Multiple sequence alignment - TraesCS3B01G424000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G424000 chr3B 100.000 2621 0 0 1 2621 661784863 661787483 0.000000e+00 4841.0
1 TraesCS3B01G424000 chr3B 92.351 2327 144 15 322 2621 661756660 661758979 0.000000e+00 3280.0
2 TraesCS3B01G424000 chr3B 89.571 815 47 14 1844 2621 156641983 156641170 0.000000e+00 1000.0
3 TraesCS3B01G424000 chr3B 92.757 428 23 6 361 781 661566242 661566668 1.720000e-171 612.0
4 TraesCS3B01G424000 chr3B 87.595 524 47 7 493 1013 661571048 661571556 2.250000e-165 592.0
5 TraesCS3B01G424000 chr3B 84.768 604 49 18 1267 1838 685067261 685067853 1.360000e-157 566.0
6 TraesCS3B01G424000 chr3B 87.602 492 34 18 1368 1838 661568408 661568893 1.770000e-151 545.0
7 TraesCS3B01G424000 chr3B 86.327 490 43 13 1368 1838 661570098 661570582 1.800000e-141 512.0
8 TraesCS3B01G424000 chr3B 88.783 419 28 6 494 908 661567617 661568020 1.810000e-136 496.0
9 TraesCS3B01G424000 chr3B 92.562 242 17 1 1042 1282 685066990 685067231 1.930000e-91 346.0
10 TraesCS3B01G424000 chr3B 90.638 235 21 1 1049 1282 684620341 684620107 7.040000e-81 311.0
11 TraesCS3B01G424000 chr3B 97.674 43 0 1 1797 1838 661567122 661567164 3.620000e-09 73.1
12 TraesCS3B01G424000 chr3D 88.163 1301 89 28 594 1838 500090281 500091572 0.000000e+00 1489.0
13 TraesCS3B01G424000 chr3D 86.827 1374 86 48 517 1828 500018321 500019661 0.000000e+00 1447.0
14 TraesCS3B01G424000 chr3D 90.045 663 31 17 519 1153 500127129 500127784 0.000000e+00 826.0
15 TraesCS3B01G424000 chr3D 87.263 581 46 13 1267 1828 520281414 520281985 2.840000e-179 638.0
16 TraesCS3B01G424000 chr3D 92.619 420 26 3 1267 1686 520246208 520246622 1.340000e-167 599.0
17 TraesCS3B01G424000 chr3D 87.939 456 26 14 1395 1828 500127898 500128346 6.470000e-141 510.0
18 TraesCS3B01G424000 chr3D 93.590 234 14 1 1050 1282 520245945 520246178 5.370000e-92 348.0
19 TraesCS3B01G424000 chr3D 92.149 242 18 1 1042 1282 520281143 520281384 8.980000e-90 340.0
20 TraesCS3B01G424000 chr3D 88.186 237 24 4 1049 1282 519950713 519950478 1.990000e-71 279.0
21 TraesCS3B01G424000 chr3D 92.157 102 7 1 1844 1944 562355623 562355522 2.720000e-30 143.0
22 TraesCS3B01G424000 chr4D 87.018 1271 103 42 519 1745 499214440 499213188 0.000000e+00 1376.0
23 TraesCS3B01G424000 chr4D 91.047 726 35 8 1926 2621 2699025 2699750 0.000000e+00 953.0
24 TraesCS3B01G424000 chr4D 90.123 729 38 8 1927 2621 5368939 5368211 0.000000e+00 917.0
25 TraesCS3B01G424000 chr3A 86.745 1192 103 35 517 1678 639662313 639663479 0.000000e+00 1275.0
26 TraesCS3B01G424000 chr3A 86.577 1192 104 36 517 1678 639655516 639656681 0.000000e+00 1264.0
27 TraesCS3B01G424000 chr3A 91.529 425 22 6 508 931 639566673 639567084 8.140000e-160 573.0
28 TraesCS3B01G424000 chr3A 90.205 439 40 2 1267 1703 655786727 655787164 1.050000e-158 569.0
29 TraesCS3B01G424000 chr3A 90.045 442 38 3 1267 1703 655669086 655669526 3.790000e-158 568.0
30 TraesCS3B01G424000 chr3A 92.562 242 17 1 1042 1282 655668815 655669056 1.930000e-91 346.0
31 TraesCS3B01G424000 chr3A 91.322 242 20 1 1042 1282 655786456 655786697 1.940000e-86 329.0
32 TraesCS3B01G424000 chr3A 89.017 173 15 4 334 505 639562224 639562393 7.350000e-51 211.0
33 TraesCS3B01G424000 chr3A 89.412 170 13 4 334 500 639565471 639565638 2.640000e-50 209.0
34 TraesCS3B01G424000 chr3A 87.778 180 16 6 334 509 639661108 639661285 3.420000e-49 206.0
35 TraesCS3B01G424000 chr3A 88.824 170 14 4 334 500 639558981 639559148 1.230000e-48 204.0
36 TraesCS3B01G424000 chr3A 88.824 170 14 4 334 500 639568715 639568882 1.230000e-48 204.0
37 TraesCS3B01G424000 chr3A 88.824 170 14 4 334 500 639571954 639572121 1.230000e-48 204.0
38 TraesCS3B01G424000 chr3A 88.235 170 15 4 334 500 639575205 639575372 5.720000e-47 198.0
39 TraesCS3B01G424000 chr3A 93.103 87 6 0 927 1013 639657727 639657813 7.610000e-26 128.0
40 TraesCS3B01G424000 chr3A 90.411 73 4 3 1769 1838 655670739 655670811 2.780000e-15 93.5
41 TraesCS3B01G424000 chr1B 90.652 813 40 12 1844 2621 270312853 270313664 0.000000e+00 1048.0
42 TraesCS3B01G424000 chr7B 90.184 815 43 12 1844 2621 23418407 23417593 0.000000e+00 1027.0
43 TraesCS3B01G424000 chr5B 89.697 825 48 9 1834 2621 611644926 611645750 0.000000e+00 1018.0
44 TraesCS3B01G424000 chr5B 89.487 818 45 10 1844 2621 277789946 277790762 0.000000e+00 996.0
45 TraesCS3B01G424000 chr5B 90.099 505 27 7 2140 2621 548454538 548455042 3.680000e-178 634.0
46 TraesCS3B01G424000 chr5B 90.385 312 19 6 1844 2144 548451588 548451899 1.460000e-107 399.0
47 TraesCS3B01G424000 chr5B 84.894 331 23 11 1 329 432204646 432204341 2.530000e-80 309.0
48 TraesCS3B01G424000 chr6B 92.393 723 28 8 1926 2621 680802516 680801794 0.000000e+00 1005.0
49 TraesCS3B01G424000 chr6B 91.551 722 34 9 1926 2621 258004711 258003991 0.000000e+00 970.0
50 TraesCS3B01G424000 chr6B 88.643 361 19 4 2283 2621 171048262 171047902 1.120000e-113 420.0
51 TraesCS3B01G424000 chr6B 84.211 190 24 5 140 326 117657436 117657250 2.070000e-41 180.0
52 TraesCS3B01G424000 chr5A 89.571 815 48 13 1844 2621 591484088 591483274 0.000000e+00 1000.0
53 TraesCS3B01G424000 chr5A 97.853 326 5 2 1 326 656637401 656637078 1.760000e-156 562.0
54 TraesCS3B01G424000 chr7D 92.094 721 31 8 1926 2621 631647579 631648298 0.000000e+00 992.0
55 TraesCS3B01G424000 chr7D 88.830 188 16 5 137 321 18554367 18554552 2.620000e-55 226.0
56 TraesCS3B01G424000 chr2D 91.413 722 35 9 1926 2621 552108884 552109604 0.000000e+00 965.0
57 TraesCS3B01G424000 chr5D 90.960 719 39 8 1927 2620 57580996 57580279 0.000000e+00 944.0
58 TraesCS3B01G424000 chr6D 90.393 687 39 13 1926 2587 385713273 385712589 0.000000e+00 878.0
59 TraesCS3B01G424000 chr6D 85.340 191 23 5 141 329 300750800 300750987 2.660000e-45 193.0
60 TraesCS3B01G424000 chr2A 95.652 322 11 3 1 320 593260148 593260468 5.000000e-142 514.0
61 TraesCS3B01G424000 chr2A 80.328 122 18 6 209 327 53624809 53624927 1.290000e-13 87.9
62 TraesCS3B01G424000 chr1A 89.961 259 6 3 2382 2621 522521928 522521671 1.510000e-82 316.0
63 TraesCS3B01G424000 chr1A 84.865 185 22 6 140 321 187602544 187602363 5.760000e-42 182.0
64 TraesCS3B01G424000 chr1D 80.609 361 24 18 1 322 486366047 486365694 1.210000e-58 237.0
65 TraesCS3B01G424000 chr1D 85.326 184 23 4 140 321 339290280 339290099 1.240000e-43 187.0
66 TraesCS3B01G424000 chr1D 91.429 105 5 4 1831 1933 395851554 395851656 9.780000e-30 141.0
67 TraesCS3B01G424000 chr6A 85.027 187 21 6 140 322 396304193 396304376 1.600000e-42 183.0
68 TraesCS3B01G424000 chr7A 83.500 200 24 9 130 324 189005815 189006010 7.450000e-41 178.0
69 TraesCS3B01G424000 chr2B 89.333 75 4 4 253 327 678639603 678639533 9.990000e-15 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G424000 chr3B 661784863 661787483 2620 False 4841.000000 4841 100.000000 1 2621 1 chr3B.!!$F2 2620
1 TraesCS3B01G424000 chr3B 661756660 661758979 2319 False 3280.000000 3280 92.351000 322 2621 1 chr3B.!!$F1 2299
2 TraesCS3B01G424000 chr3B 156641170 156641983 813 True 1000.000000 1000 89.571000 1844 2621 1 chr3B.!!$R1 777
3 TraesCS3B01G424000 chr3B 661566242 661571556 5314 False 471.683333 612 90.123000 361 1838 6 chr3B.!!$F3 1477
4 TraesCS3B01G424000 chr3B 685066990 685067853 863 False 456.000000 566 88.665000 1042 1838 2 chr3B.!!$F4 796
5 TraesCS3B01G424000 chr3D 500090281 500091572 1291 False 1489.000000 1489 88.163000 594 1838 1 chr3D.!!$F2 1244
6 TraesCS3B01G424000 chr3D 500018321 500019661 1340 False 1447.000000 1447 86.827000 517 1828 1 chr3D.!!$F1 1311
7 TraesCS3B01G424000 chr3D 500127129 500128346 1217 False 668.000000 826 88.992000 519 1828 2 chr3D.!!$F3 1309
8 TraesCS3B01G424000 chr3D 520281143 520281985 842 False 489.000000 638 89.706000 1042 1828 2 chr3D.!!$F5 786
9 TraesCS3B01G424000 chr3D 520245945 520246622 677 False 473.500000 599 93.104500 1050 1686 2 chr3D.!!$F4 636
10 TraesCS3B01G424000 chr4D 499213188 499214440 1252 True 1376.000000 1376 87.018000 519 1745 1 chr4D.!!$R2 1226
11 TraesCS3B01G424000 chr4D 2699025 2699750 725 False 953.000000 953 91.047000 1926 2621 1 chr4D.!!$F1 695
12 TraesCS3B01G424000 chr4D 5368211 5368939 728 True 917.000000 917 90.123000 1927 2621 1 chr4D.!!$R1 694
13 TraesCS3B01G424000 chr3A 639655516 639663479 7963 False 718.250000 1275 88.550750 334 1678 4 chr3A.!!$F2 1344
14 TraesCS3B01G424000 chr3A 655786456 655787164 708 False 449.000000 569 90.763500 1042 1703 2 chr3A.!!$F4 661
15 TraesCS3B01G424000 chr3A 655668815 655670811 1996 False 335.833333 568 91.006000 1042 1838 3 chr3A.!!$F3 796
16 TraesCS3B01G424000 chr3A 639558981 639575372 16391 False 257.571429 573 89.237857 334 931 7 chr3A.!!$F1 597
17 TraesCS3B01G424000 chr1B 270312853 270313664 811 False 1048.000000 1048 90.652000 1844 2621 1 chr1B.!!$F1 777
18 TraesCS3B01G424000 chr7B 23417593 23418407 814 True 1027.000000 1027 90.184000 1844 2621 1 chr7B.!!$R1 777
19 TraesCS3B01G424000 chr5B 611644926 611645750 824 False 1018.000000 1018 89.697000 1834 2621 1 chr5B.!!$F2 787
20 TraesCS3B01G424000 chr5B 277789946 277790762 816 False 996.000000 996 89.487000 1844 2621 1 chr5B.!!$F1 777
21 TraesCS3B01G424000 chr5B 548451588 548455042 3454 False 516.500000 634 90.242000 1844 2621 2 chr5B.!!$F3 777
22 TraesCS3B01G424000 chr6B 680801794 680802516 722 True 1005.000000 1005 92.393000 1926 2621 1 chr6B.!!$R4 695
23 TraesCS3B01G424000 chr6B 258003991 258004711 720 True 970.000000 970 91.551000 1926 2621 1 chr6B.!!$R3 695
24 TraesCS3B01G424000 chr5A 591483274 591484088 814 True 1000.000000 1000 89.571000 1844 2621 1 chr5A.!!$R1 777
25 TraesCS3B01G424000 chr7D 631647579 631648298 719 False 992.000000 992 92.094000 1926 2621 1 chr7D.!!$F2 695
26 TraesCS3B01G424000 chr2D 552108884 552109604 720 False 965.000000 965 91.413000 1926 2621 1 chr2D.!!$F1 695
27 TraesCS3B01G424000 chr5D 57580279 57580996 717 True 944.000000 944 90.960000 1927 2620 1 chr5D.!!$R1 693
28 TraesCS3B01G424000 chr6D 385712589 385713273 684 True 878.000000 878 90.393000 1926 2587 1 chr6D.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.165944 AGCTTTGCACGTACGCATTC 59.834 50.0 16.72 2.41 42.62 2.67 F
102 103 0.167470 CCAGCAGCAACATCAACTCG 59.833 55.0 0.00 0.00 0.00 4.18 F
103 104 0.167470 CAGCAGCAACATCAACTCGG 59.833 55.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1369 19954 0.034756 TAATACTGCATGGCGCCGAT 59.965 50.0 23.90 13.76 41.33 4.18 R
1599 21875 0.178953 AATGTTGCAGGCCCTGAAGT 60.179 50.0 16.85 0.00 32.44 3.01 R
2087 23595 0.529773 GATGACGGAGCGTGCCAATA 60.530 55.0 0.00 0.00 41.37 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.528129 GTGCTTGTTTGAGCCTAGCT 58.472 50.000 0.00 0.00 43.88 3.32
20 21 1.882623 GTGCTTGTTTGAGCCTAGCTT 59.117 47.619 0.00 0.00 39.88 3.74
21 22 2.294512 GTGCTTGTTTGAGCCTAGCTTT 59.705 45.455 0.00 0.00 39.88 3.51
22 23 2.294233 TGCTTGTTTGAGCCTAGCTTTG 59.706 45.455 0.00 0.00 39.88 2.77
23 24 2.924029 GCTTGTTTGAGCCTAGCTTTGC 60.924 50.000 0.00 0.00 39.88 3.68
24 25 1.979855 TGTTTGAGCCTAGCTTTGCA 58.020 45.000 9.49 0.00 39.88 4.08
25 26 1.608590 TGTTTGAGCCTAGCTTTGCAC 59.391 47.619 9.49 4.17 39.88 4.57
26 27 0.874390 TTTGAGCCTAGCTTTGCACG 59.126 50.000 9.49 0.00 39.88 5.34
27 28 0.250295 TTGAGCCTAGCTTTGCACGT 60.250 50.000 9.49 0.00 39.88 4.49
28 29 0.606096 TGAGCCTAGCTTTGCACGTA 59.394 50.000 9.49 0.00 39.88 3.57
29 30 1.000145 GAGCCTAGCTTTGCACGTAC 59.000 55.000 9.49 0.00 39.88 3.67
30 31 0.736325 AGCCTAGCTTTGCACGTACG 60.736 55.000 15.01 15.01 33.89 3.67
31 32 1.708027 CCTAGCTTTGCACGTACGC 59.292 57.895 16.72 0.00 0.00 4.42
32 33 1.011968 CCTAGCTTTGCACGTACGCA 61.012 55.000 16.72 2.78 41.03 5.24
33 34 0.999406 CTAGCTTTGCACGTACGCAT 59.001 50.000 16.72 0.00 42.62 4.73
34 35 1.393539 CTAGCTTTGCACGTACGCATT 59.606 47.619 16.72 0.00 42.62 3.56
35 36 0.165944 AGCTTTGCACGTACGCATTC 59.834 50.000 16.72 2.41 42.62 2.67
36 37 0.793104 GCTTTGCACGTACGCATTCC 60.793 55.000 16.72 0.00 42.62 3.01
37 38 0.515127 CTTTGCACGTACGCATTCCA 59.485 50.000 16.72 2.49 42.62 3.53
38 39 0.515127 TTTGCACGTACGCATTCCAG 59.485 50.000 16.72 0.00 42.62 3.86
39 40 1.906994 TTGCACGTACGCATTCCAGC 61.907 55.000 16.72 8.69 42.62 4.85
50 51 3.340337 GCATTCCAGCGATCTAAAACC 57.660 47.619 0.00 0.00 0.00 3.27
51 52 2.682856 GCATTCCAGCGATCTAAAACCA 59.317 45.455 0.00 0.00 0.00 3.67
52 53 3.128589 GCATTCCAGCGATCTAAAACCAA 59.871 43.478 0.00 0.00 0.00 3.67
53 54 4.662145 CATTCCAGCGATCTAAAACCAAC 58.338 43.478 0.00 0.00 0.00 3.77
54 55 3.410631 TCCAGCGATCTAAAACCAACA 57.589 42.857 0.00 0.00 0.00 3.33
55 56 3.071479 TCCAGCGATCTAAAACCAACAC 58.929 45.455 0.00 0.00 0.00 3.32
56 57 2.161609 CCAGCGATCTAAAACCAACACC 59.838 50.000 0.00 0.00 0.00 4.16
57 58 2.811431 CAGCGATCTAAAACCAACACCA 59.189 45.455 0.00 0.00 0.00 4.17
58 59 3.252215 CAGCGATCTAAAACCAACACCAA 59.748 43.478 0.00 0.00 0.00 3.67
59 60 3.502211 AGCGATCTAAAACCAACACCAAG 59.498 43.478 0.00 0.00 0.00 3.61
60 61 3.252458 GCGATCTAAAACCAACACCAAGT 59.748 43.478 0.00 0.00 0.00 3.16
61 62 4.783242 CGATCTAAAACCAACACCAAGTG 58.217 43.478 0.00 0.00 39.75 3.16
62 63 4.546570 GATCTAAAACCAACACCAAGTGC 58.453 43.478 0.00 0.00 36.98 4.40
63 64 2.356382 TCTAAAACCAACACCAAGTGCG 59.644 45.455 0.00 0.00 36.98 5.34
64 65 1.178276 AAAACCAACACCAAGTGCGA 58.822 45.000 0.00 0.00 36.98 5.10
65 66 0.738389 AAACCAACACCAAGTGCGAG 59.262 50.000 0.00 0.00 36.98 5.03
66 67 1.101049 AACCAACACCAAGTGCGAGG 61.101 55.000 0.00 0.00 36.98 4.63
67 68 1.227823 CCAACACCAAGTGCGAGGA 60.228 57.895 0.00 0.00 36.98 3.71
68 69 0.606401 CCAACACCAAGTGCGAGGAT 60.606 55.000 0.00 0.00 36.98 3.24
69 70 1.238439 CAACACCAAGTGCGAGGATT 58.762 50.000 0.00 0.00 36.98 3.01
70 71 1.197721 CAACACCAAGTGCGAGGATTC 59.802 52.381 0.00 0.00 36.98 2.52
80 81 4.256180 GAGGATTCGCCCCGCCAT 62.256 66.667 0.00 0.00 37.37 4.40
81 82 4.256180 AGGATTCGCCCCGCCATC 62.256 66.667 0.00 0.00 37.37 3.51
82 83 4.256180 GGATTCGCCCCGCCATCT 62.256 66.667 0.00 0.00 0.00 2.90
83 84 2.666526 GATTCGCCCCGCCATCTC 60.667 66.667 0.00 0.00 0.00 2.75
84 85 4.256180 ATTCGCCCCGCCATCTCC 62.256 66.667 0.00 0.00 0.00 3.71
89 90 4.559063 CCCCGCCATCTCCAGCAG 62.559 72.222 0.00 0.00 0.00 4.24
91 92 4.478371 CCGCCATCTCCAGCAGCA 62.478 66.667 0.00 0.00 0.00 4.41
92 93 2.437180 CGCCATCTCCAGCAGCAA 60.437 61.111 0.00 0.00 0.00 3.91
93 94 2.758089 CGCCATCTCCAGCAGCAAC 61.758 63.158 0.00 0.00 0.00 4.17
94 95 1.676635 GCCATCTCCAGCAGCAACA 60.677 57.895 0.00 0.00 0.00 3.33
95 96 1.035932 GCCATCTCCAGCAGCAACAT 61.036 55.000 0.00 0.00 0.00 2.71
96 97 1.022735 CCATCTCCAGCAGCAACATC 58.977 55.000 0.00 0.00 0.00 3.06
97 98 1.680860 CCATCTCCAGCAGCAACATCA 60.681 52.381 0.00 0.00 0.00 3.07
98 99 2.089201 CATCTCCAGCAGCAACATCAA 58.911 47.619 0.00 0.00 0.00 2.57
99 100 1.527034 TCTCCAGCAGCAACATCAAC 58.473 50.000 0.00 0.00 0.00 3.18
100 101 1.072806 TCTCCAGCAGCAACATCAACT 59.927 47.619 0.00 0.00 0.00 3.16
101 102 1.467734 CTCCAGCAGCAACATCAACTC 59.532 52.381 0.00 0.00 0.00 3.01
102 103 0.167470 CCAGCAGCAACATCAACTCG 59.833 55.000 0.00 0.00 0.00 4.18
103 104 0.167470 CAGCAGCAACATCAACTCGG 59.833 55.000 0.00 0.00 0.00 4.63
104 105 0.957395 AGCAGCAACATCAACTCGGG 60.957 55.000 0.00 0.00 0.00 5.14
105 106 1.926511 GCAGCAACATCAACTCGGGG 61.927 60.000 0.00 0.00 0.00 5.73
106 107 0.606401 CAGCAACATCAACTCGGGGT 60.606 55.000 0.00 0.00 0.00 4.95
107 108 0.321653 AGCAACATCAACTCGGGGTC 60.322 55.000 0.00 0.00 0.00 4.46
108 109 1.635663 GCAACATCAACTCGGGGTCG 61.636 60.000 0.00 0.00 37.82 4.79
109 110 1.019278 CAACATCAACTCGGGGTCGG 61.019 60.000 0.00 0.00 36.95 4.79
110 111 2.180159 AACATCAACTCGGGGTCGGG 62.180 60.000 0.00 0.00 43.72 5.14
111 112 2.038329 ATCAACTCGGGGTCGGGA 59.962 61.111 0.00 0.00 39.73 5.14
112 113 2.058595 ATCAACTCGGGGTCGGGAG 61.059 63.158 0.00 0.00 39.73 4.30
113 114 2.800159 ATCAACTCGGGGTCGGGAGT 62.800 60.000 0.00 0.00 45.01 3.85
114 115 1.679977 CAACTCGGGGTCGGGAGTA 60.680 63.158 0.00 0.00 42.42 2.59
115 116 1.077265 AACTCGGGGTCGGGAGTAA 59.923 57.895 0.00 0.00 42.42 2.24
116 117 0.325016 AACTCGGGGTCGGGAGTAAT 60.325 55.000 0.00 0.00 42.42 1.89
117 118 1.041447 ACTCGGGGTCGGGAGTAATG 61.041 60.000 0.00 0.00 41.50 1.90
118 119 1.745320 CTCGGGGTCGGGAGTAATGG 61.745 65.000 0.00 0.00 39.73 3.16
119 120 2.509422 GGGGTCGGGAGTAATGGC 59.491 66.667 0.00 0.00 0.00 4.40
120 121 2.108362 GGGTCGGGAGTAATGGCG 59.892 66.667 0.00 0.00 0.00 5.69
121 122 2.728435 GGGTCGGGAGTAATGGCGT 61.728 63.158 0.00 0.00 0.00 5.68
122 123 1.219935 GGTCGGGAGTAATGGCGTT 59.780 57.895 0.00 0.00 0.00 4.84
123 124 0.392060 GGTCGGGAGTAATGGCGTTT 60.392 55.000 0.00 0.00 0.00 3.60
124 125 1.445871 GTCGGGAGTAATGGCGTTTT 58.554 50.000 0.00 0.00 0.00 2.43
125 126 1.395954 GTCGGGAGTAATGGCGTTTTC 59.604 52.381 0.00 0.00 0.00 2.29
127 128 0.730840 GGGAGTAATGGCGTTTTCGG 59.269 55.000 0.00 0.00 44.29 4.30
128 129 1.445871 GGAGTAATGGCGTTTTCGGT 58.554 50.000 0.00 0.00 44.29 4.69
129 130 1.808343 GGAGTAATGGCGTTTTCGGTT 59.192 47.619 0.00 0.00 44.29 4.44
130 131 2.227149 GGAGTAATGGCGTTTTCGGTTT 59.773 45.455 0.00 0.00 44.29 3.27
131 132 3.304861 GGAGTAATGGCGTTTTCGGTTTT 60.305 43.478 0.00 0.00 44.29 2.43
132 133 4.292599 GAGTAATGGCGTTTTCGGTTTTT 58.707 39.130 0.00 0.00 44.29 1.94
152 153 4.836125 TTTTTCACTGAGCTAAAGCAGG 57.164 40.909 4.54 0.00 45.16 4.85
153 154 2.479566 TTCACTGAGCTAAAGCAGGG 57.520 50.000 4.54 0.86 45.16 4.45
154 155 0.615331 TCACTGAGCTAAAGCAGGGG 59.385 55.000 4.54 0.00 45.16 4.79
155 156 0.326264 CACTGAGCTAAAGCAGGGGT 59.674 55.000 4.54 0.00 45.16 4.95
156 157 1.555075 CACTGAGCTAAAGCAGGGGTA 59.445 52.381 4.54 0.00 45.16 3.69
157 158 2.027192 CACTGAGCTAAAGCAGGGGTAA 60.027 50.000 4.54 0.00 45.16 2.85
158 159 2.642807 ACTGAGCTAAAGCAGGGGTAAA 59.357 45.455 4.54 0.00 45.16 2.01
159 160 3.073946 ACTGAGCTAAAGCAGGGGTAAAA 59.926 43.478 4.54 0.00 45.16 1.52
160 161 4.079253 CTGAGCTAAAGCAGGGGTAAAAA 58.921 43.478 4.54 0.00 45.16 1.94
180 181 4.655762 AAAAGACTTTTCAGGTTGCCTC 57.344 40.909 7.38 0.00 0.00 4.70
181 182 3.584733 AAGACTTTTCAGGTTGCCTCT 57.415 42.857 0.00 0.00 0.00 3.69
182 183 2.856222 AGACTTTTCAGGTTGCCTCTG 58.144 47.619 0.00 0.00 0.00 3.35
183 184 2.439507 AGACTTTTCAGGTTGCCTCTGA 59.560 45.455 0.00 0.00 39.24 3.27
184 185 3.073650 AGACTTTTCAGGTTGCCTCTGAT 59.926 43.478 0.00 0.00 40.46 2.90
185 186 3.152341 ACTTTTCAGGTTGCCTCTGATG 58.848 45.455 0.00 0.00 40.46 3.07
186 187 2.205022 TTTCAGGTTGCCTCTGATGG 57.795 50.000 0.00 0.00 40.46 3.51
187 188 1.067295 TTCAGGTTGCCTCTGATGGT 58.933 50.000 0.00 0.00 40.46 3.55
188 189 1.951209 TCAGGTTGCCTCTGATGGTA 58.049 50.000 0.00 0.00 36.46 3.25
189 190 2.481441 TCAGGTTGCCTCTGATGGTAT 58.519 47.619 0.00 0.00 36.46 2.73
190 191 2.846206 TCAGGTTGCCTCTGATGGTATT 59.154 45.455 0.00 0.00 36.46 1.89
191 192 4.037222 TCAGGTTGCCTCTGATGGTATTA 58.963 43.478 0.00 0.00 36.46 0.98
192 193 4.101585 TCAGGTTGCCTCTGATGGTATTAG 59.898 45.833 0.00 0.00 36.46 1.73
193 194 4.040755 AGGTTGCCTCTGATGGTATTAGT 58.959 43.478 0.00 0.00 0.00 2.24
194 195 4.130118 GGTTGCCTCTGATGGTATTAGTG 58.870 47.826 0.00 0.00 0.00 2.74
195 196 4.130118 GTTGCCTCTGATGGTATTAGTGG 58.870 47.826 0.00 0.00 33.96 4.00
196 197 2.772287 GCCTCTGATGGTATTAGTGGC 58.228 52.381 9.80 9.80 44.51 5.01
197 198 2.551071 GCCTCTGATGGTATTAGTGGCC 60.551 54.545 12.82 0.00 44.80 5.36
198 199 2.705658 CCTCTGATGGTATTAGTGGCCA 59.294 50.000 0.00 0.00 36.64 5.36
199 200 3.136443 CCTCTGATGGTATTAGTGGCCAA 59.864 47.826 7.24 0.00 35.74 4.52
200 201 4.385199 CCTCTGATGGTATTAGTGGCCAAA 60.385 45.833 7.24 0.00 35.74 3.28
201 202 5.186256 TCTGATGGTATTAGTGGCCAAAA 57.814 39.130 7.24 5.44 35.74 2.44
202 203 4.947388 TCTGATGGTATTAGTGGCCAAAAC 59.053 41.667 7.24 0.82 35.74 2.43
203 204 4.929479 TGATGGTATTAGTGGCCAAAACT 58.071 39.130 7.24 2.51 35.74 2.66
204 205 4.704540 TGATGGTATTAGTGGCCAAAACTG 59.295 41.667 7.24 0.00 35.74 3.16
205 206 4.107127 TGGTATTAGTGGCCAAAACTGT 57.893 40.909 7.24 0.00 0.00 3.55
206 207 4.076394 TGGTATTAGTGGCCAAAACTGTC 58.924 43.478 7.24 0.00 0.00 3.51
207 208 4.076394 GGTATTAGTGGCCAAAACTGTCA 58.924 43.478 7.24 0.00 0.00 3.58
208 209 4.156008 GGTATTAGTGGCCAAAACTGTCAG 59.844 45.833 7.24 0.00 0.00 3.51
209 210 3.569194 TTAGTGGCCAAAACTGTCAGA 57.431 42.857 7.24 0.00 0.00 3.27
210 211 2.435372 AGTGGCCAAAACTGTCAGAA 57.565 45.000 7.24 0.00 0.00 3.02
211 212 2.733956 AGTGGCCAAAACTGTCAGAAA 58.266 42.857 7.24 0.00 0.00 2.52
212 213 3.299503 AGTGGCCAAAACTGTCAGAAAT 58.700 40.909 7.24 0.00 0.00 2.17
213 214 3.068590 AGTGGCCAAAACTGTCAGAAATG 59.931 43.478 7.24 2.00 0.00 2.32
214 215 3.030291 TGGCCAAAACTGTCAGAAATGT 58.970 40.909 0.61 0.00 0.00 2.71
215 216 3.068024 TGGCCAAAACTGTCAGAAATGTC 59.932 43.478 0.61 0.00 0.00 3.06
216 217 3.068024 GGCCAAAACTGTCAGAAATGTCA 59.932 43.478 6.91 0.00 0.00 3.58
217 218 4.262164 GGCCAAAACTGTCAGAAATGTCAT 60.262 41.667 6.91 0.00 0.00 3.06
218 219 5.291971 GCCAAAACTGTCAGAAATGTCATT 58.708 37.500 6.91 0.00 0.00 2.57
219 220 5.176223 GCCAAAACTGTCAGAAATGTCATTG 59.824 40.000 6.91 0.47 0.00 2.82
220 221 6.506147 CCAAAACTGTCAGAAATGTCATTGA 58.494 36.000 6.91 0.00 0.00 2.57
221 222 6.979817 CCAAAACTGTCAGAAATGTCATTGAA 59.020 34.615 6.91 0.00 0.00 2.69
222 223 7.168637 CCAAAACTGTCAGAAATGTCATTGAAG 59.831 37.037 6.91 0.00 0.00 3.02
223 224 5.954296 ACTGTCAGAAATGTCATTGAAGG 57.046 39.130 6.91 0.00 0.00 3.46
224 225 5.624159 ACTGTCAGAAATGTCATTGAAGGA 58.376 37.500 6.91 0.00 0.00 3.36
225 226 6.064060 ACTGTCAGAAATGTCATTGAAGGAA 58.936 36.000 6.91 0.00 0.00 3.36
226 227 6.016777 ACTGTCAGAAATGTCATTGAAGGAAC 60.017 38.462 6.91 0.00 0.00 3.62
227 228 5.827267 TGTCAGAAATGTCATTGAAGGAACA 59.173 36.000 0.00 0.00 0.00 3.18
228 229 6.320926 TGTCAGAAATGTCATTGAAGGAACAA 59.679 34.615 0.00 0.00 0.00 2.83
229 230 7.147932 TGTCAGAAATGTCATTGAAGGAACAAA 60.148 33.333 0.00 0.00 33.44 2.83
230 231 7.706179 GTCAGAAATGTCATTGAAGGAACAAAA 59.294 33.333 0.00 0.00 33.44 2.44
231 232 8.423349 TCAGAAATGTCATTGAAGGAACAAAAT 58.577 29.630 0.00 0.00 33.44 1.82
232 233 8.492748 CAGAAATGTCATTGAAGGAACAAAATG 58.507 33.333 0.00 0.00 33.44 2.32
233 234 8.423349 AGAAATGTCATTGAAGGAACAAAATGA 58.577 29.630 0.00 0.00 36.85 2.57
234 235 8.961294 AAATGTCATTGAAGGAACAAAATGAA 57.039 26.923 0.00 0.00 39.89 2.57
235 236 8.597662 AATGTCATTGAAGGAACAAAATGAAG 57.402 30.769 0.00 0.00 39.89 3.02
236 237 7.111247 TGTCATTGAAGGAACAAAATGAAGT 57.889 32.000 0.00 0.00 39.89 3.01
237 238 7.555087 TGTCATTGAAGGAACAAAATGAAGTT 58.445 30.769 0.00 0.00 39.89 2.66
238 239 8.040132 TGTCATTGAAGGAACAAAATGAAGTTT 58.960 29.630 0.00 0.00 39.89 2.66
239 240 9.528018 GTCATTGAAGGAACAAAATGAAGTTTA 57.472 29.630 0.00 0.00 39.89 2.01
240 241 9.748708 TCATTGAAGGAACAAAATGAAGTTTAG 57.251 29.630 0.00 0.00 36.40 1.85
241 242 8.981647 CATTGAAGGAACAAAATGAAGTTTAGG 58.018 33.333 0.00 0.00 32.86 2.69
242 243 7.654022 TGAAGGAACAAAATGAAGTTTAGGT 57.346 32.000 0.00 0.00 0.00 3.08
243 244 7.488322 TGAAGGAACAAAATGAAGTTTAGGTG 58.512 34.615 0.00 0.00 0.00 4.00
244 245 7.123547 TGAAGGAACAAAATGAAGTTTAGGTGT 59.876 33.333 0.00 0.00 0.00 4.16
245 246 7.039313 AGGAACAAAATGAAGTTTAGGTGTC 57.961 36.000 0.00 0.00 0.00 3.67
246 247 6.605594 AGGAACAAAATGAAGTTTAGGTGTCA 59.394 34.615 0.00 0.00 0.00 3.58
247 248 7.123547 AGGAACAAAATGAAGTTTAGGTGTCAA 59.876 33.333 0.00 0.00 0.00 3.18
248 249 7.762159 GGAACAAAATGAAGTTTAGGTGTCAAA 59.238 33.333 0.00 0.00 0.00 2.69
249 250 9.145865 GAACAAAATGAAGTTTAGGTGTCAAAA 57.854 29.630 0.00 0.00 0.00 2.44
250 251 9.495572 AACAAAATGAAGTTTAGGTGTCAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
251 252 9.150348 ACAAAATGAAGTTTAGGTGTCAAAAAG 57.850 29.630 0.00 0.00 0.00 2.27
252 253 8.603181 CAAAATGAAGTTTAGGTGTCAAAAAGG 58.397 33.333 0.00 0.00 0.00 3.11
253 254 7.654022 AATGAAGTTTAGGTGTCAAAAAGGA 57.346 32.000 0.00 0.00 0.00 3.36
254 255 7.654022 ATGAAGTTTAGGTGTCAAAAAGGAA 57.346 32.000 0.00 0.00 0.00 3.36
255 256 7.469537 TGAAGTTTAGGTGTCAAAAAGGAAA 57.530 32.000 0.00 0.00 0.00 3.13
256 257 7.543756 TGAAGTTTAGGTGTCAAAAAGGAAAG 58.456 34.615 0.00 0.00 0.00 2.62
257 258 7.394923 TGAAGTTTAGGTGTCAAAAAGGAAAGA 59.605 33.333 0.00 0.00 0.00 2.52
258 259 7.898014 AGTTTAGGTGTCAAAAAGGAAAGAT 57.102 32.000 0.00 0.00 0.00 2.40
259 260 8.306313 AGTTTAGGTGTCAAAAAGGAAAGATT 57.694 30.769 0.00 0.00 0.00 2.40
260 261 8.758829 AGTTTAGGTGTCAAAAAGGAAAGATTT 58.241 29.630 0.00 0.00 0.00 2.17
261 262 9.378551 GTTTAGGTGTCAAAAAGGAAAGATTTT 57.621 29.630 0.00 0.00 0.00 1.82
262 263 9.952030 TTTAGGTGTCAAAAAGGAAAGATTTTT 57.048 25.926 0.00 0.00 39.73 1.94
301 302 8.893219 AAAAAGAAGCAGATTTTAAGAAAGGG 57.107 30.769 0.00 0.00 0.00 3.95
302 303 7.603180 AAAGAAGCAGATTTTAAGAAAGGGT 57.397 32.000 0.00 0.00 0.00 4.34
303 304 6.825944 AGAAGCAGATTTTAAGAAAGGGTC 57.174 37.500 0.00 0.00 0.00 4.46
304 305 6.306987 AGAAGCAGATTTTAAGAAAGGGTCA 58.693 36.000 0.00 0.00 0.00 4.02
305 306 6.777580 AGAAGCAGATTTTAAGAAAGGGTCAA 59.222 34.615 0.00 0.00 0.00 3.18
306 307 6.976934 AGCAGATTTTAAGAAAGGGTCAAA 57.023 33.333 0.00 0.00 0.00 2.69
307 308 7.544804 AGCAGATTTTAAGAAAGGGTCAAAT 57.455 32.000 0.00 0.00 0.00 2.32
308 309 8.650143 AGCAGATTTTAAGAAAGGGTCAAATA 57.350 30.769 0.00 0.00 0.00 1.40
309 310 9.088987 AGCAGATTTTAAGAAAGGGTCAAATAA 57.911 29.630 0.00 0.00 0.00 1.40
310 311 9.358872 GCAGATTTTAAGAAAGGGTCAAATAAG 57.641 33.333 0.00 0.00 0.00 1.73
311 312 9.860898 CAGATTTTAAGAAAGGGTCAAATAAGG 57.139 33.333 0.00 0.00 0.00 2.69
312 313 9.822727 AGATTTTAAGAAAGGGTCAAATAAGGA 57.177 29.630 0.00 0.00 0.00 3.36
317 318 9.822727 TTAAGAAAGGGTCAAATAAGGAATTCT 57.177 29.630 5.23 0.00 0.00 2.40
318 319 7.946381 AGAAAGGGTCAAATAAGGAATTCTC 57.054 36.000 5.23 0.00 0.00 2.87
319 320 7.703755 AGAAAGGGTCAAATAAGGAATTCTCT 58.296 34.615 5.23 0.00 0.00 3.10
320 321 7.831690 AGAAAGGGTCAAATAAGGAATTCTCTC 59.168 37.037 5.23 0.00 0.00 3.20
336 337 9.081997 GGAATTCTCTCTATAATATGCGAACTG 57.918 37.037 5.23 0.00 0.00 3.16
358 359 5.711698 TGTTTTCCTTTTTCATAGGACCCT 58.288 37.500 0.00 0.00 41.41 4.34
492 495 7.227156 AGAAACAATGACTGATACTTCACCTT 58.773 34.615 0.00 0.00 0.00 3.50
493 496 8.375506 AGAAACAATGACTGATACTTCACCTTA 58.624 33.333 0.00 0.00 0.00 2.69
657 2934 0.327924 TGAATTGGTGCCCATCGTCT 59.672 50.000 0.00 0.00 31.53 4.18
873 3153 5.063880 GTGTGTACCTTGGTCTTTGAGAAT 58.936 41.667 0.00 0.00 0.00 2.40
909 3189 6.566141 AGTAAACCAAGCGTAAATTTTGTGT 58.434 32.000 0.00 0.00 0.00 3.72
935 3215 2.840651 CCGGCCCAAGATATATCTCCTT 59.159 50.000 15.62 0.00 35.76 3.36
959 3239 0.767375 AAGCTGGTCATCACCTGTGT 59.233 50.000 0.00 0.00 44.17 3.72
1159 3463 2.049433 AGTTCAACCTCCGCGACG 60.049 61.111 8.23 0.00 0.00 5.12
1237 19770 2.358369 TCGACCTCGACACGCTCT 60.358 61.111 0.00 0.00 44.22 4.09
1246 19779 0.318360 CGACACGCTCTGTAACCACA 60.318 55.000 0.00 0.00 31.03 4.17
1323 19904 1.201647 CACGTGACGTACCTCCTGAAT 59.798 52.381 11.43 0.00 38.32 2.57
1407 19993 0.617820 ACCTCGGCCAACAGGTCTAT 60.618 55.000 11.55 0.00 38.83 1.98
1476 20062 2.027024 CGCATCGCCGCTAACCTA 59.973 61.111 0.00 0.00 0.00 3.08
1569 21845 1.770294 TTTTGAAGGACGGGCAGTTT 58.230 45.000 0.00 0.00 0.00 2.66
1590 21866 4.475527 GGCAACGTGGAGAGGTTT 57.524 55.556 0.00 0.00 0.00 3.27
1599 21875 0.040646 TGGAGAGGTTTCGAGGCCTA 59.959 55.000 4.42 0.00 34.81 3.93
1634 21921 3.928727 ACATTAGTTCTTCGACGGTCA 57.071 42.857 9.10 0.00 0.00 4.02
1646 21935 1.583856 CGACGGTCAATCAGAATCACG 59.416 52.381 9.10 0.00 0.00 4.35
1714 22627 4.451150 CCGCCGCCTCTACTTGCA 62.451 66.667 0.00 0.00 0.00 4.08
2052 23560 1.609208 GAACAGGAGCCAACACATGT 58.391 50.000 0.00 0.00 32.69 3.21
2078 23586 1.528776 GAGCCGAGGTAGATCCCGT 60.529 63.158 0.00 0.00 36.75 5.28
2087 23595 0.824759 GTAGATCCCGTTGCAGGAGT 59.175 55.000 0.00 0.00 36.67 3.85
2092 23600 0.251916 TCCCGTTGCAGGAGTATTGG 59.748 55.000 0.00 0.00 0.00 3.16
2182 26514 0.636647 TGCCCTCTAGTCCTGGATCA 59.363 55.000 0.00 0.00 0.00 2.92
2185 26517 2.492567 GCCCTCTAGTCCTGGATCAGAT 60.493 54.545 0.00 0.00 32.44 2.90
2203 26535 2.427453 AGATGACACTACACCATCGACC 59.573 50.000 0.00 0.00 40.99 4.79
2242 26574 1.954362 GAGCTCGCATGACCAGGACT 61.954 60.000 0.00 0.00 0.00 3.85
2288 26620 2.282674 ACGACTACCGCACCAGGA 60.283 61.111 0.00 0.00 43.32 3.86
2291 26623 1.874345 CGACTACCGCACCAGGAAGT 61.874 60.000 0.00 0.00 34.73 3.01
2304 26636 2.649034 GAAGTCGCACCACCGAGA 59.351 61.111 0.00 0.00 37.99 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.528129 AGCTAGGCTCAAACAAGCAC 58.472 50.000 7.39 0.00 44.35 4.40
1 2 2.276732 AAGCTAGGCTCAAACAAGCA 57.723 45.000 7.39 0.00 44.35 3.91
3 4 2.294233 TGCAAAGCTAGGCTCAAACAAG 59.706 45.455 10.46 0.00 38.25 3.16
4 5 2.034558 GTGCAAAGCTAGGCTCAAACAA 59.965 45.455 10.46 0.00 38.25 2.83
5 6 1.608590 GTGCAAAGCTAGGCTCAAACA 59.391 47.619 10.46 0.00 38.25 2.83
6 7 1.400242 CGTGCAAAGCTAGGCTCAAAC 60.400 52.381 10.46 0.60 38.25 2.93
7 8 0.874390 CGTGCAAAGCTAGGCTCAAA 59.126 50.000 10.46 0.00 38.25 2.69
8 9 0.250295 ACGTGCAAAGCTAGGCTCAA 60.250 50.000 10.46 0.00 38.25 3.02
9 10 0.606096 TACGTGCAAAGCTAGGCTCA 59.394 50.000 10.46 0.00 38.25 4.26
10 11 1.000145 GTACGTGCAAAGCTAGGCTC 59.000 55.000 10.46 6.35 38.25 4.70
11 12 0.736325 CGTACGTGCAAAGCTAGGCT 60.736 55.000 7.22 0.00 42.56 4.58
12 13 1.708027 CGTACGTGCAAAGCTAGGC 59.292 57.895 7.22 2.72 0.00 3.93
13 14 1.011968 TGCGTACGTGCAAAGCTAGG 61.012 55.000 17.90 0.00 43.02 3.02
14 15 2.441023 TGCGTACGTGCAAAGCTAG 58.559 52.632 17.90 0.00 43.02 3.42
15 16 4.657502 TGCGTACGTGCAAAGCTA 57.342 50.000 17.90 0.00 43.02 3.32
22 23 2.399611 GCTGGAATGCGTACGTGC 59.600 61.111 17.90 2.82 0.00 5.34
30 31 2.682856 TGGTTTTAGATCGCTGGAATGC 59.317 45.455 0.00 0.00 0.00 3.56
31 32 4.155826 TGTTGGTTTTAGATCGCTGGAATG 59.844 41.667 0.00 0.00 0.00 2.67
32 33 4.156008 GTGTTGGTTTTAGATCGCTGGAAT 59.844 41.667 0.00 0.00 0.00 3.01
33 34 3.500680 GTGTTGGTTTTAGATCGCTGGAA 59.499 43.478 0.00 0.00 0.00 3.53
34 35 3.071479 GTGTTGGTTTTAGATCGCTGGA 58.929 45.455 0.00 0.00 0.00 3.86
35 36 2.161609 GGTGTTGGTTTTAGATCGCTGG 59.838 50.000 0.00 0.00 0.00 4.85
36 37 2.811431 TGGTGTTGGTTTTAGATCGCTG 59.189 45.455 0.00 0.00 0.00 5.18
37 38 3.134574 TGGTGTTGGTTTTAGATCGCT 57.865 42.857 0.00 0.00 0.00 4.93
38 39 3.252458 ACTTGGTGTTGGTTTTAGATCGC 59.748 43.478 0.00 0.00 0.00 4.58
39 40 4.783242 CACTTGGTGTTGGTTTTAGATCG 58.217 43.478 0.00 0.00 0.00 3.69
40 41 4.546570 GCACTTGGTGTTGGTTTTAGATC 58.453 43.478 0.00 0.00 35.75 2.75
41 42 3.004315 CGCACTTGGTGTTGGTTTTAGAT 59.996 43.478 0.00 0.00 35.75 1.98
42 43 2.356382 CGCACTTGGTGTTGGTTTTAGA 59.644 45.455 0.00 0.00 35.75 2.10
43 44 2.356382 TCGCACTTGGTGTTGGTTTTAG 59.644 45.455 0.00 0.00 35.75 1.85
44 45 2.356382 CTCGCACTTGGTGTTGGTTTTA 59.644 45.455 0.00 0.00 35.75 1.52
45 46 1.134175 CTCGCACTTGGTGTTGGTTTT 59.866 47.619 0.00 0.00 35.75 2.43
46 47 0.738389 CTCGCACTTGGTGTTGGTTT 59.262 50.000 0.00 0.00 35.75 3.27
47 48 1.101049 CCTCGCACTTGGTGTTGGTT 61.101 55.000 0.00 0.00 35.75 3.67
48 49 1.525995 CCTCGCACTTGGTGTTGGT 60.526 57.895 0.00 0.00 35.75 3.67
49 50 0.606401 ATCCTCGCACTTGGTGTTGG 60.606 55.000 0.00 0.86 35.75 3.77
50 51 1.197721 GAATCCTCGCACTTGGTGTTG 59.802 52.381 0.00 0.00 35.75 3.33
51 52 1.523758 GAATCCTCGCACTTGGTGTT 58.476 50.000 0.00 0.00 35.75 3.32
52 53 0.670546 CGAATCCTCGCACTTGGTGT 60.671 55.000 0.00 0.00 38.45 4.16
53 54 2.081526 CGAATCCTCGCACTTGGTG 58.918 57.895 0.00 0.00 38.45 4.17
54 55 4.598257 CGAATCCTCGCACTTGGT 57.402 55.556 0.00 0.00 38.45 3.67
63 64 4.256180 ATGGCGGGGCGAATCCTC 62.256 66.667 0.00 0.00 34.39 3.71
64 65 4.256180 GATGGCGGGGCGAATCCT 62.256 66.667 0.00 0.00 34.39 3.24
65 66 4.256180 AGATGGCGGGGCGAATCC 62.256 66.667 0.00 0.00 0.00 3.01
66 67 2.666526 GAGATGGCGGGGCGAATC 60.667 66.667 0.00 0.00 0.00 2.52
67 68 4.256180 GGAGATGGCGGGGCGAAT 62.256 66.667 0.00 0.00 0.00 3.34
72 73 4.559063 CTGCTGGAGATGGCGGGG 62.559 72.222 0.00 0.00 0.00 5.73
74 75 3.982316 TTGCTGCTGGAGATGGCGG 62.982 63.158 0.00 0.00 37.83 6.13
75 76 2.437180 TTGCTGCTGGAGATGGCG 60.437 61.111 0.00 0.00 0.00 5.69
76 77 1.035932 ATGTTGCTGCTGGAGATGGC 61.036 55.000 0.00 0.00 0.00 4.40
77 78 1.022735 GATGTTGCTGCTGGAGATGG 58.977 55.000 0.00 0.00 0.00 3.51
78 79 1.746470 TGATGTTGCTGCTGGAGATG 58.254 50.000 0.00 0.00 0.00 2.90
79 80 2.089980 GTTGATGTTGCTGCTGGAGAT 58.910 47.619 0.00 0.00 0.00 2.75
80 81 1.072806 AGTTGATGTTGCTGCTGGAGA 59.927 47.619 0.00 0.00 0.00 3.71
81 82 1.467734 GAGTTGATGTTGCTGCTGGAG 59.532 52.381 0.00 0.00 0.00 3.86
82 83 1.527034 GAGTTGATGTTGCTGCTGGA 58.473 50.000 0.00 0.00 0.00 3.86
83 84 0.167470 CGAGTTGATGTTGCTGCTGG 59.833 55.000 0.00 0.00 0.00 4.85
84 85 0.167470 CCGAGTTGATGTTGCTGCTG 59.833 55.000 0.00 0.00 0.00 4.41
85 86 0.957395 CCCGAGTTGATGTTGCTGCT 60.957 55.000 0.00 0.00 0.00 4.24
86 87 1.503542 CCCGAGTTGATGTTGCTGC 59.496 57.895 0.00 0.00 0.00 5.25
87 88 0.606401 ACCCCGAGTTGATGTTGCTG 60.606 55.000 0.00 0.00 0.00 4.41
88 89 0.321653 GACCCCGAGTTGATGTTGCT 60.322 55.000 0.00 0.00 0.00 3.91
89 90 1.635663 CGACCCCGAGTTGATGTTGC 61.636 60.000 0.00 0.00 38.22 4.17
90 91 1.019278 CCGACCCCGAGTTGATGTTG 61.019 60.000 0.00 0.00 38.22 3.33
91 92 1.295423 CCGACCCCGAGTTGATGTT 59.705 57.895 0.00 0.00 38.22 2.71
92 93 2.656069 CCCGACCCCGAGTTGATGT 61.656 63.158 0.00 0.00 38.22 3.06
93 94 2.186903 CCCGACCCCGAGTTGATG 59.813 66.667 0.00 0.00 38.22 3.07
94 95 2.038329 TCCCGACCCCGAGTTGAT 59.962 61.111 0.00 0.00 38.22 2.57
95 96 2.141011 TACTCCCGACCCCGAGTTGA 62.141 60.000 0.00 0.00 39.92 3.18
96 97 1.252904 TTACTCCCGACCCCGAGTTG 61.253 60.000 0.00 0.00 39.92 3.16
97 98 0.325016 ATTACTCCCGACCCCGAGTT 60.325 55.000 0.00 0.00 39.92 3.01
98 99 1.041447 CATTACTCCCGACCCCGAGT 61.041 60.000 0.00 0.00 42.03 4.18
99 100 1.740285 CATTACTCCCGACCCCGAG 59.260 63.158 0.00 0.00 38.22 4.63
100 101 1.759299 CCATTACTCCCGACCCCGA 60.759 63.158 0.00 0.00 38.22 5.14
101 102 2.819550 CCATTACTCCCGACCCCG 59.180 66.667 0.00 0.00 0.00 5.73
102 103 2.509422 GCCATTACTCCCGACCCC 59.491 66.667 0.00 0.00 0.00 4.95
103 104 2.108362 CGCCATTACTCCCGACCC 59.892 66.667 0.00 0.00 0.00 4.46
104 105 0.392060 AAACGCCATTACTCCCGACC 60.392 55.000 0.00 0.00 0.00 4.79
105 106 1.395954 GAAAACGCCATTACTCCCGAC 59.604 52.381 0.00 0.00 0.00 4.79
106 107 1.729284 GAAAACGCCATTACTCCCGA 58.271 50.000 0.00 0.00 0.00 5.14
107 108 0.372334 CGAAAACGCCATTACTCCCG 59.628 55.000 0.00 0.00 0.00 5.14
108 109 0.730840 CCGAAAACGCCATTACTCCC 59.269 55.000 0.00 0.00 0.00 4.30
109 110 1.445871 ACCGAAAACGCCATTACTCC 58.554 50.000 0.00 0.00 0.00 3.85
110 111 3.547649 AAACCGAAAACGCCATTACTC 57.452 42.857 0.00 0.00 0.00 2.59
111 112 3.994204 AAAACCGAAAACGCCATTACT 57.006 38.095 0.00 0.00 0.00 2.24
131 132 3.569701 CCCTGCTTTAGCTCAGTGAAAAA 59.430 43.478 3.10 0.00 42.66 1.94
132 133 3.149196 CCCTGCTTTAGCTCAGTGAAAA 58.851 45.455 3.10 0.00 42.66 2.29
133 134 2.553028 CCCCTGCTTTAGCTCAGTGAAA 60.553 50.000 3.10 0.00 42.66 2.69
134 135 1.003580 CCCCTGCTTTAGCTCAGTGAA 59.996 52.381 3.10 0.00 42.66 3.18
135 136 0.615331 CCCCTGCTTTAGCTCAGTGA 59.385 55.000 3.10 0.00 42.66 3.41
136 137 0.326264 ACCCCTGCTTTAGCTCAGTG 59.674 55.000 3.10 0.00 42.66 3.66
137 138 1.952621 TACCCCTGCTTTAGCTCAGT 58.047 50.000 3.10 0.00 42.66 3.41
138 139 3.350219 TTTACCCCTGCTTTAGCTCAG 57.650 47.619 3.10 0.00 42.66 3.35
139 140 3.799432 TTTTACCCCTGCTTTAGCTCA 57.201 42.857 3.10 0.00 42.66 4.26
158 159 4.711846 AGAGGCAACCTGAAAAGTCTTTTT 59.288 37.500 11.80 0.00 34.86 1.94
159 160 4.098501 CAGAGGCAACCTGAAAAGTCTTTT 59.901 41.667 10.38 10.38 37.13 2.27
160 161 3.633986 CAGAGGCAACCTGAAAAGTCTTT 59.366 43.478 0.00 0.00 37.13 2.52
161 162 3.117888 TCAGAGGCAACCTGAAAAGTCTT 60.118 43.478 0.00 0.00 39.79 3.01
162 163 2.439507 TCAGAGGCAACCTGAAAAGTCT 59.560 45.455 0.00 0.00 39.79 3.24
163 164 2.851195 TCAGAGGCAACCTGAAAAGTC 58.149 47.619 0.00 0.00 39.79 3.01
164 165 3.152341 CATCAGAGGCAACCTGAAAAGT 58.848 45.455 8.02 0.00 43.82 2.66
165 166 2.490903 CCATCAGAGGCAACCTGAAAAG 59.509 50.000 8.02 3.15 43.82 2.27
166 167 2.158475 ACCATCAGAGGCAACCTGAAAA 60.158 45.455 8.02 0.00 43.82 2.29
167 168 1.425066 ACCATCAGAGGCAACCTGAAA 59.575 47.619 8.02 0.00 43.82 2.69
168 169 1.067295 ACCATCAGAGGCAACCTGAA 58.933 50.000 8.02 0.00 43.82 3.02
169 170 1.951209 TACCATCAGAGGCAACCTGA 58.049 50.000 6.70 6.70 44.42 3.86
170 171 3.287867 AATACCATCAGAGGCAACCTG 57.712 47.619 0.00 0.00 31.76 4.00
171 172 4.040755 ACTAATACCATCAGAGGCAACCT 58.959 43.478 0.00 0.00 36.03 3.50
172 173 4.130118 CACTAATACCATCAGAGGCAACC 58.870 47.826 0.00 0.00 37.17 3.77
173 174 4.130118 CCACTAATACCATCAGAGGCAAC 58.870 47.826 0.00 0.00 0.00 4.17
174 175 3.433598 GCCACTAATACCATCAGAGGCAA 60.434 47.826 4.68 0.00 43.18 4.52
175 176 2.104792 GCCACTAATACCATCAGAGGCA 59.895 50.000 4.68 0.00 43.18 4.75
176 177 2.551071 GGCCACTAATACCATCAGAGGC 60.551 54.545 0.00 0.00 43.02 4.70
177 178 2.705658 TGGCCACTAATACCATCAGAGG 59.294 50.000 0.00 0.00 0.00 3.69
178 179 4.422073 TTGGCCACTAATACCATCAGAG 57.578 45.455 3.88 0.00 32.39 3.35
179 180 4.853468 TTTGGCCACTAATACCATCAGA 57.147 40.909 3.88 0.00 32.39 3.27
180 181 4.949856 AGTTTTGGCCACTAATACCATCAG 59.050 41.667 3.88 0.00 32.39 2.90
181 182 4.704540 CAGTTTTGGCCACTAATACCATCA 59.295 41.667 3.88 0.00 32.39 3.07
182 183 4.705023 ACAGTTTTGGCCACTAATACCATC 59.295 41.667 3.88 0.00 32.39 3.51
183 184 4.672899 ACAGTTTTGGCCACTAATACCAT 58.327 39.130 3.88 0.00 32.39 3.55
184 185 4.076394 GACAGTTTTGGCCACTAATACCA 58.924 43.478 3.88 0.00 0.00 3.25
185 186 4.076394 TGACAGTTTTGGCCACTAATACC 58.924 43.478 3.88 0.00 0.00 2.73
186 187 5.001232 TCTGACAGTTTTGGCCACTAATAC 58.999 41.667 3.88 0.00 0.00 1.89
187 188 5.235850 TCTGACAGTTTTGGCCACTAATA 57.764 39.130 3.88 0.00 0.00 0.98
188 189 4.098914 TCTGACAGTTTTGGCCACTAAT 57.901 40.909 3.88 0.00 0.00 1.73
189 190 3.569194 TCTGACAGTTTTGGCCACTAA 57.431 42.857 3.88 0.00 0.00 2.24
190 191 3.569194 TTCTGACAGTTTTGGCCACTA 57.431 42.857 3.88 0.00 0.00 2.74
191 192 2.435372 TTCTGACAGTTTTGGCCACT 57.565 45.000 3.88 0.00 0.00 4.00
192 193 3.181476 ACATTTCTGACAGTTTTGGCCAC 60.181 43.478 3.88 0.00 0.00 5.01
193 194 3.030291 ACATTTCTGACAGTTTTGGCCA 58.970 40.909 0.00 0.00 0.00 5.36
194 195 3.068024 TGACATTTCTGACAGTTTTGGCC 59.932 43.478 0.00 0.00 0.00 5.36
195 196 4.305989 TGACATTTCTGACAGTTTTGGC 57.694 40.909 1.59 1.65 0.00 4.52
196 197 6.506147 TCAATGACATTTCTGACAGTTTTGG 58.494 36.000 1.59 0.00 30.76 3.28
197 198 7.168637 CCTTCAATGACATTTCTGACAGTTTTG 59.831 37.037 1.59 1.54 30.76 2.44
198 199 7.068593 TCCTTCAATGACATTTCTGACAGTTTT 59.931 33.333 1.59 0.00 30.76 2.43
199 200 6.547141 TCCTTCAATGACATTTCTGACAGTTT 59.453 34.615 1.59 0.00 30.76 2.66
200 201 6.064060 TCCTTCAATGACATTTCTGACAGTT 58.936 36.000 1.59 0.00 30.76 3.16
201 202 5.624159 TCCTTCAATGACATTTCTGACAGT 58.376 37.500 1.59 0.00 30.76 3.55
202 203 6.016860 TGTTCCTTCAATGACATTTCTGACAG 60.017 38.462 0.00 0.00 30.76 3.51
203 204 5.827267 TGTTCCTTCAATGACATTTCTGACA 59.173 36.000 0.00 0.00 0.00 3.58
204 205 6.317789 TGTTCCTTCAATGACATTTCTGAC 57.682 37.500 0.00 0.00 0.00 3.51
205 206 6.957920 TTGTTCCTTCAATGACATTTCTGA 57.042 33.333 0.00 0.00 0.00 3.27
206 207 8.492748 CATTTTGTTCCTTCAATGACATTTCTG 58.507 33.333 0.00 0.00 0.00 3.02
207 208 8.423349 TCATTTTGTTCCTTCAATGACATTTCT 58.577 29.630 0.00 0.00 32.01 2.52
208 209 8.592105 TCATTTTGTTCCTTCAATGACATTTC 57.408 30.769 0.00 0.00 32.01 2.17
209 210 8.961294 TTCATTTTGTTCCTTCAATGACATTT 57.039 26.923 0.00 0.00 35.78 2.32
210 211 8.206189 ACTTCATTTTGTTCCTTCAATGACATT 58.794 29.630 0.00 0.00 35.78 2.71
211 212 7.729116 ACTTCATTTTGTTCCTTCAATGACAT 58.271 30.769 0.00 0.00 35.78 3.06
212 213 7.111247 ACTTCATTTTGTTCCTTCAATGACA 57.889 32.000 0.00 0.00 35.78 3.58
213 214 8.424274 AAACTTCATTTTGTTCCTTCAATGAC 57.576 30.769 0.00 0.00 35.78 3.06
214 215 9.748708 CTAAACTTCATTTTGTTCCTTCAATGA 57.251 29.630 0.00 0.00 34.54 2.57
215 216 8.981647 CCTAAACTTCATTTTGTTCCTTCAATG 58.018 33.333 0.00 0.00 0.00 2.82
216 217 8.704668 ACCTAAACTTCATTTTGTTCCTTCAAT 58.295 29.630 0.00 0.00 0.00 2.57
217 218 7.978975 CACCTAAACTTCATTTTGTTCCTTCAA 59.021 33.333 0.00 0.00 0.00 2.69
218 219 7.123547 ACACCTAAACTTCATTTTGTTCCTTCA 59.876 33.333 0.00 0.00 0.00 3.02
219 220 7.489160 ACACCTAAACTTCATTTTGTTCCTTC 58.511 34.615 0.00 0.00 0.00 3.46
220 221 7.123547 TGACACCTAAACTTCATTTTGTTCCTT 59.876 33.333 0.00 0.00 0.00 3.36
221 222 6.605594 TGACACCTAAACTTCATTTTGTTCCT 59.394 34.615 0.00 0.00 0.00 3.36
222 223 6.801575 TGACACCTAAACTTCATTTTGTTCC 58.198 36.000 0.00 0.00 0.00 3.62
223 224 8.696410 TTTGACACCTAAACTTCATTTTGTTC 57.304 30.769 0.00 0.00 0.00 3.18
224 225 9.495572 TTTTTGACACCTAAACTTCATTTTGTT 57.504 25.926 0.00 0.00 0.00 2.83
225 226 9.150348 CTTTTTGACACCTAAACTTCATTTTGT 57.850 29.630 0.00 0.00 0.00 2.83
226 227 8.603181 CCTTTTTGACACCTAAACTTCATTTTG 58.397 33.333 0.00 0.00 0.00 2.44
227 228 8.536175 TCCTTTTTGACACCTAAACTTCATTTT 58.464 29.630 0.00 0.00 0.00 1.82
228 229 8.073467 TCCTTTTTGACACCTAAACTTCATTT 57.927 30.769 0.00 0.00 0.00 2.32
229 230 7.654022 TCCTTTTTGACACCTAAACTTCATT 57.346 32.000 0.00 0.00 0.00 2.57
230 231 7.654022 TTCCTTTTTGACACCTAAACTTCAT 57.346 32.000 0.00 0.00 0.00 2.57
231 232 7.394923 TCTTTCCTTTTTGACACCTAAACTTCA 59.605 33.333 0.00 0.00 0.00 3.02
232 233 7.768240 TCTTTCCTTTTTGACACCTAAACTTC 58.232 34.615 0.00 0.00 0.00 3.01
233 234 7.712204 TCTTTCCTTTTTGACACCTAAACTT 57.288 32.000 0.00 0.00 0.00 2.66
234 235 7.898014 ATCTTTCCTTTTTGACACCTAAACT 57.102 32.000 0.00 0.00 0.00 2.66
235 236 8.942338 AAATCTTTCCTTTTTGACACCTAAAC 57.058 30.769 0.00 0.00 0.00 2.01
236 237 9.952030 AAAAATCTTTCCTTTTTGACACCTAAA 57.048 25.926 0.00 0.00 35.18 1.85
276 277 8.486210 ACCCTTTCTTAAAATCTGCTTCTTTTT 58.514 29.630 0.00 0.00 0.00 1.94
277 278 8.023021 ACCCTTTCTTAAAATCTGCTTCTTTT 57.977 30.769 0.00 0.00 0.00 2.27
278 279 7.287696 TGACCCTTTCTTAAAATCTGCTTCTTT 59.712 33.333 0.00 0.00 0.00 2.52
279 280 6.777580 TGACCCTTTCTTAAAATCTGCTTCTT 59.222 34.615 0.00 0.00 0.00 2.52
280 281 6.306987 TGACCCTTTCTTAAAATCTGCTTCT 58.693 36.000 0.00 0.00 0.00 2.85
281 282 6.575162 TGACCCTTTCTTAAAATCTGCTTC 57.425 37.500 0.00 0.00 0.00 3.86
282 283 6.976934 TTGACCCTTTCTTAAAATCTGCTT 57.023 33.333 0.00 0.00 0.00 3.91
283 284 6.976934 TTTGACCCTTTCTTAAAATCTGCT 57.023 33.333 0.00 0.00 0.00 4.24
284 285 9.358872 CTTATTTGACCCTTTCTTAAAATCTGC 57.641 33.333 0.00 0.00 0.00 4.26
285 286 9.860898 CCTTATTTGACCCTTTCTTAAAATCTG 57.139 33.333 0.00 0.00 0.00 2.90
286 287 9.822727 TCCTTATTTGACCCTTTCTTAAAATCT 57.177 29.630 0.00 0.00 0.00 2.40
291 292 9.822727 AGAATTCCTTATTTGACCCTTTCTTAA 57.177 29.630 0.65 0.00 0.00 1.85
292 293 9.462606 GAGAATTCCTTATTTGACCCTTTCTTA 57.537 33.333 0.65 0.00 0.00 2.10
293 294 8.173412 AGAGAATTCCTTATTTGACCCTTTCTT 58.827 33.333 0.65 0.00 0.00 2.52
294 295 7.703755 AGAGAATTCCTTATTTGACCCTTTCT 58.296 34.615 0.65 0.00 0.00 2.52
295 296 7.831690 AGAGAGAATTCCTTATTTGACCCTTTC 59.168 37.037 0.65 0.00 0.00 2.62
296 297 7.703755 AGAGAGAATTCCTTATTTGACCCTTT 58.296 34.615 0.65 0.00 0.00 3.11
297 298 7.277405 AGAGAGAATTCCTTATTTGACCCTT 57.723 36.000 0.65 0.00 0.00 3.95
298 299 6.899892 AGAGAGAATTCCTTATTTGACCCT 57.100 37.500 0.65 0.00 0.00 4.34
308 309 9.646427 GTTCGCATATTATAGAGAGAATTCCTT 57.354 33.333 0.65 0.00 0.00 3.36
309 310 9.030452 AGTTCGCATATTATAGAGAGAATTCCT 57.970 33.333 0.65 0.00 0.00 3.36
310 311 9.081997 CAGTTCGCATATTATAGAGAGAATTCC 57.918 37.037 0.65 0.00 0.00 3.01
311 312 9.632807 ACAGTTCGCATATTATAGAGAGAATTC 57.367 33.333 0.00 0.00 0.00 2.17
312 313 9.988815 AACAGTTCGCATATTATAGAGAGAATT 57.011 29.630 0.00 0.00 0.00 2.17
313 314 9.988815 AAACAGTTCGCATATTATAGAGAGAAT 57.011 29.630 0.00 0.00 0.00 2.40
314 315 9.817809 AAAACAGTTCGCATATTATAGAGAGAA 57.182 29.630 0.00 0.00 0.00 2.87
315 316 9.464714 GAAAACAGTTCGCATATTATAGAGAGA 57.535 33.333 0.00 0.00 0.00 3.10
316 317 8.704234 GGAAAACAGTTCGCATATTATAGAGAG 58.296 37.037 0.00 0.00 0.00 3.20
317 318 8.421784 AGGAAAACAGTTCGCATATTATAGAGA 58.578 33.333 0.00 0.00 0.00 3.10
318 319 8.594881 AGGAAAACAGTTCGCATATTATAGAG 57.405 34.615 0.00 0.00 0.00 2.43
319 320 8.958119 AAGGAAAACAGTTCGCATATTATAGA 57.042 30.769 0.00 0.00 0.00 1.98
328 329 4.442375 TGAAAAAGGAAAACAGTTCGCA 57.558 36.364 0.00 0.00 0.00 5.10
331 332 7.145985 GGTCCTATGAAAAAGGAAAACAGTTC 58.854 38.462 0.00 0.00 44.67 3.01
336 337 6.455647 CAAGGGTCCTATGAAAAAGGAAAAC 58.544 40.000 0.00 0.00 44.67 2.43
358 359 2.351706 AAAGGAAAGGGTACACGCAA 57.648 45.000 0.00 0.00 0.00 4.85
873 3153 5.584649 CGCTTGGTTTACTCCAATATCTCAA 59.415 40.000 0.00 0.00 44.94 3.02
909 3189 0.117541 TATATCTTGGGCCGGGGCTA 59.882 55.000 20.88 12.21 41.60 3.93
935 3215 2.479566 GGTGATGACCAGCTTCTTCA 57.520 50.000 0.00 0.98 42.59 3.02
959 3239 7.639534 GCAAATCTTAGAAAGGTAATAGGGGGA 60.640 40.741 0.00 0.00 0.00 4.81
991 3274 3.809234 TCGTTGCATTCATCTTGTTTCG 58.191 40.909 0.00 0.00 0.00 3.46
1177 19710 4.166011 GGCCTTGTCATCGTGCGC 62.166 66.667 0.00 0.00 0.00 6.09
1237 19770 1.606994 GGCATCGACACTGTGGTTACA 60.607 52.381 13.09 0.00 35.08 2.41
1246 19779 0.826715 AGCATGTAGGCATCGACACT 59.173 50.000 0.00 0.00 35.83 3.55
1309 19890 3.314635 GTGACGATATTCAGGAGGTACGT 59.685 47.826 0.00 0.00 35.53 3.57
1369 19954 0.034756 TAATACTGCATGGCGCCGAT 59.965 50.000 23.90 13.76 41.33 4.18
1569 21845 4.680237 CTCTCCACGTTGCCGCCA 62.680 66.667 0.00 0.00 37.70 5.69
1590 21866 2.058595 GCCCTGAAGTAGGCCTCGA 61.059 63.158 9.68 0.00 45.89 4.04
1599 21875 0.178953 AATGTTGCAGGCCCTGAAGT 60.179 50.000 16.85 0.00 32.44 3.01
1634 21921 1.394917 GTTGCTCGCGTGATTCTGATT 59.605 47.619 13.13 0.00 0.00 2.57
1646 21935 3.277742 GACCAACGACGTTGCTCGC 62.278 63.158 30.55 16.81 41.62 5.03
1952 23460 6.721318 TCCTTTGGTATCTTGTATCTTTGCT 58.279 36.000 0.00 0.00 0.00 3.91
2052 23560 3.963687 TACCTCGGCTCAGTCGCGA 62.964 63.158 3.71 3.71 0.00 5.87
2078 23586 1.305219 GCGTGCCAATACTCCTGCAA 61.305 55.000 0.00 0.00 35.16 4.08
2087 23595 0.529773 GATGACGGAGCGTGCCAATA 60.530 55.000 0.00 0.00 41.37 1.90
2182 26514 2.427453 GGTCGATGGTGTAGTGTCATCT 59.573 50.000 0.00 0.00 36.18 2.90
2185 26517 0.524414 CGGTCGATGGTGTAGTGTCA 59.476 55.000 0.00 0.00 0.00 3.58
2203 26535 4.803426 GGGTGAGCGACTCTGCCG 62.803 72.222 8.07 0.00 34.65 5.69
2242 26574 2.598787 CCCTCCCGGCAACCTGTTA 61.599 63.158 0.00 0.00 0.00 2.41
2288 26620 0.389948 GATTCTCGGTGGTGCGACTT 60.390 55.000 0.00 0.00 0.00 3.01
2291 26623 2.180769 CGATTCTCGGTGGTGCGA 59.819 61.111 0.00 0.00 36.00 5.10
2323 26655 0.310854 CACTTGCGGTTGAAGTTCCC 59.689 55.000 0.00 0.00 31.05 3.97
2510 26938 0.895559 CCCTTCTTGAAGGCGGCTTT 60.896 55.000 26.25 9.56 38.63 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.