Multiple sequence alignment - TraesCS3B01G425100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G425100 chr3B 100.000 3509 0 0 1 3509 663036760 663040268 0.000000e+00 6481.0
1 TraesCS3B01G425100 chr3B 92.303 1624 102 16 871 2486 663086702 663085094 0.000000e+00 2285.0
2 TraesCS3B01G425100 chr3B 92.000 50 4 0 3436 3485 396272030 396271981 1.750000e-08 71.3
3 TraesCS3B01G425100 chr3D 94.144 2459 104 17 95 2536 501479638 501477203 0.000000e+00 3707.0
4 TraesCS3B01G425100 chr3D 92.204 2078 107 23 428 2486 501513558 501511517 0.000000e+00 2889.0
5 TraesCS3B01G425100 chr3D 91.682 1623 112 15 871 2486 501790849 501789243 0.000000e+00 2228.0
6 TraesCS3B01G425100 chr3D 89.818 550 37 6 2953 3489 501476954 501476411 0.000000e+00 688.0
7 TraesCS3B01G425100 chr3D 91.156 441 29 4 1 432 501528192 501527753 1.080000e-164 590.0
8 TraesCS3B01G425100 chr3D 98.000 50 1 0 1 50 501479693 501479644 1.740000e-13 87.9
9 TraesCS3B01G425100 chr3D 92.000 50 4 0 3436 3485 322435443 322435394 1.750000e-08 71.3
10 TraesCS3B01G425100 chr3A 91.439 1647 114 16 871 2506 641172478 641170848 0.000000e+00 2235.0
11 TraesCS3B01G425100 chr3A 90.582 1614 105 20 922 2533 641638844 641640412 0.000000e+00 2095.0
12 TraesCS3B01G425100 chr3A 91.390 662 40 9 2859 3507 641170796 641170139 0.000000e+00 891.0
13 TraesCS3B01G425100 chr3A 91.667 48 4 0 3436 3483 466791009 466791056 2.260000e-07 67.6
14 TraesCS3B01G425100 chr6D 82.450 1453 247 7 1024 2475 5942424 5940979 0.000000e+00 1264.0
15 TraesCS3B01G425100 chr7D 82.041 1470 241 17 1025 2481 40033365 40031906 0.000000e+00 1230.0
16 TraesCS3B01G425100 chr7D 91.667 48 4 0 3438 3485 376090374 376090421 2.260000e-07 67.6
17 TraesCS3B01G425100 chr6B 81.293 1454 262 8 1024 2475 11246689 11245244 0.000000e+00 1170.0
18 TraesCS3B01G425100 chr4A 87.156 327 37 4 2537 2859 702009876 702010201 1.990000e-97 366.0
19 TraesCS3B01G425100 chr1D 87.077 325 38 3 2541 2863 481307714 481308036 7.160000e-97 364.0
20 TraesCS3B01G425100 chr7A 86.154 325 43 1 2539 2861 690433977 690434301 2.000000e-92 350.0
21 TraesCS3B01G425100 chr7A 84.524 336 39 12 2535 2865 729948561 729948234 1.570000e-83 320.0
22 TraesCS3B01G425100 chr4D 84.985 333 45 4 2535 2863 502379973 502380304 2.020000e-87 333.0
23 TraesCS3B01G425100 chr4D 92.000 50 4 0 3436 3485 170225903 170225952 1.750000e-08 71.3
24 TraesCS3B01G425100 chrUn 85.139 323 43 4 2541 2859 43586644 43586965 3.380000e-85 326.0
25 TraesCS3B01G425100 chr5D 84.953 319 46 1 2543 2859 391744620 391744938 4.370000e-84 322.0
26 TraesCS3B01G425100 chr5D 83.333 324 44 8 2542 2859 480753794 480753475 1.230000e-74 291.0
27 TraesCS3B01G425100 chr5D 96.000 50 2 0 3436 3485 93064625 93064576 8.070000e-12 82.4
28 TraesCS3B01G425100 chr5A 82.407 324 54 3 2542 2862 575900104 575899781 2.670000e-71 279.0
29 TraesCS3B01G425100 chr5A 91.228 57 4 1 3430 3485 86662177 86662121 3.760000e-10 76.8
30 TraesCS3B01G425100 chr2A 85.938 64 5 4 3436 3498 15032924 15032864 8.130000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G425100 chr3B 663036760 663040268 3508 False 6481.0 6481 100.000000 1 3509 1 chr3B.!!$F1 3508
1 TraesCS3B01G425100 chr3B 663085094 663086702 1608 True 2285.0 2285 92.303000 871 2486 1 chr3B.!!$R2 1615
2 TraesCS3B01G425100 chr3D 501511517 501513558 2041 True 2889.0 2889 92.204000 428 2486 1 chr3D.!!$R2 2058
3 TraesCS3B01G425100 chr3D 501789243 501790849 1606 True 2228.0 2228 91.682000 871 2486 1 chr3D.!!$R4 1615
4 TraesCS3B01G425100 chr3D 501476411 501479693 3282 True 1494.3 3707 93.987333 1 3489 3 chr3D.!!$R5 3488
5 TraesCS3B01G425100 chr3A 641638844 641640412 1568 False 2095.0 2095 90.582000 922 2533 1 chr3A.!!$F2 1611
6 TraesCS3B01G425100 chr3A 641170139 641172478 2339 True 1563.0 2235 91.414500 871 3507 2 chr3A.!!$R1 2636
7 TraesCS3B01G425100 chr6D 5940979 5942424 1445 True 1264.0 1264 82.450000 1024 2475 1 chr6D.!!$R1 1451
8 TraesCS3B01G425100 chr7D 40031906 40033365 1459 True 1230.0 1230 82.041000 1025 2481 1 chr7D.!!$R1 1456
9 TraesCS3B01G425100 chr6B 11245244 11246689 1445 True 1170.0 1170 81.293000 1024 2475 1 chr6B.!!$R1 1451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.108615 CTGGCACGGGACTTACTCAG 60.109 60.0 0.00 0.00 0.00 3.35 F
89 90 0.164647 CAGGCGAGCAGAAAAGAACG 59.835 55.0 0.00 0.00 0.00 3.95 F
153 154 0.521450 CGTCCATAGGATCGCGATCG 60.521 60.0 35.36 24.09 38.69 3.69 F
962 1030 0.859232 CCGTTTCCTTCTCACGTGTG 59.141 55.0 16.51 13.78 31.83 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2080 1.053424 TACTCTGGGTTGGTGGACAC 58.947 55.000 0.00 0.00 0.00 3.67 R
2233 2320 3.745803 GGAGAACCTCGTCGGCGT 61.746 66.667 10.18 0.00 39.49 5.68 R
2431 2524 1.374758 GCTCCCACGTGTCTTGGAG 60.375 63.158 25.62 25.62 45.83 3.86 R
2699 2828 0.028505 ATTGTGAAGCGCGCATGATC 59.971 50.000 35.10 23.99 36.78 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.825151 AGAAGAAACTATCCTTAAGCCATGC 59.175 40.000 0.00 0.00 0.00 4.06
64 65 3.890674 GTGATTCTGGCACGGGAC 58.109 61.111 0.00 0.00 33.92 4.46
65 66 1.296715 GTGATTCTGGCACGGGACT 59.703 57.895 0.00 0.00 33.92 3.85
66 67 0.321653 GTGATTCTGGCACGGGACTT 60.322 55.000 0.00 0.00 33.92 3.01
67 68 1.066430 GTGATTCTGGCACGGGACTTA 60.066 52.381 0.00 0.00 33.92 2.24
68 69 1.066430 TGATTCTGGCACGGGACTTAC 60.066 52.381 0.00 0.00 33.92 2.34
69 70 1.207329 GATTCTGGCACGGGACTTACT 59.793 52.381 0.00 0.00 33.92 2.24
70 71 0.606604 TTCTGGCACGGGACTTACTC 59.393 55.000 0.00 0.00 33.92 2.59
71 72 0.541063 TCTGGCACGGGACTTACTCA 60.541 55.000 0.00 0.00 33.92 3.41
72 73 0.108615 CTGGCACGGGACTTACTCAG 60.109 60.000 0.00 0.00 0.00 3.35
73 74 1.218316 GGCACGGGACTTACTCAGG 59.782 63.158 0.00 0.00 0.00 3.86
74 75 1.448013 GCACGGGACTTACTCAGGC 60.448 63.158 0.00 0.00 0.00 4.85
75 76 1.153823 CACGGGACTTACTCAGGCG 60.154 63.158 0.00 0.00 0.00 5.52
76 77 1.303888 ACGGGACTTACTCAGGCGA 60.304 57.895 0.00 0.00 0.00 5.54
77 78 1.313812 ACGGGACTTACTCAGGCGAG 61.314 60.000 5.08 5.08 45.49 5.03
78 79 1.142097 GGGACTTACTCAGGCGAGC 59.858 63.158 6.32 0.00 43.66 5.03
79 80 1.605058 GGGACTTACTCAGGCGAGCA 61.605 60.000 6.32 0.00 43.66 4.26
80 81 0.179124 GGACTTACTCAGGCGAGCAG 60.179 60.000 6.32 5.74 43.66 4.24
81 82 0.811915 GACTTACTCAGGCGAGCAGA 59.188 55.000 6.32 0.00 43.66 4.26
82 83 1.202582 GACTTACTCAGGCGAGCAGAA 59.797 52.381 6.32 0.00 43.66 3.02
83 84 1.618837 ACTTACTCAGGCGAGCAGAAA 59.381 47.619 6.32 0.00 43.66 2.52
84 85 2.037251 ACTTACTCAGGCGAGCAGAAAA 59.963 45.455 6.32 0.00 43.66 2.29
85 86 2.370281 TACTCAGGCGAGCAGAAAAG 57.630 50.000 6.32 0.00 43.66 2.27
86 87 0.681733 ACTCAGGCGAGCAGAAAAGA 59.318 50.000 6.32 0.00 43.66 2.52
87 88 1.070758 ACTCAGGCGAGCAGAAAAGAA 59.929 47.619 6.32 0.00 43.66 2.52
88 89 1.462670 CTCAGGCGAGCAGAAAAGAAC 59.537 52.381 0.00 0.00 31.00 3.01
89 90 0.164647 CAGGCGAGCAGAAAAGAACG 59.835 55.000 0.00 0.00 0.00 3.95
90 91 0.951040 AGGCGAGCAGAAAAGAACGG 60.951 55.000 0.00 0.00 0.00 4.44
91 92 1.497722 GCGAGCAGAAAAGAACGGG 59.502 57.895 0.00 0.00 0.00 5.28
92 93 1.497722 CGAGCAGAAAAGAACGGGC 59.502 57.895 0.00 0.00 0.00 6.13
93 94 1.497722 GAGCAGAAAAGAACGGGCG 59.502 57.895 0.00 0.00 0.00 6.13
99 100 1.804748 AGAAAAGAACGGGCGTGATTC 59.195 47.619 0.00 0.00 0.00 2.52
107 108 4.395080 GGCGTGATTCGACGATCA 57.605 55.556 0.00 2.14 42.10 2.92
153 154 0.521450 CGTCCATAGGATCGCGATCG 60.521 60.000 35.36 24.09 38.69 3.69
335 342 9.204337 TGAACTTATTATGCCCAACTACTACTA 57.796 33.333 0.00 0.00 0.00 1.82
436 445 6.035843 CACAAAAACATGTCTATATGCACCC 58.964 40.000 0.00 0.00 0.00 4.61
554 574 9.736414 ATCCGATCAAATCAATCAAGAATATCT 57.264 29.630 0.00 0.00 0.00 1.98
577 597 4.638421 TCATGGTGATAAATCCGTCCAAAC 59.362 41.667 0.00 0.00 0.00 2.93
581 601 4.461431 GGTGATAAATCCGTCCAAACCTTT 59.539 41.667 0.00 0.00 0.00 3.11
596 630 9.191995 GTCCAAACCTTTTTGTATCATAGTTTG 57.808 33.333 0.00 0.00 40.61 2.93
597 631 8.919145 TCCAAACCTTTTTGTATCATAGTTTGT 58.081 29.630 10.35 0.00 40.61 2.83
601 635 8.927675 ACCTTTTTGTATCATAGTTTGTACCA 57.072 30.769 0.00 0.00 0.00 3.25
602 636 9.528489 ACCTTTTTGTATCATAGTTTGTACCAT 57.472 29.630 0.00 0.00 0.00 3.55
631 665 1.564818 TGTTGGTGTTTGGAGTGGGTA 59.435 47.619 0.00 0.00 0.00 3.69
679 743 6.159988 AGTGCTCAGTCTTCTTGTACATAAC 58.840 40.000 0.00 0.00 0.00 1.89
692 756 8.677148 TCTTGTACATAACTTTGCTTCTCTTT 57.323 30.769 0.00 0.00 0.00 2.52
693 757 9.772973 TCTTGTACATAACTTTGCTTCTCTTTA 57.227 29.630 0.00 0.00 0.00 1.85
694 758 9.813080 CTTGTACATAACTTTGCTTCTCTTTAC 57.187 33.333 0.00 0.00 0.00 2.01
695 759 8.319143 TGTACATAACTTTGCTTCTCTTTACC 57.681 34.615 0.00 0.00 0.00 2.85
696 760 6.819397 ACATAACTTTGCTTCTCTTTACCC 57.181 37.500 0.00 0.00 0.00 3.69
697 761 6.543735 ACATAACTTTGCTTCTCTTTACCCT 58.456 36.000 0.00 0.00 0.00 4.34
698 762 7.686434 ACATAACTTTGCTTCTCTTTACCCTA 58.314 34.615 0.00 0.00 0.00 3.53
699 763 8.161425 ACATAACTTTGCTTCTCTTTACCCTAA 58.839 33.333 0.00 0.00 0.00 2.69
700 764 9.010029 CATAACTTTGCTTCTCTTTACCCTAAA 57.990 33.333 0.00 0.00 0.00 1.85
701 765 7.891498 AACTTTGCTTCTCTTTACCCTAAAA 57.109 32.000 0.00 0.00 0.00 1.52
702 766 7.891498 ACTTTGCTTCTCTTTACCCTAAAAA 57.109 32.000 0.00 0.00 0.00 1.94
735 799 7.545965 TGCTTCTCTTCTACTATAAAACTGTGC 59.454 37.037 0.00 0.00 0.00 4.57
740 804 6.971184 TCTTCTACTATAAAACTGTGCTACGC 59.029 38.462 0.00 0.00 0.00 4.42
742 806 4.196626 ACTATAAAACTGTGCTACGCCA 57.803 40.909 0.00 0.00 0.00 5.69
744 808 5.183228 ACTATAAAACTGTGCTACGCCATT 58.817 37.500 0.00 0.00 0.00 3.16
745 809 6.342906 ACTATAAAACTGTGCTACGCCATTA 58.657 36.000 0.00 0.00 0.00 1.90
797 861 7.202093 CCAGATGGGTTTACTAATAGGATGACA 60.202 40.741 0.00 0.00 0.00 3.58
900 964 2.782192 GCACGATACGCACACTAGTAAG 59.218 50.000 0.00 0.00 0.00 2.34
962 1030 0.859232 CCGTTTCCTTCTCACGTGTG 59.141 55.000 16.51 13.78 31.83 3.82
1008 1082 4.468696 CGCAGATACTACCATGGCGACA 62.469 54.545 13.04 0.00 45.19 4.35
1159 1233 3.379445 CTGGGTGCCTCCGTACGT 61.379 66.667 15.21 0.00 37.00 3.57
1444 1521 1.303317 GGCCGCTTCCTTTTCTCCA 60.303 57.895 0.00 0.00 0.00 3.86
1559 1639 3.984193 AAGGCATCGTGAGGCTGGC 62.984 63.158 6.46 0.00 42.14 4.85
2124 2211 1.246056 CCATGAAGCTGTGGGTGGTG 61.246 60.000 0.00 0.00 0.00 4.17
2233 2320 2.658422 GGCGGTTCGAGGTGGTAA 59.342 61.111 0.00 0.00 0.00 2.85
2466 2559 2.960688 GCTTGTCCGGGAGAAGGCT 61.961 63.158 28.85 0.00 0.00 4.58
2476 2569 0.539518 GGAGAAGGCTGAGGAAGTCC 59.460 60.000 0.00 0.00 0.00 3.85
2538 2667 4.732784 ACGTGCGCTGAAATAAAATTCAT 58.267 34.783 9.73 0.00 38.55 2.57
2539 2668 5.160641 ACGTGCGCTGAAATAAAATTCATT 58.839 33.333 9.73 0.00 38.55 2.57
2540 2669 6.318628 ACGTGCGCTGAAATAAAATTCATTA 58.681 32.000 9.73 0.00 38.55 1.90
2541 2670 6.468956 ACGTGCGCTGAAATAAAATTCATTAG 59.531 34.615 9.73 0.00 38.55 1.73
2542 2671 6.686679 CGTGCGCTGAAATAAAATTCATTAGA 59.313 34.615 9.73 0.00 38.55 2.10
2543 2672 7.097289 CGTGCGCTGAAATAAAATTCATTAGAG 60.097 37.037 9.73 0.00 38.55 2.43
2544 2673 6.692681 TGCGCTGAAATAAAATTCATTAGAGC 59.307 34.615 9.73 0.00 38.55 4.09
2545 2674 6.692681 GCGCTGAAATAAAATTCATTAGAGCA 59.307 34.615 0.00 0.00 38.55 4.26
2546 2675 7.380602 GCGCTGAAATAAAATTCATTAGAGCAT 59.619 33.333 0.00 0.00 38.55 3.79
2547 2676 8.899776 CGCTGAAATAAAATTCATTAGAGCATC 58.100 33.333 0.00 0.00 38.55 3.91
2548 2677 9.962783 GCTGAAATAAAATTCATTAGAGCATCT 57.037 29.630 0.00 0.00 42.99 2.90
2558 2687 3.490890 GAGCATCTCCAACACGCC 58.509 61.111 0.00 0.00 0.00 5.68
2559 2688 2.045926 AGCATCTCCAACACGCCC 60.046 61.111 0.00 0.00 0.00 6.13
2560 2689 2.359850 GCATCTCCAACACGCCCA 60.360 61.111 0.00 0.00 0.00 5.36
2561 2690 1.971167 GCATCTCCAACACGCCCAA 60.971 57.895 0.00 0.00 0.00 4.12
2562 2691 1.523154 GCATCTCCAACACGCCCAAA 61.523 55.000 0.00 0.00 0.00 3.28
2563 2692 0.240945 CATCTCCAACACGCCCAAAC 59.759 55.000 0.00 0.00 0.00 2.93
2564 2693 0.179004 ATCTCCAACACGCCCAAACA 60.179 50.000 0.00 0.00 0.00 2.83
2565 2694 1.098712 TCTCCAACACGCCCAAACAC 61.099 55.000 0.00 0.00 0.00 3.32
2566 2695 1.077357 TCCAACACGCCCAAACACT 60.077 52.632 0.00 0.00 0.00 3.55
2567 2696 1.065600 CCAACACGCCCAAACACTG 59.934 57.895 0.00 0.00 0.00 3.66
2568 2697 1.065600 CAACACGCCCAAACACTGG 59.934 57.895 0.00 0.00 45.97 4.00
2575 2704 3.977244 CCAAACACTGGGCCGCAC 61.977 66.667 0.00 0.00 42.17 5.34
2576 2705 4.326766 CAAACACTGGGCCGCACG 62.327 66.667 0.00 0.00 0.00 5.34
2581 2710 4.323477 ACTGGGCCGCACGCTAAA 62.323 61.111 0.00 0.00 37.74 1.85
2582 2711 3.053291 CTGGGCCGCACGCTAAAA 61.053 61.111 0.00 0.00 37.74 1.52
2583 2712 2.360600 TGGGCCGCACGCTAAAAT 60.361 55.556 0.00 0.00 37.74 1.82
2584 2713 2.322999 CTGGGCCGCACGCTAAAATC 62.323 60.000 0.00 0.00 37.74 2.17
2585 2714 2.407616 GGCCGCACGCTAAAATCC 59.592 61.111 0.00 0.00 37.74 3.01
2586 2715 2.022762 GCCGCACGCTAAAATCCG 59.977 61.111 0.00 0.00 0.00 4.18
2587 2716 2.707039 CCGCACGCTAAAATCCGG 59.293 61.111 0.00 0.00 0.00 5.14
2588 2717 2.707039 CGCACGCTAAAATCCGGG 59.293 61.111 0.00 0.00 0.00 5.73
2589 2718 2.104253 CGCACGCTAAAATCCGGGT 61.104 57.895 0.00 0.00 0.00 5.28
2590 2719 1.641123 CGCACGCTAAAATCCGGGTT 61.641 55.000 0.00 0.00 0.00 4.11
2591 2720 0.524414 GCACGCTAAAATCCGGGTTT 59.476 50.000 6.94 6.94 0.00 3.27
2592 2721 1.068125 GCACGCTAAAATCCGGGTTTT 60.068 47.619 27.53 27.53 35.60 2.43
2593 2722 2.608506 GCACGCTAAAATCCGGGTTTTT 60.609 45.455 29.34 22.04 33.62 1.94
2611 2740 2.450609 TTTAGACGCCAGACAGTTCC 57.549 50.000 0.00 0.00 0.00 3.62
2612 2741 1.334160 TTAGACGCCAGACAGTTCCA 58.666 50.000 0.00 0.00 0.00 3.53
2613 2742 0.888619 TAGACGCCAGACAGTTCCAG 59.111 55.000 0.00 0.00 0.00 3.86
2614 2743 2.029844 GACGCCAGACAGTTCCAGC 61.030 63.158 0.00 0.00 0.00 4.85
2615 2744 2.031012 CGCCAGACAGTTCCAGCA 59.969 61.111 0.00 0.00 0.00 4.41
2616 2745 1.376424 CGCCAGACAGTTCCAGCAT 60.376 57.895 0.00 0.00 0.00 3.79
2617 2746 0.108186 CGCCAGACAGTTCCAGCATA 60.108 55.000 0.00 0.00 0.00 3.14
2618 2747 1.675714 CGCCAGACAGTTCCAGCATAA 60.676 52.381 0.00 0.00 0.00 1.90
2619 2748 2.012673 GCCAGACAGTTCCAGCATAAG 58.987 52.381 0.00 0.00 0.00 1.73
2620 2749 2.012673 CCAGACAGTTCCAGCATAAGC 58.987 52.381 0.00 0.00 42.56 3.09
2638 2767 1.129809 CTGTAAAACAGTCCGCGCG 59.870 57.895 25.67 25.67 41.19 6.86
2639 2768 1.279527 CTGTAAAACAGTCCGCGCGA 61.280 55.000 34.63 15.16 41.19 5.87
2640 2769 0.875040 TGTAAAACAGTCCGCGCGAA 60.875 50.000 34.63 8.78 0.00 4.70
2641 2770 0.232816 GTAAAACAGTCCGCGCGAAA 59.767 50.000 34.63 16.85 0.00 3.46
2642 2771 0.935898 TAAAACAGTCCGCGCGAAAA 59.064 45.000 34.63 13.87 0.00 2.29
2643 2772 0.099082 AAAACAGTCCGCGCGAAAAA 59.901 45.000 34.63 10.96 0.00 1.94
2660 2789 1.176838 AAAATAAATTCGACGCGCGC 58.823 45.000 32.58 23.91 40.61 6.86
2661 2790 0.372334 AAATAAATTCGACGCGCGCT 59.628 45.000 32.58 17.75 40.61 5.92
2662 2791 0.315059 AATAAATTCGACGCGCGCTG 60.315 50.000 32.58 22.90 40.61 5.18
2663 2792 1.143373 ATAAATTCGACGCGCGCTGA 61.143 50.000 32.58 25.01 40.61 4.26
2664 2793 1.345660 TAAATTCGACGCGCGCTGAA 61.346 50.000 30.68 30.68 40.61 3.02
2665 2794 2.165362 AAATTCGACGCGCGCTGAAA 62.165 50.000 31.69 21.34 40.61 2.69
2666 2795 2.165362 AATTCGACGCGCGCTGAAAA 62.165 50.000 31.69 19.80 40.61 2.29
2667 2796 2.165362 ATTCGACGCGCGCTGAAAAA 62.165 50.000 31.69 18.57 40.61 1.94
2668 2797 3.150485 CGACGCGCGCTGAAAAAC 61.150 61.111 32.58 9.94 0.00 2.43
2669 2798 3.150485 GACGCGCGCTGAAAAACG 61.150 61.111 32.58 13.34 0.00 3.60
2680 2809 5.101137 CGCTGAAAAACGCTATTAAAAGC 57.899 39.130 0.00 0.00 39.21 3.51
2681 2810 4.851558 CGCTGAAAAACGCTATTAAAAGCT 59.148 37.500 0.00 0.00 40.49 3.74
2682 2811 5.219841 CGCTGAAAAACGCTATTAAAAGCTG 60.220 40.000 0.00 0.00 40.49 4.24
2683 2812 5.629435 GCTGAAAAACGCTATTAAAAGCTGT 59.371 36.000 0.00 0.00 40.49 4.40
2684 2813 6.799925 GCTGAAAAACGCTATTAAAAGCTGTA 59.200 34.615 0.00 0.00 40.49 2.74
2685 2814 7.325097 GCTGAAAAACGCTATTAAAAGCTGTAA 59.675 33.333 0.00 0.00 40.49 2.41
2686 2815 9.176181 CTGAAAAACGCTATTAAAAGCTGTAAA 57.824 29.630 0.00 0.00 40.49 2.01
2687 2816 9.685828 TGAAAAACGCTATTAAAAGCTGTAAAT 57.314 25.926 0.00 0.00 40.49 1.40
2691 2820 9.685828 AAACGCTATTAAAAGCTGTAAATTTGA 57.314 25.926 0.00 0.00 40.49 2.69
2692 2821 8.895932 ACGCTATTAAAAGCTGTAAATTTGAG 57.104 30.769 0.00 0.00 40.49 3.02
2693 2822 7.968405 ACGCTATTAAAAGCTGTAAATTTGAGG 59.032 33.333 0.00 0.00 40.49 3.86
2694 2823 7.044052 CGCTATTAAAAGCTGTAAATTTGAGGC 60.044 37.037 0.00 2.23 40.49 4.70
2695 2824 7.044052 GCTATTAAAAGCTGTAAATTTGAGGCG 60.044 37.037 0.00 0.00 39.50 5.52
2696 2825 4.584327 AAAAGCTGTAAATTTGAGGCGT 57.416 36.364 0.00 0.00 0.00 5.68
2697 2826 3.831715 AAGCTGTAAATTTGAGGCGTC 57.168 42.857 0.00 0.00 0.00 5.19
2698 2827 1.732259 AGCTGTAAATTTGAGGCGTCG 59.268 47.619 0.00 0.00 0.00 5.12
2699 2828 1.202031 GCTGTAAATTTGAGGCGTCGG 60.202 52.381 0.00 0.00 0.00 4.79
2700 2829 2.343101 CTGTAAATTTGAGGCGTCGGA 58.657 47.619 0.00 0.00 0.00 4.55
2701 2830 2.936498 CTGTAAATTTGAGGCGTCGGAT 59.064 45.455 0.00 0.00 0.00 4.18
2702 2831 2.933906 TGTAAATTTGAGGCGTCGGATC 59.066 45.455 0.00 0.00 0.00 3.36
2703 2832 2.107950 AAATTTGAGGCGTCGGATCA 57.892 45.000 1.39 0.00 0.00 2.92
2704 2833 2.332063 AATTTGAGGCGTCGGATCAT 57.668 45.000 1.39 0.00 0.00 2.45
2705 2834 1.586422 ATTTGAGGCGTCGGATCATG 58.414 50.000 1.39 0.00 0.00 3.07
2706 2835 1.089481 TTTGAGGCGTCGGATCATGC 61.089 55.000 1.39 0.00 0.00 4.06
2707 2836 3.032609 GAGGCGTCGGATCATGCG 61.033 66.667 0.00 0.00 0.00 4.73
2712 2841 3.264897 GTCGGATCATGCGCGCTT 61.265 61.111 33.29 24.21 0.00 4.68
2713 2842 2.961721 TCGGATCATGCGCGCTTC 60.962 61.111 33.29 21.53 0.00 3.86
2714 2843 3.264159 CGGATCATGCGCGCTTCA 61.264 61.111 33.29 14.05 0.00 3.02
2715 2844 2.325857 GGATCATGCGCGCTTCAC 59.674 61.111 33.29 18.33 0.00 3.18
2716 2845 2.463620 GGATCATGCGCGCTTCACA 61.464 57.895 33.29 12.29 0.00 3.58
2717 2846 1.425031 GATCATGCGCGCTTCACAA 59.575 52.632 33.29 11.41 0.00 3.33
2718 2847 0.028505 GATCATGCGCGCTTCACAAT 59.971 50.000 33.29 13.53 0.00 2.71
2719 2848 0.452987 ATCATGCGCGCTTCACAATT 59.547 45.000 33.29 5.90 0.00 2.32
2720 2849 0.240678 TCATGCGCGCTTCACAATTT 59.759 45.000 33.29 2.56 0.00 1.82
2721 2850 1.466558 TCATGCGCGCTTCACAATTTA 59.533 42.857 33.29 7.91 0.00 1.40
2722 2851 1.578915 CATGCGCGCTTCACAATTTAC 59.421 47.619 33.29 0.00 0.00 2.01
2723 2852 0.588737 TGCGCGCTTCACAATTTACA 59.411 45.000 33.29 3.26 0.00 2.41
2724 2853 0.974836 GCGCGCTTCACAATTTACAC 59.025 50.000 26.67 0.00 0.00 2.90
2725 2854 1.399727 GCGCGCTTCACAATTTACACT 60.400 47.619 26.67 0.00 0.00 3.55
2726 2855 2.233355 CGCGCTTCACAATTTACACTG 58.767 47.619 5.56 0.00 0.00 3.66
2727 2856 1.978782 GCGCTTCACAATTTACACTGC 59.021 47.619 0.00 0.00 0.00 4.40
2728 2857 2.604373 GCGCTTCACAATTTACACTGCA 60.604 45.455 0.00 0.00 0.00 4.41
2729 2858 3.825308 CGCTTCACAATTTACACTGCAT 58.175 40.909 0.00 0.00 0.00 3.96
2730 2859 3.605056 CGCTTCACAATTTACACTGCATG 59.395 43.478 0.00 0.00 0.00 4.06
2731 2860 4.549458 GCTTCACAATTTACACTGCATGT 58.451 39.130 6.93 6.93 46.06 3.21
2732 2861 4.984161 GCTTCACAATTTACACTGCATGTT 59.016 37.500 7.02 0.00 43.19 2.71
2733 2862 5.117592 GCTTCACAATTTACACTGCATGTTC 59.882 40.000 7.02 0.00 43.19 3.18
2734 2863 6.389830 TTCACAATTTACACTGCATGTTCT 57.610 33.333 7.02 0.00 43.19 3.01
2735 2864 6.000891 TCACAATTTACACTGCATGTTCTC 57.999 37.500 7.02 0.00 43.19 2.87
2736 2865 5.764686 TCACAATTTACACTGCATGTTCTCT 59.235 36.000 7.02 0.00 43.19 3.10
2737 2866 6.262944 TCACAATTTACACTGCATGTTCTCTT 59.737 34.615 7.02 0.00 43.19 2.85
2738 2867 6.361481 CACAATTTACACTGCATGTTCTCTTG 59.639 38.462 7.02 8.47 43.19 3.02
2739 2868 6.039717 ACAATTTACACTGCATGTTCTCTTGT 59.960 34.615 7.02 8.91 43.19 3.16
2740 2869 5.422666 TTTACACTGCATGTTCTCTTGTG 57.577 39.130 7.02 1.87 43.19 3.33
2741 2870 1.605710 ACACTGCATGTTCTCTTGTGC 59.394 47.619 0.00 0.00 38.98 4.57
2742 2871 0.870393 ACTGCATGTTCTCTTGTGCG 59.130 50.000 0.00 0.00 40.34 5.34
2743 2872 0.453950 CTGCATGTTCTCTTGTGCGC 60.454 55.000 0.00 0.00 40.34 6.09
2744 2873 1.510623 GCATGTTCTCTTGTGCGCG 60.511 57.895 0.00 0.00 0.00 6.86
2745 2874 1.510623 CATGTTCTCTTGTGCGCGC 60.511 57.895 27.26 27.26 0.00 6.86
2746 2875 3.015293 ATGTTCTCTTGTGCGCGCG 62.015 57.895 28.44 28.44 0.00 6.86
2747 2876 3.702555 GTTCTCTTGTGCGCGCGT 61.703 61.111 32.35 0.00 0.00 6.01
2748 2877 2.964925 TTCTCTTGTGCGCGCGTT 60.965 55.556 32.35 0.00 0.00 4.84
2749 2878 2.530497 TTCTCTTGTGCGCGCGTTT 61.530 52.632 32.35 0.00 0.00 3.60
2750 2879 2.042520 TTCTCTTGTGCGCGCGTTTT 62.043 50.000 32.35 0.00 0.00 2.43
2751 2880 1.654137 CTCTTGTGCGCGCGTTTTT 60.654 52.632 32.35 0.00 0.00 1.94
2752 2881 1.855004 CTCTTGTGCGCGCGTTTTTG 61.855 55.000 32.35 18.43 0.00 2.44
2753 2882 1.936880 CTTGTGCGCGCGTTTTTGA 60.937 52.632 32.35 11.74 0.00 2.69
2754 2883 1.467556 CTTGTGCGCGCGTTTTTGAA 61.468 50.000 32.35 14.09 0.00 2.69
2755 2884 1.734359 TTGTGCGCGCGTTTTTGAAC 61.734 50.000 32.35 16.62 0.00 3.18
2756 2885 2.100410 TGCGCGCGTTTTTGAACA 59.900 50.000 32.35 15.16 0.00 3.18
2757 2886 1.298713 TGCGCGCGTTTTTGAACAT 60.299 47.368 32.35 0.00 0.00 2.71
2758 2887 1.265462 TGCGCGCGTTTTTGAACATC 61.265 50.000 32.35 10.25 0.00 3.06
2759 2888 0.996727 GCGCGCGTTTTTGAACATCT 60.997 50.000 32.35 0.00 0.00 2.90
2760 2889 0.697010 CGCGCGTTTTTGAACATCTG 59.303 50.000 24.19 0.00 0.00 2.90
2761 2890 0.430858 GCGCGTTTTTGAACATCTGC 59.569 50.000 8.43 0.00 0.00 4.26
2762 2891 1.925946 GCGCGTTTTTGAACATCTGCT 60.926 47.619 8.43 0.00 0.00 4.24
2763 2892 2.384382 CGCGTTTTTGAACATCTGCTT 58.616 42.857 0.00 0.00 0.00 3.91
2764 2893 3.550561 CGCGTTTTTGAACATCTGCTTA 58.449 40.909 0.00 0.00 0.00 3.09
2765 2894 3.971871 CGCGTTTTTGAACATCTGCTTAA 59.028 39.130 0.00 0.00 0.00 1.85
2766 2895 4.087085 CGCGTTTTTGAACATCTGCTTAAG 59.913 41.667 0.00 0.00 0.00 1.85
2767 2896 4.143535 GCGTTTTTGAACATCTGCTTAAGC 60.144 41.667 20.84 20.84 42.50 3.09
2780 2909 1.334869 GCTTAAGCAATGATGGGTCCG 59.665 52.381 22.59 0.00 41.59 4.79
2781 2910 1.949525 CTTAAGCAATGATGGGTCCGG 59.050 52.381 0.00 0.00 0.00 5.14
2782 2911 0.465460 TAAGCAATGATGGGTCCGGC 60.465 55.000 0.00 0.00 0.00 6.13
2783 2912 3.585990 GCAATGATGGGTCCGGCG 61.586 66.667 0.00 0.00 0.00 6.46
2784 2913 2.124736 CAATGATGGGTCCGGCGT 60.125 61.111 6.01 0.00 0.00 5.68
2785 2914 1.145156 CAATGATGGGTCCGGCGTA 59.855 57.895 6.01 0.00 0.00 4.42
2786 2915 1.145377 AATGATGGGTCCGGCGTAC 59.855 57.895 6.01 0.00 0.00 3.67
2787 2916 1.335132 AATGATGGGTCCGGCGTACT 61.335 55.000 6.01 0.00 0.00 2.73
2788 2917 0.468585 ATGATGGGTCCGGCGTACTA 60.469 55.000 6.01 0.00 0.00 1.82
2789 2918 0.683828 TGATGGGTCCGGCGTACTAA 60.684 55.000 6.01 0.00 0.00 2.24
2790 2919 0.461135 GATGGGTCCGGCGTACTAAA 59.539 55.000 6.01 0.00 0.00 1.85
2791 2920 0.903942 ATGGGTCCGGCGTACTAAAA 59.096 50.000 6.01 0.00 0.00 1.52
2792 2921 0.247185 TGGGTCCGGCGTACTAAAAG 59.753 55.000 6.01 0.00 0.00 2.27
2793 2922 0.247460 GGGTCCGGCGTACTAAAAGT 59.753 55.000 6.01 0.00 0.00 2.66
2794 2923 1.353076 GGTCCGGCGTACTAAAAGTG 58.647 55.000 6.01 0.00 0.00 3.16
2795 2924 0.717784 GTCCGGCGTACTAAAAGTGC 59.282 55.000 6.01 0.00 0.00 4.40
2796 2925 0.604578 TCCGGCGTACTAAAAGTGCT 59.395 50.000 6.01 0.00 0.00 4.40
2797 2926 1.818060 TCCGGCGTACTAAAAGTGCTA 59.182 47.619 6.01 0.00 0.00 3.49
2798 2927 1.922545 CCGGCGTACTAAAAGTGCTAC 59.077 52.381 6.01 0.00 0.00 3.58
2799 2928 2.598589 CGGCGTACTAAAAGTGCTACA 58.401 47.619 0.00 0.00 0.00 2.74
2800 2929 2.597305 CGGCGTACTAAAAGTGCTACAG 59.403 50.000 0.00 0.00 0.00 2.74
2801 2930 3.582780 GGCGTACTAAAAGTGCTACAGT 58.417 45.455 0.00 0.00 0.00 3.55
2802 2931 3.367025 GGCGTACTAAAAGTGCTACAGTG 59.633 47.826 0.00 0.00 0.00 3.66
2803 2932 3.367025 GCGTACTAAAAGTGCTACAGTGG 59.633 47.826 0.00 0.00 0.00 4.00
2804 2933 3.367025 CGTACTAAAAGTGCTACAGTGGC 59.633 47.826 0.99 0.99 0.00 5.01
2805 2934 2.413837 ACTAAAAGTGCTACAGTGGCG 58.586 47.619 4.21 0.00 0.00 5.69
2806 2935 1.128692 CTAAAAGTGCTACAGTGGCGC 59.871 52.381 14.31 14.31 40.08 6.53
2807 2936 1.841663 AAAAGTGCTACAGTGGCGCG 61.842 55.000 15.94 0.00 43.87 6.86
2810 2939 3.754530 TGCTACAGTGGCGCGCTA 61.755 61.111 32.29 24.64 0.00 4.26
2811 2940 2.508439 GCTACAGTGGCGCGCTAA 60.508 61.111 32.29 17.34 0.00 3.09
2812 2941 2.098233 GCTACAGTGGCGCGCTAAA 61.098 57.895 32.29 14.50 0.00 1.85
2813 2942 1.632046 GCTACAGTGGCGCGCTAAAA 61.632 55.000 32.29 11.71 0.00 1.52
2814 2943 0.094730 CTACAGTGGCGCGCTAAAAC 59.905 55.000 32.29 22.40 0.00 2.43
2815 2944 0.320073 TACAGTGGCGCGCTAAAACT 60.320 50.000 32.29 24.17 0.00 2.66
2816 2945 0.320073 ACAGTGGCGCGCTAAAACTA 60.320 50.000 32.29 5.94 0.00 2.24
2817 2946 1.006832 CAGTGGCGCGCTAAAACTAT 58.993 50.000 32.29 4.36 0.00 2.12
2818 2947 1.396996 CAGTGGCGCGCTAAAACTATT 59.603 47.619 32.29 6.16 0.00 1.73
2819 2948 2.081462 AGTGGCGCGCTAAAACTATTT 58.919 42.857 32.29 5.82 0.00 1.40
2820 2949 2.486592 AGTGGCGCGCTAAAACTATTTT 59.513 40.909 32.29 5.46 36.67 1.82
2821 2950 3.685756 AGTGGCGCGCTAAAACTATTTTA 59.314 39.130 32.29 0.00 34.19 1.52
2830 2959 5.494632 CTAAAACTATTTTAGGGCACGGG 57.505 43.478 11.59 0.00 45.21 5.28
2831 2960 3.724732 AAACTATTTTAGGGCACGGGA 57.275 42.857 0.00 0.00 0.00 5.14
2832 2961 3.945640 AACTATTTTAGGGCACGGGAT 57.054 42.857 0.00 0.00 0.00 3.85
2833 2962 3.945640 ACTATTTTAGGGCACGGGATT 57.054 42.857 0.00 0.00 0.00 3.01
2834 2963 4.245251 ACTATTTTAGGGCACGGGATTT 57.755 40.909 0.00 0.00 0.00 2.17
2835 2964 4.606210 ACTATTTTAGGGCACGGGATTTT 58.394 39.130 0.00 0.00 0.00 1.82
2836 2965 5.020795 ACTATTTTAGGGCACGGGATTTTT 58.979 37.500 0.00 0.00 0.00 1.94
2837 2966 3.669251 TTTTAGGGCACGGGATTTTTG 57.331 42.857 0.00 0.00 0.00 2.44
2838 2967 2.296073 TTAGGGCACGGGATTTTTGT 57.704 45.000 0.00 0.00 0.00 2.83
2839 2968 1.540267 TAGGGCACGGGATTTTTGTG 58.460 50.000 0.00 0.00 36.70 3.33
2843 2972 3.193471 CACGGGATTTTTGTGCACC 57.807 52.632 15.69 0.00 0.00 5.01
2844 2973 0.673437 CACGGGATTTTTGTGCACCT 59.327 50.000 15.69 0.00 0.00 4.00
2845 2974 0.673437 ACGGGATTTTTGTGCACCTG 59.327 50.000 15.69 4.32 0.00 4.00
2846 2975 0.667184 CGGGATTTTTGTGCACCTGC 60.667 55.000 15.69 0.00 42.50 4.85
2847 2976 0.681175 GGGATTTTTGTGCACCTGCT 59.319 50.000 15.69 0.00 42.66 4.24
2848 2977 1.606224 GGGATTTTTGTGCACCTGCTG 60.606 52.381 15.69 0.00 42.66 4.41
2849 2978 1.606224 GGATTTTTGTGCACCTGCTGG 60.606 52.381 15.69 8.29 42.66 4.85
2850 2979 1.340889 GATTTTTGTGCACCTGCTGGA 59.659 47.619 17.64 0.00 42.66 3.86
2851 2980 0.746063 TTTTTGTGCACCTGCTGGAG 59.254 50.000 17.64 9.86 42.66 3.86
2852 2981 0.106769 TTTTGTGCACCTGCTGGAGA 60.107 50.000 17.64 0.00 42.66 3.71
2853 2982 0.111061 TTTGTGCACCTGCTGGAGAT 59.889 50.000 17.64 0.00 42.66 2.75
2854 2983 0.607217 TTGTGCACCTGCTGGAGATG 60.607 55.000 17.64 5.49 42.66 2.90
2855 2984 2.045634 TGCACCTGCTGGAGATGC 60.046 61.111 17.64 8.80 42.66 3.91
2856 2985 2.271497 GCACCTGCTGGAGATGCT 59.729 61.111 17.64 0.00 38.21 3.79
2857 2986 1.818785 GCACCTGCTGGAGATGCTC 60.819 63.158 17.64 0.00 38.21 4.26
2981 3248 8.593945 AAGCATGAAGAACCCTATAAAATTGA 57.406 30.769 0.00 0.00 0.00 2.57
2984 3251 7.917505 GCATGAAGAACCCTATAAAATTGACAG 59.082 37.037 0.00 0.00 0.00 3.51
3263 3536 5.360999 ACTTTTCCCCAAGTTTCTTCTTCTG 59.639 40.000 0.00 0.00 32.81 3.02
3299 3572 6.822676 AGCAATGCCTCTATTCATTCTATAGC 59.177 38.462 0.00 0.00 31.15 2.97
3300 3573 6.822676 GCAATGCCTCTATTCATTCTATAGCT 59.177 38.462 0.00 0.00 31.15 3.32
3301 3574 7.336427 GCAATGCCTCTATTCATTCTATAGCTT 59.664 37.037 0.00 0.00 31.15 3.74
3302 3575 9.881649 CAATGCCTCTATTCATTCTATAGCTTA 57.118 33.333 0.00 0.00 31.15 3.09
3304 3577 8.885693 TGCCTCTATTCATTCTATAGCTTAGA 57.114 34.615 0.00 0.00 0.00 2.10
3507 3792 8.540507 AGTTATGGACTACATACAGACTGAAT 57.459 34.615 10.08 0.00 41.61 2.57
3508 3793 8.417106 AGTTATGGACTACATACAGACTGAATG 58.583 37.037 10.08 0.00 41.61 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.207329 GAGTAAGTCCCGTGCCAGAAT 59.793 52.381 0.00 0.00 0.00 2.40
51 52 0.606604 GAGTAAGTCCCGTGCCAGAA 59.393 55.000 0.00 0.00 0.00 3.02
52 53 0.541063 TGAGTAAGTCCCGTGCCAGA 60.541 55.000 0.00 0.00 0.00 3.86
54 55 1.541310 CCTGAGTAAGTCCCGTGCCA 61.541 60.000 0.00 0.00 0.00 4.92
55 56 1.218316 CCTGAGTAAGTCCCGTGCC 59.782 63.158 0.00 0.00 0.00 5.01
56 57 1.448013 GCCTGAGTAAGTCCCGTGC 60.448 63.158 0.00 0.00 0.00 5.34
57 58 1.153823 CGCCTGAGTAAGTCCCGTG 60.154 63.158 0.00 0.00 0.00 4.94
58 59 1.303888 TCGCCTGAGTAAGTCCCGT 60.304 57.895 0.00 0.00 0.00 5.28
59 60 1.433879 CTCGCCTGAGTAAGTCCCG 59.566 63.158 0.00 0.00 37.46 5.14
60 61 1.142097 GCTCGCCTGAGTAAGTCCC 59.858 63.158 0.00 0.00 44.48 4.46
61 62 0.179124 CTGCTCGCCTGAGTAAGTCC 60.179 60.000 0.00 0.00 44.48 3.85
62 63 0.811915 TCTGCTCGCCTGAGTAAGTC 59.188 55.000 0.00 0.00 44.48 3.01
63 64 1.257743 TTCTGCTCGCCTGAGTAAGT 58.742 50.000 0.00 0.00 44.48 2.24
64 65 2.370281 TTTCTGCTCGCCTGAGTAAG 57.630 50.000 0.00 0.00 44.48 2.34
65 66 2.299013 TCTTTTCTGCTCGCCTGAGTAA 59.701 45.455 0.00 0.00 44.48 2.24
66 67 1.893137 TCTTTTCTGCTCGCCTGAGTA 59.107 47.619 0.00 0.00 44.48 2.59
67 68 0.681733 TCTTTTCTGCTCGCCTGAGT 59.318 50.000 0.00 0.00 44.48 3.41
68 69 1.462670 GTTCTTTTCTGCTCGCCTGAG 59.537 52.381 0.00 0.00 45.49 3.35
69 70 1.512926 GTTCTTTTCTGCTCGCCTGA 58.487 50.000 0.00 0.00 0.00 3.86
70 71 0.164647 CGTTCTTTTCTGCTCGCCTG 59.835 55.000 0.00 0.00 0.00 4.85
71 72 0.951040 CCGTTCTTTTCTGCTCGCCT 60.951 55.000 0.00 0.00 0.00 5.52
72 73 1.497722 CCGTTCTTTTCTGCTCGCC 59.502 57.895 0.00 0.00 0.00 5.54
73 74 1.497722 CCCGTTCTTTTCTGCTCGC 59.502 57.895 0.00 0.00 0.00 5.03
74 75 1.497722 GCCCGTTCTTTTCTGCTCG 59.502 57.895 0.00 0.00 0.00 5.03
75 76 1.228657 ACGCCCGTTCTTTTCTGCTC 61.229 55.000 0.00 0.00 0.00 4.26
76 77 1.227853 ACGCCCGTTCTTTTCTGCT 60.228 52.632 0.00 0.00 0.00 4.24
77 78 1.082104 CACGCCCGTTCTTTTCTGC 60.082 57.895 0.00 0.00 0.00 4.26
78 79 1.156736 ATCACGCCCGTTCTTTTCTG 58.843 50.000 0.00 0.00 0.00 3.02
79 80 1.804748 GAATCACGCCCGTTCTTTTCT 59.195 47.619 0.00 0.00 0.00 2.52
80 81 1.463528 CGAATCACGCCCGTTCTTTTC 60.464 52.381 0.00 0.00 34.51 2.29
81 82 0.515564 CGAATCACGCCCGTTCTTTT 59.484 50.000 0.00 0.00 34.51 2.27
82 83 0.320073 TCGAATCACGCCCGTTCTTT 60.320 50.000 0.00 0.00 42.26 2.52
83 84 1.012486 GTCGAATCACGCCCGTTCTT 61.012 55.000 0.00 0.00 42.26 2.52
84 85 1.445582 GTCGAATCACGCCCGTTCT 60.446 57.895 0.00 0.00 42.26 3.01
85 86 2.785105 CGTCGAATCACGCCCGTTC 61.785 63.158 0.00 0.00 42.26 3.95
86 87 2.552585 ATCGTCGAATCACGCCCGTT 62.553 55.000 0.00 0.00 39.74 4.44
87 88 2.931713 GATCGTCGAATCACGCCCGT 62.932 60.000 0.00 0.00 39.74 5.28
88 89 2.278596 ATCGTCGAATCACGCCCG 60.279 61.111 0.00 0.00 39.74 6.13
89 90 0.597637 ATGATCGTCGAATCACGCCC 60.598 55.000 0.00 0.00 38.43 6.13
90 91 0.504384 CATGATCGTCGAATCACGCC 59.496 55.000 0.00 0.00 38.43 5.68
91 92 1.449789 CTCATGATCGTCGAATCACGC 59.550 52.381 0.00 0.00 38.43 5.34
92 93 2.987046 TCTCATGATCGTCGAATCACG 58.013 47.619 0.00 0.00 38.43 4.35
93 94 3.181377 GCTTCTCATGATCGTCGAATCAC 59.819 47.826 0.00 0.00 38.43 3.06
99 100 0.936764 CCCGCTTCTCATGATCGTCG 60.937 60.000 0.00 0.00 0.00 5.12
107 108 0.105039 GATTCCGTCCCGCTTCTCAT 59.895 55.000 0.00 0.00 0.00 2.90
153 154 3.256631 ACCAAACACATCAGGAAGCATTC 59.743 43.478 0.00 0.00 46.67 2.67
156 157 2.363306 ACCAAACACATCAGGAAGCA 57.637 45.000 0.00 0.00 0.00 3.91
307 314 6.717289 AGTAGTTGGGCATAATAAGTTCACA 58.283 36.000 0.00 0.00 0.00 3.58
322 329 6.661777 AGACTAAGGAGTAGTAGTAGTTGGG 58.338 44.000 0.00 0.00 43.45 4.12
323 330 8.263640 TGTAGACTAAGGAGTAGTAGTAGTTGG 58.736 40.741 0.00 0.00 43.45 3.77
385 392 9.802039 TGTTTGTTCCCTTATTTTAGTCTGTAT 57.198 29.630 0.00 0.00 0.00 2.29
386 393 9.059260 GTGTTTGTTCCCTTATTTTAGTCTGTA 57.941 33.333 0.00 0.00 0.00 2.74
387 394 7.558444 TGTGTTTGTTCCCTTATTTTAGTCTGT 59.442 33.333 0.00 0.00 0.00 3.41
388 395 7.860872 GTGTGTTTGTTCCCTTATTTTAGTCTG 59.139 37.037 0.00 0.00 0.00 3.51
389 396 7.558444 TGTGTGTTTGTTCCCTTATTTTAGTCT 59.442 33.333 0.00 0.00 0.00 3.24
401 409 4.693095 ACATGTTTTTGTGTGTTTGTTCCC 59.307 37.500 0.00 0.00 0.00 3.97
554 574 4.495690 TTGGACGGATTTATCACCATGA 57.504 40.909 0.00 0.00 0.00 3.07
557 577 3.009695 AGGTTTGGACGGATTTATCACCA 59.990 43.478 0.00 0.00 0.00 4.17
558 578 3.617284 AGGTTTGGACGGATTTATCACC 58.383 45.455 0.00 0.00 0.00 4.02
631 665 4.081406 TGCATACAAAGGCTCAATCAAGT 58.919 39.130 0.00 0.00 32.35 3.16
663 727 8.089115 AGAAGCAAAGTTATGTACAAGAAGAC 57.911 34.615 0.00 0.00 0.00 3.01
707 771 9.998106 ACAGTTTTATAGTAGAAGAGAAGCAAA 57.002 29.630 0.00 0.00 0.00 3.68
708 772 9.424319 CACAGTTTTATAGTAGAAGAGAAGCAA 57.576 33.333 0.00 0.00 0.00 3.91
709 773 7.545965 GCACAGTTTTATAGTAGAAGAGAAGCA 59.454 37.037 0.00 0.00 0.00 3.91
710 774 7.762159 AGCACAGTTTTATAGTAGAAGAGAAGC 59.238 37.037 0.00 0.00 0.00 3.86
713 777 8.396390 CGTAGCACAGTTTTATAGTAGAAGAGA 58.604 37.037 0.00 0.00 0.00 3.10
714 778 8.549777 CGTAGCACAGTTTTATAGTAGAAGAG 57.450 38.462 0.00 0.00 0.00 2.85
740 804 5.873179 TTTTCCAAGAGTAACGCTAATGG 57.127 39.130 0.00 0.00 35.48 3.16
769 833 6.742559 TCCTATTAGTAAACCCATCTGGAC 57.257 41.667 0.00 0.00 37.39 4.02
774 838 6.645415 CGTGTCATCCTATTAGTAAACCCATC 59.355 42.308 0.00 0.00 0.00 3.51
797 861 2.676342 GCTCAATTTTGTACCGGATCGT 59.324 45.455 9.46 0.00 0.00 3.73
839 903 3.069158 CCCCTCCGTTATCAAATACTCGT 59.931 47.826 0.00 0.00 0.00 4.18
840 904 3.069158 ACCCCTCCGTTATCAAATACTCG 59.931 47.826 0.00 0.00 0.00 4.18
841 905 4.684484 ACCCCTCCGTTATCAAATACTC 57.316 45.455 0.00 0.00 0.00 2.59
842 906 5.664457 AGTAACCCCTCCGTTATCAAATACT 59.336 40.000 0.00 0.00 31.19 2.12
843 907 5.922053 AGTAACCCCTCCGTTATCAAATAC 58.078 41.667 0.00 0.00 31.19 1.89
844 908 7.860649 ATAGTAACCCCTCCGTTATCAAATA 57.139 36.000 0.00 0.00 31.19 1.40
845 909 6.758806 ATAGTAACCCCTCCGTTATCAAAT 57.241 37.500 0.00 0.00 31.19 2.32
846 910 7.860649 ATATAGTAACCCCTCCGTTATCAAA 57.139 36.000 0.00 0.00 31.19 2.69
874 938 3.703286 AGTGTGCGTATCGTGCTTATA 57.297 42.857 0.00 0.00 0.00 0.98
875 939 2.579207 AGTGTGCGTATCGTGCTTAT 57.421 45.000 0.00 0.00 0.00 1.73
876 940 2.421073 ACTAGTGTGCGTATCGTGCTTA 59.579 45.455 0.00 0.00 0.00 3.09
877 941 1.201647 ACTAGTGTGCGTATCGTGCTT 59.798 47.619 0.00 0.00 0.00 3.91
886 950 1.732259 GCAATGCTTACTAGTGTGCGT 59.268 47.619 5.39 8.15 0.00 5.24
900 964 1.807886 CTCAGGCTTCTGGCAATGC 59.192 57.895 0.00 0.00 44.01 3.56
1008 1082 1.675641 GTCAAATGGCGCTCCACCT 60.676 57.895 7.64 0.00 46.92 4.00
1143 1217 2.042404 AAAACGTACGGAGGCACCCA 62.042 55.000 21.06 0.00 34.64 4.51
1159 1233 3.413023 CGGCGCGTCGGGTAAAAA 61.413 61.111 27.94 0.00 0.00 1.94
1427 1501 1.927608 GCTGGAGAAAAGGAAGCGGC 61.928 60.000 0.00 0.00 0.00 6.53
1549 1629 2.434359 GTACACCGCCAGCCTCAC 60.434 66.667 0.00 0.00 0.00 3.51
1559 1639 2.181021 GGTCTGAGGCGTACACCG 59.819 66.667 0.00 0.00 40.40 4.94
1913 1993 2.244436 CTTGTGCGGGTTCATGCTCG 62.244 60.000 0.00 0.00 35.08 5.03
1995 2076 2.194597 GGGTTGGTGGACACTGCA 59.805 61.111 2.13 0.00 0.00 4.41
1999 2080 1.053424 TACTCTGGGTTGGTGGACAC 58.947 55.000 0.00 0.00 0.00 3.67
2233 2320 3.745803 GGAGAACCTCGTCGGCGT 61.746 66.667 10.18 0.00 39.49 5.68
2431 2524 1.374758 GCTCCCACGTGTCTTGGAG 60.375 63.158 25.62 25.62 45.83 3.86
2466 2559 2.676822 AGAGCGCGGACTTCCTCA 60.677 61.111 8.83 0.00 0.00 3.86
2476 2569 4.821589 GACCTTGGGGAGAGCGCG 62.822 72.222 0.00 0.00 36.25 6.86
2492 2585 1.480954 GTTCTTAGTCATGCCCGGAGA 59.519 52.381 0.73 0.00 0.00 3.71
2538 2667 1.405526 GGCGTGTTGGAGATGCTCTAA 60.406 52.381 0.00 0.00 0.00 2.10
2539 2668 0.175760 GGCGTGTTGGAGATGCTCTA 59.824 55.000 0.00 0.00 0.00 2.43
2540 2669 1.078848 GGCGTGTTGGAGATGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
2541 2670 2.109126 GGGCGTGTTGGAGATGCTC 61.109 63.158 0.00 0.00 0.00 4.26
2542 2671 2.045926 GGGCGTGTTGGAGATGCT 60.046 61.111 0.00 0.00 0.00 3.79
2543 2672 1.523154 TTTGGGCGTGTTGGAGATGC 61.523 55.000 0.00 0.00 0.00 3.91
2544 2673 0.240945 GTTTGGGCGTGTTGGAGATG 59.759 55.000 0.00 0.00 0.00 2.90
2545 2674 0.179004 TGTTTGGGCGTGTTGGAGAT 60.179 50.000 0.00 0.00 0.00 2.75
2546 2675 1.098712 GTGTTTGGGCGTGTTGGAGA 61.099 55.000 0.00 0.00 0.00 3.71
2547 2676 1.101049 AGTGTTTGGGCGTGTTGGAG 61.101 55.000 0.00 0.00 0.00 3.86
2548 2677 1.077357 AGTGTTTGGGCGTGTTGGA 60.077 52.632 0.00 0.00 0.00 3.53
2549 2678 1.065600 CAGTGTTTGGGCGTGTTGG 59.934 57.895 0.00 0.00 0.00 3.77
2550 2679 1.065600 CCAGTGTTTGGGCGTGTTG 59.934 57.895 0.00 0.00 43.75 3.33
2551 2680 3.520402 CCAGTGTTTGGGCGTGTT 58.480 55.556 0.00 0.00 43.75 3.32
2559 2688 4.326766 CGTGCGGCCCAGTGTTTG 62.327 66.667 0.00 0.00 0.00 2.93
2564 2693 3.835790 TTTTAGCGTGCGGCCCAGT 62.836 57.895 0.00 0.00 45.17 4.00
2565 2694 2.322999 GATTTTAGCGTGCGGCCCAG 62.323 60.000 0.00 0.00 45.17 4.45
2566 2695 2.360600 ATTTTAGCGTGCGGCCCA 60.361 55.556 0.00 0.00 45.17 5.36
2567 2696 2.407616 GATTTTAGCGTGCGGCCC 59.592 61.111 0.00 0.00 45.17 5.80
2568 2697 2.407616 GGATTTTAGCGTGCGGCC 59.592 61.111 0.00 0.00 45.17 6.13
2569 2698 2.022762 CGGATTTTAGCGTGCGGC 59.977 61.111 0.00 0.00 44.05 6.53
2570 2699 2.707039 CCGGATTTTAGCGTGCGG 59.293 61.111 0.00 0.00 42.73 5.69
2571 2700 1.641123 AACCCGGATTTTAGCGTGCG 61.641 55.000 0.73 0.00 0.00 5.34
2572 2701 0.524414 AAACCCGGATTTTAGCGTGC 59.476 50.000 0.73 0.00 0.00 5.34
2573 2702 3.291809 AAAAACCCGGATTTTAGCGTG 57.708 42.857 7.04 0.00 31.50 5.34
2590 2719 3.135994 GGAACTGTCTGGCGTCTAAAAA 58.864 45.455 0.00 0.00 0.00 1.94
2591 2720 2.103432 TGGAACTGTCTGGCGTCTAAAA 59.897 45.455 0.00 0.00 0.00 1.52
2592 2721 1.689813 TGGAACTGTCTGGCGTCTAAA 59.310 47.619 0.00 0.00 0.00 1.85
2593 2722 1.272490 CTGGAACTGTCTGGCGTCTAA 59.728 52.381 0.00 0.00 0.00 2.10
2594 2723 0.888619 CTGGAACTGTCTGGCGTCTA 59.111 55.000 0.00 0.00 0.00 2.59
2595 2724 1.668294 CTGGAACTGTCTGGCGTCT 59.332 57.895 0.00 0.00 0.00 4.18
2596 2725 2.029844 GCTGGAACTGTCTGGCGTC 61.030 63.158 0.00 0.00 0.00 5.19
2597 2726 2.031163 GCTGGAACTGTCTGGCGT 59.969 61.111 0.00 0.00 0.00 5.68
2598 2727 0.108186 TATGCTGGAACTGTCTGGCG 60.108 55.000 0.00 0.00 0.00 5.69
2599 2728 2.012673 CTTATGCTGGAACTGTCTGGC 58.987 52.381 0.00 0.00 0.00 4.85
2600 2729 2.012673 GCTTATGCTGGAACTGTCTGG 58.987 52.381 0.00 0.00 36.03 3.86
2621 2750 0.875040 TTCGCGCGGACTGTTTTACA 60.875 50.000 31.69 1.90 0.00 2.41
2622 2751 0.232816 TTTCGCGCGGACTGTTTTAC 59.767 50.000 31.69 0.00 0.00 2.01
2623 2752 0.935898 TTTTCGCGCGGACTGTTTTA 59.064 45.000 31.69 3.44 0.00 1.52
2624 2753 0.099082 TTTTTCGCGCGGACTGTTTT 59.901 45.000 31.69 0.00 0.00 2.43
2625 2754 1.722677 TTTTTCGCGCGGACTGTTT 59.277 47.368 31.69 0.00 0.00 2.83
2626 2755 3.412061 TTTTTCGCGCGGACTGTT 58.588 50.000 31.69 0.00 0.00 3.16
2640 2769 1.575803 GCGCGCGTCGAATTTATTTTT 59.424 42.857 32.35 0.00 41.67 1.94
2641 2770 1.176838 GCGCGCGTCGAATTTATTTT 58.823 45.000 32.35 0.00 41.67 1.82
2642 2771 0.372334 AGCGCGCGTCGAATTTATTT 59.628 45.000 32.35 0.00 41.67 1.40
2643 2772 0.315059 CAGCGCGCGTCGAATTTATT 60.315 50.000 32.35 0.00 41.67 1.40
2644 2773 1.143373 TCAGCGCGCGTCGAATTTAT 61.143 50.000 32.35 0.00 41.67 1.40
2645 2774 1.345660 TTCAGCGCGCGTCGAATTTA 61.346 50.000 32.35 9.94 41.67 1.40
2646 2775 2.165362 TTTCAGCGCGCGTCGAATTT 62.165 50.000 32.35 1.48 41.67 1.82
2647 2776 2.165362 TTTTCAGCGCGCGTCGAATT 62.165 50.000 32.35 2.41 41.67 2.17
2648 2777 2.165362 TTTTTCAGCGCGCGTCGAAT 62.165 50.000 32.35 3.33 41.67 3.34
2649 2778 2.872515 TTTTTCAGCGCGCGTCGAA 61.873 52.632 32.35 28.17 41.67 3.71
2650 2779 3.331630 TTTTTCAGCGCGCGTCGA 61.332 55.556 32.35 24.18 41.67 4.20
2651 2780 3.150485 GTTTTTCAGCGCGCGTCG 61.150 61.111 32.35 22.18 42.12 5.12
2652 2781 3.150485 CGTTTTTCAGCGCGCGTC 61.150 61.111 32.35 22.88 0.00 5.19
2658 2787 4.851558 AGCTTTTAATAGCGTTTTTCAGCG 59.148 37.500 11.55 0.00 45.82 5.18
2659 2788 5.629435 ACAGCTTTTAATAGCGTTTTTCAGC 59.371 36.000 11.55 0.00 45.82 4.26
2660 2789 8.722342 TTACAGCTTTTAATAGCGTTTTTCAG 57.278 30.769 15.80 4.20 45.82 3.02
2661 2790 9.685828 ATTTACAGCTTTTAATAGCGTTTTTCA 57.314 25.926 15.80 1.35 45.82 2.69
2665 2794 9.685828 TCAAATTTACAGCTTTTAATAGCGTTT 57.314 25.926 15.80 7.19 45.82 3.60
2666 2795 9.341899 CTCAAATTTACAGCTTTTAATAGCGTT 57.658 29.630 15.80 9.07 45.82 4.84
2667 2796 7.968405 CCTCAAATTTACAGCTTTTAATAGCGT 59.032 33.333 11.55 13.73 45.82 5.07
2668 2797 7.044052 GCCTCAAATTTACAGCTTTTAATAGCG 60.044 37.037 11.55 9.39 45.82 4.26
2669 2798 7.044052 CGCCTCAAATTTACAGCTTTTAATAGC 60.044 37.037 9.63 9.63 41.53 2.97
2670 2799 7.968405 ACGCCTCAAATTTACAGCTTTTAATAG 59.032 33.333 0.00 0.00 0.00 1.73
2671 2800 7.822658 ACGCCTCAAATTTACAGCTTTTAATA 58.177 30.769 0.00 0.00 0.00 0.98
2672 2801 6.687604 ACGCCTCAAATTTACAGCTTTTAAT 58.312 32.000 0.00 0.00 0.00 1.40
2673 2802 6.079424 ACGCCTCAAATTTACAGCTTTTAA 57.921 33.333 0.00 0.00 0.00 1.52
2674 2803 5.615984 CGACGCCTCAAATTTACAGCTTTTA 60.616 40.000 0.00 0.00 0.00 1.52
2675 2804 4.546570 GACGCCTCAAATTTACAGCTTTT 58.453 39.130 0.00 0.00 0.00 2.27
2676 2805 3.364964 CGACGCCTCAAATTTACAGCTTT 60.365 43.478 0.00 0.00 0.00 3.51
2677 2806 2.159627 CGACGCCTCAAATTTACAGCTT 59.840 45.455 0.00 0.00 0.00 3.74
2678 2807 1.732259 CGACGCCTCAAATTTACAGCT 59.268 47.619 0.00 0.00 0.00 4.24
2679 2808 1.202031 CCGACGCCTCAAATTTACAGC 60.202 52.381 0.00 0.00 0.00 4.40
2680 2809 2.343101 TCCGACGCCTCAAATTTACAG 58.657 47.619 0.00 0.00 0.00 2.74
2681 2810 2.459060 TCCGACGCCTCAAATTTACA 57.541 45.000 0.00 0.00 0.00 2.41
2682 2811 2.933906 TGATCCGACGCCTCAAATTTAC 59.066 45.455 0.00 0.00 0.00 2.01
2683 2812 3.254470 TGATCCGACGCCTCAAATTTA 57.746 42.857 0.00 0.00 0.00 1.40
2684 2813 2.107950 TGATCCGACGCCTCAAATTT 57.892 45.000 0.00 0.00 0.00 1.82
2685 2814 1.942657 CATGATCCGACGCCTCAAATT 59.057 47.619 2.33 0.00 0.00 1.82
2686 2815 1.586422 CATGATCCGACGCCTCAAAT 58.414 50.000 2.33 0.00 0.00 2.32
2687 2816 1.089481 GCATGATCCGACGCCTCAAA 61.089 55.000 0.00 0.00 0.00 2.69
2688 2817 1.521457 GCATGATCCGACGCCTCAA 60.521 57.895 0.00 0.00 0.00 3.02
2689 2818 2.106938 GCATGATCCGACGCCTCA 59.893 61.111 0.00 0.00 0.00 3.86
2690 2819 3.032609 CGCATGATCCGACGCCTC 61.033 66.667 0.00 0.00 0.00 4.70
2695 2824 3.215606 GAAGCGCGCATGATCCGAC 62.216 63.158 35.10 3.10 0.00 4.79
2696 2825 2.961721 GAAGCGCGCATGATCCGA 60.962 61.111 35.10 0.00 0.00 4.55
2697 2826 3.264159 TGAAGCGCGCATGATCCG 61.264 61.111 35.10 0.00 0.00 4.18
2698 2827 1.980951 TTGTGAAGCGCGCATGATCC 61.981 55.000 35.10 15.67 36.78 3.36
2699 2828 0.028505 ATTGTGAAGCGCGCATGATC 59.971 50.000 35.10 23.99 36.78 2.92
2700 2829 0.452987 AATTGTGAAGCGCGCATGAT 59.547 45.000 35.10 16.44 36.78 2.45
2701 2830 0.240678 AAATTGTGAAGCGCGCATGA 59.759 45.000 35.10 14.12 36.78 3.07
2702 2831 1.578915 GTAAATTGTGAAGCGCGCATG 59.421 47.619 35.10 0.00 36.78 4.06
2703 2832 1.198867 TGTAAATTGTGAAGCGCGCAT 59.801 42.857 35.10 24.08 36.78 4.73
2704 2833 0.588737 TGTAAATTGTGAAGCGCGCA 59.411 45.000 35.10 12.17 34.64 6.09
2705 2834 0.974836 GTGTAAATTGTGAAGCGCGC 59.025 50.000 26.66 26.66 0.00 6.86
2706 2835 2.233355 CAGTGTAAATTGTGAAGCGCG 58.767 47.619 0.00 0.00 0.00 6.86
2707 2836 1.978782 GCAGTGTAAATTGTGAAGCGC 59.021 47.619 0.00 0.00 0.00 5.92
2708 2837 3.266541 TGCAGTGTAAATTGTGAAGCG 57.733 42.857 0.00 0.00 0.00 4.68
2709 2838 4.549458 ACATGCAGTGTAAATTGTGAAGC 58.451 39.130 0.00 0.00 39.91 3.86
2710 2839 6.441274 AGAACATGCAGTGTAAATTGTGAAG 58.559 36.000 0.00 0.00 41.14 3.02
2711 2840 6.262944 AGAGAACATGCAGTGTAAATTGTGAA 59.737 34.615 0.00 0.00 41.14 3.18
2712 2841 5.764686 AGAGAACATGCAGTGTAAATTGTGA 59.235 36.000 0.00 0.00 41.14 3.58
2713 2842 6.005583 AGAGAACATGCAGTGTAAATTGTG 57.994 37.500 0.00 0.00 41.14 3.33
2714 2843 6.039717 ACAAGAGAACATGCAGTGTAAATTGT 59.960 34.615 0.00 4.86 41.14 2.71
2715 2844 6.361481 CACAAGAGAACATGCAGTGTAAATTG 59.639 38.462 0.00 4.33 41.14 2.32
2716 2845 6.441274 CACAAGAGAACATGCAGTGTAAATT 58.559 36.000 0.00 0.00 41.14 1.82
2717 2846 5.563475 GCACAAGAGAACATGCAGTGTAAAT 60.563 40.000 0.00 0.00 41.14 1.40
2718 2847 4.261155 GCACAAGAGAACATGCAGTGTAAA 60.261 41.667 0.00 0.00 41.14 2.01
2719 2848 3.250762 GCACAAGAGAACATGCAGTGTAA 59.749 43.478 0.00 0.00 41.14 2.41
2720 2849 2.807967 GCACAAGAGAACATGCAGTGTA 59.192 45.455 0.00 0.00 41.14 2.90
2721 2850 1.605710 GCACAAGAGAACATGCAGTGT 59.394 47.619 0.00 0.00 44.84 3.55
2722 2851 1.399343 CGCACAAGAGAACATGCAGTG 60.399 52.381 0.00 0.00 37.97 3.66
2723 2852 0.870393 CGCACAAGAGAACATGCAGT 59.130 50.000 0.00 0.00 37.97 4.40
2724 2853 0.453950 GCGCACAAGAGAACATGCAG 60.454 55.000 0.30 0.00 37.97 4.41
2725 2854 1.575922 GCGCACAAGAGAACATGCA 59.424 52.632 0.30 0.00 37.97 3.96
2726 2855 1.510623 CGCGCACAAGAGAACATGC 60.511 57.895 8.75 0.00 34.66 4.06
2727 2856 1.510623 GCGCGCACAAGAGAACATG 60.511 57.895 29.10 0.00 0.00 3.21
2728 2857 2.863153 GCGCGCACAAGAGAACAT 59.137 55.556 29.10 0.00 0.00 2.71
2729 2858 3.701530 CGCGCGCACAAGAGAACA 61.702 61.111 32.61 0.00 0.00 3.18
2730 2859 2.695712 AAACGCGCGCACAAGAGAAC 62.696 55.000 32.58 0.00 0.00 3.01
2731 2860 2.042520 AAAACGCGCGCACAAGAGAA 62.043 50.000 32.58 0.00 0.00 2.87
2732 2861 2.042520 AAAAACGCGCGCACAAGAGA 62.043 50.000 32.58 0.00 0.00 3.10
2733 2862 1.654137 AAAAACGCGCGCACAAGAG 60.654 52.632 32.58 16.12 0.00 2.85
2734 2863 1.936880 CAAAAACGCGCGCACAAGA 60.937 52.632 32.58 0.00 0.00 3.02
2735 2864 1.467556 TTCAAAAACGCGCGCACAAG 61.468 50.000 32.58 17.34 0.00 3.16
2736 2865 1.514228 TTCAAAAACGCGCGCACAA 60.514 47.368 32.58 11.40 0.00 3.33
2737 2866 2.100410 TTCAAAAACGCGCGCACA 59.900 50.000 32.58 4.88 0.00 4.57
2738 2867 1.536462 ATGTTCAAAAACGCGCGCAC 61.536 50.000 32.58 19.00 38.28 5.34
2739 2868 1.265462 GATGTTCAAAAACGCGCGCA 61.265 50.000 32.58 17.60 38.28 6.09
2740 2869 0.996727 AGATGTTCAAAAACGCGCGC 60.997 50.000 32.58 23.91 38.28 6.86
2741 2870 0.697010 CAGATGTTCAAAAACGCGCG 59.303 50.000 30.96 30.96 38.28 6.86
2742 2871 0.430858 GCAGATGTTCAAAAACGCGC 59.569 50.000 5.73 0.00 38.28 6.86
2743 2872 2.036556 AGCAGATGTTCAAAAACGCG 57.963 45.000 3.53 3.53 38.28 6.01
2744 2873 4.143535 GCTTAAGCAGATGTTCAAAAACGC 60.144 41.667 22.59 0.00 41.59 4.84
2745 2874 5.486095 GCTTAAGCAGATGTTCAAAAACG 57.514 39.130 22.59 0.00 41.59 3.60
2760 2889 1.334869 CGGACCCATCATTGCTTAAGC 59.665 52.381 20.84 20.84 42.50 3.09
2761 2890 1.949525 CCGGACCCATCATTGCTTAAG 59.050 52.381 0.00 0.00 0.00 1.85
2762 2891 2.021723 GCCGGACCCATCATTGCTTAA 61.022 52.381 5.05 0.00 0.00 1.85
2763 2892 0.465460 GCCGGACCCATCATTGCTTA 60.465 55.000 5.05 0.00 0.00 3.09
2764 2893 1.754234 GCCGGACCCATCATTGCTT 60.754 57.895 5.05 0.00 0.00 3.91
2765 2894 2.124151 GCCGGACCCATCATTGCT 60.124 61.111 5.05 0.00 0.00 3.91
2766 2895 2.933878 TACGCCGGACCCATCATTGC 62.934 60.000 5.05 0.00 0.00 3.56
2767 2896 1.145156 TACGCCGGACCCATCATTG 59.855 57.895 5.05 0.00 0.00 2.82
2768 2897 1.145377 GTACGCCGGACCCATCATT 59.855 57.895 5.05 0.00 0.00 2.57
2769 2898 0.468585 TAGTACGCCGGACCCATCAT 60.469 55.000 5.05 0.00 0.00 2.45
2770 2899 0.683828 TTAGTACGCCGGACCCATCA 60.684 55.000 5.05 0.00 0.00 3.07
2771 2900 0.461135 TTTAGTACGCCGGACCCATC 59.539 55.000 5.05 0.00 0.00 3.51
2772 2901 0.903942 TTTTAGTACGCCGGACCCAT 59.096 50.000 5.05 0.00 0.00 4.00
2773 2902 0.247185 CTTTTAGTACGCCGGACCCA 59.753 55.000 5.05 0.00 0.00 4.51
2774 2903 0.247460 ACTTTTAGTACGCCGGACCC 59.753 55.000 5.05 0.00 0.00 4.46
2775 2904 1.353076 CACTTTTAGTACGCCGGACC 58.647 55.000 5.05 0.00 0.00 4.46
2776 2905 0.717784 GCACTTTTAGTACGCCGGAC 59.282 55.000 5.05 0.00 0.00 4.79
2777 2906 0.604578 AGCACTTTTAGTACGCCGGA 59.395 50.000 5.05 0.00 0.00 5.14
2778 2907 1.922545 GTAGCACTTTTAGTACGCCGG 59.077 52.381 0.00 0.00 0.00 6.13
2779 2908 2.597305 CTGTAGCACTTTTAGTACGCCG 59.403 50.000 0.00 0.00 0.00 6.46
2780 2909 3.367025 CACTGTAGCACTTTTAGTACGCC 59.633 47.826 0.00 0.00 0.00 5.68
2781 2910 3.367025 CCACTGTAGCACTTTTAGTACGC 59.633 47.826 0.00 0.00 0.00 4.42
2782 2911 3.367025 GCCACTGTAGCACTTTTAGTACG 59.633 47.826 0.00 0.00 0.00 3.67
2783 2912 3.367025 CGCCACTGTAGCACTTTTAGTAC 59.633 47.826 0.00 0.00 0.00 2.73
2784 2913 3.581755 CGCCACTGTAGCACTTTTAGTA 58.418 45.455 0.00 0.00 0.00 1.82
2785 2914 2.413837 CGCCACTGTAGCACTTTTAGT 58.586 47.619 0.00 0.00 0.00 2.24
2786 2915 1.128692 GCGCCACTGTAGCACTTTTAG 59.871 52.381 0.00 0.00 0.00 1.85
2787 2916 1.153353 GCGCCACTGTAGCACTTTTA 58.847 50.000 0.00 0.00 0.00 1.52
2788 2917 1.841663 CGCGCCACTGTAGCACTTTT 61.842 55.000 0.00 0.00 0.00 2.27
2789 2918 2.317609 CGCGCCACTGTAGCACTTT 61.318 57.895 0.00 0.00 0.00 2.66
2790 2919 2.738521 CGCGCCACTGTAGCACTT 60.739 61.111 0.00 0.00 0.00 3.16
2792 2921 3.982372 TAGCGCGCCACTGTAGCAC 62.982 63.158 30.33 0.00 0.00 4.40
2793 2922 2.773397 TTTAGCGCGCCACTGTAGCA 62.773 55.000 30.33 0.71 0.00 3.49
2794 2923 1.632046 TTTTAGCGCGCCACTGTAGC 61.632 55.000 30.33 0.00 0.00 3.58
2795 2924 0.094730 GTTTTAGCGCGCCACTGTAG 59.905 55.000 30.33 0.00 0.00 2.74
2796 2925 0.320073 AGTTTTAGCGCGCCACTGTA 60.320 50.000 30.33 10.64 0.00 2.74
2797 2926 0.320073 TAGTTTTAGCGCGCCACTGT 60.320 50.000 30.33 11.88 0.00 3.55
2798 2927 1.006832 ATAGTTTTAGCGCGCCACTG 58.993 50.000 30.33 0.00 0.00 3.66
2799 2928 1.734163 AATAGTTTTAGCGCGCCACT 58.266 45.000 30.33 25.00 0.00 4.00
2800 2929 2.537639 AAATAGTTTTAGCGCGCCAC 57.462 45.000 30.33 19.26 0.00 5.01
2801 2930 3.064271 CCTAAAATAGTTTTAGCGCGCCA 59.936 43.478 30.33 12.88 46.75 5.69
2802 2931 3.547413 CCCTAAAATAGTTTTAGCGCGCC 60.547 47.826 30.33 12.43 46.75 6.53
2803 2932 3.614588 CCCTAAAATAGTTTTAGCGCGC 58.385 45.455 26.66 26.66 46.75 6.86
2804 2933 3.614588 GCCCTAAAATAGTTTTAGCGCG 58.385 45.455 0.00 0.00 46.75 6.86
2806 2935 4.495184 CCGTGCCCTAAAATAGTTTTAGCG 60.495 45.833 13.91 11.93 46.75 4.26
2807 2936 4.201980 CCCGTGCCCTAAAATAGTTTTAGC 60.202 45.833 13.91 7.65 46.75 3.09
2809 2938 5.176741 TCCCGTGCCCTAAAATAGTTTTA 57.823 39.130 0.00 0.00 34.19 1.52
2810 2939 4.036941 TCCCGTGCCCTAAAATAGTTTT 57.963 40.909 0.00 0.00 36.67 2.43
2811 2940 3.724732 TCCCGTGCCCTAAAATAGTTT 57.275 42.857 0.00 0.00 0.00 2.66
2812 2941 3.945640 ATCCCGTGCCCTAAAATAGTT 57.054 42.857 0.00 0.00 0.00 2.24
2813 2942 3.945640 AATCCCGTGCCCTAAAATAGT 57.054 42.857 0.00 0.00 0.00 2.12
2814 2943 5.105513 ACAAAAATCCCGTGCCCTAAAATAG 60.106 40.000 0.00 0.00 0.00 1.73
2815 2944 4.773149 ACAAAAATCCCGTGCCCTAAAATA 59.227 37.500 0.00 0.00 0.00 1.40
2816 2945 3.580895 ACAAAAATCCCGTGCCCTAAAAT 59.419 39.130 0.00 0.00 0.00 1.82
2817 2946 2.966516 ACAAAAATCCCGTGCCCTAAAA 59.033 40.909 0.00 0.00 0.00 1.52
2818 2947 2.297597 CACAAAAATCCCGTGCCCTAAA 59.702 45.455 0.00 0.00 0.00 1.85
2819 2948 1.889829 CACAAAAATCCCGTGCCCTAA 59.110 47.619 0.00 0.00 0.00 2.69
2820 2949 1.540267 CACAAAAATCCCGTGCCCTA 58.460 50.000 0.00 0.00 0.00 3.53
2821 2950 2.350738 CACAAAAATCCCGTGCCCT 58.649 52.632 0.00 0.00 0.00 5.19
2822 2951 4.985845 CACAAAAATCCCGTGCCC 57.014 55.556 0.00 0.00 0.00 5.36
2825 2954 0.673437 AGGTGCACAAAAATCCCGTG 59.327 50.000 20.43 0.00 0.00 4.94
2826 2955 0.673437 CAGGTGCACAAAAATCCCGT 59.327 50.000 20.43 0.00 0.00 5.28
2827 2956 0.667184 GCAGGTGCACAAAAATCCCG 60.667 55.000 20.43 0.00 41.59 5.14
2828 2957 0.681175 AGCAGGTGCACAAAAATCCC 59.319 50.000 20.43 0.00 45.16 3.85
2829 2958 1.606224 CCAGCAGGTGCACAAAAATCC 60.606 52.381 20.43 0.00 45.16 3.01
2830 2959 1.340889 TCCAGCAGGTGCACAAAAATC 59.659 47.619 20.43 0.00 45.16 2.17
2831 2960 1.342174 CTCCAGCAGGTGCACAAAAAT 59.658 47.619 20.43 0.00 45.16 1.82
2832 2961 0.746063 CTCCAGCAGGTGCACAAAAA 59.254 50.000 20.43 0.00 45.16 1.94
2833 2962 0.106769 TCTCCAGCAGGTGCACAAAA 60.107 50.000 20.43 0.00 45.16 2.44
2834 2963 0.111061 ATCTCCAGCAGGTGCACAAA 59.889 50.000 20.43 0.00 45.16 2.83
2835 2964 0.607217 CATCTCCAGCAGGTGCACAA 60.607 55.000 20.43 0.00 45.16 3.33
2836 2965 1.002990 CATCTCCAGCAGGTGCACA 60.003 57.895 20.43 0.00 45.16 4.57
2837 2966 3.900855 CATCTCCAGCAGGTGCAC 58.099 61.111 8.80 8.80 45.16 4.57
2840 2969 4.536316 GAGCATCTCCAGCAGGTG 57.464 61.111 0.00 0.00 36.12 4.00
2920 3049 6.616774 ATTTTTCATTTTGCGTTGTGGATT 57.383 29.167 0.00 0.00 0.00 3.01
2981 3248 0.457851 GCAGCTCGGATACTGTCTGT 59.542 55.000 9.19 0.00 36.26 3.41
2984 3251 0.317436 CTCGCAGCTCGGATACTGTC 60.317 60.000 9.19 2.88 39.05 3.51
3245 3518 4.762251 CCTAACAGAAGAAGAAACTTGGGG 59.238 45.833 0.00 0.00 0.00 4.96
3263 3536 4.974399 AGAGGCATTGCTATTACCCTAAC 58.026 43.478 8.82 0.00 0.00 2.34
3296 3569 8.706322 AAAGGACAAAAGGAAATTCTAAGCTA 57.294 30.769 0.00 0.00 0.00 3.32
3297 3570 7.603180 AAAGGACAAAAGGAAATTCTAAGCT 57.397 32.000 0.00 0.00 0.00 3.74
3298 3571 9.411801 CTAAAAGGACAAAAGGAAATTCTAAGC 57.588 33.333 0.00 0.00 0.00 3.09
3299 3572 9.411801 GCTAAAAGGACAAAAGGAAATTCTAAG 57.588 33.333 0.00 0.00 0.00 2.18
3300 3573 9.143155 AGCTAAAAGGACAAAAGGAAATTCTAA 57.857 29.630 0.00 0.00 0.00 2.10
3301 3574 8.706322 AGCTAAAAGGACAAAAGGAAATTCTA 57.294 30.769 0.00 0.00 0.00 2.10
3302 3575 7.603180 AGCTAAAAGGACAAAAGGAAATTCT 57.397 32.000 0.00 0.00 0.00 2.40
3303 3576 8.551205 CAAAGCTAAAAGGACAAAAGGAAATTC 58.449 33.333 0.00 0.00 0.00 2.17
3304 3577 8.046708 ACAAAGCTAAAAGGACAAAAGGAAATT 58.953 29.630 0.00 0.00 0.00 1.82
3309 3582 9.626045 CTAATACAAAGCTAAAAGGACAAAAGG 57.374 33.333 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.