Multiple sequence alignment - TraesCS3B01G425600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G425600 chr3B 100.000 3236 0 0 1 3236 663420687 663423922 0.000000e+00 5976.0
1 TraesCS3B01G425600 chr3B 97.951 244 5 0 2993 3236 663445563 663445806 1.070000e-114 424.0
2 TraesCS3B01G425600 chr3B 96.774 62 2 0 2932 2993 661679933 661679994 1.590000e-18 104.0
3 TraesCS3B01G425600 chr3D 95.422 2534 76 11 109 2616 502144630 502147149 0.000000e+00 4000.0
4 TraesCS3B01G425600 chr3D 87.667 300 11 9 2658 2932 502147150 502147448 3.110000e-85 326.0
5 TraesCS3B01G425600 chr3D 94.203 69 3 1 2932 2999 519326210 519326142 1.590000e-18 104.0
6 TraesCS3B01G425600 chr3A 94.102 2255 87 12 100 2333 641629484 641631713 0.000000e+00 3386.0
7 TraesCS3B01G425600 chr3A 85.957 235 14 7 2332 2550 641631749 641631980 1.940000e-57 233.0
8 TraesCS3B01G425600 chr3A 92.537 67 5 0 2570 2636 641632047 641632113 2.660000e-16 97.1
9 TraesCS3B01G425600 chr4D 83.808 2211 263 58 124 2277 503409673 503411845 0.000000e+00 2012.0
10 TraesCS3B01G425600 chr4D 94.312 756 42 1 1398 2153 481551576 481552330 0.000000e+00 1157.0
11 TraesCS3B01G425600 chr4D 97.119 243 6 1 2994 3236 73364653 73364412 3.010000e-110 409.0
12 TraesCS3B01G425600 chr4B 83.632 2230 264 58 117 2277 648514047 648516244 0.000000e+00 2002.0
13 TraesCS3B01G425600 chr4B 91.228 114 3 3 1 107 17031717 17031830 7.230000e-32 148.0
14 TraesCS3B01G425600 chr4B 94.000 50 3 0 2866 2915 437093704 437093753 3.460000e-10 76.8
15 TraesCS3B01G425600 chr5A 84.468 1307 137 31 421 1662 687738547 687737242 0.000000e+00 1229.0
16 TraesCS3B01G425600 chr5A 89.683 756 75 3 1399 2153 518028329 518027576 0.000000e+00 961.0
17 TraesCS3B01G425600 chr6D 92.506 774 38 3 1398 2153 288463183 288463954 0.000000e+00 1090.0
18 TraesCS3B01G425600 chr6D 92.989 756 33 2 1398 2153 62249700 62248965 0.000000e+00 1085.0
19 TraesCS3B01G425600 chr4A 92.573 754 53 3 1401 2153 127169899 127169148 0.000000e+00 1079.0
20 TraesCS3B01G425600 chr5D 75.490 1326 270 47 722 2014 433677045 433678348 5.980000e-167 597.0
21 TraesCS3B01G425600 chr5D 97.119 243 7 0 2994 3236 554387905 554388147 8.360000e-111 411.0
22 TraesCS3B01G425600 chr5D 97.119 243 6 1 2994 3236 254481843 254482084 3.010000e-110 409.0
23 TraesCS3B01G425600 chr5D 96.721 244 7 1 2993 3236 254486767 254487009 3.890000e-109 405.0
24 TraesCS3B01G425600 chr5D 96.154 52 2 0 2864 2915 340399201 340399150 5.750000e-13 86.1
25 TraesCS3B01G425600 chr1D 97.131 244 6 1 2993 3236 303074531 303074289 8.360000e-111 411.0
26 TraesCS3B01G425600 chr1D 76.791 349 68 9 834 1172 482896476 482896821 1.980000e-42 183.0
27 TraesCS3B01G425600 chr2D 96.735 245 7 1 2992 3236 112535394 112535151 1.080000e-109 407.0
28 TraesCS3B01G425600 chr2D 96.721 244 7 1 2993 3236 568884970 568885212 3.890000e-109 405.0
29 TraesCS3B01G425600 chr2D 95.652 69 2 1 2932 2999 13361921 13361989 3.410000e-20 110.0
30 TraesCS3B01G425600 chr2D 95.652 69 2 1 2932 2999 535477736 535477668 3.410000e-20 110.0
31 TraesCS3B01G425600 chr2D 92.308 52 4 0 2864 2915 13361880 13361931 1.250000e-09 75.0
32 TraesCS3B01G425600 chr1B 96.356 247 8 1 2991 3236 497982591 497982837 3.890000e-109 405.0
33 TraesCS3B01G425600 chr1B 92.174 115 2 1 1 108 370035871 370035757 4.320000e-34 156.0
34 TraesCS3B01G425600 chr1B 94.231 52 3 0 2864 2915 679726252 679726201 2.680000e-11 80.5
35 TraesCS3B01G425600 chr1A 76.149 457 75 23 729 1172 579288648 579288213 3.270000e-50 209.0
36 TraesCS3B01G425600 chr1A 96.923 65 2 0 2932 2996 508127895 508127831 3.410000e-20 110.0
37 TraesCS3B01G425600 chr7B 91.453 117 3 2 1 110 685999982 685999866 1.550000e-33 154.0
38 TraesCS3B01G425600 chrUn 91.228 114 4 2 1 108 324892438 324892551 2.010000e-32 150.0
39 TraesCS3B01G425600 chrUn 91.228 114 4 2 1 108 324895565 324895678 2.010000e-32 150.0
40 TraesCS3B01G425600 chrUn 91.228 114 4 2 1 108 406870372 406870259 2.010000e-32 150.0
41 TraesCS3B01G425600 chrUn 94.231 52 1 2 2864 2915 15503112 15503063 9.630000e-11 78.7
42 TraesCS3B01G425600 chr6B 91.304 115 3 3 1 108 422969027 422968913 2.010000e-32 150.0
43 TraesCS3B01G425600 chr5B 91.892 111 3 3 1 105 489606422 489606532 2.010000e-32 150.0
44 TraesCS3B01G425600 chr2B 90.598 117 4 1 1 110 152706550 152706666 7.230000e-32 148.0
45 TraesCS3B01G425600 chr2B 86.885 122 16 0 834 955 678388804 678388683 1.570000e-28 137.0
46 TraesCS3B01G425600 chr2B 94.231 52 3 0 2864 2915 675381319 675381268 2.680000e-11 80.5
47 TraesCS3B01G425600 chr2A 74.640 347 76 10 834 1169 706210517 706210172 3.370000e-30 143.0
48 TraesCS3B01G425600 chr2A 96.774 62 2 0 2932 2993 610051771 610051832 1.590000e-18 104.0
49 TraesCS3B01G425600 chr2A 94.203 69 3 1 2932 2999 678608320 678608252 1.590000e-18 104.0
50 TraesCS3B01G425600 chr2A 92.754 69 4 1 2932 2999 559620417 559620349 7.390000e-17 99.0
51 TraesCS3B01G425600 chr2A 96.154 52 2 0 2864 2915 678608361 678608310 5.750000e-13 86.1
52 TraesCS3B01G425600 chr2A 94.231 52 3 0 2864 2915 610051730 610051781 2.680000e-11 80.5
53 TraesCS3B01G425600 chr7D 95.385 65 3 0 2932 2996 564570981 564570917 1.590000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G425600 chr3B 663420687 663423922 3235 False 5976.0 5976 100.000000 1 3236 1 chr3B.!!$F2 3235
1 TraesCS3B01G425600 chr3D 502144630 502147448 2818 False 2163.0 4000 91.544500 109 2932 2 chr3D.!!$F1 2823
2 TraesCS3B01G425600 chr3A 641629484 641632113 2629 False 1238.7 3386 90.865333 100 2636 3 chr3A.!!$F1 2536
3 TraesCS3B01G425600 chr4D 503409673 503411845 2172 False 2012.0 2012 83.808000 124 2277 1 chr4D.!!$F2 2153
4 TraesCS3B01G425600 chr4D 481551576 481552330 754 False 1157.0 1157 94.312000 1398 2153 1 chr4D.!!$F1 755
5 TraesCS3B01G425600 chr4B 648514047 648516244 2197 False 2002.0 2002 83.632000 117 2277 1 chr4B.!!$F3 2160
6 TraesCS3B01G425600 chr5A 687737242 687738547 1305 True 1229.0 1229 84.468000 421 1662 1 chr5A.!!$R2 1241
7 TraesCS3B01G425600 chr5A 518027576 518028329 753 True 961.0 961 89.683000 1399 2153 1 chr5A.!!$R1 754
8 TraesCS3B01G425600 chr6D 288463183 288463954 771 False 1090.0 1090 92.506000 1398 2153 1 chr6D.!!$F1 755
9 TraesCS3B01G425600 chr6D 62248965 62249700 735 True 1085.0 1085 92.989000 1398 2153 1 chr6D.!!$R1 755
10 TraesCS3B01G425600 chr4A 127169148 127169899 751 True 1079.0 1079 92.573000 1401 2153 1 chr4A.!!$R1 752
11 TraesCS3B01G425600 chr5D 433677045 433678348 1303 False 597.0 597 75.490000 722 2014 1 chr5D.!!$F3 1292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 1.880796 GCGCGGCAAACAGGTTTTT 60.881 52.632 8.83 0.0 0.0 1.94 F
137 138 2.230025 CGATCTAATCTCATGGCGACCT 59.770 50.000 0.00 0.0 0.0 3.85 F
267 268 3.458163 CCCCTCCTGCTACGCGAA 61.458 66.667 15.93 0.0 0.0 4.70 F
1198 1272 3.119388 CGATCTTGGAGGTTACGGTTACA 60.119 47.826 0.00 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1004 1057 0.605589 CTTGACCTTCCCAACGTCCC 60.606 60.000 0.00 0.0 0.00 4.46 R
1011 1064 1.460255 CTTGGCCTTGACCTTCCCA 59.540 57.895 3.32 0.0 0.00 4.37 R
1203 1277 2.298163 ACCACGGTAGTTTGTCTGGTAG 59.702 50.000 0.00 0.0 0.00 3.18 R
2646 2899 0.035630 AAGAGAGCAGTCCACATGCC 60.036 55.000 0.00 0.0 44.97 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.280119 TTATAGCGCGGCTGCTGG 60.280 61.111 22.96 1.40 46.70 4.85
18 19 2.791868 TTATAGCGCGGCTGCTGGA 61.792 57.895 22.96 11.80 46.70 3.86
19 20 2.699576 TTATAGCGCGGCTGCTGGAG 62.700 60.000 22.96 0.14 46.70 3.86
65 66 4.622456 CGCGCGGCAAACAGGTTT 62.622 61.111 24.84 0.00 0.00 3.27
66 67 2.279186 GCGCGGCAAACAGGTTTT 60.279 55.556 8.83 0.00 0.00 2.43
67 68 1.880796 GCGCGGCAAACAGGTTTTT 60.881 52.632 8.83 0.00 0.00 1.94
95 96 4.166011 GCTTAGCGCGGCTGTTGG 62.166 66.667 8.83 0.00 40.10 3.77
96 97 2.434185 CTTAGCGCGGCTGTTGGA 60.434 61.111 8.83 0.00 40.10 3.53
97 98 2.434185 TTAGCGCGGCTGTTGGAG 60.434 61.111 8.83 0.00 40.10 3.86
98 99 2.835701 CTTAGCGCGGCTGTTGGAGA 62.836 60.000 8.83 0.00 40.10 3.71
99 100 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
100 101 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
101 102 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
102 103 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
103 104 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
107 108 2.559440 GGCTGTTGGAGATGCTCTAAG 58.441 52.381 0.00 0.00 31.92 2.18
122 123 4.397103 TGCTCTAAGAAAACCGACGATCTA 59.603 41.667 0.00 0.00 0.00 1.98
137 138 2.230025 CGATCTAATCTCATGGCGACCT 59.770 50.000 0.00 0.00 0.00 3.85
267 268 3.458163 CCCCTCCTGCTACGCGAA 61.458 66.667 15.93 0.00 0.00 4.70
1004 1057 3.490759 GGGTCTGACGCGCATGTG 61.491 66.667 5.73 0.66 0.00 3.21
1011 1064 4.980805 ACGCGCATGTGGGACGTT 62.981 61.111 27.77 4.38 37.41 3.99
1113 1166 3.986006 AAAGTGCTCGACGGCCGA 61.986 61.111 35.90 8.90 46.35 5.54
1198 1272 3.119388 CGATCTTGGAGGTTACGGTTACA 60.119 47.826 0.00 0.00 0.00 2.41
1203 1277 1.134877 GGAGGTTACGGTTACAGCTCC 60.135 57.143 13.72 13.72 45.43 4.70
1456 1536 1.626654 GATCACCGTCAAGTGCGTGG 61.627 60.000 0.00 0.00 37.68 4.94
1584 1668 3.019003 GCGCTTCCTGCTCCTGGTA 62.019 63.158 0.00 0.00 40.11 3.25
1690 1774 4.631740 TGGACGTGGCAGGGGAGA 62.632 66.667 12.33 0.00 0.00 3.71
2277 2418 1.067495 CCACTCAGTCTTCGACCTTCC 60.067 57.143 0.00 0.00 32.18 3.46
2370 2560 7.037438 TCGAGTTAGTATATTGTGGTTGAACC 58.963 38.462 7.57 7.57 39.22 3.62
2444 2643 6.761714 AGGATTTCGCAGTTAAGTACTATTGG 59.238 38.462 0.00 0.00 34.56 3.16
2483 2683 9.612066 TTTTTGAGTTGCTAAAGGATTTTCATT 57.388 25.926 0.00 0.00 40.09 2.57
2519 2725 7.553881 TCGTTTTTGTCTCTTGAATTTCTCT 57.446 32.000 0.00 0.00 0.00 3.10
2580 2833 5.888982 ACCCGTAGAAGATCACCATTATT 57.111 39.130 0.00 0.00 0.00 1.40
2617 2870 1.725557 GCCGTCGAGGATAGAGCACA 61.726 60.000 6.70 0.00 45.00 4.57
2636 2889 0.036010 ATCTGTTCTTCACCTGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
2637 2890 1.672356 CTGTTCTTCACCTGCCCGG 60.672 63.158 0.00 0.00 39.35 5.73
2638 2891 3.056328 GTTCTTCACCTGCCCGGC 61.056 66.667 1.04 1.04 35.61 6.13
2639 2892 4.697756 TTCTTCACCTGCCCGGCG 62.698 66.667 4.58 0.00 35.61 6.46
2705 2958 7.020010 CACTCTGATCAGTGTATTTTTCTTGC 58.980 38.462 25.57 0.00 39.26 4.01
2715 2968 6.761242 AGTGTATTTTTCTTGCCCTTCAAAAC 59.239 34.615 0.00 0.00 33.65 2.43
2716 2969 6.536941 GTGTATTTTTCTTGCCCTTCAAAACA 59.463 34.615 0.00 0.00 33.65 2.83
2717 2970 7.226523 GTGTATTTTTCTTGCCCTTCAAAACAT 59.773 33.333 0.00 0.00 33.65 2.71
2825 3089 0.245539 TTGATTGACTCGTCCCCGTC 59.754 55.000 0.00 0.00 35.01 4.79
2835 3099 4.612412 TCCCCGTCCGCACAACAC 62.612 66.667 0.00 0.00 0.00 3.32
2836 3100 4.920112 CCCCGTCCGCACAACACA 62.920 66.667 0.00 0.00 0.00 3.72
2846 3110 2.223363 CCGCACAACACACACATTACAA 60.223 45.455 0.00 0.00 0.00 2.41
2853 3117 7.009631 GCACAACACACACATTACAATTTTACA 59.990 33.333 0.00 0.00 0.00 2.41
2854 3118 8.317460 CACAACACACACATTACAATTTTACAC 58.683 33.333 0.00 0.00 0.00 2.90
2855 3119 8.247562 ACAACACACACATTACAATTTTACACT 58.752 29.630 0.00 0.00 0.00 3.55
2856 3120 8.530720 CAACACACACATTACAATTTTACACTG 58.469 33.333 0.00 0.00 0.00 3.66
2857 3121 7.199766 ACACACACATTACAATTTTACACTGG 58.800 34.615 0.00 0.00 0.00 4.00
2887 3165 5.938125 ACTGACATATGTAAAGTTGTGGGAC 59.062 40.000 8.71 0.00 0.00 4.46
2888 3166 5.250200 TGACATATGTAAAGTTGTGGGACC 58.750 41.667 8.71 0.00 0.00 4.46
2905 3183 8.560124 TGTGGGACCATATGCATGTATATATA 57.440 34.615 14.95 0.00 0.00 0.86
2932 3210 7.186021 AGTGTTTCCTCGTAAAATAACTGTG 57.814 36.000 0.00 0.00 0.00 3.66
2933 3211 6.987992 AGTGTTTCCTCGTAAAATAACTGTGA 59.012 34.615 0.00 0.00 0.00 3.58
2934 3212 7.496591 AGTGTTTCCTCGTAAAATAACTGTGAA 59.503 33.333 0.00 0.00 0.00 3.18
2935 3213 8.124199 GTGTTTCCTCGTAAAATAACTGTGAAA 58.876 33.333 0.00 0.00 0.00 2.69
2936 3214 8.339714 TGTTTCCTCGTAAAATAACTGTGAAAG 58.660 33.333 0.00 0.00 0.00 2.62
2937 3215 8.340443 GTTTCCTCGTAAAATAACTGTGAAAGT 58.660 33.333 0.00 0.00 42.60 2.66
2938 3216 9.545105 TTTCCTCGTAAAATAACTGTGAAAGTA 57.455 29.630 0.00 0.00 38.56 2.24
2939 3217 9.715121 TTCCTCGTAAAATAACTGTGAAAGTAT 57.285 29.630 0.00 0.00 38.56 2.12
2940 3218 9.715121 TCCTCGTAAAATAACTGTGAAAGTATT 57.285 29.630 0.00 0.00 38.56 1.89
2949 3227 9.739276 AATAACTGTGAAAGTATTTGATGGAGA 57.261 29.630 0.00 0.00 39.27 3.71
2950 3228 7.678947 AACTGTGAAAGTATTTGATGGAGAG 57.321 36.000 0.00 0.00 39.27 3.20
2951 3229 5.645497 ACTGTGAAAGTATTTGATGGAGAGC 59.355 40.000 0.00 0.00 39.27 4.09
2952 3230 5.559770 TGTGAAAGTATTTGATGGAGAGCA 58.440 37.500 0.00 0.00 39.27 4.26
2953 3231 5.412594 TGTGAAAGTATTTGATGGAGAGCAC 59.587 40.000 0.00 0.00 39.27 4.40
2954 3232 4.943705 TGAAAGTATTTGATGGAGAGCACC 59.056 41.667 0.00 0.00 39.27 5.01
2955 3233 4.851639 AAGTATTTGATGGAGAGCACCT 57.148 40.909 0.00 0.00 0.00 4.00
2956 3234 4.414337 AGTATTTGATGGAGAGCACCTC 57.586 45.455 0.00 0.00 41.22 3.85
2957 3235 4.036518 AGTATTTGATGGAGAGCACCTCT 58.963 43.478 6.18 0.00 44.28 3.69
2958 3236 4.472833 AGTATTTGATGGAGAGCACCTCTT 59.527 41.667 6.18 0.00 41.35 2.85
2959 3237 2.775911 TTGATGGAGAGCACCTCTTG 57.224 50.000 6.18 0.00 41.35 3.02
2960 3238 1.649321 TGATGGAGAGCACCTCTTGT 58.351 50.000 6.18 0.00 41.35 3.16
2961 3239 2.820178 TGATGGAGAGCACCTCTTGTA 58.180 47.619 6.18 0.00 41.35 2.41
2962 3240 3.378512 TGATGGAGAGCACCTCTTGTAT 58.621 45.455 6.18 0.00 41.35 2.29
2963 3241 3.776969 TGATGGAGAGCACCTCTTGTATT 59.223 43.478 6.18 0.00 41.35 1.89
2964 3242 4.225942 TGATGGAGAGCACCTCTTGTATTT 59.774 41.667 6.18 0.00 41.35 1.40
2965 3243 4.207891 TGGAGAGCACCTCTTGTATTTC 57.792 45.455 6.18 0.00 41.35 2.17
2966 3244 3.840666 TGGAGAGCACCTCTTGTATTTCT 59.159 43.478 6.18 0.00 41.35 2.52
2967 3245 4.187694 GGAGAGCACCTCTTGTATTTCTG 58.812 47.826 6.18 0.00 41.35 3.02
2968 3246 4.081420 GGAGAGCACCTCTTGTATTTCTGA 60.081 45.833 6.18 0.00 41.35 3.27
2969 3247 5.396213 GGAGAGCACCTCTTGTATTTCTGAT 60.396 44.000 6.18 0.00 41.35 2.90
2970 3248 6.059787 AGAGCACCTCTTGTATTTCTGATT 57.940 37.500 0.00 0.00 37.60 2.57
2971 3249 6.479884 AGAGCACCTCTTGTATTTCTGATTT 58.520 36.000 0.00 0.00 37.60 2.17
2972 3250 6.944862 AGAGCACCTCTTGTATTTCTGATTTT 59.055 34.615 0.00 0.00 37.60 1.82
2973 3251 8.103305 AGAGCACCTCTTGTATTTCTGATTTTA 58.897 33.333 0.00 0.00 37.60 1.52
2974 3252 8.273780 AGCACCTCTTGTATTTCTGATTTTAG 57.726 34.615 0.00 0.00 0.00 1.85
2975 3253 7.885399 AGCACCTCTTGTATTTCTGATTTTAGT 59.115 33.333 0.00 0.00 0.00 2.24
2976 3254 8.178313 GCACCTCTTGTATTTCTGATTTTAGTC 58.822 37.037 0.00 0.00 0.00 2.59
2977 3255 9.219603 CACCTCTTGTATTTCTGATTTTAGTCA 57.780 33.333 0.00 0.00 0.00 3.41
2978 3256 9.793259 ACCTCTTGTATTTCTGATTTTAGTCAA 57.207 29.630 0.00 0.00 0.00 3.18
2994 3272 9.865321 ATTTTAGTCAAATCAATGTCAGGATTG 57.135 29.630 3.93 0.00 34.17 2.67
2995 3273 8.408043 TTTAGTCAAATCAATGTCAGGATTGT 57.592 30.769 3.93 0.00 35.25 2.71
2996 3274 6.906157 AGTCAAATCAATGTCAGGATTGTT 57.094 33.333 3.93 0.00 35.25 2.83
2997 3275 9.513906 TTAGTCAAATCAATGTCAGGATTGTTA 57.486 29.630 3.93 0.00 35.25 2.41
2998 3276 8.048534 AGTCAAATCAATGTCAGGATTGTTAG 57.951 34.615 3.93 0.00 35.25 2.34
2999 3277 7.884877 AGTCAAATCAATGTCAGGATTGTTAGA 59.115 33.333 3.93 0.00 35.25 2.10
3000 3278 8.680903 GTCAAATCAATGTCAGGATTGTTAGAT 58.319 33.333 3.93 0.00 35.25 1.98
3001 3279 9.904198 TCAAATCAATGTCAGGATTGTTAGATA 57.096 29.630 3.93 0.00 35.25 1.98
3009 3287 9.698309 ATGTCAGGATTGTTAGATAATAACGAG 57.302 33.333 0.00 0.00 0.00 4.18
3010 3288 8.909923 TGTCAGGATTGTTAGATAATAACGAGA 58.090 33.333 0.00 0.00 0.00 4.04
3011 3289 9.745880 GTCAGGATTGTTAGATAATAACGAGAA 57.254 33.333 0.00 0.00 0.00 2.87
3027 3305 8.752766 ATAACGAGAAATAAACGAGACAAAGA 57.247 30.769 0.00 0.00 0.00 2.52
3028 3306 6.692232 ACGAGAAATAAACGAGACAAAGAG 57.308 37.500 0.00 0.00 0.00 2.85
3029 3307 6.444633 ACGAGAAATAAACGAGACAAAGAGA 58.555 36.000 0.00 0.00 0.00 3.10
3030 3308 6.362820 ACGAGAAATAAACGAGACAAAGAGAC 59.637 38.462 0.00 0.00 0.00 3.36
3031 3309 6.362551 CGAGAAATAAACGAGACAAAGAGACA 59.637 38.462 0.00 0.00 0.00 3.41
3032 3310 7.062371 CGAGAAATAAACGAGACAAAGAGACAT 59.938 37.037 0.00 0.00 0.00 3.06
3033 3311 8.023050 AGAAATAAACGAGACAAAGAGACATG 57.977 34.615 0.00 0.00 0.00 3.21
3034 3312 7.872993 AGAAATAAACGAGACAAAGAGACATGA 59.127 33.333 0.00 0.00 0.00 3.07
3035 3313 7.962964 AATAAACGAGACAAAGAGACATGAA 57.037 32.000 0.00 0.00 0.00 2.57
3036 3314 8.553459 AATAAACGAGACAAAGAGACATGAAT 57.447 30.769 0.00 0.00 0.00 2.57
3037 3315 6.867662 AAACGAGACAAAGAGACATGAATT 57.132 33.333 0.00 0.00 0.00 2.17
3038 3316 6.867662 AACGAGACAAAGAGACATGAATTT 57.132 33.333 0.00 0.00 0.00 1.82
3039 3317 6.867662 ACGAGACAAAGAGACATGAATTTT 57.132 33.333 0.00 0.00 0.00 1.82
3040 3318 7.264373 ACGAGACAAAGAGACATGAATTTTT 57.736 32.000 0.00 0.00 0.00 1.94
3041 3319 8.378172 ACGAGACAAAGAGACATGAATTTTTA 57.622 30.769 0.00 0.00 0.00 1.52
3042 3320 8.283291 ACGAGACAAAGAGACATGAATTTTTAC 58.717 33.333 0.00 0.00 0.00 2.01
3043 3321 7.475565 CGAGACAAAGAGACATGAATTTTTACG 59.524 37.037 0.00 0.00 0.00 3.18
3044 3322 8.154649 AGACAAAGAGACATGAATTTTTACGT 57.845 30.769 0.00 0.00 0.00 3.57
3045 3323 8.070171 AGACAAAGAGACATGAATTTTTACGTG 58.930 33.333 0.00 0.00 0.00 4.49
3046 3324 7.138736 ACAAAGAGACATGAATTTTTACGTGG 58.861 34.615 0.00 0.00 0.00 4.94
3047 3325 7.012894 ACAAAGAGACATGAATTTTTACGTGGA 59.987 33.333 0.00 0.00 0.00 4.02
3048 3326 7.504924 AAGAGACATGAATTTTTACGTGGAA 57.495 32.000 0.00 0.00 0.00 3.53
3049 3327 7.504924 AGAGACATGAATTTTTACGTGGAAA 57.495 32.000 0.00 0.00 0.00 3.13
3050 3328 7.360361 AGAGACATGAATTTTTACGTGGAAAC 58.640 34.615 0.00 0.00 0.00 2.78
3051 3329 6.443792 AGACATGAATTTTTACGTGGAAACC 58.556 36.000 0.00 0.00 0.00 3.27
3052 3330 5.534407 ACATGAATTTTTACGTGGAAACCC 58.466 37.500 0.00 0.00 0.00 4.11
3053 3331 5.303333 ACATGAATTTTTACGTGGAAACCCT 59.697 36.000 0.00 0.00 0.00 4.34
3054 3332 5.855740 TGAATTTTTACGTGGAAACCCTT 57.144 34.783 0.00 0.00 0.00 3.95
3055 3333 5.593010 TGAATTTTTACGTGGAAACCCTTG 58.407 37.500 0.00 0.00 0.00 3.61
3056 3334 3.439895 TTTTTACGTGGAAACCCTTGC 57.560 42.857 0.00 0.00 0.00 4.01
3057 3335 0.945813 TTTACGTGGAAACCCTTGCG 59.054 50.000 0.00 0.00 0.00 4.85
3058 3336 0.885596 TTACGTGGAAACCCTTGCGG 60.886 55.000 0.00 0.00 37.81 5.69
3068 3346 4.492604 CCTTGCGGGAGAAAACCA 57.507 55.556 0.00 0.00 37.23 3.67
3069 3347 1.956802 CCTTGCGGGAGAAAACCAC 59.043 57.895 0.00 0.00 37.23 4.16
3070 3348 1.574428 CTTGCGGGAGAAAACCACG 59.426 57.895 0.00 0.00 0.00 4.94
3071 3349 1.852067 CTTGCGGGAGAAAACCACGG 61.852 60.000 0.00 0.00 0.00 4.94
3072 3350 2.031465 GCGGGAGAAAACCACGGA 59.969 61.111 0.00 0.00 0.00 4.69
3073 3351 2.322830 GCGGGAGAAAACCACGGAC 61.323 63.158 0.00 0.00 0.00 4.79
3074 3352 2.025418 CGGGAGAAAACCACGGACG 61.025 63.158 0.00 0.00 0.00 4.79
3075 3353 2.322830 GGGAGAAAACCACGGACGC 61.323 63.158 0.00 0.00 0.00 5.19
3076 3354 1.595929 GGAGAAAACCACGGACGCA 60.596 57.895 0.00 0.00 0.00 5.24
3077 3355 1.568025 GAGAAAACCACGGACGCAC 59.432 57.895 0.00 0.00 0.00 5.34
3078 3356 2.154427 GAGAAAACCACGGACGCACG 62.154 60.000 0.00 0.00 40.31 5.34
3079 3357 2.202905 AAAACCACGGACGCACGA 60.203 55.556 6.34 0.00 37.61 4.35
3080 3358 1.764180 GAAAACCACGGACGCACGAA 61.764 55.000 6.34 0.00 37.61 3.85
3081 3359 1.768112 AAAACCACGGACGCACGAAG 61.768 55.000 6.34 0.00 37.61 3.79
3082 3360 4.657824 ACCACGGACGCACGAAGG 62.658 66.667 6.34 9.52 38.10 3.46
3087 3365 2.970324 GGACGCACGAAGGCACAA 60.970 61.111 0.00 0.00 0.00 3.33
3088 3366 2.325082 GGACGCACGAAGGCACAAT 61.325 57.895 0.00 0.00 0.00 2.71
3089 3367 1.132640 GACGCACGAAGGCACAATC 59.867 57.895 0.00 0.00 0.00 2.67
3090 3368 1.565156 GACGCACGAAGGCACAATCA 61.565 55.000 0.00 0.00 0.00 2.57
3091 3369 1.154413 CGCACGAAGGCACAATCAC 60.154 57.895 0.00 0.00 0.00 3.06
3092 3370 1.568612 CGCACGAAGGCACAATCACT 61.569 55.000 0.00 0.00 0.00 3.41
3093 3371 1.438651 GCACGAAGGCACAATCACTA 58.561 50.000 0.00 0.00 0.00 2.74
3094 3372 2.009774 GCACGAAGGCACAATCACTAT 58.990 47.619 0.00 0.00 0.00 2.12
3095 3373 2.223112 GCACGAAGGCACAATCACTATG 60.223 50.000 0.00 0.00 0.00 2.23
3096 3374 3.261580 CACGAAGGCACAATCACTATGA 58.738 45.455 0.00 0.00 0.00 2.15
3097 3375 3.873361 CACGAAGGCACAATCACTATGAT 59.127 43.478 0.00 0.00 39.09 2.45
3098 3376 3.873361 ACGAAGGCACAATCACTATGATG 59.127 43.478 0.00 0.00 37.15 3.07
3099 3377 3.249320 CGAAGGCACAATCACTATGATGG 59.751 47.826 0.00 0.00 37.15 3.51
3100 3378 4.454678 GAAGGCACAATCACTATGATGGA 58.545 43.478 0.09 0.00 37.15 3.41
3101 3379 4.082665 AGGCACAATCACTATGATGGAG 57.917 45.455 0.09 0.00 37.15 3.86
3102 3380 3.144506 GGCACAATCACTATGATGGAGG 58.855 50.000 0.09 0.00 37.15 4.30
3103 3381 3.181451 GGCACAATCACTATGATGGAGGA 60.181 47.826 0.09 0.00 37.15 3.71
3104 3382 4.063689 GCACAATCACTATGATGGAGGAG 58.936 47.826 0.09 0.00 37.15 3.69
3105 3383 4.444022 GCACAATCACTATGATGGAGGAGT 60.444 45.833 0.09 0.00 37.15 3.85
3106 3384 5.221521 GCACAATCACTATGATGGAGGAGTA 60.222 44.000 0.09 0.00 37.15 2.59
3107 3385 6.519721 GCACAATCACTATGATGGAGGAGTAT 60.520 42.308 0.09 0.00 37.15 2.12
3108 3386 7.448420 CACAATCACTATGATGGAGGAGTATT 58.552 38.462 0.09 0.00 37.15 1.89
3109 3387 8.588472 CACAATCACTATGATGGAGGAGTATTA 58.412 37.037 0.09 0.00 37.15 0.98
3110 3388 8.589338 ACAATCACTATGATGGAGGAGTATTAC 58.411 37.037 0.09 0.00 37.15 1.89
3111 3389 8.588472 CAATCACTATGATGGAGGAGTATTACA 58.412 37.037 0.00 0.00 37.15 2.41
3112 3390 8.727100 ATCACTATGATGGAGGAGTATTACAA 57.273 34.615 0.00 0.00 35.43 2.41
3113 3391 8.183104 TCACTATGATGGAGGAGTATTACAAG 57.817 38.462 0.00 0.00 0.00 3.16
3114 3392 6.870965 CACTATGATGGAGGAGTATTACAAGC 59.129 42.308 0.00 0.00 0.00 4.01
3115 3393 5.894298 ATGATGGAGGAGTATTACAAGCA 57.106 39.130 0.00 0.00 0.00 3.91
3116 3394 5.023533 TGATGGAGGAGTATTACAAGCAC 57.976 43.478 0.00 0.00 0.00 4.40
3117 3395 3.520290 TGGAGGAGTATTACAAGCACG 57.480 47.619 0.00 0.00 0.00 5.34
3118 3396 3.093814 TGGAGGAGTATTACAAGCACGA 58.906 45.455 0.00 0.00 0.00 4.35
3119 3397 3.130516 TGGAGGAGTATTACAAGCACGAG 59.869 47.826 0.00 0.00 0.00 4.18
3120 3398 3.380637 GGAGGAGTATTACAAGCACGAGA 59.619 47.826 0.00 0.00 0.00 4.04
3121 3399 4.352887 GAGGAGTATTACAAGCACGAGAC 58.647 47.826 0.00 0.00 0.00 3.36
3122 3400 3.106672 GGAGTATTACAAGCACGAGACG 58.893 50.000 0.00 0.00 0.00 4.18
3123 3401 3.181503 GGAGTATTACAAGCACGAGACGA 60.182 47.826 0.00 0.00 0.00 4.20
3124 3402 4.017380 AGTATTACAAGCACGAGACGAG 57.983 45.455 0.00 0.00 0.00 4.18
3125 3403 3.688185 AGTATTACAAGCACGAGACGAGA 59.312 43.478 0.00 0.00 0.00 4.04
3126 3404 2.613730 TTACAAGCACGAGACGAGAG 57.386 50.000 0.00 0.00 0.00 3.20
3127 3405 1.804601 TACAAGCACGAGACGAGAGA 58.195 50.000 0.00 0.00 0.00 3.10
3128 3406 0.238817 ACAAGCACGAGACGAGAGAC 59.761 55.000 0.00 0.00 0.00 3.36
3129 3407 0.455295 CAAGCACGAGACGAGAGACC 60.455 60.000 0.00 0.00 0.00 3.85
3130 3408 1.913451 AAGCACGAGACGAGAGACCG 61.913 60.000 0.00 0.00 0.00 4.79
3131 3409 2.678956 GCACGAGACGAGAGACCGT 61.679 63.158 0.00 0.00 46.43 4.83
3137 3415 4.305011 ACGAGAGACCGTCTGAGG 57.695 61.111 5.57 0.00 38.56 3.86
3139 3417 0.956410 ACGAGAGACCGTCTGAGGTG 60.956 60.000 5.57 0.00 46.09 4.00
3140 3418 1.509004 GAGAGACCGTCTGAGGTGC 59.491 63.158 5.57 0.00 46.09 5.01
3141 3419 2.179517 GAGACCGTCTGAGGTGCG 59.820 66.667 5.57 0.00 46.09 5.34
3142 3420 2.282251 AGACCGTCTGAGGTGCGA 60.282 61.111 0.00 0.00 46.09 5.10
3143 3421 2.126424 GACCGTCTGAGGTGCGAC 60.126 66.667 3.94 0.00 46.09 5.19
3144 3422 2.597805 ACCGTCTGAGGTGCGACT 60.598 61.111 0.00 0.00 44.07 4.18
3145 3423 1.303074 ACCGTCTGAGGTGCGACTA 60.303 57.895 0.00 0.00 44.07 2.59
3146 3424 1.136984 CCGTCTGAGGTGCGACTAC 59.863 63.158 0.00 0.00 0.00 2.73
3147 3425 1.583495 CCGTCTGAGGTGCGACTACA 61.583 60.000 0.00 0.00 0.00 2.74
3148 3426 0.452184 CGTCTGAGGTGCGACTACAT 59.548 55.000 0.00 0.00 0.00 2.29
3149 3427 1.795525 CGTCTGAGGTGCGACTACATG 60.796 57.143 0.00 0.00 0.00 3.21
3150 3428 0.817654 TCTGAGGTGCGACTACATGG 59.182 55.000 0.00 0.00 0.00 3.66
3151 3429 0.179100 CTGAGGTGCGACTACATGGG 60.179 60.000 0.00 0.00 0.00 4.00
3152 3430 1.144057 GAGGTGCGACTACATGGGG 59.856 63.158 0.00 0.00 0.00 4.96
3153 3431 1.612442 AGGTGCGACTACATGGGGT 60.612 57.895 0.00 0.00 0.00 4.95
3154 3432 0.324923 AGGTGCGACTACATGGGGTA 60.325 55.000 0.00 0.00 0.00 3.69
3155 3433 0.756903 GGTGCGACTACATGGGGTAT 59.243 55.000 0.00 0.00 0.00 2.73
3156 3434 1.965643 GGTGCGACTACATGGGGTATA 59.034 52.381 0.00 0.00 0.00 1.47
3157 3435 2.565834 GGTGCGACTACATGGGGTATAT 59.434 50.000 0.00 0.00 0.00 0.86
3158 3436 3.765511 GGTGCGACTACATGGGGTATATA 59.234 47.826 0.00 0.00 0.00 0.86
3159 3437 4.404715 GGTGCGACTACATGGGGTATATAT 59.595 45.833 0.00 0.00 0.00 0.86
3160 3438 5.348986 GTGCGACTACATGGGGTATATATG 58.651 45.833 0.00 0.00 0.00 1.78
3161 3439 5.126545 GTGCGACTACATGGGGTATATATGA 59.873 44.000 0.00 0.00 0.00 2.15
3162 3440 5.359860 TGCGACTACATGGGGTATATATGAG 59.640 44.000 0.00 0.00 0.00 2.90
3163 3441 5.221263 GCGACTACATGGGGTATATATGAGG 60.221 48.000 0.00 0.00 0.00 3.86
3164 3442 5.302059 CGACTACATGGGGTATATATGAGGG 59.698 48.000 0.00 0.00 0.00 4.30
3165 3443 4.969359 ACTACATGGGGTATATATGAGGGC 59.031 45.833 0.00 0.00 0.00 5.19
3166 3444 3.814284 ACATGGGGTATATATGAGGGCA 58.186 45.455 0.00 0.00 0.00 5.36
3167 3445 4.183116 ACATGGGGTATATATGAGGGCAA 58.817 43.478 0.00 0.00 0.00 4.52
3168 3446 4.795714 ACATGGGGTATATATGAGGGCAAT 59.204 41.667 0.00 0.00 0.00 3.56
3169 3447 5.976244 ACATGGGGTATATATGAGGGCAATA 59.024 40.000 0.00 0.00 0.00 1.90
3170 3448 5.968676 TGGGGTATATATGAGGGCAATAC 57.031 43.478 0.00 0.00 0.00 1.89
3171 3449 5.354848 TGGGGTATATATGAGGGCAATACA 58.645 41.667 0.00 0.00 0.00 2.29
3172 3450 5.976244 TGGGGTATATATGAGGGCAATACAT 59.024 40.000 0.00 0.00 0.00 2.29
3173 3451 6.126507 TGGGGTATATATGAGGGCAATACATG 60.127 42.308 0.00 0.00 0.00 3.21
3174 3452 6.101150 GGGGTATATATGAGGGCAATACATGA 59.899 42.308 0.00 0.00 0.00 3.07
3175 3453 7.220030 GGGTATATATGAGGGCAATACATGAG 58.780 42.308 0.00 0.00 0.00 2.90
3176 3454 7.071196 GGGTATATATGAGGGCAATACATGAGA 59.929 40.741 0.00 0.00 0.00 3.27
3177 3455 8.147058 GGTATATATGAGGGCAATACATGAGAG 58.853 40.741 0.00 0.00 0.00 3.20
3178 3456 7.746243 ATATATGAGGGCAATACATGAGAGT 57.254 36.000 0.00 0.00 0.00 3.24
3179 3457 3.827008 TGAGGGCAATACATGAGAGTC 57.173 47.619 0.00 0.00 0.00 3.36
3180 3458 2.435805 TGAGGGCAATACATGAGAGTCC 59.564 50.000 0.00 0.00 0.00 3.85
3181 3459 2.703007 GAGGGCAATACATGAGAGTCCT 59.297 50.000 0.00 2.08 0.00 3.85
3182 3460 3.118531 AGGGCAATACATGAGAGTCCTT 58.881 45.455 0.00 0.00 0.00 3.36
3183 3461 3.118112 AGGGCAATACATGAGAGTCCTTG 60.118 47.826 0.00 0.00 0.00 3.61
3184 3462 3.209410 GGCAATACATGAGAGTCCTTGG 58.791 50.000 0.00 0.00 0.00 3.61
3185 3463 3.118261 GGCAATACATGAGAGTCCTTGGA 60.118 47.826 0.00 0.00 0.00 3.53
3186 3464 4.125703 GCAATACATGAGAGTCCTTGGAG 58.874 47.826 0.00 0.00 0.00 3.86
3187 3465 4.701765 CAATACATGAGAGTCCTTGGAGG 58.298 47.826 0.00 0.00 36.46 4.30
3188 3466 2.630889 ACATGAGAGTCCTTGGAGGA 57.369 50.000 0.00 0.00 43.43 3.71
3202 3480 4.411256 TTGGAGGACAAGTAAACGAGTT 57.589 40.909 0.00 0.00 33.18 3.01
3203 3481 3.724374 TGGAGGACAAGTAAACGAGTTG 58.276 45.455 0.00 0.00 43.22 3.16
3216 3494 3.664930 GAGTTGTACTCGTACGCGT 57.335 52.632 19.17 19.17 35.28 6.01
3217 3495 1.518286 GAGTTGTACTCGTACGCGTC 58.482 55.000 18.63 6.85 35.28 5.19
3218 3496 0.179240 AGTTGTACTCGTACGCGTCG 60.179 55.000 18.63 19.59 38.85 5.12
3219 3497 1.122419 GTTGTACTCGTACGCGTCGG 61.122 60.000 18.63 9.43 38.85 4.79
3220 3498 1.565156 TTGTACTCGTACGCGTCGGT 61.565 55.000 18.63 19.29 38.85 4.69
3221 3499 0.734597 TGTACTCGTACGCGTCGGTA 60.735 55.000 18.63 18.38 38.85 4.02
3222 3500 0.314339 GTACTCGTACGCGTCGGTAC 60.314 60.000 18.63 23.99 39.47 3.34
3223 3501 1.418342 TACTCGTACGCGTCGGTACC 61.418 60.000 18.63 0.16 39.65 3.34
3224 3502 2.739704 CTCGTACGCGTCGGTACCA 61.740 63.158 18.63 0.00 39.65 3.25
3225 3503 2.175566 CGTACGCGTCGGTACCAA 59.824 61.111 18.63 0.00 39.65 3.67
3226 3504 2.145905 CGTACGCGTCGGTACCAAC 61.146 63.158 18.63 4.42 39.65 3.77
3227 3505 2.145905 GTACGCGTCGGTACCAACG 61.146 63.158 21.11 21.11 41.68 4.10
3231 3509 3.627714 CGTCGGTACCAACGCAAA 58.372 55.556 13.28 0.00 31.48 3.68
3232 3510 1.489824 CGTCGGTACCAACGCAAAG 59.510 57.895 13.28 0.00 31.48 2.77
3233 3511 1.864176 GTCGGTACCAACGCAAAGG 59.136 57.895 13.54 0.00 0.00 3.11
3234 3512 1.962306 TCGGTACCAACGCAAAGGC 60.962 57.895 13.54 0.00 0.00 4.35
3235 3513 2.959372 GGTACCAACGCAAAGGCC 59.041 61.111 7.15 0.00 36.38 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.212906 CTCCAGCAGCCGCGCTATA 62.213 63.158 5.56 1.56 45.49 1.31
48 49 4.622456 AAACCTGTTTGCCGCGCG 62.622 61.111 25.67 25.67 0.00 6.86
49 50 1.880796 AAAAACCTGTTTGCCGCGC 60.881 52.632 0.00 0.00 32.36 6.86
50 51 4.411136 AAAAACCTGTTTGCCGCG 57.589 50.000 0.00 0.00 32.36 6.46
78 79 4.166011 CCAACAGCCGCGCTAAGC 62.166 66.667 5.56 5.74 36.40 3.09
79 80 2.434185 TCCAACAGCCGCGCTAAG 60.434 61.111 5.56 0.00 36.40 2.18
80 81 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
81 82 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
82 83 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
83 84 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
84 85 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
85 86 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
86 87 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
97 98 3.508762 TCGTCGGTTTTCTTAGAGCATC 58.491 45.455 0.00 0.00 0.00 3.91
98 99 3.587797 TCGTCGGTTTTCTTAGAGCAT 57.412 42.857 0.00 0.00 0.00 3.79
99 100 3.192844 AGATCGTCGGTTTTCTTAGAGCA 59.807 43.478 0.00 0.00 0.00 4.26
100 101 3.771798 AGATCGTCGGTTTTCTTAGAGC 58.228 45.455 0.00 0.00 0.00 4.09
101 102 7.419204 AGATTAGATCGTCGGTTTTCTTAGAG 58.581 38.462 0.00 0.00 0.00 2.43
102 103 7.066645 TGAGATTAGATCGTCGGTTTTCTTAGA 59.933 37.037 0.00 0.00 0.00 2.10
103 104 7.194278 TGAGATTAGATCGTCGGTTTTCTTAG 58.806 38.462 0.00 0.00 0.00 2.18
107 108 5.175856 CCATGAGATTAGATCGTCGGTTTTC 59.824 44.000 0.00 0.00 0.00 2.29
122 123 0.467384 CCTGAGGTCGCCATGAGATT 59.533 55.000 0.00 0.00 0.00 2.40
207 208 2.971598 CGAGGGTGGAAGGCATGGT 61.972 63.158 0.00 0.00 0.00 3.55
297 298 2.197605 GGAGAGTAGGAGAGCGGGC 61.198 68.421 0.00 0.00 0.00 6.13
718 761 2.910479 TCACAGTGGGCGTCGAGT 60.910 61.111 0.00 0.00 0.00 4.18
766 809 1.346395 ACCAGCACCACGAAGTTATCA 59.654 47.619 0.00 0.00 41.61 2.15
841 887 1.870055 GCACGGTTACCAGGTCGAGA 61.870 60.000 6.19 0.00 0.00 4.04
898 944 2.170187 CTCCATAGCCTTCTTCAGCAGT 59.830 50.000 0.00 0.00 0.00 4.40
1004 1057 0.605589 CTTGACCTTCCCAACGTCCC 60.606 60.000 0.00 0.00 0.00 4.46
1011 1064 1.460255 CTTGGCCTTGACCTTCCCA 59.540 57.895 3.32 0.00 0.00 4.37
1198 1272 2.832733 GGTAGTTTGTCTGGTAGGAGCT 59.167 50.000 0.00 0.00 0.00 4.09
1203 1277 2.298163 ACCACGGTAGTTTGTCTGGTAG 59.702 50.000 0.00 0.00 0.00 3.18
1686 1770 4.980805 TGCACCGCCACGTTCTCC 62.981 66.667 0.00 0.00 0.00 3.71
1690 1774 4.988598 CCTCTGCACCGCCACGTT 62.989 66.667 0.00 0.00 0.00 3.99
2229 2362 8.567285 AAACTTGGATCCACTGATTTTAGTAG 57.433 34.615 15.91 7.04 0.00 2.57
2277 2418 6.913170 AGTGCACCAAACAAAAGTCTATATG 58.087 36.000 14.63 0.00 0.00 1.78
2344 2534 7.222224 GGTTCAACCACAATATACTAACTCGAG 59.778 40.741 11.84 11.84 38.42 4.04
2370 2560 6.415702 CCACACATTACACGAAATTATACGG 58.584 40.000 0.00 0.00 0.00 4.02
2444 2643 5.979517 GCAACTCAAAAATAGGCATATCCAC 59.020 40.000 0.00 0.00 37.29 4.02
2483 2683 7.981142 AGAGACAAAAACGATTACAAAACTCA 58.019 30.769 0.00 0.00 0.00 3.41
2519 2725 8.557864 TCGGTCAAAAACGATTACAAAAGAATA 58.442 29.630 0.00 0.00 33.69 1.75
2555 2761 5.687166 AATGGTGATCTTCTACGGGTAAA 57.313 39.130 0.00 0.00 0.00 2.01
2580 2833 1.586422 GCCGAAGAGCATGCTCATTA 58.414 50.000 40.91 0.00 44.99 1.90
2617 2870 0.036010 CGGGCAGGTGAAGAACAGAT 60.036 55.000 0.00 0.00 0.00 2.90
2638 2891 3.361158 TCCACATGCCGTTTGCCG 61.361 61.111 0.00 0.00 40.16 5.69
2639 2892 2.258286 GTCCACATGCCGTTTGCC 59.742 61.111 0.00 0.00 40.16 4.52
2640 2893 1.081242 CAGTCCACATGCCGTTTGC 60.081 57.895 0.00 0.00 41.77 3.68
2641 2894 1.081242 GCAGTCCACATGCCGTTTG 60.081 57.895 0.00 0.00 37.73 2.93
2642 2895 1.228245 AGCAGTCCACATGCCGTTT 60.228 52.632 0.00 0.00 44.97 3.60
2643 2896 1.672356 GAGCAGTCCACATGCCGTT 60.672 57.895 0.00 0.00 44.97 4.44
2644 2897 2.046892 GAGCAGTCCACATGCCGT 60.047 61.111 0.00 0.00 44.97 5.68
2645 2898 1.812922 GAGAGCAGTCCACATGCCG 60.813 63.158 0.00 0.00 44.97 5.69
2646 2899 0.035630 AAGAGAGCAGTCCACATGCC 60.036 55.000 0.00 0.00 44.97 4.40
2647 2900 1.818642 AAAGAGAGCAGTCCACATGC 58.181 50.000 0.00 0.00 44.18 4.06
2648 2901 3.369147 CGTAAAAGAGAGCAGTCCACATG 59.631 47.826 0.00 0.00 0.00 3.21
2649 2902 3.589988 CGTAAAAGAGAGCAGTCCACAT 58.410 45.455 0.00 0.00 0.00 3.21
2650 2903 2.866460 GCGTAAAAGAGAGCAGTCCACA 60.866 50.000 0.00 0.00 0.00 4.17
2651 2904 1.727335 GCGTAAAAGAGAGCAGTCCAC 59.273 52.381 0.00 0.00 0.00 4.02
2652 2905 1.337823 GGCGTAAAAGAGAGCAGTCCA 60.338 52.381 0.00 0.00 0.00 4.02
2653 2906 1.360820 GGCGTAAAAGAGAGCAGTCC 58.639 55.000 0.00 0.00 0.00 3.85
2654 2907 1.337823 TGGGCGTAAAAGAGAGCAGTC 60.338 52.381 0.00 0.00 0.00 3.51
2655 2908 0.685097 TGGGCGTAAAAGAGAGCAGT 59.315 50.000 0.00 0.00 0.00 4.40
2656 2909 2.029838 ATGGGCGTAAAAGAGAGCAG 57.970 50.000 0.00 0.00 0.00 4.24
2781 3044 8.701908 AGATTCCATGCATACTTTTGATACAT 57.298 30.769 0.00 0.00 0.00 2.29
2800 3063 3.198872 GGGACGAGTCAATCAAGATTCC 58.801 50.000 5.55 0.00 0.00 3.01
2825 3089 1.332065 TGTAATGTGTGTGTTGTGCGG 59.668 47.619 0.00 0.00 0.00 5.69
2835 3099 6.640499 CCACCAGTGTAAAATTGTAATGTGTG 59.360 38.462 0.00 0.00 0.00 3.82
2836 3100 6.737346 GCCACCAGTGTAAAATTGTAATGTGT 60.737 38.462 0.00 0.00 0.00 3.72
2846 3110 2.238521 CAGTGGCCACCAGTGTAAAAT 58.761 47.619 32.29 6.70 46.58 1.82
2853 3117 1.065199 CATATGTCAGTGGCCACCAGT 60.065 52.381 32.29 11.73 37.73 4.00
2854 3118 1.065199 ACATATGTCAGTGGCCACCAG 60.065 52.381 32.29 24.29 32.34 4.00
2855 3119 0.991146 ACATATGTCAGTGGCCACCA 59.009 50.000 32.29 22.85 0.00 4.17
2856 3120 3.275617 TTACATATGTCAGTGGCCACC 57.724 47.619 32.29 17.65 0.00 4.61
2857 3121 4.261801 ACTTTACATATGTCAGTGGCCAC 58.738 43.478 29.22 29.22 0.00 5.01
2905 3183 8.680001 ACAGTTATTTTACGAGGAAACACTTTT 58.320 29.630 0.00 0.00 0.00 2.27
2932 3210 5.189180 AGGTGCTCTCCATCAAATACTTTC 58.811 41.667 0.00 0.00 0.00 2.62
2933 3211 5.045286 AGAGGTGCTCTCCATCAAATACTTT 60.045 40.000 4.43 0.00 43.44 2.66
2934 3212 4.472833 AGAGGTGCTCTCCATCAAATACTT 59.527 41.667 4.43 0.00 43.44 2.24
2935 3213 4.036518 AGAGGTGCTCTCCATCAAATACT 58.963 43.478 4.43 0.00 43.44 2.12
2936 3214 4.414337 AGAGGTGCTCTCCATCAAATAC 57.586 45.455 4.43 0.00 43.44 1.89
2937 3215 4.225942 ACAAGAGGTGCTCTCCATCAAATA 59.774 41.667 0.00 0.00 40.28 1.40
2938 3216 3.009916 ACAAGAGGTGCTCTCCATCAAAT 59.990 43.478 0.00 0.00 40.28 2.32
2939 3217 2.373169 ACAAGAGGTGCTCTCCATCAAA 59.627 45.455 0.00 0.00 40.28 2.69
2940 3218 1.980765 ACAAGAGGTGCTCTCCATCAA 59.019 47.619 0.00 0.00 40.28 2.57
2941 3219 1.649321 ACAAGAGGTGCTCTCCATCA 58.351 50.000 0.00 0.00 40.28 3.07
2942 3220 4.414337 AATACAAGAGGTGCTCTCCATC 57.586 45.455 0.00 0.00 40.28 3.51
2943 3221 4.472833 AGAAATACAAGAGGTGCTCTCCAT 59.527 41.667 0.00 0.00 40.28 3.41
2944 3222 3.840666 AGAAATACAAGAGGTGCTCTCCA 59.159 43.478 0.00 0.00 40.28 3.86
2945 3223 4.081420 TCAGAAATACAAGAGGTGCTCTCC 60.081 45.833 0.00 0.00 40.28 3.71
2946 3224 5.078411 TCAGAAATACAAGAGGTGCTCTC 57.922 43.478 0.00 0.32 40.28 3.20
2947 3225 5.690464 ATCAGAAATACAAGAGGTGCTCT 57.310 39.130 0.00 0.00 43.37 4.09
2948 3226 6.749923 AAATCAGAAATACAAGAGGTGCTC 57.250 37.500 0.00 0.00 0.00 4.26
2949 3227 7.885399 ACTAAAATCAGAAATACAAGAGGTGCT 59.115 33.333 0.00 0.00 0.00 4.40
2950 3228 8.045176 ACTAAAATCAGAAATACAAGAGGTGC 57.955 34.615 0.00 0.00 0.00 5.01
2951 3229 9.219603 TGACTAAAATCAGAAATACAAGAGGTG 57.780 33.333 0.00 0.00 0.00 4.00
2952 3230 9.793259 TTGACTAAAATCAGAAATACAAGAGGT 57.207 29.630 0.00 0.00 0.00 3.85
2968 3246 9.865321 CAATCCTGACATTGATTTGACTAAAAT 57.135 29.630 0.00 0.00 41.33 1.82
2969 3247 8.859090 ACAATCCTGACATTGATTTGACTAAAA 58.141 29.630 0.25 0.00 37.24 1.52
2970 3248 8.408043 ACAATCCTGACATTGATTTGACTAAA 57.592 30.769 0.25 0.00 37.24 1.85
2971 3249 8.408043 AACAATCCTGACATTGATTTGACTAA 57.592 30.769 0.25 0.00 37.24 2.24
2972 3250 9.166173 CTAACAATCCTGACATTGATTTGACTA 57.834 33.333 0.25 0.00 37.24 2.59
2973 3251 6.906157 AACAATCCTGACATTGATTTGACT 57.094 33.333 0.25 0.00 37.24 3.41
2974 3252 8.044060 TCTAACAATCCTGACATTGATTTGAC 57.956 34.615 0.25 0.00 37.24 3.18
2975 3253 8.812513 ATCTAACAATCCTGACATTGATTTGA 57.187 30.769 0.25 0.00 37.24 2.69
2983 3261 9.698309 CTCGTTATTATCTAACAATCCTGACAT 57.302 33.333 0.00 0.00 0.00 3.06
2984 3262 8.909923 TCTCGTTATTATCTAACAATCCTGACA 58.090 33.333 0.00 0.00 0.00 3.58
2985 3263 9.745880 TTCTCGTTATTATCTAACAATCCTGAC 57.254 33.333 0.00 0.00 0.00 3.51
3001 3279 9.199982 TCTTTGTCTCGTTTATTTCTCGTTATT 57.800 29.630 0.00 0.00 0.00 1.40
3002 3280 8.752766 TCTTTGTCTCGTTTATTTCTCGTTAT 57.247 30.769 0.00 0.00 0.00 1.89
3003 3281 8.077991 TCTCTTTGTCTCGTTTATTTCTCGTTA 58.922 33.333 0.00 0.00 0.00 3.18
3004 3282 6.921857 TCTCTTTGTCTCGTTTATTTCTCGTT 59.078 34.615 0.00 0.00 0.00 3.85
3005 3283 6.362820 GTCTCTTTGTCTCGTTTATTTCTCGT 59.637 38.462 0.00 0.00 0.00 4.18
3006 3284 6.362551 TGTCTCTTTGTCTCGTTTATTTCTCG 59.637 38.462 0.00 0.00 0.00 4.04
3007 3285 7.639162 TGTCTCTTTGTCTCGTTTATTTCTC 57.361 36.000 0.00 0.00 0.00 2.87
3008 3286 7.872993 TCATGTCTCTTTGTCTCGTTTATTTCT 59.127 33.333 0.00 0.00 0.00 2.52
3009 3287 8.018677 TCATGTCTCTTTGTCTCGTTTATTTC 57.981 34.615 0.00 0.00 0.00 2.17
3010 3288 7.962964 TCATGTCTCTTTGTCTCGTTTATTT 57.037 32.000 0.00 0.00 0.00 1.40
3011 3289 7.962964 TTCATGTCTCTTTGTCTCGTTTATT 57.037 32.000 0.00 0.00 0.00 1.40
3012 3290 8.553459 AATTCATGTCTCTTTGTCTCGTTTAT 57.447 30.769 0.00 0.00 0.00 1.40
3013 3291 7.962964 AATTCATGTCTCTTTGTCTCGTTTA 57.037 32.000 0.00 0.00 0.00 2.01
3014 3292 6.867662 AATTCATGTCTCTTTGTCTCGTTT 57.132 33.333 0.00 0.00 0.00 3.60
3015 3293 6.867662 AAATTCATGTCTCTTTGTCTCGTT 57.132 33.333 0.00 0.00 0.00 3.85
3016 3294 6.867662 AAAATTCATGTCTCTTTGTCTCGT 57.132 33.333 0.00 0.00 0.00 4.18
3017 3295 7.475565 CGTAAAAATTCATGTCTCTTTGTCTCG 59.524 37.037 0.00 0.00 0.00 4.04
3018 3296 8.283291 ACGTAAAAATTCATGTCTCTTTGTCTC 58.717 33.333 0.00 0.00 0.00 3.36
3019 3297 8.070171 CACGTAAAAATTCATGTCTCTTTGTCT 58.930 33.333 0.00 0.00 0.00 3.41
3020 3298 7.323656 CCACGTAAAAATTCATGTCTCTTTGTC 59.676 37.037 0.00 0.00 0.00 3.18
3021 3299 7.012894 TCCACGTAAAAATTCATGTCTCTTTGT 59.987 33.333 0.00 0.00 0.00 2.83
3022 3300 7.359595 TCCACGTAAAAATTCATGTCTCTTTG 58.640 34.615 0.00 0.00 0.00 2.77
3023 3301 7.504924 TCCACGTAAAAATTCATGTCTCTTT 57.495 32.000 0.00 0.00 0.00 2.52
3024 3302 7.504924 TTCCACGTAAAAATTCATGTCTCTT 57.495 32.000 0.00 0.00 0.00 2.85
3025 3303 7.360361 GTTTCCACGTAAAAATTCATGTCTCT 58.640 34.615 0.00 0.00 0.00 3.10
3026 3304 6.581166 GGTTTCCACGTAAAAATTCATGTCTC 59.419 38.462 0.00 0.00 0.00 3.36
3027 3305 6.443792 GGTTTCCACGTAAAAATTCATGTCT 58.556 36.000 0.00 0.00 0.00 3.41
3028 3306 5.631929 GGGTTTCCACGTAAAAATTCATGTC 59.368 40.000 0.00 0.00 0.00 3.06
3029 3307 5.303333 AGGGTTTCCACGTAAAAATTCATGT 59.697 36.000 0.00 0.00 34.83 3.21
3030 3308 5.778862 AGGGTTTCCACGTAAAAATTCATG 58.221 37.500 0.00 0.00 34.83 3.07
3031 3309 6.220201 CAAGGGTTTCCACGTAAAAATTCAT 58.780 36.000 0.00 0.00 34.83 2.57
3032 3310 5.593010 CAAGGGTTTCCACGTAAAAATTCA 58.407 37.500 0.00 0.00 34.83 2.57
3033 3311 4.446385 GCAAGGGTTTCCACGTAAAAATTC 59.554 41.667 0.00 0.00 34.83 2.17
3034 3312 4.373527 GCAAGGGTTTCCACGTAAAAATT 58.626 39.130 0.00 0.00 34.83 1.82
3035 3313 3.551250 CGCAAGGGTTTCCACGTAAAAAT 60.551 43.478 0.00 0.00 34.83 1.82
3036 3314 2.223525 CGCAAGGGTTTCCACGTAAAAA 60.224 45.455 0.00 0.00 34.83 1.94
3037 3315 1.334243 CGCAAGGGTTTCCACGTAAAA 59.666 47.619 0.00 0.00 34.83 1.52
3038 3316 0.945813 CGCAAGGGTTTCCACGTAAA 59.054 50.000 0.00 0.00 34.83 2.01
3039 3317 2.619362 CGCAAGGGTTTCCACGTAA 58.381 52.632 0.00 0.00 34.83 3.18
3040 3318 4.364817 CGCAAGGGTTTCCACGTA 57.635 55.556 0.00 0.00 34.83 3.57
3052 3330 1.574428 CGTGGTTTTCTCCCGCAAG 59.426 57.895 0.00 0.00 32.61 4.01
3053 3331 1.894756 CCGTGGTTTTCTCCCGCAA 60.895 57.895 0.00 0.00 32.61 4.85
3054 3332 2.281208 CCGTGGTTTTCTCCCGCA 60.281 61.111 0.00 0.00 32.61 5.69
3055 3333 2.031465 TCCGTGGTTTTCTCCCGC 59.969 61.111 0.00 0.00 0.00 6.13
3056 3334 2.025418 CGTCCGTGGTTTTCTCCCG 61.025 63.158 0.00 0.00 0.00 5.14
3057 3335 2.322830 GCGTCCGTGGTTTTCTCCC 61.323 63.158 0.00 0.00 0.00 4.30
3058 3336 1.595929 TGCGTCCGTGGTTTTCTCC 60.596 57.895 0.00 0.00 0.00 3.71
3059 3337 1.568025 GTGCGTCCGTGGTTTTCTC 59.432 57.895 0.00 0.00 0.00 2.87
3060 3338 2.241880 CGTGCGTCCGTGGTTTTCT 61.242 57.895 0.00 0.00 0.00 2.52
3061 3339 1.764180 TTCGTGCGTCCGTGGTTTTC 61.764 55.000 0.00 0.00 0.00 2.29
3062 3340 1.768112 CTTCGTGCGTCCGTGGTTTT 61.768 55.000 0.00 0.00 0.00 2.43
3063 3341 2.202905 TTCGTGCGTCCGTGGTTT 60.203 55.556 0.00 0.00 0.00 3.27
3064 3342 2.660552 CTTCGTGCGTCCGTGGTT 60.661 61.111 0.00 0.00 0.00 3.67
3065 3343 4.657824 CCTTCGTGCGTCCGTGGT 62.658 66.667 0.00 0.00 0.00 4.16
3070 3348 2.240612 GATTGTGCCTTCGTGCGTCC 62.241 60.000 0.00 0.00 0.00 4.79
3071 3349 1.132640 GATTGTGCCTTCGTGCGTC 59.867 57.895 0.00 0.00 0.00 5.19
3072 3350 1.596752 TGATTGTGCCTTCGTGCGT 60.597 52.632 0.00 0.00 0.00 5.24
3073 3351 1.154413 GTGATTGTGCCTTCGTGCG 60.154 57.895 0.00 0.00 0.00 5.34
3074 3352 1.438651 TAGTGATTGTGCCTTCGTGC 58.561 50.000 0.00 0.00 0.00 5.34
3075 3353 3.261580 TCATAGTGATTGTGCCTTCGTG 58.738 45.455 0.00 0.00 0.00 4.35
3076 3354 3.610040 TCATAGTGATTGTGCCTTCGT 57.390 42.857 0.00 0.00 0.00 3.85
3077 3355 3.249320 CCATCATAGTGATTGTGCCTTCG 59.751 47.826 0.00 0.00 34.28 3.79
3078 3356 4.454678 TCCATCATAGTGATTGTGCCTTC 58.545 43.478 0.00 0.00 34.28 3.46
3079 3357 4.458397 CTCCATCATAGTGATTGTGCCTT 58.542 43.478 0.00 0.00 34.28 4.35
3080 3358 3.181447 CCTCCATCATAGTGATTGTGCCT 60.181 47.826 0.00 0.00 34.28 4.75
3081 3359 3.144506 CCTCCATCATAGTGATTGTGCC 58.855 50.000 0.00 0.00 34.28 5.01
3082 3360 4.063689 CTCCTCCATCATAGTGATTGTGC 58.936 47.826 0.00 0.00 34.28 4.57
3083 3361 5.287674 ACTCCTCCATCATAGTGATTGTG 57.712 43.478 0.00 0.00 34.28 3.33
3084 3362 7.623999 AATACTCCTCCATCATAGTGATTGT 57.376 36.000 0.00 0.00 34.28 2.71
3085 3363 8.588472 TGTAATACTCCTCCATCATAGTGATTG 58.412 37.037 0.00 0.00 34.28 2.67
3086 3364 8.727100 TGTAATACTCCTCCATCATAGTGATT 57.273 34.615 0.00 0.00 34.28 2.57
3087 3365 8.727100 TTGTAATACTCCTCCATCATAGTGAT 57.273 34.615 0.00 0.00 37.65 3.06
3088 3366 7.255977 GCTTGTAATACTCCTCCATCATAGTGA 60.256 40.741 0.00 0.00 0.00 3.41
3089 3367 6.870965 GCTTGTAATACTCCTCCATCATAGTG 59.129 42.308 0.00 0.00 0.00 2.74
3090 3368 6.554982 TGCTTGTAATACTCCTCCATCATAGT 59.445 38.462 0.00 0.00 0.00 2.12
3091 3369 6.870965 GTGCTTGTAATACTCCTCCATCATAG 59.129 42.308 0.00 0.00 0.00 2.23
3092 3370 6.516693 CGTGCTTGTAATACTCCTCCATCATA 60.517 42.308 0.00 0.00 0.00 2.15
3093 3371 5.615289 GTGCTTGTAATACTCCTCCATCAT 58.385 41.667 0.00 0.00 0.00 2.45
3094 3372 4.441495 CGTGCTTGTAATACTCCTCCATCA 60.441 45.833 0.00 0.00 0.00 3.07
3095 3373 4.051922 CGTGCTTGTAATACTCCTCCATC 58.948 47.826 0.00 0.00 0.00 3.51
3096 3374 3.704566 TCGTGCTTGTAATACTCCTCCAT 59.295 43.478 0.00 0.00 0.00 3.41
3097 3375 3.093814 TCGTGCTTGTAATACTCCTCCA 58.906 45.455 0.00 0.00 0.00 3.86
3098 3376 3.380637 TCTCGTGCTTGTAATACTCCTCC 59.619 47.826 0.00 0.00 0.00 4.30
3099 3377 4.352887 GTCTCGTGCTTGTAATACTCCTC 58.647 47.826 0.00 0.00 0.00 3.71
3100 3378 3.181499 CGTCTCGTGCTTGTAATACTCCT 60.181 47.826 0.00 0.00 0.00 3.69
3101 3379 3.106672 CGTCTCGTGCTTGTAATACTCC 58.893 50.000 0.00 0.00 0.00 3.85
3102 3380 4.012319 TCGTCTCGTGCTTGTAATACTC 57.988 45.455 0.00 0.00 0.00 2.59
3103 3381 3.688185 TCTCGTCTCGTGCTTGTAATACT 59.312 43.478 0.00 0.00 0.00 2.12
3104 3382 4.012319 TCTCGTCTCGTGCTTGTAATAC 57.988 45.455 0.00 0.00 0.00 1.89
3105 3383 3.937079 TCTCTCGTCTCGTGCTTGTAATA 59.063 43.478 0.00 0.00 0.00 0.98
3106 3384 2.747989 TCTCTCGTCTCGTGCTTGTAAT 59.252 45.455 0.00 0.00 0.00 1.89
3107 3385 2.095869 GTCTCTCGTCTCGTGCTTGTAA 60.096 50.000 0.00 0.00 0.00 2.41
3108 3386 1.463831 GTCTCTCGTCTCGTGCTTGTA 59.536 52.381 0.00 0.00 0.00 2.41
3109 3387 0.238817 GTCTCTCGTCTCGTGCTTGT 59.761 55.000 0.00 0.00 0.00 3.16
3110 3388 0.455295 GGTCTCTCGTCTCGTGCTTG 60.455 60.000 0.00 0.00 0.00 4.01
3111 3389 1.877367 GGTCTCTCGTCTCGTGCTT 59.123 57.895 0.00 0.00 0.00 3.91
3112 3390 2.392181 CGGTCTCTCGTCTCGTGCT 61.392 63.158 0.00 0.00 0.00 4.40
3113 3391 2.098680 CGGTCTCTCGTCTCGTGC 59.901 66.667 0.00 0.00 0.00 5.34
3114 3392 3.563842 ACGGTCTCTCGTCTCGTG 58.436 61.111 0.00 0.00 39.34 4.35
3120 3398 0.956410 CACCTCAGACGGTCTCTCGT 60.956 60.000 7.89 1.28 46.83 4.18
3121 3399 1.797441 CACCTCAGACGGTCTCTCG 59.203 63.158 7.89 0.00 34.29 4.04
3122 3400 1.509004 GCACCTCAGACGGTCTCTC 59.491 63.158 7.89 0.00 34.29 3.20
3123 3401 2.336478 CGCACCTCAGACGGTCTCT 61.336 63.158 7.89 0.00 34.29 3.10
3124 3402 2.179517 CGCACCTCAGACGGTCTC 59.820 66.667 7.89 0.00 34.29 3.36
3125 3403 2.282251 TCGCACCTCAGACGGTCT 60.282 61.111 4.45 4.45 34.29 3.85
3126 3404 1.303799 TAGTCGCACCTCAGACGGTC 61.304 60.000 0.00 0.00 41.86 4.79
3127 3405 1.303074 TAGTCGCACCTCAGACGGT 60.303 57.895 0.00 0.00 41.86 4.83
3128 3406 1.136984 GTAGTCGCACCTCAGACGG 59.863 63.158 0.00 0.00 41.86 4.79
3129 3407 0.452184 ATGTAGTCGCACCTCAGACG 59.548 55.000 0.00 0.00 41.86 4.18
3130 3408 1.469940 CCATGTAGTCGCACCTCAGAC 60.470 57.143 0.00 0.00 37.63 3.51
3131 3409 0.817654 CCATGTAGTCGCACCTCAGA 59.182 55.000 0.00 0.00 0.00 3.27
3132 3410 0.179100 CCCATGTAGTCGCACCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
3133 3411 1.613317 CCCCATGTAGTCGCACCTCA 61.613 60.000 0.00 0.00 0.00 3.86
3134 3412 1.144057 CCCCATGTAGTCGCACCTC 59.856 63.158 0.00 0.00 0.00 3.85
3135 3413 0.324923 TACCCCATGTAGTCGCACCT 60.325 55.000 0.00 0.00 0.00 4.00
3136 3414 0.756903 ATACCCCATGTAGTCGCACC 59.243 55.000 0.00 0.00 31.61 5.01
3137 3415 3.955650 ATATACCCCATGTAGTCGCAC 57.044 47.619 0.00 0.00 31.61 5.34
3138 3416 5.265989 TCATATATACCCCATGTAGTCGCA 58.734 41.667 0.00 0.00 31.61 5.10
3139 3417 5.221263 CCTCATATATACCCCATGTAGTCGC 60.221 48.000 0.00 0.00 31.61 5.19
3140 3418 5.302059 CCCTCATATATACCCCATGTAGTCG 59.698 48.000 0.00 0.00 31.61 4.18
3141 3419 5.070580 GCCCTCATATATACCCCATGTAGTC 59.929 48.000 0.00 0.00 31.61 2.59
3142 3420 4.969359 GCCCTCATATATACCCCATGTAGT 59.031 45.833 0.00 0.00 31.61 2.73
3143 3421 4.968719 TGCCCTCATATATACCCCATGTAG 59.031 45.833 0.00 0.00 31.61 2.74
3144 3422 4.966611 TGCCCTCATATATACCCCATGTA 58.033 43.478 0.00 0.00 0.00 2.29
3145 3423 3.814284 TGCCCTCATATATACCCCATGT 58.186 45.455 0.00 0.00 0.00 3.21
3146 3424 4.860802 TTGCCCTCATATATACCCCATG 57.139 45.455 0.00 0.00 0.00 3.66
3147 3425 5.976244 TGTATTGCCCTCATATATACCCCAT 59.024 40.000 0.00 0.00 0.00 4.00
3148 3426 5.354848 TGTATTGCCCTCATATATACCCCA 58.645 41.667 0.00 0.00 0.00 4.96
3149 3427 5.968676 TGTATTGCCCTCATATATACCCC 57.031 43.478 0.00 0.00 0.00 4.95
3150 3428 7.071196 TCTCATGTATTGCCCTCATATATACCC 59.929 40.741 0.00 0.00 0.00 3.69
3151 3429 8.023021 TCTCATGTATTGCCCTCATATATACC 57.977 38.462 0.00 0.00 0.00 2.73
3152 3430 8.700051 ACTCTCATGTATTGCCCTCATATATAC 58.300 37.037 0.00 0.00 0.00 1.47
3153 3431 8.844865 ACTCTCATGTATTGCCCTCATATATA 57.155 34.615 0.00 0.00 0.00 0.86
3154 3432 7.147585 GGACTCTCATGTATTGCCCTCATATAT 60.148 40.741 0.00 0.00 0.00 0.86
3155 3433 6.155221 GGACTCTCATGTATTGCCCTCATATA 59.845 42.308 0.00 0.00 0.00 0.86
3156 3434 5.046014 GGACTCTCATGTATTGCCCTCATAT 60.046 44.000 0.00 0.00 0.00 1.78
3157 3435 4.284490 GGACTCTCATGTATTGCCCTCATA 59.716 45.833 0.00 0.00 0.00 2.15
3158 3436 3.072184 GGACTCTCATGTATTGCCCTCAT 59.928 47.826 0.00 0.00 0.00 2.90
3159 3437 2.435805 GGACTCTCATGTATTGCCCTCA 59.564 50.000 0.00 0.00 0.00 3.86
3160 3438 2.703007 AGGACTCTCATGTATTGCCCTC 59.297 50.000 0.00 0.00 0.00 4.30
3161 3439 2.769209 AGGACTCTCATGTATTGCCCT 58.231 47.619 0.00 0.00 0.00 5.19
3162 3440 3.209410 CAAGGACTCTCATGTATTGCCC 58.791 50.000 0.00 0.00 0.00 5.36
3163 3441 3.118261 TCCAAGGACTCTCATGTATTGCC 60.118 47.826 0.00 0.00 0.00 4.52
3164 3442 4.125703 CTCCAAGGACTCTCATGTATTGC 58.874 47.826 0.00 0.00 0.00 3.56
3165 3443 4.406972 TCCTCCAAGGACTCTCATGTATTG 59.593 45.833 0.00 0.00 40.06 1.90
3166 3444 4.624913 TCCTCCAAGGACTCTCATGTATT 58.375 43.478 0.00 0.00 40.06 1.89
3167 3445 4.271807 TCCTCCAAGGACTCTCATGTAT 57.728 45.455 0.00 0.00 40.06 2.29
3168 3446 3.757947 TCCTCCAAGGACTCTCATGTA 57.242 47.619 0.00 0.00 40.06 2.29
3169 3447 2.630889 TCCTCCAAGGACTCTCATGT 57.369 50.000 0.00 0.00 40.06 3.21
3181 3459 4.124238 CAACTCGTTTACTTGTCCTCCAA 58.876 43.478 0.00 0.00 0.00 3.53
3182 3460 3.133362 ACAACTCGTTTACTTGTCCTCCA 59.867 43.478 0.00 0.00 0.00 3.86
3183 3461 3.725490 ACAACTCGTTTACTTGTCCTCC 58.275 45.455 0.00 0.00 0.00 4.30
3184 3462 5.527033 AGTACAACTCGTTTACTTGTCCTC 58.473 41.667 0.00 0.00 30.76 3.71
3185 3463 5.526506 AGTACAACTCGTTTACTTGTCCT 57.473 39.130 0.00 0.00 30.76 3.85
3186 3464 5.819270 GAGTACAACTCGTTTACTTGTCC 57.181 43.478 0.00 0.00 35.28 4.02
3198 3476 1.518286 GACGCGTACGAGTACAACTC 58.482 55.000 24.55 7.54 43.93 3.01
3199 3477 0.179240 CGACGCGTACGAGTACAACT 60.179 55.000 24.55 0.42 43.93 3.16
3200 3478 1.122419 CCGACGCGTACGAGTACAAC 61.122 60.000 24.55 11.19 43.93 3.32
3201 3479 1.132436 CCGACGCGTACGAGTACAA 59.868 57.895 24.55 0.00 43.93 2.41
3202 3480 0.734597 TACCGACGCGTACGAGTACA 60.735 55.000 24.55 7.41 43.93 2.90
3203 3481 0.314339 GTACCGACGCGTACGAGTAC 60.314 60.000 24.55 25.58 43.93 2.73
3204 3482 1.418342 GGTACCGACGCGTACGAGTA 61.418 60.000 24.55 21.29 43.93 2.59
3205 3483 2.740714 GGTACCGACGCGTACGAGT 61.741 63.158 24.75 24.75 43.93 4.18
3206 3484 2.021931 GGTACCGACGCGTACGAG 59.978 66.667 25.30 19.58 43.93 4.18
3207 3485 2.321333 TTGGTACCGACGCGTACGA 61.321 57.895 25.30 10.88 43.93 3.43
3209 3487 2.145905 CGTTGGTACCGACGCGTAC 61.146 63.158 35.36 6.52 45.15 3.67
3210 3488 2.175566 CGTTGGTACCGACGCGTA 59.824 61.111 35.36 1.36 45.15 4.42
3215 3493 1.864176 CCTTTGCGTTGGTACCGAC 59.136 57.895 20.98 20.98 0.00 4.79
3216 3494 1.962306 GCCTTTGCGTTGGTACCGA 60.962 57.895 7.57 1.50 0.00 4.69
3217 3495 2.559330 GCCTTTGCGTTGGTACCG 59.441 61.111 7.57 0.00 0.00 4.02
3218 3496 2.959372 GGCCTTTGCGTTGGTACC 59.041 61.111 4.43 4.43 38.85 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.