Multiple sequence alignment - TraesCS3B01G424500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G424500 chr3B 100.000 3554 0 0 1 3554 662480828 662477275 0.000000e+00 6564.0
1 TraesCS3B01G424500 chr3B 89.505 1696 138 27 894 2568 662528065 662526389 0.000000e+00 2109.0
2 TraesCS3B01G424500 chr3B 94.389 303 17 0 1 303 536445941 536446243 1.930000e-127 466.0
3 TraesCS3B01G424500 chr3B 90.291 309 27 3 1397 1705 461747723 461748028 5.530000e-108 401.0
4 TraesCS3B01G424500 chr3B 87.006 354 44 1 2213 2564 662508554 662508201 7.150000e-107 398.0
5 TraesCS3B01G424500 chr3B 95.714 70 3 0 623 692 636452041 636452110 2.900000e-21 113.0
6 TraesCS3B01G424500 chr3B 94.444 54 2 1 530 582 3138845 3138792 8.180000e-12 82.4
7 TraesCS3B01G424500 chr3D 94.473 2497 89 19 719 3171 501032569 501030078 0.000000e+00 3801.0
8 TraesCS3B01G424500 chr3D 89.471 1681 143 21 895 2555 501062420 501060754 0.000000e+00 2093.0
9 TraesCS3B01G424500 chr3D 87.662 308 25 6 1398 1705 549642850 549642556 2.630000e-91 346.0
10 TraesCS3B01G424500 chr3D 88.496 226 15 5 311 533 501033005 501032788 2.720000e-66 263.0
11 TraesCS3B01G424500 chr3D 81.595 326 45 10 1314 1627 501046506 501046828 4.550000e-64 255.0
12 TraesCS3B01G424500 chr3D 90.256 195 17 2 1511 1705 54395458 54395266 1.640000e-63 254.0
13 TraesCS3B01G424500 chr3D 86.111 144 17 3 3177 3318 7408548 7408690 6.150000e-33 152.0
14 TraesCS3B01G424500 chr3D 82.883 111 16 3 3206 3314 453981565 453981456 2.920000e-16 97.1
15 TraesCS3B01G424500 chr3D 91.071 56 5 0 524 579 461332239 461332294 3.800000e-10 76.8
16 TraesCS3B01G424500 chr3D 97.368 38 1 0 688 725 501032744 501032707 8.240000e-07 65.8
17 TraesCS3B01G424500 chr3A 94.187 2219 77 18 710 2885 640391064 640393273 0.000000e+00 3336.0
18 TraesCS3B01G424500 chr3A 94.658 1610 67 9 959 2568 640497683 640499273 0.000000e+00 2479.0
19 TraesCS3B01G424500 chr3A 89.816 1689 129 23 894 2555 640363231 640364903 0.000000e+00 2126.0
20 TraesCS3B01G424500 chr3A 88.833 600 46 7 2590 3171 640500663 640501259 0.000000e+00 717.0
21 TraesCS3B01G424500 chr3A 91.696 289 23 1 2883 3171 640393360 640393647 1.990000e-107 399.0
22 TraesCS3B01G424500 chr3A 94.048 252 12 2 714 965 640482220 640482468 2.590000e-101 379.0
23 TraesCS3B01G424500 chr3A 85.069 288 42 1 1398 1685 459376215 459375929 3.470000e-75 292.0
24 TraesCS3B01G424500 chr3A 88.444 225 16 5 311 533 640481788 640482004 2.720000e-66 263.0
25 TraesCS3B01G424500 chr3A 86.957 230 15 6 311 533 640390632 640390853 9.860000e-61 244.0
26 TraesCS3B01G424500 chr3A 84.564 149 15 7 3176 3324 704350741 704350881 1.330000e-29 141.0
27 TraesCS3B01G424500 chr3A 97.368 38 1 0 688 725 640390897 640390934 8.240000e-07 65.8
28 TraesCS3B01G424500 chr7B 94.463 307 16 1 1 307 708890559 708890864 4.150000e-129 472.0
29 TraesCS3B01G424500 chr7B 84.615 156 19 4 3173 3324 579566583 579566429 2.210000e-32 150.0
30 TraesCS3B01G424500 chr7B 94.030 67 4 0 625 691 296330892 296330826 6.280000e-18 102.0
31 TraesCS3B01G424500 chr6B 94.389 303 17 0 1 303 85714259 85714561 1.930000e-127 466.0
32 TraesCS3B01G424500 chr6B 87.029 239 31 0 1467 1705 558351350 558351112 1.630000e-68 270.0
33 TraesCS3B01G424500 chr6B 86.301 146 17 3 3175 3318 663172399 663172255 4.750000e-34 156.0
34 TraesCS3B01G424500 chr6B 85.430 151 15 7 3176 3322 599807034 599806887 2.210000e-32 150.0
35 TraesCS3B01G424500 chr6B 91.781 73 4 1 624 694 14541143 14541071 2.260000e-17 100.0
36 TraesCS3B01G424500 chr6B 94.340 53 3 0 530 582 551542666 551542718 8.180000e-12 82.4
37 TraesCS3B01G424500 chr6B 87.500 64 8 0 531 594 468624614 468624677 1.370000e-09 75.0
38 TraesCS3B01G424500 chr6B 87.500 64 8 0 531 594 468652707 468652770 1.370000e-09 75.0
39 TraesCS3B01G424500 chr1B 94.389 303 17 0 1 303 679333770 679334072 1.930000e-127 466.0
40 TraesCS3B01G424500 chr1B 94.389 303 17 0 1 303 684807690 684807388 1.930000e-127 466.0
41 TraesCS3B01G424500 chr1B 91.064 235 21 0 1467 1701 530664458 530664224 5.730000e-83 318.0
42 TraesCS3B01G424500 chr5B 93.851 309 17 2 1 309 575245029 575244723 6.950000e-127 464.0
43 TraesCS3B01G424500 chr5B 93.811 307 18 1 1 307 544803132 544803437 8.990000e-126 460.0
44 TraesCS3B01G424500 chr2B 94.389 303 16 1 1 303 153890760 153891061 6.950000e-127 464.0
45 TraesCS3B01G424500 chr2B 84.768 151 19 4 3176 3323 772392843 772392694 7.950000e-32 148.0
46 TraesCS3B01G424500 chr2B 93.103 58 2 2 530 585 4647245 4647302 2.270000e-12 84.2
47 TraesCS3B01G424500 chr2B 80.435 92 12 5 530 616 315974286 315974376 8.240000e-07 65.8
48 TraesCS3B01G424500 chr1D 94.079 304 18 0 1 304 359693231 359693534 2.500000e-126 462.0
49 TraesCS3B01G424500 chr1D 87.435 382 23 12 3173 3553 260615407 260615050 1.970000e-112 416.0
50 TraesCS3B01G424500 chr1D 88.961 308 33 1 1398 1705 489787947 489788253 2.590000e-101 379.0
51 TraesCS3B01G424500 chr5D 91.409 291 24 1 1415 1705 47629231 47629520 7.150000e-107 398.0
52 TraesCS3B01G424500 chr5A 88.703 239 27 0 1467 1705 532561449 532561687 3.470000e-75 292.0
53 TraesCS3B01G424500 chr5A 90.659 182 17 0 1521 1702 532561711 532561892 3.540000e-60 243.0
54 TraesCS3B01G424500 chr5A 81.481 162 19 9 3176 3330 104613174 104613017 4.820000e-24 122.0
55 TraesCS3B01G424500 chr2D 83.784 148 18 5 3176 3318 186956947 186956801 6.190000e-28 135.0
56 TraesCS3B01G424500 chr2D 82.993 147 19 6 3176 3319 378358615 378358472 1.040000e-25 128.0
57 TraesCS3B01G424500 chr2D 94.118 68 3 1 3257 3323 575764753 575764820 6.280000e-18 102.0
58 TraesCS3B01G424500 chr2D 92.754 69 4 1 624 691 13474564 13474496 8.120000e-17 99.0
59 TraesCS3B01G424500 chr4B 83.108 148 19 5 3181 3323 671617725 671617579 2.880000e-26 130.0
60 TraesCS3B01G424500 chr4B 81.081 148 23 4 3176 3320 417408382 417408237 2.900000e-21 113.0
61 TraesCS3B01G424500 chr4B 87.879 66 4 4 531 595 110358679 110358617 1.370000e-09 75.0
62 TraesCS3B01G424500 chr4B 91.071 56 4 1 531 585 586463966 586464021 1.370000e-09 75.0
63 TraesCS3B01G424500 chr7D 81.046 153 22 5 3175 3323 115137170 115137319 8.060000e-22 115.0
64 TraesCS3B01G424500 chr7D 79.870 154 23 6 3175 3323 94796652 94796502 4.850000e-19 106.0
65 TraesCS3B01G424500 chr7D 91.667 72 5 1 620 691 604972454 604972524 8.120000e-17 99.0
66 TraesCS3B01G424500 chr4A 95.588 68 3 0 626 693 456483241 456483174 3.750000e-20 110.0
67 TraesCS3B01G424500 chr1A 94.030 67 4 0 627 693 290331208 290331274 6.280000e-18 102.0
68 TraesCS3B01G424500 chr1A 83.478 115 10 6 3193 3302 239106784 239106894 8.120000e-17 99.0
69 TraesCS3B01G424500 chr1A 90.541 74 4 1 623 693 6430021 6430094 1.050000e-15 95.3
70 TraesCS3B01G424500 chr1A 90.278 72 5 2 3248 3318 561724882 561724952 3.780000e-15 93.5
71 TraesCS3B01G424500 chr6D 93.846 65 4 0 630 694 25612796 25612732 8.120000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G424500 chr3B 662477275 662480828 3553 True 6564.0 6564 100.000000 1 3554 1 chr3B.!!$R2 3553
1 TraesCS3B01G424500 chr3B 662526389 662528065 1676 True 2109.0 2109 89.505000 894 2568 1 chr3B.!!$R4 1674
2 TraesCS3B01G424500 chr3D 501060754 501062420 1666 True 2093.0 2093 89.471000 895 2555 1 chr3D.!!$R3 1660
3 TraesCS3B01G424500 chr3D 501030078 501033005 2927 True 1376.6 3801 93.445667 311 3171 3 chr3D.!!$R5 2860
4 TraesCS3B01G424500 chr3A 640363231 640364903 1672 False 2126.0 2126 89.816000 894 2555 1 chr3A.!!$F1 1661
5 TraesCS3B01G424500 chr3A 640497683 640501259 3576 False 1598.0 2479 91.745500 959 3171 2 chr3A.!!$F5 2212
6 TraesCS3B01G424500 chr3A 640390632 640393647 3015 False 1011.2 3336 92.552000 311 3171 4 chr3A.!!$F3 2860
7 TraesCS3B01G424500 chr3A 640481788 640482468 680 False 321.0 379 91.246000 311 965 2 chr3A.!!$F4 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.036388 CAGCAGAAAACCGAGGCCTA 60.036 55.000 4.42 0.0 0.0 3.93 F
182 183 0.044855 AAGCCCATCCAGACCCTACT 59.955 55.000 0.00 0.0 0.0 2.57 F
308 309 0.105039 GATGGCCAGGACTAACTCGG 59.895 60.000 13.05 0.0 0.0 4.63 F
993 1161 1.211703 ACCCAGTTCATCACACACACA 59.788 47.619 0.00 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1335 2.747686 GACCTTGGTCGCCTTGGA 59.252 61.111 3.87 0.0 0.00 3.53 R
2196 2375 0.254178 AGTGAAGCGCCTCCATGAAT 59.746 50.000 2.29 0.0 0.00 2.57 R
2445 2624 4.161295 CCGCCGGCATTCTCCTCA 62.161 66.667 28.98 0.0 0.00 3.86 R
3084 4759 1.639298 GCTCAACACTTAGCAGCGGG 61.639 60.000 0.00 0.0 38.63 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.644992 GCCCACAGCAGAAAACCG 59.355 61.111 0.00 0.00 42.97 4.44
21 22 1.896660 GCCCACAGCAGAAAACCGA 60.897 57.895 0.00 0.00 42.97 4.69
22 23 1.856265 GCCCACAGCAGAAAACCGAG 61.856 60.000 0.00 0.00 42.97 4.63
23 24 1.237285 CCCACAGCAGAAAACCGAGG 61.237 60.000 0.00 0.00 0.00 4.63
24 25 1.576421 CACAGCAGAAAACCGAGGC 59.424 57.895 0.00 0.00 0.00 4.70
25 26 1.600916 ACAGCAGAAAACCGAGGCC 60.601 57.895 0.00 0.00 0.00 5.19
26 27 1.302832 CAGCAGAAAACCGAGGCCT 60.303 57.895 3.86 3.86 0.00 5.19
27 28 0.036388 CAGCAGAAAACCGAGGCCTA 60.036 55.000 4.42 0.00 0.00 3.93
28 29 0.250513 AGCAGAAAACCGAGGCCTAG 59.749 55.000 4.42 5.21 0.00 3.02
29 30 0.744771 GCAGAAAACCGAGGCCTAGG 60.745 60.000 28.76 28.76 0.00 3.02
30 31 0.744771 CAGAAAACCGAGGCCTAGGC 60.745 60.000 30.10 26.55 41.06 3.93
40 41 2.366972 GCCTAGGCCCTCCCAAGA 60.367 66.667 24.19 0.00 35.39 3.02
41 42 2.747443 GCCTAGGCCCTCCCAAGAC 61.747 68.421 24.19 0.00 35.39 3.01
42 43 2.073101 CCTAGGCCCTCCCAAGACC 61.073 68.421 0.00 0.00 35.39 3.85
43 44 1.003573 CTAGGCCCTCCCAAGACCT 59.996 63.158 0.00 0.00 35.39 3.85
44 45 0.264955 CTAGGCCCTCCCAAGACCTA 59.735 60.000 0.00 0.00 35.39 3.08
45 46 0.949582 TAGGCCCTCCCAAGACCTAT 59.050 55.000 0.00 0.00 35.39 2.57
46 47 0.400670 AGGCCCTCCCAAGACCTATC 60.401 60.000 0.00 0.00 35.39 2.08
47 48 0.694444 GGCCCTCCCAAGACCTATCA 60.694 60.000 0.00 0.00 0.00 2.15
48 49 0.470341 GCCCTCCCAAGACCTATCAC 59.530 60.000 0.00 0.00 0.00 3.06
49 50 1.972207 GCCCTCCCAAGACCTATCACT 60.972 57.143 0.00 0.00 0.00 3.41
50 51 2.693074 GCCCTCCCAAGACCTATCACTA 60.693 54.545 0.00 0.00 0.00 2.74
51 52 3.235200 CCCTCCCAAGACCTATCACTAG 58.765 54.545 0.00 0.00 0.00 2.57
63 64 5.871396 CCTATCACTAGGCCTACTTTTCA 57.129 43.478 8.91 0.00 38.29 2.69
64 65 6.235231 CCTATCACTAGGCCTACTTTTCAA 57.765 41.667 8.91 0.00 38.29 2.69
65 66 6.284459 CCTATCACTAGGCCTACTTTTCAAG 58.716 44.000 8.91 0.00 38.29 3.02
66 67 3.939066 TCACTAGGCCTACTTTTCAAGC 58.061 45.455 8.91 0.00 0.00 4.01
67 68 3.010420 CACTAGGCCTACTTTTCAAGCC 58.990 50.000 8.91 0.00 44.20 4.35
68 69 2.026169 ACTAGGCCTACTTTTCAAGCCC 60.026 50.000 8.91 0.00 45.00 5.19
69 70 0.777446 AGGCCTACTTTTCAAGCCCA 59.223 50.000 1.29 0.00 45.00 5.36
70 71 1.146982 AGGCCTACTTTTCAAGCCCAA 59.853 47.619 1.29 0.00 45.00 4.12
71 72 1.546029 GGCCTACTTTTCAAGCCCAAG 59.454 52.381 0.00 0.00 37.66 3.61
72 73 1.067565 GCCTACTTTTCAAGCCCAAGC 60.068 52.381 0.00 0.00 40.32 4.01
73 74 1.546029 CCTACTTTTCAAGCCCAAGCC 59.454 52.381 0.00 0.00 41.25 4.35
74 75 1.546029 CTACTTTTCAAGCCCAAGCCC 59.454 52.381 0.00 0.00 41.25 5.19
75 76 1.290009 CTTTTCAAGCCCAAGCCCG 59.710 57.895 0.00 0.00 41.25 6.13
76 77 2.158561 CTTTTCAAGCCCAAGCCCGG 62.159 60.000 0.00 0.00 41.25 5.73
87 88 4.815973 AGCCCGGCCCATCTGGTA 62.816 66.667 5.55 0.00 39.73 3.25
88 89 3.804329 GCCCGGCCCATCTGGTAA 61.804 66.667 0.00 0.00 39.73 2.85
89 90 3.003230 CCCGGCCCATCTGGTAAA 58.997 61.111 0.00 0.00 39.73 2.01
90 91 1.304952 CCCGGCCCATCTGGTAAAA 59.695 57.895 0.00 0.00 39.73 1.52
91 92 0.323908 CCCGGCCCATCTGGTAAAAA 60.324 55.000 0.00 0.00 39.73 1.94
92 93 1.102978 CCGGCCCATCTGGTAAAAAG 58.897 55.000 0.00 0.00 36.43 2.27
93 94 0.455815 CGGCCCATCTGGTAAAAAGC 59.544 55.000 0.00 0.00 36.04 3.51
94 95 0.824109 GGCCCATCTGGTAAAAAGCC 59.176 55.000 0.00 0.00 36.04 4.35
95 96 0.824109 GCCCATCTGGTAAAAAGCCC 59.176 55.000 0.00 0.00 36.04 5.19
96 97 1.619704 GCCCATCTGGTAAAAAGCCCT 60.620 52.381 0.00 0.00 36.04 5.19
97 98 2.357777 GCCCATCTGGTAAAAAGCCCTA 60.358 50.000 0.00 0.00 36.04 3.53
98 99 3.880117 GCCCATCTGGTAAAAAGCCCTAA 60.880 47.826 0.00 0.00 36.04 2.69
99 100 4.349365 CCCATCTGGTAAAAAGCCCTAAA 58.651 43.478 0.00 0.00 0.00 1.85
100 101 4.775253 CCCATCTGGTAAAAAGCCCTAAAA 59.225 41.667 0.00 0.00 0.00 1.52
101 102 5.247337 CCCATCTGGTAAAAAGCCCTAAAAA 59.753 40.000 0.00 0.00 0.00 1.94
102 103 6.398095 CCATCTGGTAAAAAGCCCTAAAAAG 58.602 40.000 0.00 0.00 0.00 2.27
103 104 5.462530 TCTGGTAAAAAGCCCTAAAAAGC 57.537 39.130 0.00 0.00 0.00 3.51
104 105 4.282449 TCTGGTAAAAAGCCCTAAAAAGCC 59.718 41.667 0.00 0.00 0.00 4.35
105 106 3.325425 TGGTAAAAAGCCCTAAAAAGCCC 59.675 43.478 0.00 0.00 0.00 5.19
106 107 3.581332 GGTAAAAAGCCCTAAAAAGCCCT 59.419 43.478 0.00 0.00 0.00 5.19
107 108 4.041198 GGTAAAAAGCCCTAAAAAGCCCTT 59.959 41.667 0.00 0.00 0.00 3.95
108 109 5.246656 GGTAAAAAGCCCTAAAAAGCCCTTA 59.753 40.000 0.00 0.00 0.00 2.69
109 110 5.483685 AAAAAGCCCTAAAAAGCCCTTAG 57.516 39.130 0.00 0.00 0.00 2.18
110 111 2.828661 AGCCCTAAAAAGCCCTTAGG 57.171 50.000 8.49 8.49 43.49 2.69
141 142 2.125269 GGCCGCGCCTCTTTCTTA 60.125 61.111 0.00 0.00 46.69 2.10
142 143 1.743995 GGCCGCGCCTCTTTCTTAA 60.744 57.895 0.00 0.00 46.69 1.85
143 144 1.303091 GGCCGCGCCTCTTTCTTAAA 61.303 55.000 0.00 0.00 46.69 1.52
144 145 0.519961 GCCGCGCCTCTTTCTTAAAA 59.480 50.000 0.00 0.00 0.00 1.52
145 146 1.132453 GCCGCGCCTCTTTCTTAAAAT 59.868 47.619 0.00 0.00 0.00 1.82
146 147 2.785679 CCGCGCCTCTTTCTTAAAATG 58.214 47.619 0.00 0.00 0.00 2.32
147 148 2.177173 CGCGCCTCTTTCTTAAAATGC 58.823 47.619 0.00 0.00 0.00 3.56
148 149 2.530177 GCGCCTCTTTCTTAAAATGCC 58.470 47.619 0.00 0.00 0.00 4.40
149 150 2.094752 GCGCCTCTTTCTTAAAATGCCA 60.095 45.455 0.00 0.00 0.00 4.92
150 151 3.613910 GCGCCTCTTTCTTAAAATGCCAA 60.614 43.478 0.00 0.00 0.00 4.52
151 152 4.747810 CGCCTCTTTCTTAAAATGCCAAT 58.252 39.130 0.00 0.00 0.00 3.16
152 153 5.678616 GCGCCTCTTTCTTAAAATGCCAATA 60.679 40.000 0.00 0.00 0.00 1.90
153 154 6.507023 CGCCTCTTTCTTAAAATGCCAATAT 58.493 36.000 0.00 0.00 0.00 1.28
154 155 6.418819 CGCCTCTTTCTTAAAATGCCAATATG 59.581 38.462 0.00 0.00 0.00 1.78
155 156 7.267857 GCCTCTTTCTTAAAATGCCAATATGT 58.732 34.615 0.00 0.00 0.00 2.29
156 157 7.436376 GCCTCTTTCTTAAAATGCCAATATGTC 59.564 37.037 0.00 0.00 0.00 3.06
157 158 8.469200 CCTCTTTCTTAAAATGCCAATATGTCA 58.531 33.333 0.00 0.00 0.00 3.58
158 159 9.859427 CTCTTTCTTAAAATGCCAATATGTCAA 57.141 29.630 0.00 0.00 0.00 3.18
159 160 9.859427 TCTTTCTTAAAATGCCAATATGTCAAG 57.141 29.630 0.00 0.00 0.00 3.02
160 161 8.477984 TTTCTTAAAATGCCAATATGTCAAGC 57.522 30.769 0.00 0.00 0.00 4.01
161 162 6.572519 TCTTAAAATGCCAATATGTCAAGCC 58.427 36.000 0.00 0.00 0.00 4.35
162 163 3.825143 AAATGCCAATATGTCAAGCCC 57.175 42.857 0.00 0.00 0.00 5.19
163 164 2.457813 ATGCCAATATGTCAAGCCCA 57.542 45.000 0.00 0.00 0.00 5.36
164 165 2.228545 TGCCAATATGTCAAGCCCAA 57.771 45.000 0.00 0.00 0.00 4.12
165 166 2.101783 TGCCAATATGTCAAGCCCAAG 58.898 47.619 0.00 0.00 0.00 3.61
166 167 1.202452 GCCAATATGTCAAGCCCAAGC 60.202 52.381 0.00 0.00 40.32 4.01
167 168 1.410153 CCAATATGTCAAGCCCAAGCC 59.590 52.381 0.00 0.00 41.25 4.35
168 169 1.410153 CAATATGTCAAGCCCAAGCCC 59.590 52.381 0.00 0.00 41.25 5.19
169 170 0.630673 ATATGTCAAGCCCAAGCCCA 59.369 50.000 0.00 0.00 41.25 5.36
170 171 0.630673 TATGTCAAGCCCAAGCCCAT 59.369 50.000 0.00 0.00 41.25 4.00
171 172 0.685458 ATGTCAAGCCCAAGCCCATC 60.685 55.000 0.00 0.00 41.25 3.51
172 173 2.054453 GTCAAGCCCAAGCCCATCC 61.054 63.158 0.00 0.00 41.25 3.51
173 174 2.037687 CAAGCCCAAGCCCATCCA 59.962 61.111 0.00 0.00 41.25 3.41
174 175 2.056223 CAAGCCCAAGCCCATCCAG 61.056 63.158 0.00 0.00 41.25 3.86
175 176 2.240918 AAGCCCAAGCCCATCCAGA 61.241 57.895 0.00 0.00 41.25 3.86
176 177 2.440980 GCCCAAGCCCATCCAGAC 60.441 66.667 0.00 0.00 0.00 3.51
177 178 2.276740 CCCAAGCCCATCCAGACC 59.723 66.667 0.00 0.00 0.00 3.85
178 179 2.276740 CCAAGCCCATCCAGACCC 59.723 66.667 0.00 0.00 0.00 4.46
179 180 2.311854 CCAAGCCCATCCAGACCCT 61.312 63.158 0.00 0.00 0.00 4.34
180 181 0.988145 CCAAGCCCATCCAGACCCTA 60.988 60.000 0.00 0.00 0.00 3.53
181 182 0.181350 CAAGCCCATCCAGACCCTAC 59.819 60.000 0.00 0.00 0.00 3.18
182 183 0.044855 AAGCCCATCCAGACCCTACT 59.955 55.000 0.00 0.00 0.00 2.57
183 184 0.692419 AGCCCATCCAGACCCTACTG 60.692 60.000 0.00 0.00 37.61 2.74
184 185 0.691078 GCCCATCCAGACCCTACTGA 60.691 60.000 0.00 0.00 39.94 3.41
185 186 2.042301 GCCCATCCAGACCCTACTGAT 61.042 57.143 0.00 0.00 39.94 2.90
186 187 1.696336 CCCATCCAGACCCTACTGATG 59.304 57.143 0.00 0.00 39.94 3.07
187 188 1.696336 CCATCCAGACCCTACTGATGG 59.304 57.143 0.00 0.00 39.94 3.51
195 196 2.806945 CCCTACTGATGGGCTCAAAA 57.193 50.000 0.00 0.00 37.99 2.44
196 197 2.369394 CCCTACTGATGGGCTCAAAAC 58.631 52.381 0.00 0.00 37.99 2.43
197 198 2.025887 CCCTACTGATGGGCTCAAAACT 60.026 50.000 0.00 0.00 37.99 2.66
198 199 3.274288 CCTACTGATGGGCTCAAAACTC 58.726 50.000 0.00 0.00 32.14 3.01
199 200 2.957402 ACTGATGGGCTCAAAACTCA 57.043 45.000 0.00 0.00 32.14 3.41
200 201 2.787994 ACTGATGGGCTCAAAACTCAG 58.212 47.619 12.42 12.42 34.30 3.35
201 202 2.089980 CTGATGGGCTCAAAACTCAGG 58.910 52.381 6.98 0.00 32.14 3.86
202 203 0.813821 GATGGGCTCAAAACTCAGGC 59.186 55.000 0.00 0.00 34.44 4.85
204 205 3.686760 GGCTCAAAACTCAGGCCC 58.313 61.111 0.00 0.00 37.12 5.80
205 206 1.228552 GGCTCAAAACTCAGGCCCA 60.229 57.895 0.00 0.00 37.12 5.36
206 207 0.827507 GGCTCAAAACTCAGGCCCAA 60.828 55.000 0.00 0.00 37.12 4.12
207 208 1.039856 GCTCAAAACTCAGGCCCAAA 58.960 50.000 0.00 0.00 0.00 3.28
208 209 1.269778 GCTCAAAACTCAGGCCCAAAC 60.270 52.381 0.00 0.00 0.00 2.93
209 210 1.341209 CTCAAAACTCAGGCCCAAACC 59.659 52.381 0.00 0.00 0.00 3.27
210 211 0.392706 CAAAACTCAGGCCCAAACCC 59.607 55.000 0.00 0.00 0.00 4.11
211 212 1.112916 AAAACTCAGGCCCAAACCCG 61.113 55.000 0.00 0.00 0.00 5.28
212 213 2.994643 AAACTCAGGCCCAAACCCGG 62.995 60.000 0.00 0.00 0.00 5.73
252 253 2.278332 GCCTAGGCCCTGGATTTTAG 57.722 55.000 24.19 0.33 34.56 1.85
253 254 1.202940 GCCTAGGCCCTGGATTTTAGG 60.203 57.143 24.19 10.45 34.56 2.69
258 259 4.579127 CCTGGATTTTAGGGCCGG 57.421 61.111 0.00 0.00 0.00 6.13
259 260 1.152756 CCTGGATTTTAGGGCCGGG 60.153 63.158 2.18 0.00 41.55 5.73
260 261 1.828224 CTGGATTTTAGGGCCGGGC 60.828 63.158 22.00 22.00 0.00 6.13
277 278 3.470888 CCTGGGTAGGCCGACAGG 61.471 72.222 18.37 18.70 43.87 4.00
278 279 3.470888 CTGGGTAGGCCGACAGGG 61.471 72.222 18.37 2.87 38.20 4.45
304 305 2.611225 CTGAGATGGCCAGGACTAAC 57.389 55.000 13.05 0.70 0.00 2.34
305 306 2.114616 CTGAGATGGCCAGGACTAACT 58.885 52.381 13.05 1.40 0.00 2.24
306 307 2.102252 CTGAGATGGCCAGGACTAACTC 59.898 54.545 13.05 11.06 0.00 3.01
307 308 1.067821 GAGATGGCCAGGACTAACTCG 59.932 57.143 13.05 0.00 0.00 4.18
308 309 0.105039 GATGGCCAGGACTAACTCGG 59.895 60.000 13.05 0.00 0.00 4.63
309 310 1.972660 ATGGCCAGGACTAACTCGGC 61.973 60.000 13.05 0.00 42.21 5.54
320 321 3.456317 ACTCGGCGGTGAGAGTTT 58.544 55.556 7.21 0.00 44.46 2.66
355 356 9.478768 TGATACGTTCAATAGTAACAACTTTCA 57.521 29.630 0.00 0.00 0.00 2.69
401 402 5.682943 TGTACTAGAATTTTGCACACCAC 57.317 39.130 0.00 0.00 0.00 4.16
419 420 4.703093 CACCACCCGGTTCATAAATAAGTT 59.297 41.667 0.00 0.00 46.31 2.66
437 438 4.893424 AGTTATGTTTTGACACGCTTGT 57.107 36.364 0.00 0.00 39.32 3.16
438 439 5.994887 AGTTATGTTTTGACACGCTTGTA 57.005 34.783 0.00 0.00 35.47 2.41
439 440 5.985781 AGTTATGTTTTGACACGCTTGTAG 58.014 37.500 0.00 0.00 35.47 2.74
440 441 5.526111 AGTTATGTTTTGACACGCTTGTAGT 59.474 36.000 0.00 0.00 35.47 2.73
441 442 6.702723 AGTTATGTTTTGACACGCTTGTAGTA 59.297 34.615 0.00 0.00 35.47 1.82
442 443 4.782252 TGTTTTGACACGCTTGTAGTAC 57.218 40.909 0.00 0.00 35.47 2.73
443 444 3.243410 TGTTTTGACACGCTTGTAGTACG 59.757 43.478 0.00 0.00 35.47 3.67
444 445 2.780065 TTGACACGCTTGTAGTACGT 57.220 45.000 0.00 0.00 41.45 3.57
448 449 3.436359 TGACACGCTTGTAGTACGTCATA 59.564 43.478 0.00 0.00 38.09 2.15
449 450 3.751621 ACACGCTTGTAGTACGTCATAC 58.248 45.455 0.00 0.00 38.09 2.39
451 452 4.083110 ACACGCTTGTAGTACGTCATACTT 60.083 41.667 0.00 0.00 41.71 2.24
522 531 5.003160 CACACCTATGGATTTGTCTCAACA 58.997 41.667 0.00 0.00 0.00 3.33
533 542 7.012327 TGGATTTGTCTCAACAGTTGTTTCTAG 59.988 37.037 13.14 3.11 36.57 2.43
534 543 7.012421 GGATTTGTCTCAACAGTTGTTTCTAGT 59.988 37.037 13.14 0.00 36.57 2.57
535 544 6.662414 TTGTCTCAACAGTTGTTTCTAGTG 57.338 37.500 13.14 0.00 36.57 2.74
538 547 6.978659 TGTCTCAACAGTTGTTTCTAGTGTAG 59.021 38.462 13.14 0.00 35.83 2.74
539 548 6.979238 GTCTCAACAGTTGTTTCTAGTGTAGT 59.021 38.462 13.14 0.00 35.83 2.73
540 549 6.978659 TCTCAACAGTTGTTTCTAGTGTAGTG 59.021 38.462 13.14 0.00 35.83 2.74
541 550 6.636705 TCAACAGTTGTTTCTAGTGTAGTGT 58.363 36.000 13.14 0.00 35.83 3.55
543 552 6.216801 ACAGTTGTTTCTAGTGTAGTGTCA 57.783 37.500 0.00 0.00 0.00 3.58
544 553 6.636705 ACAGTTGTTTCTAGTGTAGTGTCAA 58.363 36.000 0.00 0.00 0.00 3.18
545 554 7.101054 ACAGTTGTTTCTAGTGTAGTGTCAAA 58.899 34.615 0.00 0.00 0.00 2.69
546 555 7.604927 ACAGTTGTTTCTAGTGTAGTGTCAAAA 59.395 33.333 0.00 0.00 0.00 2.44
547 556 8.447833 CAGTTGTTTCTAGTGTAGTGTCAAAAA 58.552 33.333 0.00 0.00 0.00 1.94
570 579 8.964420 AAAACGTCTTACATTATGAAATGGTG 57.036 30.769 0.00 0.00 45.72 4.17
571 580 6.677781 ACGTCTTACATTATGAAATGGTGG 57.322 37.500 0.00 0.00 45.72 4.61
572 581 5.588648 ACGTCTTACATTATGAAATGGTGGG 59.411 40.000 0.00 0.00 45.72 4.61
573 582 5.820423 CGTCTTACATTATGAAATGGTGGGA 59.180 40.000 0.00 0.00 45.72 4.37
574 583 6.017934 CGTCTTACATTATGAAATGGTGGGAG 60.018 42.308 0.00 0.00 45.72 4.30
575 584 6.828785 GTCTTACATTATGAAATGGTGGGAGT 59.171 38.462 0.00 0.00 45.72 3.85
576 585 7.990886 GTCTTACATTATGAAATGGTGGGAGTA 59.009 37.037 0.00 0.00 45.72 2.59
577 586 8.210946 TCTTACATTATGAAATGGTGGGAGTAG 58.789 37.037 0.00 0.00 45.72 2.57
578 587 6.327386 ACATTATGAAATGGTGGGAGTAGT 57.673 37.500 0.00 0.00 45.72 2.73
579 588 7.446106 ACATTATGAAATGGTGGGAGTAGTA 57.554 36.000 0.00 0.00 45.72 1.82
580 589 8.045720 ACATTATGAAATGGTGGGAGTAGTAT 57.954 34.615 0.00 0.00 45.72 2.12
581 590 8.502738 ACATTATGAAATGGTGGGAGTAGTATT 58.497 33.333 0.00 0.00 45.72 1.89
586 595 8.555896 TGAAATGGTGGGAGTAGTATTATACA 57.444 34.615 5.11 0.00 0.00 2.29
587 596 8.994500 TGAAATGGTGGGAGTAGTATTATACAA 58.006 33.333 5.11 0.00 0.00 2.41
588 597 9.269453 GAAATGGTGGGAGTAGTATTATACAAC 57.731 37.037 5.11 0.00 0.00 3.32
589 598 6.736110 TGGTGGGAGTAGTATTATACAACC 57.264 41.667 5.11 2.70 0.00 3.77
590 599 6.446451 TGGTGGGAGTAGTATTATACAACCT 58.554 40.000 5.11 0.00 0.00 3.50
591 600 6.904654 TGGTGGGAGTAGTATTATACAACCTT 59.095 38.462 5.11 0.00 0.00 3.50
592 601 7.403813 TGGTGGGAGTAGTATTATACAACCTTT 59.596 37.037 5.11 0.00 0.00 3.11
593 602 8.270030 GGTGGGAGTAGTATTATACAACCTTTT 58.730 37.037 5.11 0.00 0.00 2.27
594 603 9.676861 GTGGGAGTAGTATTATACAACCTTTTT 57.323 33.333 5.11 0.00 0.00 1.94
628 637 8.943909 AATACACTGCAATAGGAAGTTAGTAC 57.056 34.615 0.00 0.00 0.00 2.73
629 638 6.607004 ACACTGCAATAGGAAGTTAGTACT 57.393 37.500 0.00 0.00 35.68 2.73
630 639 6.631962 ACACTGCAATAGGAAGTTAGTACTC 58.368 40.000 0.00 0.00 31.99 2.59
631 640 6.043411 CACTGCAATAGGAAGTTAGTACTCC 58.957 44.000 0.00 0.00 31.99 3.85
632 641 5.128991 ACTGCAATAGGAAGTTAGTACTCCC 59.871 44.000 0.00 0.00 31.99 4.30
633 642 5.278061 TGCAATAGGAAGTTAGTACTCCCT 58.722 41.667 0.00 2.46 42.54 4.20
634 643 5.363005 TGCAATAGGAAGTTAGTACTCCCTC 59.637 44.000 0.00 0.00 33.00 4.30
635 644 5.221481 GCAATAGGAAGTTAGTACTCCCTCC 60.221 48.000 0.00 1.79 33.00 4.30
636 645 3.015675 AGGAAGTTAGTACTCCCTCCG 57.984 52.381 0.00 0.00 33.00 4.63
637 646 2.311243 AGGAAGTTAGTACTCCCTCCGT 59.689 50.000 0.00 0.00 33.00 4.69
638 647 3.525199 AGGAAGTTAGTACTCCCTCCGTA 59.475 47.826 0.00 0.00 33.00 4.02
639 648 4.018050 AGGAAGTTAGTACTCCCTCCGTAA 60.018 45.833 0.00 0.00 33.00 3.18
640 649 4.706962 GGAAGTTAGTACTCCCTCCGTAAA 59.293 45.833 0.00 0.00 31.99 2.01
641 650 5.163571 GGAAGTTAGTACTCCCTCCGTAAAG 60.164 48.000 0.00 0.00 31.99 1.85
642 651 5.184892 AGTTAGTACTCCCTCCGTAAAGA 57.815 43.478 0.00 0.00 0.00 2.52
643 652 5.574188 AGTTAGTACTCCCTCCGTAAAGAA 58.426 41.667 0.00 0.00 0.00 2.52
644 653 6.012745 AGTTAGTACTCCCTCCGTAAAGAAA 58.987 40.000 0.00 0.00 0.00 2.52
645 654 6.666980 AGTTAGTACTCCCTCCGTAAAGAAAT 59.333 38.462 0.00 0.00 0.00 2.17
646 655 7.836183 AGTTAGTACTCCCTCCGTAAAGAAATA 59.164 37.037 0.00 0.00 0.00 1.40
647 656 8.637099 GTTAGTACTCCCTCCGTAAAGAAATAT 58.363 37.037 0.00 0.00 0.00 1.28
648 657 9.866655 TTAGTACTCCCTCCGTAAAGAAATATA 57.133 33.333 0.00 0.00 0.00 0.86
649 658 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
650 659 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
651 660 7.672122 ACTCCCTCCGTAAAGAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
652 661 7.498443 ACTCCCTCCGTAAAGAAATATAAGTG 58.502 38.462 0.00 0.00 0.00 3.16
653 662 6.285990 TCCCTCCGTAAAGAAATATAAGTGC 58.714 40.000 0.00 0.00 0.00 4.40
654 663 5.176958 CCCTCCGTAAAGAAATATAAGTGCG 59.823 44.000 0.00 0.00 0.00 5.34
655 664 5.751990 CCTCCGTAAAGAAATATAAGTGCGT 59.248 40.000 0.00 0.00 0.00 5.24
656 665 6.257193 CCTCCGTAAAGAAATATAAGTGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
657 666 7.201582 CCTCCGTAAAGAAATATAAGTGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
658 667 8.700722 TCCGTAAAGAAATATAAGTGCGTTTA 57.299 30.769 0.00 0.00 0.00 2.01
659 668 8.810427 TCCGTAAAGAAATATAAGTGCGTTTAG 58.190 33.333 0.00 0.00 0.00 1.85
660 669 8.810427 CCGTAAAGAAATATAAGTGCGTTTAGA 58.190 33.333 0.00 0.00 0.00 2.10
665 674 9.601217 AAGAAATATAAGTGCGTTTAGATCACT 57.399 29.630 0.00 0.00 42.28 3.41
666 675 9.250624 AGAAATATAAGTGCGTTTAGATCACTC 57.749 33.333 0.00 0.00 39.86 3.51
667 676 9.250624 GAAATATAAGTGCGTTTAGATCACTCT 57.749 33.333 0.00 0.00 39.86 3.24
668 677 9.601217 AAATATAAGTGCGTTTAGATCACTCTT 57.399 29.630 0.00 0.00 39.86 2.85
674 683 9.601217 AAGTGCGTTTAGATCACTCTTATATTT 57.399 29.630 0.00 0.00 39.86 1.40
675 684 9.250624 AGTGCGTTTAGATCACTCTTATATTTC 57.749 33.333 0.00 0.00 36.42 2.17
676 685 9.250624 GTGCGTTTAGATCACTCTTATATTTCT 57.749 33.333 0.00 0.00 32.66 2.52
677 686 9.817809 TGCGTTTAGATCACTCTTATATTTCTT 57.182 29.630 0.00 0.00 32.66 2.52
686 695 9.838339 ATCACTCTTATATTTCTTTACAGTGGG 57.162 33.333 0.00 0.00 31.55 4.61
725 734 5.946377 ACCTTATCAATCTGAAAAGGTGGTC 59.054 40.000 4.34 0.00 0.00 4.02
737 892 2.094762 AGGTGGTCTATTTCGTGCAC 57.905 50.000 6.82 6.82 0.00 4.57
974 1133 6.543736 GCTGCAACAAGACCTAATTAACTAC 58.456 40.000 0.00 0.00 0.00 2.73
993 1161 1.211703 ACCCAGTTCATCACACACACA 59.788 47.619 0.00 0.00 0.00 3.72
997 1165 3.120041 CAGTTCATCACACACACACGTA 58.880 45.455 0.00 0.00 0.00 3.57
1379 1558 4.687215 TGAGGCTGTGGTCGCTGC 62.687 66.667 0.00 5.08 0.00 5.25
2196 2375 2.998097 CCATTCTTCCTGGGGCGA 59.002 61.111 0.00 0.00 0.00 5.54
2454 2633 0.915364 GGGAGTGGCTTGAGGAGAAT 59.085 55.000 0.00 0.00 0.00 2.40
2588 2786 0.976641 TTCTGCGGACCACTTCAGAT 59.023 50.000 0.00 0.00 35.74 2.90
2633 4181 3.544684 TGGATGTGATATTGTGAGGTGC 58.455 45.455 0.00 0.00 0.00 5.01
2698 4251 7.051000 AGTGGATAAATAAAGAGAAGCTCACC 58.949 38.462 0.00 0.00 32.06 4.02
2722 4305 5.425630 GGAGGATGTTCAAGGTATTACGTT 58.574 41.667 0.00 0.00 0.00 3.99
2770 4353 3.408157 TGTAAGGCCCTCCACATAGTA 57.592 47.619 0.00 0.00 33.74 1.82
2773 4356 3.864789 AAGGCCCTCCACATAGTAATG 57.135 47.619 0.00 0.00 39.17 1.90
2779 4362 3.971305 CCCTCCACATAGTAATGGTACCA 59.029 47.826 18.99 18.99 37.43 3.25
2809 4392 9.093970 GACAATTTTTGTATAGGTATTTTGGCC 57.906 33.333 0.00 0.00 45.52 5.36
2814 4397 5.818678 TGTATAGGTATTTTGGCCGATCT 57.181 39.130 0.00 0.00 0.00 2.75
3067 4739 5.561339 CGTGTTTGTTTAACCTATGTCCACC 60.561 44.000 0.00 0.00 35.81 4.61
3072 4744 6.436738 TGTTTAACCTATGTCCACCAAGTA 57.563 37.500 0.00 0.00 0.00 2.24
3084 4759 8.880878 ATGTCCACCAAGTATTTTGTAAAAAC 57.119 30.769 0.00 0.00 0.00 2.43
3095 4770 3.907894 TTGTAAAAACCCGCTGCTAAG 57.092 42.857 0.00 0.00 0.00 2.18
3171 4853 4.202524 TGGTCCATGCAAGGTAAAACTAGT 60.203 41.667 8.03 0.00 0.00 2.57
3172 4854 4.156008 GGTCCATGCAAGGTAAAACTAGTG 59.844 45.833 8.03 0.00 0.00 2.74
3173 4855 3.756434 TCCATGCAAGGTAAAACTAGTGC 59.244 43.478 8.03 0.00 0.00 4.40
3174 4856 3.758554 CCATGCAAGGTAAAACTAGTGCT 59.241 43.478 0.00 0.00 33.19 4.40
3175 4857 4.142600 CCATGCAAGGTAAAACTAGTGCTC 60.143 45.833 0.00 0.00 33.19 4.26
3176 4858 3.408634 TGCAAGGTAAAACTAGTGCTCC 58.591 45.455 0.00 0.00 33.19 4.70
3177 4859 2.747989 GCAAGGTAAAACTAGTGCTCCC 59.252 50.000 0.00 0.00 0.00 4.30
3178 4860 3.344515 CAAGGTAAAACTAGTGCTCCCC 58.655 50.000 0.00 0.00 0.00 4.81
3179 4861 1.914108 AGGTAAAACTAGTGCTCCCCC 59.086 52.381 0.00 0.00 0.00 5.40
3180 4862 1.406477 GGTAAAACTAGTGCTCCCCCG 60.406 57.143 0.00 0.00 0.00 5.73
3181 4863 0.251073 TAAAACTAGTGCTCCCCCGC 59.749 55.000 0.00 0.00 0.00 6.13
3182 4864 2.798148 AAAACTAGTGCTCCCCCGCG 62.798 60.000 0.00 0.00 0.00 6.46
3184 4866 4.208686 CTAGTGCTCCCCCGCGTC 62.209 72.222 4.92 0.00 0.00 5.19
3223 4905 2.510918 GGAACCCTAACTCGCGCC 60.511 66.667 0.00 0.00 0.00 6.53
3224 4906 2.263540 GAACCCTAACTCGCGCCA 59.736 61.111 0.00 0.00 0.00 5.69
3225 4907 2.047560 AACCCTAACTCGCGCCAC 60.048 61.111 0.00 0.00 0.00 5.01
3226 4908 3.927163 AACCCTAACTCGCGCCACG 62.927 63.158 0.00 0.00 45.62 4.94
3330 5012 4.862823 GGGGCCCCTCGACTAGCT 62.863 72.222 35.49 0.00 0.00 3.32
3331 5013 2.764547 GGGCCCCTCGACTAGCTT 60.765 66.667 12.23 0.00 0.00 3.74
3332 5014 2.798364 GGGCCCCTCGACTAGCTTC 61.798 68.421 12.23 0.00 0.00 3.86
3333 5015 2.413765 GCCCCTCGACTAGCTTCG 59.586 66.667 1.24 1.24 40.53 3.79
3334 5016 3.121019 CCCCTCGACTAGCTTCGG 58.879 66.667 7.90 0.00 39.58 4.30
3335 5017 1.753463 CCCCTCGACTAGCTTCGGT 60.753 63.158 7.90 0.00 39.58 4.69
3336 5018 1.726533 CCCCTCGACTAGCTTCGGTC 61.727 65.000 7.90 6.12 39.58 4.79
3337 5019 0.748729 CCCTCGACTAGCTTCGGTCT 60.749 60.000 7.90 0.00 39.58 3.85
3338 5020 0.658897 CCTCGACTAGCTTCGGTCTC 59.341 60.000 7.90 0.00 39.58 3.36
3339 5021 1.370609 CTCGACTAGCTTCGGTCTCA 58.629 55.000 7.90 0.00 39.58 3.27
3340 5022 1.329292 CTCGACTAGCTTCGGTCTCAG 59.671 57.143 7.90 2.97 39.58 3.35
3341 5023 0.248296 CGACTAGCTTCGGTCTCAGC 60.248 60.000 0.00 0.00 35.26 4.26
3342 5024 0.101579 GACTAGCTTCGGTCTCAGCC 59.898 60.000 0.00 0.00 36.62 4.85
3343 5025 1.324005 ACTAGCTTCGGTCTCAGCCC 61.324 60.000 0.00 0.00 36.62 5.19
3344 5026 2.022240 CTAGCTTCGGTCTCAGCCCC 62.022 65.000 0.00 0.00 36.62 5.80
3345 5027 2.516048 TAGCTTCGGTCTCAGCCCCT 62.516 60.000 0.00 0.00 36.62 4.79
3346 5028 2.896443 CTTCGGTCTCAGCCCCTC 59.104 66.667 0.00 0.00 0.00 4.30
3347 5029 2.683933 TTCGGTCTCAGCCCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
3348 5030 3.239627 TTCGGTCTCAGCCCCTCCT 62.240 63.158 0.00 0.00 0.00 3.69
3349 5031 3.151022 CGGTCTCAGCCCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
3350 5032 2.766229 GGTCTCAGCCCCTCCTCC 60.766 72.222 0.00 0.00 0.00 4.30
3351 5033 2.766229 GTCTCAGCCCCTCCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
3352 5034 4.095400 TCTCAGCCCCTCCTCCCC 62.095 72.222 0.00 0.00 0.00 4.81
3495 5177 4.760047 CTCCTCCGCCCCAACGTG 62.760 72.222 0.00 0.00 0.00 4.49
3497 5179 4.636435 CCTCCGCCCCAACGTGTT 62.636 66.667 0.00 0.00 0.00 3.32
3498 5180 3.047877 CTCCGCCCCAACGTGTTC 61.048 66.667 0.00 0.00 0.00 3.18
3499 5181 4.629523 TCCGCCCCAACGTGTTCC 62.630 66.667 0.00 0.00 0.00 3.62
3502 5184 4.941309 GCCCCAACGTGTTCCCGT 62.941 66.667 0.00 0.00 44.23 5.28
3503 5185 2.975799 CCCCAACGTGTTCCCGTG 60.976 66.667 0.00 0.00 41.65 4.94
3504 5186 3.656045 CCCAACGTGTTCCCGTGC 61.656 66.667 0.00 0.00 41.65 5.34
3505 5187 3.656045 CCAACGTGTTCCCGTGCC 61.656 66.667 0.00 0.00 41.65 5.01
3506 5188 2.897846 CAACGTGTTCCCGTGCCA 60.898 61.111 0.00 0.00 41.65 4.92
3507 5189 2.590575 AACGTGTTCCCGTGCCAG 60.591 61.111 0.00 0.00 41.65 4.85
3508 5190 3.096633 AACGTGTTCCCGTGCCAGA 62.097 57.895 0.00 0.00 41.65 3.86
3509 5191 2.047274 CGTGTTCCCGTGCCAGAT 60.047 61.111 0.00 0.00 0.00 2.90
3510 5192 2.100631 CGTGTTCCCGTGCCAGATC 61.101 63.158 0.00 0.00 0.00 2.75
3511 5193 1.296715 GTGTTCCCGTGCCAGATCT 59.703 57.895 0.00 0.00 0.00 2.75
3512 5194 1.021390 GTGTTCCCGTGCCAGATCTG 61.021 60.000 16.24 16.24 0.00 2.90
3513 5195 1.191489 TGTTCCCGTGCCAGATCTGA 61.191 55.000 24.62 1.64 0.00 3.27
3514 5196 0.741221 GTTCCCGTGCCAGATCTGAC 60.741 60.000 24.62 13.69 0.00 3.51
3515 5197 2.202797 CCCGTGCCAGATCTGACG 60.203 66.667 24.62 23.80 32.69 4.35
3516 5198 2.887568 CCGTGCCAGATCTGACGC 60.888 66.667 24.62 18.11 31.90 5.19
3517 5199 2.182791 CGTGCCAGATCTGACGCT 59.817 61.111 24.62 0.00 0.00 5.07
3518 5200 1.875813 CGTGCCAGATCTGACGCTC 60.876 63.158 24.62 17.72 0.00 5.03
3519 5201 1.875813 GTGCCAGATCTGACGCTCG 60.876 63.158 24.62 7.15 0.00 5.03
3520 5202 2.343426 TGCCAGATCTGACGCTCGT 61.343 57.895 24.62 0.00 0.00 4.18
3521 5203 1.587613 GCCAGATCTGACGCTCGTC 60.588 63.158 24.62 14.77 44.77 4.20
3532 5214 3.685592 GCTCGTCAGCGTGATCTG 58.314 61.111 0.00 0.00 35.39 2.90
3533 5215 2.512301 GCTCGTCAGCGTGATCTGC 61.512 63.158 2.71 2.71 35.39 4.26
3534 5216 1.875813 CTCGTCAGCGTGATCTGCC 60.876 63.158 6.86 0.00 39.49 4.85
3535 5217 3.250323 CGTCAGCGTGATCTGCCG 61.250 66.667 6.86 1.94 34.19 5.69
3536 5218 2.125912 GTCAGCGTGATCTGCCGT 60.126 61.111 6.86 0.00 34.19 5.68
3537 5219 1.738099 GTCAGCGTGATCTGCCGTT 60.738 57.895 6.86 0.00 34.19 4.44
3538 5220 1.737735 TCAGCGTGATCTGCCGTTG 60.738 57.895 6.86 8.25 36.75 4.10
3539 5221 1.737735 CAGCGTGATCTGCCGTTGA 60.738 57.895 9.85 0.00 37.46 3.18
3540 5222 1.086067 CAGCGTGATCTGCCGTTGAT 61.086 55.000 9.85 0.00 37.46 2.57
3541 5223 1.086067 AGCGTGATCTGCCGTTGATG 61.086 55.000 6.86 0.00 0.00 3.07
3542 5224 1.083806 GCGTGATCTGCCGTTGATGA 61.084 55.000 0.00 0.00 0.00 2.92
3543 5225 0.647410 CGTGATCTGCCGTTGATGAC 59.353 55.000 0.00 0.00 0.00 3.06
3551 5233 3.186047 CGTTGATGACGCCGGACC 61.186 66.667 5.05 0.00 45.86 4.46
3552 5234 2.818274 GTTGATGACGCCGGACCC 60.818 66.667 5.05 0.00 0.00 4.46
3553 5235 4.090588 TTGATGACGCCGGACCCC 62.091 66.667 5.05 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.752658 GGTTTTCTGCTGTGGGCTTT 59.247 50.000 0.00 0.00 42.39 3.51
1 2 1.455383 CGGTTTTCTGCTGTGGGCTT 61.455 55.000 0.00 0.00 42.39 4.35
2 3 1.898574 CGGTTTTCTGCTGTGGGCT 60.899 57.895 0.00 0.00 42.39 5.19
3 4 1.856265 CTCGGTTTTCTGCTGTGGGC 61.856 60.000 0.00 0.00 42.22 5.36
4 5 1.237285 CCTCGGTTTTCTGCTGTGGG 61.237 60.000 0.00 0.00 0.00 4.61
5 6 1.856265 GCCTCGGTTTTCTGCTGTGG 61.856 60.000 0.00 0.00 0.00 4.17
6 7 1.576421 GCCTCGGTTTTCTGCTGTG 59.424 57.895 0.00 0.00 0.00 3.66
7 8 1.600916 GGCCTCGGTTTTCTGCTGT 60.601 57.895 0.00 0.00 0.00 4.40
8 9 0.036388 TAGGCCTCGGTTTTCTGCTG 60.036 55.000 9.68 0.00 0.00 4.41
9 10 0.250513 CTAGGCCTCGGTTTTCTGCT 59.749 55.000 9.68 0.00 0.00 4.24
10 11 0.744771 CCTAGGCCTCGGTTTTCTGC 60.745 60.000 9.68 0.00 0.00 4.26
11 12 0.744771 GCCTAGGCCTCGGTTTTCTG 60.745 60.000 24.19 0.00 34.56 3.02
12 13 1.602771 GCCTAGGCCTCGGTTTTCT 59.397 57.895 24.19 0.00 34.56 2.52
13 14 4.220413 GCCTAGGCCTCGGTTTTC 57.780 61.111 24.19 4.11 34.56 2.29
23 24 2.366972 TCTTGGGAGGGCCTAGGC 60.367 66.667 26.55 26.55 41.06 3.93
24 25 2.073101 GGTCTTGGGAGGGCCTAGG 61.073 68.421 5.73 3.67 0.00 3.02
25 26 0.264955 TAGGTCTTGGGAGGGCCTAG 59.735 60.000 5.73 0.00 33.15 3.02
26 27 0.949582 ATAGGTCTTGGGAGGGCCTA 59.050 55.000 5.73 0.00 36.29 3.93
27 28 0.400670 GATAGGTCTTGGGAGGGCCT 60.401 60.000 5.25 5.25 34.59 5.19
28 29 0.694444 TGATAGGTCTTGGGAGGGCC 60.694 60.000 0.00 0.00 0.00 5.80
29 30 0.470341 GTGATAGGTCTTGGGAGGGC 59.530 60.000 0.00 0.00 0.00 5.19
30 31 2.182516 AGTGATAGGTCTTGGGAGGG 57.817 55.000 0.00 0.00 0.00 4.30
31 32 3.235200 CCTAGTGATAGGTCTTGGGAGG 58.765 54.545 0.00 0.00 32.60 4.30
32 33 2.630580 GCCTAGTGATAGGTCTTGGGAG 59.369 54.545 3.40 0.00 39.42 4.30
33 34 2.679082 GCCTAGTGATAGGTCTTGGGA 58.321 52.381 3.40 0.00 39.42 4.37
34 35 1.694696 GGCCTAGTGATAGGTCTTGGG 59.305 57.143 0.00 0.00 38.75 4.12
39 40 5.363005 TGAAAAGTAGGCCTAGTGATAGGTC 59.637 44.000 21.10 11.78 42.04 3.85
40 41 5.278061 TGAAAAGTAGGCCTAGTGATAGGT 58.722 41.667 21.10 0.87 39.42 3.08
41 42 5.871396 TGAAAAGTAGGCCTAGTGATAGG 57.129 43.478 21.10 0.00 40.20 2.57
58 59 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
59 60 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
70 71 4.815973 TACCAGATGGGCCGGGCT 62.816 66.667 28.80 9.11 42.05 5.19
71 72 2.847366 TTTTACCAGATGGGCCGGGC 62.847 60.000 22.00 22.00 42.05 6.13
72 73 0.323908 TTTTTACCAGATGGGCCGGG 60.324 55.000 2.18 0.00 42.05 5.73
73 74 1.102978 CTTTTTACCAGATGGGCCGG 58.897 55.000 0.00 0.00 42.05 6.13
74 75 0.455815 GCTTTTTACCAGATGGGCCG 59.544 55.000 3.48 0.00 42.05 6.13
75 76 0.824109 GGCTTTTTACCAGATGGGCC 59.176 55.000 3.48 0.00 42.05 5.80
76 77 0.824109 GGGCTTTTTACCAGATGGGC 59.176 55.000 3.48 0.00 42.05 5.36
77 78 2.532250 AGGGCTTTTTACCAGATGGG 57.468 50.000 3.48 0.00 44.81 4.00
78 79 5.993748 TTTTAGGGCTTTTTACCAGATGG 57.006 39.130 0.00 0.00 42.17 3.51
79 80 5.869344 GCTTTTTAGGGCTTTTTACCAGATG 59.131 40.000 0.00 0.00 0.00 2.90
80 81 5.046591 GGCTTTTTAGGGCTTTTTACCAGAT 60.047 40.000 0.00 0.00 0.00 2.90
81 82 4.282449 GGCTTTTTAGGGCTTTTTACCAGA 59.718 41.667 0.00 0.00 0.00 3.86
82 83 4.562757 GGGCTTTTTAGGGCTTTTTACCAG 60.563 45.833 0.00 0.00 0.00 4.00
83 84 3.325425 GGGCTTTTTAGGGCTTTTTACCA 59.675 43.478 0.00 0.00 0.00 3.25
84 85 3.581332 AGGGCTTTTTAGGGCTTTTTACC 59.419 43.478 0.00 0.00 0.00 2.85
85 86 4.884668 AGGGCTTTTTAGGGCTTTTTAC 57.115 40.909 0.00 0.00 0.00 2.01
86 87 5.482526 CCTAAGGGCTTTTTAGGGCTTTTTA 59.517 40.000 12.28 0.00 42.20 1.52
87 88 4.286032 CCTAAGGGCTTTTTAGGGCTTTTT 59.714 41.667 12.28 0.00 42.20 1.94
88 89 3.838317 CCTAAGGGCTTTTTAGGGCTTTT 59.162 43.478 12.28 0.00 42.20 2.27
89 90 3.441101 CCTAAGGGCTTTTTAGGGCTTT 58.559 45.455 12.28 0.00 42.20 3.51
90 91 3.101643 CCTAAGGGCTTTTTAGGGCTT 57.898 47.619 12.28 0.00 42.20 4.35
91 92 2.828661 CCTAAGGGCTTTTTAGGGCT 57.171 50.000 12.28 0.00 42.20 5.19
125 126 0.519961 TTTTAAGAAAGAGGCGCGGC 59.480 50.000 27.06 27.06 0.00 6.53
126 127 2.785679 CATTTTAAGAAAGAGGCGCGG 58.214 47.619 8.83 0.00 0.00 6.46
127 128 2.177173 GCATTTTAAGAAAGAGGCGCG 58.823 47.619 0.00 0.00 0.00 6.86
128 129 2.094752 TGGCATTTTAAGAAAGAGGCGC 60.095 45.455 0.00 0.00 34.27 6.53
129 130 3.848272 TGGCATTTTAAGAAAGAGGCG 57.152 42.857 0.00 0.00 34.27 5.52
130 131 7.267857 ACATATTGGCATTTTAAGAAAGAGGC 58.732 34.615 0.00 0.00 33.06 4.70
131 132 8.469200 TGACATATTGGCATTTTAAGAAAGAGG 58.531 33.333 0.00 0.00 24.43 3.69
132 133 9.859427 TTGACATATTGGCATTTTAAGAAAGAG 57.141 29.630 0.00 0.00 33.90 2.85
133 134 9.859427 CTTGACATATTGGCATTTTAAGAAAGA 57.141 29.630 0.00 0.00 33.90 2.52
134 135 8.598075 GCTTGACATATTGGCATTTTAAGAAAG 58.402 33.333 0.00 0.00 33.90 2.62
135 136 7.548780 GGCTTGACATATTGGCATTTTAAGAAA 59.451 33.333 0.00 0.00 33.90 2.52
136 137 7.041107 GGCTTGACATATTGGCATTTTAAGAA 58.959 34.615 0.00 0.00 33.90 2.52
137 138 6.406849 GGGCTTGACATATTGGCATTTTAAGA 60.407 38.462 0.00 0.00 33.90 2.10
138 139 5.754890 GGGCTTGACATATTGGCATTTTAAG 59.245 40.000 0.00 0.00 33.90 1.85
139 140 5.188555 TGGGCTTGACATATTGGCATTTTAA 59.811 36.000 0.00 0.00 33.90 1.52
140 141 4.713814 TGGGCTTGACATATTGGCATTTTA 59.286 37.500 0.00 0.00 33.90 1.52
141 142 3.518705 TGGGCTTGACATATTGGCATTTT 59.481 39.130 0.00 0.00 33.90 1.82
142 143 3.106054 TGGGCTTGACATATTGGCATTT 58.894 40.909 0.00 0.00 33.90 2.32
143 144 2.749600 TGGGCTTGACATATTGGCATT 58.250 42.857 0.00 0.00 33.90 3.56
144 145 2.457813 TGGGCTTGACATATTGGCAT 57.542 45.000 0.00 0.00 33.90 4.40
145 146 2.101783 CTTGGGCTTGACATATTGGCA 58.898 47.619 0.00 0.00 30.30 4.92
146 147 1.202452 GCTTGGGCTTGACATATTGGC 60.202 52.381 0.00 0.00 35.22 4.52
147 148 1.410153 GGCTTGGGCTTGACATATTGG 59.590 52.381 0.00 0.00 38.73 3.16
148 149 1.410153 GGGCTTGGGCTTGACATATTG 59.590 52.381 0.00 0.00 38.73 1.90
149 150 1.006998 TGGGCTTGGGCTTGACATATT 59.993 47.619 0.00 0.00 38.73 1.28
150 151 0.630673 TGGGCTTGGGCTTGACATAT 59.369 50.000 0.00 0.00 38.73 1.78
151 152 0.630673 ATGGGCTTGGGCTTGACATA 59.369 50.000 0.00 0.00 38.73 2.29
152 153 0.685458 GATGGGCTTGGGCTTGACAT 60.685 55.000 0.00 0.00 38.73 3.06
153 154 1.304381 GATGGGCTTGGGCTTGACA 60.304 57.895 0.00 0.00 38.73 3.58
154 155 2.054453 GGATGGGCTTGGGCTTGAC 61.054 63.158 0.00 0.00 38.73 3.18
155 156 2.360191 GGATGGGCTTGGGCTTGA 59.640 61.111 0.00 0.00 38.73 3.02
156 157 2.037687 TGGATGGGCTTGGGCTTG 59.962 61.111 0.00 0.00 38.73 4.01
157 158 2.240918 TCTGGATGGGCTTGGGCTT 61.241 57.895 0.00 0.00 38.73 4.35
158 159 2.614969 TCTGGATGGGCTTGGGCT 60.615 61.111 0.00 0.00 38.73 5.19
159 160 2.440980 GTCTGGATGGGCTTGGGC 60.441 66.667 0.00 0.00 37.82 5.36
160 161 2.276740 GGTCTGGATGGGCTTGGG 59.723 66.667 0.00 0.00 0.00 4.12
161 162 0.988145 TAGGGTCTGGATGGGCTTGG 60.988 60.000 0.00 0.00 0.00 3.61
162 163 0.181350 GTAGGGTCTGGATGGGCTTG 59.819 60.000 0.00 0.00 0.00 4.01
163 164 0.044855 AGTAGGGTCTGGATGGGCTT 59.955 55.000 0.00 0.00 0.00 4.35
164 165 0.692419 CAGTAGGGTCTGGATGGGCT 60.692 60.000 0.00 0.00 0.00 5.19
165 166 0.691078 TCAGTAGGGTCTGGATGGGC 60.691 60.000 0.00 0.00 36.25 5.36
166 167 1.696336 CATCAGTAGGGTCTGGATGGG 59.304 57.143 0.00 0.00 36.25 4.00
167 168 1.696336 CCATCAGTAGGGTCTGGATGG 59.304 57.143 0.00 0.00 37.10 3.51
168 169 1.696336 CCCATCAGTAGGGTCTGGATG 59.304 57.143 0.00 0.00 41.61 3.51
169 170 2.109229 CCCATCAGTAGGGTCTGGAT 57.891 55.000 0.00 0.00 41.61 3.41
170 171 3.635099 CCCATCAGTAGGGTCTGGA 57.365 57.895 0.00 0.00 41.61 3.86
177 178 3.274288 GAGTTTTGAGCCCATCAGTAGG 58.726 50.000 0.00 0.00 39.68 3.18
178 179 3.937706 CTGAGTTTTGAGCCCATCAGTAG 59.062 47.826 0.00 0.00 39.68 2.57
179 180 3.307691 CCTGAGTTTTGAGCCCATCAGTA 60.308 47.826 0.00 0.00 39.68 2.74
180 181 2.553904 CCTGAGTTTTGAGCCCATCAGT 60.554 50.000 0.00 0.00 39.68 3.41
181 182 2.089980 CCTGAGTTTTGAGCCCATCAG 58.910 52.381 0.00 0.00 39.68 2.90
182 183 1.887956 GCCTGAGTTTTGAGCCCATCA 60.888 52.381 0.00 0.00 35.62 3.07
183 184 0.813821 GCCTGAGTTTTGAGCCCATC 59.186 55.000 0.00 0.00 0.00 3.51
184 185 0.613012 GGCCTGAGTTTTGAGCCCAT 60.613 55.000 0.00 0.00 37.66 4.00
185 186 1.228552 GGCCTGAGTTTTGAGCCCA 60.229 57.895 0.00 0.00 37.66 5.36
186 187 3.686760 GGCCTGAGTTTTGAGCCC 58.313 61.111 0.00 0.00 37.66 5.19
187 188 0.827507 TTGGGCCTGAGTTTTGAGCC 60.828 55.000 4.53 0.00 43.09 4.70
188 189 1.039856 TTTGGGCCTGAGTTTTGAGC 58.960 50.000 4.53 0.00 0.00 4.26
189 190 1.341209 GGTTTGGGCCTGAGTTTTGAG 59.659 52.381 4.53 0.00 0.00 3.02
190 191 1.408969 GGTTTGGGCCTGAGTTTTGA 58.591 50.000 4.53 0.00 0.00 2.69
191 192 0.392706 GGGTTTGGGCCTGAGTTTTG 59.607 55.000 4.53 0.00 0.00 2.44
192 193 1.112916 CGGGTTTGGGCCTGAGTTTT 61.113 55.000 4.53 0.00 37.06 2.43
193 194 1.530655 CGGGTTTGGGCCTGAGTTT 60.531 57.895 4.53 0.00 37.06 2.66
194 195 2.115266 CGGGTTTGGGCCTGAGTT 59.885 61.111 4.53 0.00 37.06 3.01
195 196 3.966543 CCGGGTTTGGGCCTGAGT 61.967 66.667 4.53 0.00 37.06 3.41
233 234 1.202940 CCTAAAATCCAGGGCCTAGGC 60.203 57.143 26.55 26.55 41.06 3.93
234 235 1.425448 CCCTAAAATCCAGGGCCTAGG 59.575 57.143 5.28 10.90 46.27 3.02
235 236 2.959465 CCCTAAAATCCAGGGCCTAG 57.041 55.000 5.28 0.00 46.27 3.02
241 242 1.152756 CCCGGCCCTAAAATCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
242 243 1.828224 GCCCGGCCCTAAAATCCAG 60.828 63.158 0.00 0.00 0.00 3.86
243 244 2.277404 GCCCGGCCCTAAAATCCA 59.723 61.111 0.00 0.00 0.00 3.41
244 245 2.520982 GGCCCGGCCCTAAAATCC 60.521 66.667 18.83 0.00 44.06 3.01
260 261 3.470888 CCTGTCGGCCTACCCAGG 61.471 72.222 4.73 8.52 45.77 4.45
261 262 3.470888 CCCTGTCGGCCTACCCAG 61.471 72.222 4.73 3.12 0.00 4.45
285 286 2.102252 GAGTTAGTCCTGGCCATCTCAG 59.898 54.545 5.51 0.00 0.00 3.35
286 287 2.111384 GAGTTAGTCCTGGCCATCTCA 58.889 52.381 5.51 0.00 0.00 3.27
287 288 1.067821 CGAGTTAGTCCTGGCCATCTC 59.932 57.143 5.51 5.25 0.00 2.75
288 289 1.115467 CGAGTTAGTCCTGGCCATCT 58.885 55.000 5.51 8.22 0.00 2.90
289 290 0.105039 CCGAGTTAGTCCTGGCCATC 59.895 60.000 5.51 0.00 0.00 3.51
290 291 1.972660 GCCGAGTTAGTCCTGGCCAT 61.973 60.000 5.51 0.00 39.83 4.40
291 292 2.656069 GCCGAGTTAGTCCTGGCCA 61.656 63.158 4.71 4.71 39.83 5.36
292 293 2.187163 GCCGAGTTAGTCCTGGCC 59.813 66.667 0.00 0.00 39.83 5.36
293 294 2.202756 CGCCGAGTTAGTCCTGGC 60.203 66.667 0.00 0.00 42.29 4.85
294 295 2.348888 ACCGCCGAGTTAGTCCTGG 61.349 63.158 0.00 0.00 0.00 4.45
295 296 1.153823 CACCGCCGAGTTAGTCCTG 60.154 63.158 0.00 0.00 0.00 3.86
296 297 1.303888 TCACCGCCGAGTTAGTCCT 60.304 57.895 0.00 0.00 0.00 3.85
297 298 1.139095 CTCACCGCCGAGTTAGTCC 59.861 63.158 0.00 0.00 0.00 3.85
298 299 0.099082 CTCTCACCGCCGAGTTAGTC 59.901 60.000 0.00 0.00 34.46 2.59
299 300 0.608582 ACTCTCACCGCCGAGTTAGT 60.609 55.000 0.00 0.00 37.19 2.24
300 301 0.526662 AACTCTCACCGCCGAGTTAG 59.473 55.000 3.09 0.00 45.72 2.34
301 302 0.963962 AAACTCTCACCGCCGAGTTA 59.036 50.000 5.24 0.00 46.55 2.24
302 303 3.456317 AACTCTCACCGCCGAGTT 58.544 55.556 0.00 0.00 43.55 3.01
303 304 0.600255 CAAAACTCTCACCGCCGAGT 60.600 55.000 0.00 0.00 41.97 4.18
304 305 1.291877 CCAAAACTCTCACCGCCGAG 61.292 60.000 0.00 0.00 0.00 4.63
305 306 1.301401 CCAAAACTCTCACCGCCGA 60.301 57.895 0.00 0.00 0.00 5.54
306 307 0.320073 TACCAAAACTCTCACCGCCG 60.320 55.000 0.00 0.00 0.00 6.46
307 308 2.007608 GATACCAAAACTCTCACCGCC 58.992 52.381 0.00 0.00 0.00 6.13
308 309 2.695359 TGATACCAAAACTCTCACCGC 58.305 47.619 0.00 0.00 0.00 5.68
309 310 4.503910 TCATGATACCAAAACTCTCACCG 58.496 43.478 0.00 0.00 0.00 4.94
355 356 8.250332 ACAAACGCTTCATCATAAATGGTTTAT 58.750 29.630 0.00 0.00 36.31 1.40
366 367 7.849804 AATTCTAGTACAAACGCTTCATCAT 57.150 32.000 0.00 0.00 0.00 2.45
375 376 5.623673 GGTGTGCAAAATTCTAGTACAAACG 59.376 40.000 0.00 0.00 29.96 3.60
419 420 5.117440 CGTACTACAAGCGTGTCAAAACATA 59.883 40.000 9.05 0.00 39.30 2.29
432 433 8.919661 AGTTTAAAAGTATGACGTACTACAAGC 58.080 33.333 7.77 5.18 42.83 4.01
438 439 8.768019 GGTCAAAGTTTAAAAGTATGACGTACT 58.232 33.333 1.22 1.22 45.56 2.73
439 440 8.550376 TGGTCAAAGTTTAAAAGTATGACGTAC 58.450 33.333 13.79 0.00 37.24 3.67
440 441 8.659925 TGGTCAAAGTTTAAAAGTATGACGTA 57.340 30.769 13.79 7.06 37.24 3.57
441 442 7.556733 TGGTCAAAGTTTAAAAGTATGACGT 57.443 32.000 13.79 0.00 37.24 4.34
442 443 8.286800 TGATGGTCAAAGTTTAAAAGTATGACG 58.713 33.333 13.79 0.00 37.24 4.35
443 444 9.959749 TTGATGGTCAAAGTTTAAAAGTATGAC 57.040 29.630 12.63 12.63 32.71 3.06
487 488 6.339587 TCCATAGGTGTGTTTTCCAAATTC 57.660 37.500 0.00 0.00 0.00 2.17
494 495 6.206634 TGAGACAAATCCATAGGTGTGTTTTC 59.793 38.462 0.00 0.00 0.00 2.29
502 508 5.505181 ACTGTTGAGACAAATCCATAGGT 57.495 39.130 0.00 0.00 34.85 3.08
522 531 8.556213 TTTTTGACACTACACTAGAAACAACT 57.444 30.769 0.00 0.00 0.00 3.16
544 553 9.405587 CACCATTTCATAATGTAAGACGTTTTT 57.594 29.630 0.00 0.00 39.62 1.94
545 554 8.026607 CCACCATTTCATAATGTAAGACGTTTT 58.973 33.333 0.00 0.00 39.62 2.43
546 555 7.362574 CCCACCATTTCATAATGTAAGACGTTT 60.363 37.037 0.00 0.00 39.62 3.60
547 556 6.094881 CCCACCATTTCATAATGTAAGACGTT 59.905 38.462 0.00 0.00 39.62 3.99
548 557 5.588648 CCCACCATTTCATAATGTAAGACGT 59.411 40.000 0.00 0.00 39.62 4.34
549 558 5.820423 TCCCACCATTTCATAATGTAAGACG 59.180 40.000 0.00 0.00 39.62 4.18
550 559 6.828785 ACTCCCACCATTTCATAATGTAAGAC 59.171 38.462 0.00 0.00 39.62 3.01
551 560 6.969043 ACTCCCACCATTTCATAATGTAAGA 58.031 36.000 0.00 0.00 39.62 2.10
552 561 7.993183 ACTACTCCCACCATTTCATAATGTAAG 59.007 37.037 0.00 0.00 39.62 2.34
554 563 7.446106 ACTACTCCCACCATTTCATAATGTA 57.554 36.000 0.00 0.00 39.62 2.29
555 564 6.327386 ACTACTCCCACCATTTCATAATGT 57.673 37.500 0.00 0.00 39.62 2.71
556 565 8.924511 AATACTACTCCCACCATTTCATAATG 57.075 34.615 0.00 0.00 40.70 1.90
560 569 9.166222 TGTATAATACTACTCCCACCATTTCAT 57.834 33.333 0.00 0.00 0.00 2.57
561 570 8.555896 TGTATAATACTACTCCCACCATTTCA 57.444 34.615 0.00 0.00 0.00 2.69
562 571 9.269453 GTTGTATAATACTACTCCCACCATTTC 57.731 37.037 0.00 0.00 32.80 2.17
563 572 8.215736 GGTTGTATAATACTACTCCCACCATTT 58.784 37.037 0.00 0.00 35.29 2.32
564 573 7.571357 AGGTTGTATAATACTACTCCCACCATT 59.429 37.037 0.00 0.00 35.29 3.16
565 574 7.080353 AGGTTGTATAATACTACTCCCACCAT 58.920 38.462 0.00 0.00 35.29 3.55
566 575 6.446451 AGGTTGTATAATACTACTCCCACCA 58.554 40.000 0.00 0.00 35.29 4.17
567 576 6.990908 AGGTTGTATAATACTACTCCCACC 57.009 41.667 0.00 0.00 35.29 4.61
568 577 9.676861 AAAAAGGTTGTATAATACTACTCCCAC 57.323 33.333 0.00 0.00 35.29 4.61
605 614 7.147949 GGAGTACTAACTTCCTATTGCAGTGTA 60.148 40.741 0.00 0.00 35.56 2.90
619 628 5.574188 TCTTTACGGAGGGAGTACTAACTT 58.426 41.667 0.00 0.00 35.56 2.66
624 633 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
625 634 8.637099 ACTTATATTTCTTTACGGAGGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
626 635 8.636213 CACTTATATTTCTTTACGGAGGGAGTA 58.364 37.037 0.00 0.00 0.00 2.59
627 636 7.498443 CACTTATATTTCTTTACGGAGGGAGT 58.502 38.462 0.00 0.00 0.00 3.85
628 637 6.424207 GCACTTATATTTCTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
629 638 6.285990 GCACTTATATTTCTTTACGGAGGGA 58.714 40.000 0.00 0.00 0.00 4.20
630 639 5.176958 CGCACTTATATTTCTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
631 640 5.751990 ACGCACTTATATTTCTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
632 641 6.823678 ACGCACTTATATTTCTTTACGGAG 57.176 37.500 0.00 0.00 0.00 4.63
633 642 7.599630 AAACGCACTTATATTTCTTTACGGA 57.400 32.000 0.00 0.00 0.00 4.69
634 643 8.810427 TCTAAACGCACTTATATTTCTTTACGG 58.190 33.333 0.00 0.00 0.00 4.02
639 648 9.601217 AGTGATCTAAACGCACTTATATTTCTT 57.399 29.630 0.00 0.00 39.69 2.52
640 649 9.250624 GAGTGATCTAAACGCACTTATATTTCT 57.749 33.333 0.00 0.00 42.47 2.52
641 650 9.250624 AGAGTGATCTAAACGCACTTATATTTC 57.749 33.333 0.00 0.00 42.47 2.17
642 651 9.601217 AAGAGTGATCTAAACGCACTTATATTT 57.399 29.630 0.00 0.00 42.47 1.40
648 657 9.601217 AAATATAAGAGTGATCTAAACGCACTT 57.399 29.630 0.00 0.00 42.47 3.16
649 658 9.250624 GAAATATAAGAGTGATCTAAACGCACT 57.749 33.333 0.00 0.00 44.87 4.40
650 659 9.250624 AGAAATATAAGAGTGATCTAAACGCAC 57.749 33.333 0.00 0.00 0.00 5.34
651 660 9.817809 AAGAAATATAAGAGTGATCTAAACGCA 57.182 29.630 0.00 0.00 0.00 5.24
660 669 9.838339 CCCACTGTAAAGAAATATAAGAGTGAT 57.162 33.333 0.00 0.00 31.88 3.06
661 670 9.042450 TCCCACTGTAAAGAAATATAAGAGTGA 57.958 33.333 0.00 0.00 31.88 3.41
662 671 9.319143 CTCCCACTGTAAAGAAATATAAGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
663 672 9.047947 ACTCCCACTGTAAAGAAATATAAGAGT 57.952 33.333 0.00 0.00 0.00 3.24
669 678 8.211629 GGATGTACTCCCACTGTAAAGAAATAT 58.788 37.037 0.00 0.00 38.19 1.28
670 679 7.402071 AGGATGTACTCCCACTGTAAAGAAATA 59.598 37.037 7.50 0.00 46.27 1.40
671 680 6.215636 AGGATGTACTCCCACTGTAAAGAAAT 59.784 38.462 7.50 0.00 46.27 2.17
672 681 5.546499 AGGATGTACTCCCACTGTAAAGAAA 59.454 40.000 7.50 0.00 46.27 2.52
673 682 5.091552 AGGATGTACTCCCACTGTAAAGAA 58.908 41.667 7.50 0.00 46.27 2.52
674 683 4.684724 AGGATGTACTCCCACTGTAAAGA 58.315 43.478 7.50 0.00 46.27 2.52
675 684 6.540438 TTAGGATGTACTCCCACTGTAAAG 57.460 41.667 7.50 0.00 46.27 1.85
676 685 6.938698 TTTAGGATGTACTCCCACTGTAAA 57.061 37.500 7.50 4.30 46.27 2.01
677 686 6.938698 TTTTAGGATGTACTCCCACTGTAA 57.061 37.500 7.50 0.00 46.27 2.41
678 687 6.296030 GGTTTTTAGGATGTACTCCCACTGTA 60.296 42.308 7.50 0.00 46.27 2.74
679 688 5.514310 GGTTTTTAGGATGTACTCCCACTGT 60.514 44.000 7.50 0.00 46.27 3.55
680 689 4.941873 GGTTTTTAGGATGTACTCCCACTG 59.058 45.833 7.50 0.00 46.27 3.66
681 690 4.850386 AGGTTTTTAGGATGTACTCCCACT 59.150 41.667 7.50 0.00 46.27 4.00
682 691 5.175388 AGGTTTTTAGGATGTACTCCCAC 57.825 43.478 7.50 0.00 46.27 4.61
683 692 5.853572 AAGGTTTTTAGGATGTACTCCCA 57.146 39.130 7.50 0.00 46.27 4.37
684 693 7.571025 TGATAAGGTTTTTAGGATGTACTCCC 58.429 38.462 7.50 2.60 46.27 4.30
685 694 9.628500 ATTGATAAGGTTTTTAGGATGTACTCC 57.372 33.333 0.00 0.00 45.33 3.85
717 726 2.038557 AGTGCACGAAATAGACCACCTT 59.961 45.455 12.01 0.00 0.00 3.50
725 734 4.987832 ACTCACTCTAGTGCACGAAATAG 58.012 43.478 12.01 7.84 45.25 1.73
737 892 7.481642 ACCACATTTCGTATAACTCACTCTAG 58.518 38.462 0.00 0.00 0.00 2.43
974 1133 1.603802 GTGTGTGTGTGATGAACTGGG 59.396 52.381 0.00 0.00 0.00 4.45
993 1161 1.181786 CCATGCCCACCATTTTACGT 58.818 50.000 0.00 0.00 29.71 3.57
997 1165 1.678724 GTGCCATGCCCACCATTTT 59.321 52.632 3.99 0.00 29.71 1.82
1022 1195 3.181434 TGTTTGCCATGAAGTAGGGAAGT 60.181 43.478 0.00 0.00 36.56 3.01
1159 1335 2.747686 GACCTTGGTCGCCTTGGA 59.252 61.111 3.87 0.00 0.00 3.53
2196 2375 0.254178 AGTGAAGCGCCTCCATGAAT 59.746 50.000 2.29 0.00 0.00 2.57
2445 2624 4.161295 CCGCCGGCATTCTCCTCA 62.161 66.667 28.98 0.00 0.00 3.86
2611 4159 3.947196 GCACCTCACAATATCACATCCAA 59.053 43.478 0.00 0.00 0.00 3.53
2621 4169 2.234661 CTCACCTCAGCACCTCACAATA 59.765 50.000 0.00 0.00 0.00 1.90
2633 4181 3.465403 CCCGGGCTCTCACCTCAG 61.465 72.222 8.08 0.00 0.00 3.35
2698 4251 4.049186 CGTAATACCTTGAACATCCTCCG 58.951 47.826 0.00 0.00 0.00 4.63
2770 4353 6.883744 ACAAAAATTGTCAAGTGGTACCATT 58.116 32.000 19.72 11.73 40.56 3.16
2773 4356 8.241367 CCTATACAAAAATTGTCAAGTGGTACC 58.759 37.037 4.43 4.43 44.12 3.34
2885 4468 7.878477 AATCATCACATTTGCAGTGTAAAAG 57.122 32.000 10.53 8.79 38.16 2.27
2981 4653 8.058847 TGGCTGGATTTAGTTGGTATTCTAAAT 58.941 33.333 9.07 9.07 44.36 1.40
3067 4739 5.107645 GCAGCGGGTTTTTACAAAATACTTG 60.108 40.000 0.00 0.00 0.00 3.16
3072 4744 3.744238 AGCAGCGGGTTTTTACAAAAT 57.256 38.095 0.00 0.00 0.00 1.82
3084 4759 1.639298 GCTCAACACTTAGCAGCGGG 61.639 60.000 0.00 0.00 38.63 6.13
3095 4770 5.118990 TGCCTCTAGATTAATGCTCAACAC 58.881 41.667 0.00 0.00 0.00 3.32
3157 4839 3.344515 GGGGAGCACTAGTTTTACCTTG 58.655 50.000 0.00 0.00 0.00 3.61
3204 4886 2.186125 CGCGAGTTAGGGTTCCCC 59.814 66.667 0.00 0.00 45.90 4.81
3205 4887 2.510918 GCGCGAGTTAGGGTTCCC 60.511 66.667 12.10 0.00 0.00 3.97
3206 4888 2.510918 GGCGCGAGTTAGGGTTCC 60.511 66.667 12.10 0.00 0.00 3.62
3207 4889 2.098831 GTGGCGCGAGTTAGGGTTC 61.099 63.158 12.10 0.00 0.00 3.62
3208 4890 2.047560 GTGGCGCGAGTTAGGGTT 60.048 61.111 12.10 0.00 0.00 4.11
3209 4891 4.430765 CGTGGCGCGAGTTAGGGT 62.431 66.667 16.70 0.00 44.77 4.34
3313 4995 4.862823 AGCTAGTCGAGGGGCCCC 62.863 72.222 35.90 35.90 0.00 5.80
3314 4996 2.764547 AAGCTAGTCGAGGGGCCC 60.765 66.667 17.12 17.12 0.00 5.80
3315 4997 2.816012 GAAGCTAGTCGAGGGGCC 59.184 66.667 0.00 0.00 0.00 5.80
3316 4998 2.413765 CGAAGCTAGTCGAGGGGC 59.586 66.667 1.44 0.00 43.86 5.80
3317 4999 1.726533 GACCGAAGCTAGTCGAGGGG 61.727 65.000 9.37 0.00 43.86 4.79
3318 5000 0.748729 AGACCGAAGCTAGTCGAGGG 60.749 60.000 9.37 0.00 43.86 4.30
3319 5001 0.658897 GAGACCGAAGCTAGTCGAGG 59.341 60.000 9.37 0.00 43.86 4.63
3320 5002 1.329292 CTGAGACCGAAGCTAGTCGAG 59.671 57.143 9.37 2.65 43.86 4.04
3321 5003 1.370609 CTGAGACCGAAGCTAGTCGA 58.629 55.000 9.37 0.00 43.86 4.20
3322 5004 0.248296 GCTGAGACCGAAGCTAGTCG 60.248 60.000 0.66 0.66 40.77 4.18
3323 5005 0.101579 GGCTGAGACCGAAGCTAGTC 59.898 60.000 3.82 3.82 39.46 2.59
3324 5006 1.324005 GGGCTGAGACCGAAGCTAGT 61.324 60.000 0.00 0.00 39.46 2.57
3325 5007 1.439644 GGGCTGAGACCGAAGCTAG 59.560 63.158 0.00 0.00 39.46 3.42
3326 5008 2.058595 GGGGCTGAGACCGAAGCTA 61.059 63.158 0.00 0.00 39.46 3.32
3327 5009 3.394836 GGGGCTGAGACCGAAGCT 61.395 66.667 0.00 0.00 39.46 3.74
3328 5010 3.378399 GAGGGGCTGAGACCGAAGC 62.378 68.421 0.00 0.00 38.76 3.86
3329 5011 2.726351 GGAGGGGCTGAGACCGAAG 61.726 68.421 0.00 0.00 0.00 3.79
3330 5012 2.683933 GGAGGGGCTGAGACCGAA 60.684 66.667 0.00 0.00 0.00 4.30
3331 5013 3.663815 GAGGAGGGGCTGAGACCGA 62.664 68.421 0.00 0.00 0.00 4.69
3332 5014 3.151022 GAGGAGGGGCTGAGACCG 61.151 72.222 0.00 0.00 0.00 4.79
3333 5015 2.766229 GGAGGAGGGGCTGAGACC 60.766 72.222 0.00 0.00 0.00 3.85
3334 5016 2.766229 GGGAGGAGGGGCTGAGAC 60.766 72.222 0.00 0.00 0.00 3.36
3335 5017 4.095400 GGGGAGGAGGGGCTGAGA 62.095 72.222 0.00 0.00 0.00 3.27
3478 5160 4.760047 CACGTTGGGGCGGAGGAG 62.760 72.222 0.00 0.00 35.98 3.69
3480 5162 4.636435 AACACGTTGGGGCGGAGG 62.636 66.667 0.00 0.00 35.98 4.30
3481 5163 3.047877 GAACACGTTGGGGCGGAG 61.048 66.667 0.00 0.00 35.98 4.63
3482 5164 4.629523 GGAACACGTTGGGGCGGA 62.630 66.667 0.00 0.00 35.98 5.54
3485 5167 4.941309 ACGGGAACACGTTGGGGC 62.941 66.667 0.00 0.00 46.25 5.80
3486 5168 2.975799 CACGGGAACACGTTGGGG 60.976 66.667 0.00 0.00 46.25 4.96
3487 5169 3.656045 GCACGGGAACACGTTGGG 61.656 66.667 0.00 0.00 46.25 4.12
3488 5170 3.656045 GGCACGGGAACACGTTGG 61.656 66.667 0.00 0.00 46.25 3.77
3489 5171 2.892334 CTGGCACGGGAACACGTTG 61.892 63.158 0.00 0.00 46.25 4.10
3490 5172 2.391724 ATCTGGCACGGGAACACGTT 62.392 55.000 0.00 0.00 46.25 3.99
3492 5174 2.047274 ATCTGGCACGGGAACACG 60.047 61.111 0.00 0.00 40.31 4.49
3493 5175 1.021390 CAGATCTGGCACGGGAACAC 61.021 60.000 15.38 0.00 33.92 3.32
3494 5176 1.191489 TCAGATCTGGCACGGGAACA 61.191 55.000 22.42 0.00 33.92 3.18
3495 5177 0.741221 GTCAGATCTGGCACGGGAAC 60.741 60.000 22.39 6.80 34.82 3.62
3496 5178 1.596934 GTCAGATCTGGCACGGGAA 59.403 57.895 22.39 0.00 34.82 3.97
3497 5179 2.710902 CGTCAGATCTGGCACGGGA 61.711 63.158 26.10 0.84 34.22 5.14
3498 5180 2.202797 CGTCAGATCTGGCACGGG 60.203 66.667 26.10 6.83 34.22 5.28
3499 5181 2.887568 GCGTCAGATCTGGCACGG 60.888 66.667 28.07 15.19 34.22 4.94
3500 5182 1.875813 GAGCGTCAGATCTGGCACG 60.876 63.158 26.10 25.44 34.22 5.34
3501 5183 1.875813 CGAGCGTCAGATCTGGCAC 60.876 63.158 26.10 17.36 34.22 5.01
3502 5184 2.271607 GACGAGCGTCAGATCTGGCA 62.272 60.000 26.10 3.96 44.02 4.92
3503 5185 1.587613 GACGAGCGTCAGATCTGGC 60.588 63.158 22.42 20.11 44.02 4.85
3504 5186 4.700037 GACGAGCGTCAGATCTGG 57.300 61.111 22.42 8.67 44.02 3.86
3515 5197 2.512301 GCAGATCACGCTGACGAGC 61.512 63.158 0.00 0.00 43.93 5.03
3516 5198 1.875813 GGCAGATCACGCTGACGAG 60.876 63.158 7.04 0.00 43.93 4.18
3517 5199 2.181777 GGCAGATCACGCTGACGA 59.818 61.111 7.04 0.00 43.93 4.20
3519 5201 1.738099 AACGGCAGATCACGCTGAC 60.738 57.895 19.54 0.00 40.62 3.51
3520 5202 1.737735 CAACGGCAGATCACGCTGA 60.738 57.895 19.54 0.00 39.15 4.26
3521 5203 1.086067 ATCAACGGCAGATCACGCTG 61.086 55.000 12.95 12.95 41.71 5.18
3522 5204 1.086067 CATCAACGGCAGATCACGCT 61.086 55.000 7.04 0.00 0.00 5.07
3523 5205 1.083806 TCATCAACGGCAGATCACGC 61.084 55.000 0.00 0.00 0.00 5.34
3524 5206 0.647410 GTCATCAACGGCAGATCACG 59.353 55.000 0.00 0.00 0.00 4.35
3535 5217 2.818274 GGGTCCGGCGTCATCAAC 60.818 66.667 6.01 0.00 0.00 3.18
3536 5218 4.090588 GGGGTCCGGCGTCATCAA 62.091 66.667 6.01 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.