCACGGTGTAGTTG 57.906 47.619 8.17 5.82 0.00 3.16
2485 4546 6.579666 TTATACAGAGTTCACGGTGTAGTT 57.420 37.500 8.17 0.00 0.00 2.24
2486 4547 6.579666 TTTATACAGAGTTCACGGTGTAGT 57.420 37.500 8.17 0.90 0.00 2.73
2487 4548 7.758076 TGATTTTATACAGAGTTCACGGTGTAG 59.242 37.037 8.17 0.00 0.00 2.74
2488 4549 7.543172 GTGATTTTATACAGAGTTCACGGTGTA 59.457 37.037 8.17 0.00 0.00 2.90
2489 4550 6.367969 GTGATTTTATACAGAGTTCACGGTGT 59.632 38.462 8.17 0.00 0.00 4.16
2490 4551 6.183360 GGTGATTTTATACAGAGTTCACGGTG 60.183 42.308 0.56 0.56 34.32 4.94
2491 4552 5.873164 GGTGATTTTATACAGAGTTCACGGT 59.127 40.000 0.00 0.00 34.32 4.83
2492 4553 5.293569 GGGTGATTTTATACAGAGTTCACGG 59.706 44.000 0.00 0.00 34.32 4.94
2493 4554 5.293569 GGGGTGATTTTATACAGAGTTCACG 59.706 44.000 0.00 0.00 34.32 4.35
2494 4555 5.293569 CGGGGTGATTTTATACAGAGTTCAC 59.706 44.000 0.00 0.00 33.10 3.18
2495 4556 5.046159 ACGGGGTGATTTTATACAGAGTTCA 60.046 40.000 0.00 0.00 0.00 3.18
2496 4557 5.425630 ACGGGGTGATTTTATACAGAGTTC 58.574 41.667 0.00 0.00 0.00 3.01
2497 4558 5.431179 ACGGGGTGATTTTATACAGAGTT 57.569 39.130 0.00 0.00 0.00 3.01
2498 4559 5.046159 TCAACGGGGTGATTTTATACAGAGT 60.046 40.000 0.00 0.00 0.00 3.24
2499 4560 5.424757 TCAACGGGGTGATTTTATACAGAG 58.575 41.667 0.00 0.00 0.00 3.35
2500 4561 5.423704 TCAACGGGGTGATTTTATACAGA 57.576 39.130 0.00 0.00 0.00 3.41
2501 4562 6.693315 AATCAACGGGGTGATTTTATACAG 57.307 37.500 6.13 0.00 44.09 2.74
2510 4571 2.026262 ACTGCTAAATCAACGGGGTGAT 60.026 45.455 0.00 0.00 40.01 3.06
2511 4572 1.349688 ACTGCTAAATCAACGGGGTGA 59.650 47.619 0.00 0.00 0.00 4.02
2512 4573 1.821216 ACTGCTAAATCAACGGGGTG 58.179 50.000 0.00 0.00 0.00 4.61
2513 4574 2.570302 AGTACTGCTAAATCAACGGGGT 59.430 45.455 0.00 0.00 0.00 4.95
2514 4575 3.261981 AGTACTGCTAAATCAACGGGG 57.738 47.619 0.00 0.00 0.00 5.73
2515 4576 4.250464 TGAAGTACTGCTAAATCAACGGG 58.750 43.478 1.64 0.00 0.00 5.28
2516 4577 6.092122 TCAATGAAGTACTGCTAAATCAACGG 59.908 38.462 1.64 0.00 0.00 4.44
2517 4578 7.060600 TCAATGAAGTACTGCTAAATCAACG 57.939 36.000 1.64 0.00 0.00 4.10
2518 4579 7.912250 CCATCAATGAAGTACTGCTAAATCAAC 59.088 37.037 1.64 0.00 0.00 3.18
2519 4580 7.611467 ACCATCAATGAAGTACTGCTAAATCAA 59.389 33.333 1.64 0.00 0.00 2.57
2520 4581 7.066163 CACCATCAATGAAGTACTGCTAAATCA 59.934 37.037 1.64 0.00 0.00 2.57
2521 4582 7.412853 CACCATCAATGAAGTACTGCTAAATC 58.587 38.462 1.64 0.00 0.00 2.17
2522 4583 6.183360 GCACCATCAATGAAGTACTGCTAAAT 60.183 38.462 1.64 0.00 0.00 1.40
2523 4584 5.123820 GCACCATCAATGAAGTACTGCTAAA 59.876 40.000 1.64 0.00 0.00 1.85
2524 4585 4.635765 GCACCATCAATGAAGTACTGCTAA 59.364 41.667 1.64 0.00 0.00 3.09
2525 4586 4.191544 GCACCATCAATGAAGTACTGCTA 58.808 43.478 1.64 0.00 0.00 3.49
2526 4587 3.012518 GCACCATCAATGAAGTACTGCT 58.987 45.455 1.64 0.00 0.00 4.24
2527 4588 2.098117 GGCACCATCAATGAAGTACTGC 59.902 50.000 0.00 0.00 0.00 4.40
2528 4589 3.614092 AGGCACCATCAATGAAGTACTG 58.386 45.455 0.00 0.00 0.00 2.74
2529 4590 4.471386 ACTAGGCACCATCAATGAAGTACT 59.529 41.667 0.00 0.00 0.00 2.73
2530 4591 4.770795 ACTAGGCACCATCAATGAAGTAC 58.229 43.478 0.00 0.00 0.00 2.73
2531 4592 5.185454 CAACTAGGCACCATCAATGAAGTA 58.815 41.667 0.00 0.00 0.00 2.24
2532 4593 4.012374 CAACTAGGCACCATCAATGAAGT 58.988 43.478 0.00 0.00 0.00 3.01
2533 4594 3.379372 CCAACTAGGCACCATCAATGAAG 59.621 47.826 0.00 0.00 0.00 3.02
2534 4595 3.010027 TCCAACTAGGCACCATCAATGAA 59.990 43.478 0.00 0.00 37.29 2.57
2535 4596 2.575735 TCCAACTAGGCACCATCAATGA 59.424 45.455 0.00 0.00 37.29 2.57
2536 4597 3.003394 TCCAACTAGGCACCATCAATG 57.997 47.619 0.00 0.00 37.29 2.82
2544 4605 0.875059 GCACACTTCCAACTAGGCAC 59.125 55.000 0.00 0.00 37.29 5.01
2559 4620 2.986979 TCGTCAGGTAGCCGCACA 60.987 61.111 0.00 0.00 0.00 4.57
2568 4629 1.214589 GCACATACCGTCGTCAGGT 59.785 57.895 4.83 4.83 45.28 4.00
2577 4638 3.245990 CACTGACATACATGCACATACCG 59.754 47.826 0.00 0.00 0.00 4.02
2582 4643 2.425539 CCACACTGACATACATGCACA 58.574 47.619 0.00 0.00 0.00 4.57
2583 4644 1.131126 GCCACACTGACATACATGCAC 59.869 52.381 0.00 0.00 0.00 4.57
2585 4646 1.399440 CTGCCACACTGACATACATGC 59.601 52.381 0.00 0.00 0.00 4.06
2586 4647 2.703416 ACTGCCACACTGACATACATG 58.297 47.619 0.00 0.00 0.00 3.21
2587 4648 3.515502 ACTACTGCCACACTGACATACAT 59.484 43.478 0.00 0.00 0.00 2.29
2588 4649 2.897326 ACTACTGCCACACTGACATACA 59.103 45.455 0.00 0.00 0.00 2.29
2590 4651 6.549736 ACATATACTACTGCCACACTGACATA 59.450 38.462 0.00 0.00 0.00 2.29
2592 4653 4.709886 ACATATACTACTGCCACACTGACA 59.290 41.667 0.00 0.00 0.00 3.58
2593 4654 5.263968 ACATATACTACTGCCACACTGAC 57.736 43.478 0.00 0.00 0.00 3.51
2613 4674 3.065648 GCTTGGTTTAAAGGAACACGACA 59.934 43.478 0.00 0.00 0.00 4.35
2642 4703 1.946745 TTCTGTCATGTGTCGTTGCA 58.053 45.000 0.00 0.00 0.00 4.08
2649 4710 4.260985 TGTGTGTTCTTTCTGTCATGTGT 58.739 39.130 0.00 0.00 0.00 3.72
2657 4718 5.437289 TTTAGGCATGTGTGTTCTTTCTG 57.563 39.130 0.00 0.00 0.00 3.02
2664 4725 5.070313 ACATTCCTTTTTAGGCATGTGTGTT 59.930 36.000 8.36 0.00 42.59 3.32
2678 4739 2.399396 CGAACACGCACATTCCTTTT 57.601 45.000 0.00 0.00 0.00 2.27
2692 4753 2.434185 GCCGACTGATGGCGAACA 60.434 61.111 0.00 0.00 43.70 3.18
2702 4763 4.393062 ACATTATCTCTTTGTTGCCGACTG 59.607 41.667 0.00 0.00 0.00 3.51
2703 4764 4.393062 CACATTATCTCTTTGTTGCCGACT 59.607 41.667 0.00 0.00 0.00 4.18
2704 4765 4.154195 ACACATTATCTCTTTGTTGCCGAC 59.846 41.667 0.00 0.00 0.00 4.79
2720 4781 6.068461 TCCCTATGGTGCTTTTACACATTA 57.932 37.500 0.00 0.00 42.55 1.90
2721 4782 4.929479 TCCCTATGGTGCTTTTACACATT 58.071 39.130 0.00 0.00 42.55 2.71
2758 4819 3.049674 CGCCAGTTGATGCGGTGT 61.050 61.111 0.00 0.00 46.65 4.16
2773 4834 4.935885 ATTTCTGATTGTTCTGACTCGC 57.064 40.909 0.00 0.00 30.46 5.03
2785 4846 7.505585 TGACCTGTGTTTTCCTTATTTCTGATT 59.494 33.333 0.00 0.00 0.00 2.57
2790 4851 6.213677 GGTTGACCTGTGTTTTCCTTATTTC 58.786 40.000 0.00 0.00 0.00 2.17
2829 4891 5.753438 CAGTTCTTTTTAGGGAAGTTTTGCC 59.247 40.000 0.00 0.00 42.22 4.52
2830 4892 5.753438 CCAGTTCTTTTTAGGGAAGTTTTGC 59.247 40.000 0.00 0.00 0.00 3.68
2831 4893 5.753438 GCCAGTTCTTTTTAGGGAAGTTTTG 59.247 40.000 0.00 0.00 0.00 2.44
2832 4894 5.661312 AGCCAGTTCTTTTTAGGGAAGTTTT 59.339 36.000 0.00 0.00 0.00 2.43
2833 4895 5.208890 AGCCAGTTCTTTTTAGGGAAGTTT 58.791 37.500 0.00 0.00 0.00 2.66
2834 4896 4.804597 AGCCAGTTCTTTTTAGGGAAGTT 58.195 39.130 0.00 0.00 0.00 2.66
2835 4897 4.455070 AGCCAGTTCTTTTTAGGGAAGT 57.545 40.909 0.00 0.00 0.00 3.01
2836 4898 4.944317 CCTAGCCAGTTCTTTTTAGGGAAG 59.056 45.833 0.00 0.00 0.00 3.46
2837 4899 4.809691 GCCTAGCCAGTTCTTTTTAGGGAA 60.810 45.833 0.00 0.00 0.00 3.97
2838 4900 3.308188 GCCTAGCCAGTTCTTTTTAGGGA 60.308 47.826 0.00 0.00 0.00 4.20
2839 4901 3.017442 GCCTAGCCAGTTCTTTTTAGGG 58.983 50.000 0.00 0.00 0.00 3.53
2840 4902 3.686016 TGCCTAGCCAGTTCTTTTTAGG 58.314 45.455 0.00 0.00 0.00 2.69
2841 4903 5.705609 TTTGCCTAGCCAGTTCTTTTTAG 57.294 39.130 0.00 0.00 0.00 1.85
2842 4904 5.221362 GGTTTTGCCTAGCCAGTTCTTTTTA 60.221 40.000 0.00 0.00 0.00 1.52
2843 4905 4.442893 GGTTTTGCCTAGCCAGTTCTTTTT 60.443 41.667 0.00 0.00 0.00 1.94
2844 4906 3.069586 GGTTTTGCCTAGCCAGTTCTTTT 59.930 43.478 0.00 0.00 0.00 2.27
2845 4907 2.628178 GGTTTTGCCTAGCCAGTTCTTT 59.372 45.455 0.00 0.00 0.00 2.52
2846 4908 2.239400 GGTTTTGCCTAGCCAGTTCTT 58.761 47.619 0.00 0.00 0.00 2.52
2847 4909 1.144913 TGGTTTTGCCTAGCCAGTTCT 59.855 47.619 0.00 0.00 38.35 3.01
2848 4910 1.616159 TGGTTTTGCCTAGCCAGTTC 58.384 50.000 0.00 0.00 38.35 3.01
2849 4911 2.080654 TTGGTTTTGCCTAGCCAGTT 57.919 45.000 0.00 0.00 38.35 3.16
2876 4938 7.442364 TCTTTAGTGTGCTATTATGATTGGCTC 59.558 37.037 0.00 0.00 0.00 4.70
2911 4973 5.114785 CACACCGTTTTATCATTTGTGGA 57.885 39.130 0.00 0.00 31.29 4.02
2913 4975 3.672867 GCCACACCGTTTTATCATTTGTG 59.327 43.478 0.00 0.00 34.06 3.33
2943 5006 7.237263 TGGTTTTACTGGGTACTAGGATAAACA 59.763 37.037 0.00 10.42 43.06 2.83
2953 5016 6.707273 TCCTTATTGGTTTTACTGGGTACT 57.293 37.500 0.00 0.00 37.07 2.73
2954 5017 7.764141 TTTCCTTATTGGTTTTACTGGGTAC 57.236 36.000 0.00 0.00 37.07 3.34
2955 5018 8.226112 TCTTTTCCTTATTGGTTTTACTGGGTA 58.774 33.333 0.00 0.00 37.07 3.69
2956 5019 7.070629 TCTTTTCCTTATTGGTTTTACTGGGT 58.929 34.615 0.00 0.00 37.07 4.51
2959 5022 7.114388 GCGTTCTTTTCCTTATTGGTTTTACTG 59.886 37.037 0.00 0.00 37.07 2.74
2971 5041 3.280295 TGTGGTTGCGTTCTTTTCCTTA 58.720 40.909 0.00 0.00 0.00 2.69
2975 5045 3.507786 AGTTTGTGGTTGCGTTCTTTTC 58.492 40.909 0.00 0.00 0.00 2.29
2998 5068 2.106857 TCGTCTTAACCCAACCCATGTT 59.893 45.455 0.00 0.00 34.14 2.71
3007 5077 1.002659 CCACCACATCGTCTTAACCCA 59.997 52.381 0.00 0.00 0.00 4.51
3010 5080 4.933400 ACAATACCACCACATCGTCTTAAC 59.067 41.667 0.00 0.00 0.00 2.01
3016 5086 5.941058 TCAATTAACAATACCACCACATCGT 59.059 36.000 0.00 0.00 0.00 3.73
3066 5136 2.622903 TATTTCAGCGAGCGGTCCCG 62.623 60.000 9.39 0.24 43.09 5.14
3067 5137 0.249911 ATATTTCAGCGAGCGGTCCC 60.250 55.000 9.39 0.00 0.00 4.46
3080 5150 1.068741 ACGCGAGAGGTCCCATATTTC 59.931 52.381 15.93 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.