Multiple sequence alignment - TraesCS3B01G423400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G423400 chr3B 100.000 3467 0 0 1 3467 661013353 661009887 0.000000e+00 6403.0
1 TraesCS3B01G423400 chr3B 97.036 911 27 0 2557 3467 75017052 75017962 0.000000e+00 1533.0
2 TraesCS3B01G423400 chr3B 96.813 910 29 0 2558 3467 661002739 661001830 0.000000e+00 1520.0
3 TraesCS3B01G423400 chr3B 96.597 911 30 1 2558 3467 367554773 367553863 0.000000e+00 1509.0
4 TraesCS3B01G423400 chr3B 96.590 909 31 0 2559 3467 721109591 721110499 0.000000e+00 1507.0
5 TraesCS3B01G423400 chr3B 93.296 179 10 1 1 177 774397475 774397653 2.650000e-66 263.0
6 TraesCS3B01G423400 chr5D 89.038 1569 157 8 1000 2558 376801097 376799534 0.000000e+00 1930.0
7 TraesCS3B01G423400 chr4B 96.813 910 29 0 2558 3467 450871143 450870234 0.000000e+00 1520.0
8 TraesCS3B01G423400 chr7B 96.810 909 29 0 2559 3467 483331545 483332453 0.000000e+00 1519.0
9 TraesCS3B01G423400 chr7B 78.661 239 42 7 478 711 592512935 592513169 2.160000e-32 150.0
10 TraesCS3B01G423400 chr5B 96.590 909 31 0 2559 3467 6429071 6429979 0.000000e+00 1507.0
11 TraesCS3B01G423400 chr5B 95.238 42 2 0 946 987 689994774 689994733 2.230000e-07 67.6
12 TraesCS3B01G423400 chr2B 96.593 910 30 1 2558 3467 773227993 773227085 0.000000e+00 1507.0
13 TraesCS3B01G423400 chr2B 80.519 231 38 6 485 710 453182439 453182667 1.650000e-38 171.0
14 TraesCS3B01G423400 chr2B 83.626 171 26 1 484 654 231026908 231027076 3.580000e-35 159.0
15 TraesCS3B01G423400 chr1B 96.593 910 30 1 2559 3467 104532775 104531866 0.000000e+00 1507.0
16 TraesCS3B01G423400 chr1B 97.500 40 1 0 947 986 57136426 57136387 6.210000e-08 69.4
17 TraesCS3B01G423400 chr3A 85.075 670 74 17 176 831 639150474 639151131 0.000000e+00 660.0
18 TraesCS3B01G423400 chr3A 83.152 184 26 5 499 679 730870418 730870599 2.770000e-36 163.0
19 TraesCS3B01G423400 chr3D 89.916 357 29 5 360 709 499945107 499944751 1.470000e-123 453.0
20 TraesCS3B01G423400 chr3D 93.333 180 9 3 4 180 19824165 19824344 2.650000e-66 263.0
21 TraesCS3B01G423400 chr3D 93.333 180 9 2 1 177 574612670 574612849 2.650000e-66 263.0
22 TraesCS3B01G423400 chr3D 89.205 176 16 3 734 909 499940759 499940587 2.100000e-52 217.0
23 TraesCS3B01G423400 chr3D 84.694 196 26 3 486 677 574829410 574829215 3.530000e-45 193.0
24 TraesCS3B01G423400 chr3D 83.146 178 21 5 531 707 319522650 319522481 1.670000e-33 154.0
25 TraesCS3B01G423400 chr5A 93.407 182 8 4 1 179 491517904 491517724 2.050000e-67 267.0
26 TraesCS3B01G423400 chr5A 93.333 45 1 2 955 998 394159094 394159137 8.030000e-07 65.8
27 TraesCS3B01G423400 chr7D 93.296 179 10 2 1 177 3130787 3130965 2.650000e-66 263.0
28 TraesCS3B01G423400 chr7D 93.182 44 3 0 944 987 118395578 118395621 8.030000e-07 65.8
29 TraesCS3B01G423400 chr7D 91.667 48 0 4 949 994 395220520 395220475 2.890000e-06 63.9
30 TraesCS3B01G423400 chr6B 92.818 181 11 2 1 179 8005112 8005292 9.540000e-66 261.0
31 TraesCS3B01G423400 chr2D 92.818 181 11 2 1 179 475987039 475986859 9.540000e-66 261.0
32 TraesCS3B01G423400 chr2D 92.391 184 12 2 1 182 573259835 573260018 9.540000e-66 261.0
33 TraesCS3B01G423400 chr2D 92.391 184 10 3 1 181 12353185 12353367 3.430000e-65 259.0
34 TraesCS3B01G423400 chr4A 81.683 202 34 3 478 677 105542899 105543099 7.700000e-37 165.0
35 TraesCS3B01G423400 chr7A 95.349 43 0 1 945 987 689907079 689907119 2.230000e-07 67.6
36 TraesCS3B01G423400 chr2A 95.238 42 0 2 953 994 75929281 75929242 8.030000e-07 65.8
37 TraesCS3B01G423400 chr1D 100.000 35 0 0 952 986 3577837 3577803 8.030000e-07 65.8
38 TraesCS3B01G423400 chr1A 86.792 53 6 1 937 989 434271234 434271183 1.340000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G423400 chr3B 661009887 661013353 3466 True 6403 6403 100.0000 1 3467 1 chr3B.!!$R3 3466
1 TraesCS3B01G423400 chr3B 75017052 75017962 910 False 1533 1533 97.0360 2557 3467 1 chr3B.!!$F1 910
2 TraesCS3B01G423400 chr3B 661001830 661002739 909 True 1520 1520 96.8130 2558 3467 1 chr3B.!!$R2 909
3 TraesCS3B01G423400 chr3B 367553863 367554773 910 True 1509 1509 96.5970 2558 3467 1 chr3B.!!$R1 909
4 TraesCS3B01G423400 chr3B 721109591 721110499 908 False 1507 1507 96.5900 2559 3467 1 chr3B.!!$F2 908
5 TraesCS3B01G423400 chr5D 376799534 376801097 1563 True 1930 1930 89.0380 1000 2558 1 chr5D.!!$R1 1558
6 TraesCS3B01G423400 chr4B 450870234 450871143 909 True 1520 1520 96.8130 2558 3467 1 chr4B.!!$R1 909
7 TraesCS3B01G423400 chr7B 483331545 483332453 908 False 1519 1519 96.8100 2559 3467 1 chr7B.!!$F1 908
8 TraesCS3B01G423400 chr5B 6429071 6429979 908 False 1507 1507 96.5900 2559 3467 1 chr5B.!!$F1 908
9 TraesCS3B01G423400 chr2B 773227085 773227993 908 True 1507 1507 96.5930 2558 3467 1 chr2B.!!$R1 909
10 TraesCS3B01G423400 chr1B 104531866 104532775 909 True 1507 1507 96.5930 2559 3467 1 chr1B.!!$R2 908
11 TraesCS3B01G423400 chr3A 639150474 639151131 657 False 660 660 85.0750 176 831 1 chr3A.!!$F1 655
12 TraesCS3B01G423400 chr3D 499940587 499945107 4520 True 335 453 89.5605 360 909 2 chr3D.!!$R3 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 306 0.102300 GGGCCCGAATTTGATTTCCG 59.898 55.0 5.69 0.0 0.0 4.30 F
1754 5754 0.039764 TGGAGTGAGGAGATGACGGT 59.960 55.0 0.00 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 6211 0.179140 GCAAGAGGAGCTCAGACGAG 60.179 60.0 17.19 1.49 42.66 4.18 R
3168 7171 1.189524 TCCGACAACCCCGAAGTGAT 61.190 55.0 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.858507 ACCAACCGGGACTAAAGGT 58.141 52.632 6.32 0.00 41.15 3.50
19 20 0.399075 ACCAACCGGGACTAAAGGTG 59.601 55.000 6.32 0.00 41.15 4.00
20 21 0.322187 CCAACCGGGACTAAAGGTGG 60.322 60.000 6.32 0.00 40.01 4.61
21 22 0.688487 CAACCGGGACTAAAGGTGGA 59.312 55.000 6.32 0.00 38.44 4.02
22 23 0.981943 AACCGGGACTAAAGGTGGAG 59.018 55.000 6.32 0.00 38.44 3.86
23 24 1.221021 CCGGGACTAAAGGTGGAGC 59.779 63.158 0.00 0.00 0.00 4.70
24 25 1.265454 CCGGGACTAAAGGTGGAGCT 61.265 60.000 0.00 0.00 0.00 4.09
25 26 0.175989 CGGGACTAAAGGTGGAGCTC 59.824 60.000 4.71 4.71 0.00 4.09
26 27 0.542333 GGGACTAAAGGTGGAGCTCC 59.458 60.000 26.78 26.78 0.00 4.70
27 28 1.276622 GGACTAAAGGTGGAGCTCCA 58.723 55.000 32.00 32.00 45.30 3.86
52 53 2.344500 CCACGTGGACGGCCTTTA 59.656 61.111 31.31 0.00 44.95 1.85
53 54 1.740296 CCACGTGGACGGCCTTTAG 60.740 63.158 31.31 0.00 44.95 1.85
54 55 1.005394 CACGTGGACGGCCTTTAGT 60.005 57.895 9.82 0.00 44.95 2.24
55 56 0.601841 CACGTGGACGGCCTTTAGTT 60.602 55.000 9.82 0.00 44.95 2.24
56 57 0.320160 ACGTGGACGGCCTTTAGTTC 60.320 55.000 9.82 0.00 44.95 3.01
57 58 1.017701 CGTGGACGGCCTTTAGTTCC 61.018 60.000 9.82 0.00 35.37 3.62
59 60 1.186917 TGGACGGCCTTTAGTTCCGA 61.187 55.000 9.82 0.00 45.53 4.55
60 61 0.177373 GGACGGCCTTTAGTTCCGAT 59.823 55.000 0.00 0.00 45.53 4.18
61 62 1.406477 GGACGGCCTTTAGTTCCGATT 60.406 52.381 0.00 0.00 45.53 3.34
62 63 1.931841 GACGGCCTTTAGTTCCGATTC 59.068 52.381 0.00 0.00 45.53 2.52
63 64 0.928229 CGGCCTTTAGTTCCGATTCG 59.072 55.000 0.00 0.00 45.53 3.34
64 65 1.738030 CGGCCTTTAGTTCCGATTCGT 60.738 52.381 0.00 0.00 45.53 3.85
65 66 1.664151 GGCCTTTAGTTCCGATTCGTG 59.336 52.381 5.20 0.00 0.00 4.35
66 67 2.344025 GCCTTTAGTTCCGATTCGTGT 58.656 47.619 5.20 0.00 0.00 4.49
67 68 3.514645 GCCTTTAGTTCCGATTCGTGTA 58.485 45.455 5.20 0.00 0.00 2.90
68 69 3.928375 GCCTTTAGTTCCGATTCGTGTAA 59.072 43.478 5.20 0.00 0.00 2.41
69 70 4.032558 GCCTTTAGTTCCGATTCGTGTAAG 59.967 45.833 5.20 0.68 0.00 2.34
70 71 5.404946 CCTTTAGTTCCGATTCGTGTAAGA 58.595 41.667 5.20 0.00 0.00 2.10
71 72 5.865552 CCTTTAGTTCCGATTCGTGTAAGAA 59.134 40.000 5.20 0.00 34.31 2.52
72 73 6.183360 CCTTTAGTTCCGATTCGTGTAAGAAC 60.183 42.308 13.72 13.72 35.08 3.01
73 74 3.582780 AGTTCCGATTCGTGTAAGAACC 58.417 45.455 16.37 4.93 35.36 3.62
74 75 2.267188 TCCGATTCGTGTAAGAACCG 57.733 50.000 5.20 0.00 36.92 4.44
76 77 1.274596 CGATTCGTGTAAGAACCGGG 58.725 55.000 6.32 0.00 33.72 5.73
77 78 1.135315 CGATTCGTGTAAGAACCGGGA 60.135 52.381 6.32 0.00 33.72 5.14
78 79 2.265683 GATTCGTGTAAGAACCGGGAC 58.734 52.381 6.32 0.00 32.39 4.46
79 80 1.331214 TTCGTGTAAGAACCGGGACT 58.669 50.000 6.32 0.73 0.00 3.85
80 81 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
81 82 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
82 83 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
83 84 2.989166 CGTGTAAGAACCGGGACTAAAC 59.011 50.000 6.32 7.40 0.00 2.01
84 85 2.989166 GTGTAAGAACCGGGACTAAACG 59.011 50.000 6.32 0.00 0.00 3.60
89 90 2.897972 CCGGGACTAAACGGGAGG 59.102 66.667 0.00 0.00 46.08 4.30
90 91 1.683365 CCGGGACTAAACGGGAGGA 60.683 63.158 0.00 0.00 46.08 3.71
91 92 1.047034 CCGGGACTAAACGGGAGGAT 61.047 60.000 0.00 0.00 46.08 3.24
92 93 0.828677 CGGGACTAAACGGGAGGATT 59.171 55.000 0.00 0.00 0.00 3.01
93 94 1.208776 CGGGACTAAACGGGAGGATTT 59.791 52.381 0.00 0.00 0.00 2.17
94 95 2.431782 CGGGACTAAACGGGAGGATTTA 59.568 50.000 0.00 0.00 0.00 1.40
95 96 3.492137 CGGGACTAAACGGGAGGATTTAG 60.492 52.174 0.00 0.00 41.94 1.85
97 98 4.651045 GGGACTAAACGGGAGGATTTAGTA 59.349 45.833 8.87 0.00 46.59 1.82
98 99 5.129320 GGGACTAAACGGGAGGATTTAGTAA 59.871 44.000 8.87 0.00 46.59 2.24
99 100 6.045318 GGACTAAACGGGAGGATTTAGTAAC 58.955 44.000 8.87 3.45 46.59 2.50
100 101 5.654497 ACTAAACGGGAGGATTTAGTAACG 58.346 41.667 7.44 0.00 45.43 3.18
101 102 4.806640 AAACGGGAGGATTTAGTAACGA 57.193 40.909 0.00 0.00 0.00 3.85
102 103 3.790152 ACGGGAGGATTTAGTAACGAC 57.210 47.619 0.00 0.00 0.00 4.34
103 104 2.428530 ACGGGAGGATTTAGTAACGACC 59.571 50.000 0.00 0.00 0.00 4.79
104 105 2.223900 CGGGAGGATTTAGTAACGACCC 60.224 54.545 0.00 0.00 0.00 4.46
105 106 3.036819 GGGAGGATTTAGTAACGACCCT 58.963 50.000 0.00 0.00 32.93 4.34
106 107 3.453717 GGGAGGATTTAGTAACGACCCTT 59.546 47.826 0.00 0.00 32.93 3.95
107 108 4.080695 GGGAGGATTTAGTAACGACCCTTT 60.081 45.833 0.00 0.00 32.93 3.11
108 109 5.129320 GGGAGGATTTAGTAACGACCCTTTA 59.871 44.000 0.00 0.00 32.93 1.85
109 110 6.279123 GGAGGATTTAGTAACGACCCTTTAG 58.721 44.000 0.00 0.00 0.00 1.85
110 111 6.127225 GGAGGATTTAGTAACGACCCTTTAGT 60.127 42.308 0.00 0.00 0.00 2.24
111 112 6.871844 AGGATTTAGTAACGACCCTTTAGTC 58.128 40.000 0.00 0.00 0.00 2.59
112 113 6.045318 GGATTTAGTAACGACCCTTTAGTCC 58.955 44.000 0.00 0.00 32.91 3.85
113 114 5.405935 TTTAGTAACGACCCTTTAGTCCC 57.594 43.478 0.00 0.00 32.91 4.46
114 115 2.893424 AGTAACGACCCTTTAGTCCCA 58.107 47.619 0.00 0.00 32.91 4.37
115 116 2.830321 AGTAACGACCCTTTAGTCCCAG 59.170 50.000 0.00 0.00 32.91 4.45
116 117 1.725803 AACGACCCTTTAGTCCCAGT 58.274 50.000 0.00 0.00 32.91 4.00
117 118 1.725803 ACGACCCTTTAGTCCCAGTT 58.274 50.000 0.00 0.00 32.91 3.16
118 119 1.622312 ACGACCCTTTAGTCCCAGTTC 59.378 52.381 0.00 0.00 32.91 3.01
119 120 1.900486 CGACCCTTTAGTCCCAGTTCT 59.100 52.381 0.00 0.00 32.91 3.01
120 121 3.094572 CGACCCTTTAGTCCCAGTTCTA 58.905 50.000 0.00 0.00 32.91 2.10
121 122 3.512724 CGACCCTTTAGTCCCAGTTCTAA 59.487 47.826 0.00 0.00 32.91 2.10
122 123 4.020839 CGACCCTTTAGTCCCAGTTCTAAA 60.021 45.833 0.00 0.00 35.65 1.85
123 124 5.511888 CGACCCTTTAGTCCCAGTTCTAAAA 60.512 44.000 0.00 0.00 36.26 1.52
124 125 5.628130 ACCCTTTAGTCCCAGTTCTAAAAC 58.372 41.667 0.00 0.00 36.26 2.43
125 126 5.008331 CCCTTTAGTCCCAGTTCTAAAACC 58.992 45.833 0.00 0.00 36.26 3.27
126 127 4.694037 CCTTTAGTCCCAGTTCTAAAACCG 59.306 45.833 0.00 0.00 36.26 4.44
127 128 2.853235 AGTCCCAGTTCTAAAACCGG 57.147 50.000 0.00 0.00 35.92 5.28
131 132 2.853235 CCAGTTCTAAAACCGGGACT 57.147 50.000 6.32 0.00 35.92 3.85
132 133 3.967332 CCAGTTCTAAAACCGGGACTA 57.033 47.619 6.32 0.00 35.92 2.59
133 134 4.276058 CCAGTTCTAAAACCGGGACTAA 57.724 45.455 6.32 0.00 35.92 2.24
134 135 4.644498 CCAGTTCTAAAACCGGGACTAAA 58.356 43.478 6.32 0.00 35.92 1.85
135 136 4.694037 CCAGTTCTAAAACCGGGACTAAAG 59.306 45.833 6.32 0.00 35.92 1.85
136 137 4.694037 CAGTTCTAAAACCGGGACTAAAGG 59.306 45.833 6.32 0.00 35.92 3.11
137 138 3.339253 TCTAAAACCGGGACTAAAGGC 57.661 47.619 6.32 0.00 0.00 4.35
138 139 2.026915 TCTAAAACCGGGACTAAAGGCC 60.027 50.000 6.32 0.00 0.00 5.19
139 140 0.251474 AAAACCGGGACTAAAGGCCC 60.251 55.000 11.29 11.29 41.11 5.80
140 141 1.138228 AAACCGGGACTAAAGGCCCT 61.138 55.000 18.97 0.00 42.40 5.19
141 142 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
142 143 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
143 144 1.137697 CCGGGACTAAAGGCCCTTAT 58.862 55.000 18.97 0.00 42.40 1.73
144 145 2.332117 CCGGGACTAAAGGCCCTTATA 58.668 52.381 18.97 0.00 42.40 0.98
145 146 2.707257 CCGGGACTAAAGGCCCTTATAA 59.293 50.000 18.97 0.00 42.40 0.98
146 147 3.136992 CCGGGACTAAAGGCCCTTATAAA 59.863 47.826 18.97 0.00 42.40 1.40
147 148 4.132336 CGGGACTAAAGGCCCTTATAAAC 58.868 47.826 18.97 0.00 42.40 2.01
148 149 4.467769 GGGACTAAAGGCCCTTATAAACC 58.532 47.826 14.19 0.00 41.31 3.27
149 150 4.132336 GGACTAAAGGCCCTTATAAACCG 58.868 47.826 0.00 0.00 0.00 4.44
150 151 4.132336 GACTAAAGGCCCTTATAAACCGG 58.868 47.826 0.00 0.00 0.00 5.28
151 152 2.447408 AAAGGCCCTTATAAACCGGG 57.553 50.000 6.32 4.25 41.06 5.73
152 153 1.598869 AAGGCCCTTATAAACCGGGA 58.401 50.000 6.32 0.00 40.55 5.14
153 154 0.841961 AGGCCCTTATAAACCGGGAC 59.158 55.000 6.32 8.92 46.98 4.46
154 155 0.547553 GGCCCTTATAAACCGGGACA 59.452 55.000 6.32 0.00 45.83 4.02
155 156 1.064537 GGCCCTTATAAACCGGGACAA 60.065 52.381 6.32 0.00 45.83 3.18
156 157 2.621147 GGCCCTTATAAACCGGGACAAA 60.621 50.000 6.32 0.00 45.83 2.83
157 158 3.293337 GCCCTTATAAACCGGGACAAAT 58.707 45.455 6.32 0.00 40.55 2.32
158 159 3.067601 GCCCTTATAAACCGGGACAAATG 59.932 47.826 6.32 0.00 40.55 2.32
159 160 3.634910 CCCTTATAAACCGGGACAAATGG 59.365 47.826 6.32 0.00 40.55 3.16
160 161 3.067601 CCTTATAAACCGGGACAAATGGC 59.932 47.826 6.32 0.00 0.00 4.40
161 162 1.480789 ATAAACCGGGACAAATGGCC 58.519 50.000 6.32 0.00 44.61 5.36
171 172 4.188247 GGACAAATGGCCCTTTTTCTAC 57.812 45.455 16.22 1.38 37.19 2.59
172 173 3.832490 GGACAAATGGCCCTTTTTCTACT 59.168 43.478 16.22 0.00 37.19 2.57
173 174 5.014202 GGACAAATGGCCCTTTTTCTACTA 58.986 41.667 16.22 0.00 37.19 1.82
174 175 5.125578 GGACAAATGGCCCTTTTTCTACTAG 59.874 44.000 16.22 1.81 37.19 2.57
181 182 5.123936 GGCCCTTTTTCTACTAGTGTATGG 58.876 45.833 5.39 0.00 0.00 2.74
202 203 5.487433 TGGATTTGAGACTCGCTAATTGAA 58.513 37.500 0.00 0.00 0.00 2.69
207 208 4.486090 TGAGACTCGCTAATTGAAGTGTC 58.514 43.478 0.00 0.00 0.00 3.67
209 210 3.258372 AGACTCGCTAATTGAAGTGTCCA 59.742 43.478 0.00 0.00 0.00 4.02
216 217 3.715628 AATTGAAGTGTCCAGTTGTGC 57.284 42.857 0.00 0.00 0.00 4.57
220 221 1.668751 GAAGTGTCCAGTTGTGCGAAA 59.331 47.619 0.00 0.00 0.00 3.46
237 239 5.629435 GTGCGAAAGAAAATTTAAGGTCTGG 59.371 40.000 0.00 0.00 0.00 3.86
239 241 5.161358 CGAAAGAAAATTTAAGGTCTGGCC 58.839 41.667 0.00 0.00 37.58 5.36
247 249 1.541310 TAAGGTCTGGCCGGTCACTG 61.541 60.000 3.51 0.00 43.70 3.66
250 252 2.203640 TCTGGCCGGTCACTGTCT 60.204 61.111 3.51 0.00 0.00 3.41
256 258 2.573869 CGGTCACTGTCTGCGGAT 59.426 61.111 0.00 0.00 0.00 4.18
272 274 3.472943 GATGCAGCCCGGCTCATCT 62.473 63.158 27.58 11.88 38.67 2.90
273 275 3.769369 ATGCAGCCCGGCTCATCTG 62.769 63.158 9.68 0.00 36.40 2.90
274 276 4.479993 GCAGCCCGGCTCATCTGT 62.480 66.667 9.68 0.00 36.40 3.41
275 277 2.513204 CAGCCCGGCTCATCTGTG 60.513 66.667 9.68 0.00 36.40 3.66
278 280 3.083349 CCCGGCTCATCTGTGGGA 61.083 66.667 0.00 0.00 42.77 4.37
291 293 3.646715 TGGGAGTTCAAGGGCCCG 61.647 66.667 18.44 2.43 43.70 6.13
300 302 2.230130 TCAAGGGCCCGAATTTGATT 57.770 45.000 18.44 0.00 0.00 2.57
303 305 1.485124 AGGGCCCGAATTTGATTTCC 58.515 50.000 18.44 0.00 0.00 3.13
304 306 0.102300 GGGCCCGAATTTGATTTCCG 59.898 55.000 5.69 0.00 0.00 4.30
308 310 1.469079 CCCGAATTTGATTTCCGTGGC 60.469 52.381 0.00 0.00 0.00 5.01
309 311 1.472480 CCGAATTTGATTTCCGTGGCT 59.528 47.619 0.00 0.00 0.00 4.75
310 312 2.680841 CCGAATTTGATTTCCGTGGCTA 59.319 45.455 0.00 0.00 0.00 3.93
349 358 9.740239 GTATTTCGACCATCACAGTTAGTAATA 57.260 33.333 0.00 0.00 0.00 0.98
410 419 7.710475 ACAATTCAAAACAAACTTCAGTATGGG 59.290 33.333 0.00 0.00 36.16 4.00
416 425 9.191995 CAAAACAAACTTCAGTATGGGAAATAC 57.808 33.333 0.00 0.00 36.16 1.89
499 508 9.736023 AAGATTTGTCCGCATATAAGATTTTTC 57.264 29.630 0.00 0.00 0.00 2.29
506 515 8.398665 GTCCGCATATAAGATTTTTCTGAAGTT 58.601 33.333 0.00 0.00 0.00 2.66
708 724 7.939784 AATTCTGTATGGAGTAAAAGGAACC 57.060 36.000 0.00 0.00 0.00 3.62
709 725 5.080969 TCTGTATGGAGTAAAAGGAACCG 57.919 43.478 0.00 0.00 0.00 4.44
710 726 4.081309 TCTGTATGGAGTAAAAGGAACCGG 60.081 45.833 0.00 0.00 0.00 5.28
713 729 0.679002 GGAGTAAAAGGAACCGGGGC 60.679 60.000 6.32 0.00 0.00 5.80
744 4735 2.222819 GCACGAGCTAGTAATGTTGCAC 60.223 50.000 0.00 0.00 37.91 4.57
752 4743 3.848272 AGTAATGTTGCACAAATCCCG 57.152 42.857 0.00 0.00 0.00 5.14
796 4787 4.810191 ACAGACCCTTGTCAGAGAATAC 57.190 45.455 0.00 0.00 44.33 1.89
797 4788 3.193691 ACAGACCCTTGTCAGAGAATACG 59.806 47.826 0.00 0.00 44.33 3.06
852 4843 5.362556 ACACGGACTTTTGAATCAAGATG 57.637 39.130 0.00 0.00 0.00 2.90
887 4878 2.804527 CGGTGGATGTGAGCTATCAATG 59.195 50.000 0.00 0.00 37.14 2.82
888 4879 3.144506 GGTGGATGTGAGCTATCAATGG 58.855 50.000 0.00 0.00 37.14 3.16
895 4886 6.041296 GGATGTGAGCTATCAATGGGAAAAAT 59.959 38.462 0.00 0.00 37.14 1.82
904 4895 3.581770 TCAATGGGAAAAATCATGTGCCA 59.418 39.130 0.00 0.00 37.16 4.92
909 4900 4.081752 TGGGAAAAATCATGTGCCACATAC 60.082 41.667 10.53 0.00 36.53 2.39
910 4901 4.104776 GGAAAAATCATGTGCCACATACG 58.895 43.478 10.53 0.00 36.53 3.06
911 4902 4.142491 GGAAAAATCATGTGCCACATACGA 60.142 41.667 10.53 5.14 36.53 3.43
912 4903 5.450412 GGAAAAATCATGTGCCACATACGAT 60.450 40.000 10.53 7.39 36.53 3.73
913 4904 4.556942 AAATCATGTGCCACATACGATG 57.443 40.909 10.53 0.00 36.53 3.84
914 4905 1.952193 TCATGTGCCACATACGATGG 58.048 50.000 10.53 0.00 36.53 3.51
915 4906 0.946528 CATGTGCCACATACGATGGG 59.053 55.000 10.53 0.00 36.53 4.00
923 4914 3.553828 CACATACGATGGGGTAAAGGT 57.446 47.619 0.00 0.00 33.60 3.50
924 4915 4.675976 CACATACGATGGGGTAAAGGTA 57.324 45.455 0.00 0.00 33.60 3.08
925 4916 4.628074 CACATACGATGGGGTAAAGGTAG 58.372 47.826 0.00 0.00 33.60 3.18
926 4917 4.100498 CACATACGATGGGGTAAAGGTAGT 59.900 45.833 0.00 0.00 33.60 2.73
927 4918 4.718276 ACATACGATGGGGTAAAGGTAGTT 59.282 41.667 0.00 0.00 33.60 2.24
928 4919 3.622166 ACGATGGGGTAAAGGTAGTTG 57.378 47.619 0.00 0.00 0.00 3.16
929 4920 2.285977 CGATGGGGTAAAGGTAGTTGC 58.714 52.381 0.00 0.00 0.00 4.17
930 4921 2.651455 GATGGGGTAAAGGTAGTTGCC 58.349 52.381 0.00 0.00 32.85 4.52
931 4922 1.447099 TGGGGTAAAGGTAGTTGCCA 58.553 50.000 0.00 0.00 35.13 4.92
932 4923 1.997040 TGGGGTAAAGGTAGTTGCCAT 59.003 47.619 0.00 0.00 35.13 4.40
933 4924 2.380590 TGGGGTAAAGGTAGTTGCCATT 59.619 45.455 0.00 0.00 35.13 3.16
934 4925 3.181416 TGGGGTAAAGGTAGTTGCCATTT 60.181 43.478 0.00 0.00 35.13 2.32
935 4926 3.194755 GGGGTAAAGGTAGTTGCCATTTG 59.805 47.826 0.00 0.00 35.13 2.32
936 4927 3.830178 GGGTAAAGGTAGTTGCCATTTGT 59.170 43.478 0.00 0.00 35.13 2.83
937 4928 4.082408 GGGTAAAGGTAGTTGCCATTTGTC 60.082 45.833 0.00 0.00 35.13 3.18
938 4929 4.521256 GGTAAAGGTAGTTGCCATTTGTCA 59.479 41.667 0.00 0.00 33.75 3.58
939 4930 5.010213 GGTAAAGGTAGTTGCCATTTGTCAA 59.990 40.000 0.00 0.00 33.75 3.18
940 4931 4.853924 AAGGTAGTTGCCATTTGTCAAG 57.146 40.909 0.00 0.00 0.00 3.02
941 4932 3.157087 AGGTAGTTGCCATTTGTCAAGG 58.843 45.455 0.00 0.00 0.00 3.61
942 4933 2.231235 GGTAGTTGCCATTTGTCAAGGG 59.769 50.000 1.90 1.90 36.87 3.95
943 4934 2.086610 AGTTGCCATTTGTCAAGGGT 57.913 45.000 7.08 0.00 36.13 4.34
944 4935 1.688197 AGTTGCCATTTGTCAAGGGTG 59.312 47.619 7.08 0.00 36.13 4.61
945 4936 1.412343 GTTGCCATTTGTCAAGGGTGT 59.588 47.619 7.08 0.00 36.13 4.16
946 4937 1.786937 TGCCATTTGTCAAGGGTGTT 58.213 45.000 7.08 0.00 36.13 3.32
947 4938 2.950781 TGCCATTTGTCAAGGGTGTTA 58.049 42.857 7.08 0.00 36.13 2.41
948 4939 3.505386 TGCCATTTGTCAAGGGTGTTAT 58.495 40.909 7.08 0.00 36.13 1.89
949 4940 3.257873 TGCCATTTGTCAAGGGTGTTATG 59.742 43.478 7.08 0.00 36.13 1.90
950 4941 3.848726 CCATTTGTCAAGGGTGTTATGC 58.151 45.455 0.00 0.00 0.00 3.14
951 4942 3.257873 CCATTTGTCAAGGGTGTTATGCA 59.742 43.478 0.00 0.00 0.00 3.96
952 4943 4.262377 CCATTTGTCAAGGGTGTTATGCAA 60.262 41.667 0.00 0.00 0.00 4.08
953 4944 5.295950 CATTTGTCAAGGGTGTTATGCAAA 58.704 37.500 0.00 0.00 0.00 3.68
954 4945 4.582701 TTGTCAAGGGTGTTATGCAAAG 57.417 40.909 0.00 0.00 0.00 2.77
955 4946 3.561143 TGTCAAGGGTGTTATGCAAAGT 58.439 40.909 0.00 0.00 0.00 2.66
956 4947 4.720046 TGTCAAGGGTGTTATGCAAAGTA 58.280 39.130 0.00 0.00 0.00 2.24
957 4948 4.517453 TGTCAAGGGTGTTATGCAAAGTAC 59.483 41.667 0.00 0.00 0.00 2.73
958 4949 4.760204 GTCAAGGGTGTTATGCAAAGTACT 59.240 41.667 0.00 0.00 0.00 2.73
959 4950 5.001232 TCAAGGGTGTTATGCAAAGTACTC 58.999 41.667 0.00 0.00 0.00 2.59
960 4951 3.951663 AGGGTGTTATGCAAAGTACTCC 58.048 45.455 0.00 0.00 0.00 3.85
961 4952 3.014623 GGGTGTTATGCAAAGTACTCCC 58.985 50.000 0.00 12.29 37.21 4.30
962 4953 3.308188 GGGTGTTATGCAAAGTACTCCCT 60.308 47.826 17.01 0.00 39.86 4.20
963 4954 3.939592 GGTGTTATGCAAAGTACTCCCTC 59.060 47.826 0.00 0.00 0.00 4.30
964 4955 3.939592 GTGTTATGCAAAGTACTCCCTCC 59.060 47.826 0.00 0.00 0.00 4.30
965 4956 3.195661 GTTATGCAAAGTACTCCCTCCG 58.804 50.000 0.00 0.00 0.00 4.63
966 4957 1.276622 ATGCAAAGTACTCCCTCCGT 58.723 50.000 0.00 0.00 0.00 4.69
967 4958 1.053424 TGCAAAGTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
968 4959 1.418637 TGCAAAGTACTCCCTCCGTTT 59.581 47.619 0.00 0.00 0.00 3.60
969 4960 2.074576 GCAAAGTACTCCCTCCGTTTC 58.925 52.381 0.00 0.00 0.00 2.78
970 4961 2.549349 GCAAAGTACTCCCTCCGTTTCA 60.549 50.000 0.00 0.00 0.00 2.69
971 4962 3.735591 CAAAGTACTCCCTCCGTTTCAA 58.264 45.455 0.00 0.00 0.00 2.69
972 4963 4.131596 CAAAGTACTCCCTCCGTTTCAAA 58.868 43.478 0.00 0.00 0.00 2.69
973 4964 4.426736 AAGTACTCCCTCCGTTTCAAAA 57.573 40.909 0.00 0.00 0.00 2.44
974 4965 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
975 4966 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
976 4967 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
977 4968 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
978 4969 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
979 4970 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
980 4971 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
981 4972 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
982 4973 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
983 4974 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
984 4975 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
985 4976 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
986 4977 7.066284 CCTCCGTTTCAAAATAGATGACTCAAT 59.934 37.037 0.00 0.00 0.00 2.57
987 4978 9.098355 CTCCGTTTCAAAATAGATGACTCAATA 57.902 33.333 0.00 0.00 0.00 1.90
988 4979 9.613428 TCCGTTTCAAAATAGATGACTCAATAT 57.387 29.630 0.00 0.00 0.00 1.28
1014 5005 0.898320 AACACATGGACTCTCCCTCG 59.102 55.000 0.00 0.00 35.03 4.63
1019 5010 2.364448 GGACTCTCCCTCGCCCTT 60.364 66.667 0.00 0.00 0.00 3.95
1020 5011 1.990614 GGACTCTCCCTCGCCCTTT 60.991 63.158 0.00 0.00 0.00 3.11
1024 5015 1.965754 CTCTCCCTCGCCCTTTCCTG 61.966 65.000 0.00 0.00 0.00 3.86
1029 5020 1.376037 CTCGCCCTTTCCTGGACAC 60.376 63.158 0.00 0.00 0.00 3.67
1179 5170 4.271816 CGCTCCGAGATCCACCGG 62.272 72.222 0.00 0.00 46.57 5.28
1317 5314 3.967335 CGTCGAGATCCCGCCTCC 61.967 72.222 0.00 0.00 0.00 4.30
1438 5435 1.737735 CATGTCGCTCGGTTCTGCA 60.738 57.895 0.00 0.00 0.00 4.41
1479 5476 2.975799 GGTTCGCCGCCTCACAAA 60.976 61.111 0.00 0.00 0.00 2.83
1486 5483 2.357517 CGCCTCACAAACGGCTCT 60.358 61.111 0.00 0.00 44.11 4.09
1511 5508 3.787001 CTCCCCCGGGTCTTCTGC 61.787 72.222 21.85 0.00 36.47 4.26
1532 5529 2.537560 CGAGCATTGCCGGACCATC 61.538 63.158 5.05 0.00 0.00 3.51
1645 5643 3.866582 GGCATCGTCCTCCCCCTG 61.867 72.222 0.00 0.00 0.00 4.45
1646 5644 3.866582 GCATCGTCCTCCCCCTGG 61.867 72.222 0.00 0.00 0.00 4.45
1647 5645 2.365635 CATCGTCCTCCCCCTGGT 60.366 66.667 0.00 0.00 0.00 4.00
1648 5646 1.075525 CATCGTCCTCCCCCTGGTA 60.076 63.158 0.00 0.00 0.00 3.25
1689 5689 3.474570 AGCTGCCTCCCGATGTCC 61.475 66.667 0.00 0.00 0.00 4.02
1700 5700 2.919043 GATGTCCGGCCATCCCTT 59.081 61.111 14.63 0.00 36.12 3.95
1703 5703 4.191015 GTCCGGCCATCCCTTCCC 62.191 72.222 2.24 0.00 0.00 3.97
1754 5754 0.039764 TGGAGTGAGGAGATGACGGT 59.960 55.000 0.00 0.00 0.00 4.83
1797 5797 3.760035 CTCGTGGCTACCGTGGCT 61.760 66.667 6.84 0.00 0.00 4.75
1805 5805 3.545124 CTACCGTGGCTGGCAACCA 62.545 63.158 5.29 5.29 33.84 3.67
1809 5809 2.601367 GTGGCTGGCAACCATGGT 60.601 61.111 13.00 13.00 39.95 3.55
1817 5817 1.259840 GGCAACCATGGTGGCATCTT 61.260 55.000 38.81 11.85 46.37 2.40
1861 5861 1.071542 TCATGGAGCGTTTCAACCTCA 59.928 47.619 0.00 0.00 31.80 3.86
1867 5867 0.517316 GCGTTTCAACCTCAATCGCT 59.483 50.000 0.00 0.00 38.40 4.93
1892 5892 4.988598 CTCCGTGCACCGCCACTT 62.989 66.667 12.15 0.00 33.60 3.16
1893 5893 4.980805 TCCGTGCACCGCCACTTC 62.981 66.667 12.15 0.00 33.60 3.01
1899 5899 4.096003 CACCGCCACTTCCCCGAT 62.096 66.667 0.00 0.00 0.00 4.18
1905 5905 0.322546 GCCACTTCCCCGATGACTTT 60.323 55.000 0.00 0.00 0.00 2.66
1926 5926 1.153289 CATCTGCTTCCGGACCAGG 60.153 63.158 23.90 10.73 0.00 4.45
1929 5929 3.003173 TGCTTCCGGACCAGGGAG 61.003 66.667 1.83 0.00 39.97 4.30
1932 5932 2.284405 TTCCGGACCAGGGAGGAC 60.284 66.667 1.83 0.00 41.22 3.85
1936 5936 2.606826 GGACCAGGGAGGACCGTT 60.607 66.667 0.00 0.00 46.96 4.44
1970 5970 4.392166 TAGCCTCCACGCCCCTCA 62.392 66.667 0.00 0.00 0.00 3.86
1977 5977 4.760047 CACGCCCCTCACTTCCGG 62.760 72.222 0.00 0.00 0.00 5.14
2034 6034 2.251642 GCCGGTGACTGCTCGTTTT 61.252 57.895 1.90 0.00 37.61 2.43
2035 6035 1.782028 GCCGGTGACTGCTCGTTTTT 61.782 55.000 1.90 0.00 37.61 1.94
2046 6046 1.044725 CTCGTTTTTGTGTGCGCATC 58.955 50.000 15.91 11.19 0.00 3.91
2048 6048 1.044725 CGTTTTTGTGTGCGCATCTC 58.955 50.000 15.91 9.15 0.00 2.75
2054 6054 1.450134 GTGTGCGCATCTCCATCCA 60.450 57.895 15.91 0.00 0.00 3.41
2063 6063 0.765903 ATCTCCATCCACGGCATCCT 60.766 55.000 0.00 0.00 0.00 3.24
2085 6085 1.751927 CCATGCCTGGTCTTGCTCC 60.752 63.158 0.00 0.00 37.79 4.70
2124 6124 0.460987 CACCCTTCTGCCTCATCGAC 60.461 60.000 0.00 0.00 0.00 4.20
2125 6125 0.904865 ACCCTTCTGCCTCATCGACA 60.905 55.000 0.00 0.00 0.00 4.35
2178 6178 0.871722 TGTCGGAATTTCGGCTGTTG 59.128 50.000 12.76 0.00 35.57 3.33
2187 6187 3.365265 CGGCTGTTGGCTTGGACC 61.365 66.667 0.00 0.00 41.46 4.46
2206 6206 1.304134 GCCAACCCCGACTGGATTT 60.304 57.895 0.00 0.00 37.49 2.17
2211 6211 3.564027 CCCGACTGGATTTCGCGC 61.564 66.667 0.00 0.00 37.49 6.86
2218 6218 1.746727 CTGGATTTCGCGCTCGTCTG 61.747 60.000 5.56 0.00 36.96 3.51
2232 6232 1.881903 CGTCTGAGCTCCTCTTGCCA 61.882 60.000 12.15 0.00 0.00 4.92
2234 6234 0.543883 TCTGAGCTCCTCTTGCCAGT 60.544 55.000 12.15 0.00 33.57 4.00
2236 6236 1.123861 TGAGCTCCTCTTGCCAGTGT 61.124 55.000 12.15 0.00 0.00 3.55
2250 6250 2.824041 GTGTGCGGCGGGATTGAT 60.824 61.111 9.78 0.00 0.00 2.57
2253 6253 1.893808 GTGCGGCGGGATTGATCAT 60.894 57.895 9.78 0.00 0.00 2.45
2254 6254 1.597854 TGCGGCGGGATTGATCATC 60.598 57.895 9.78 0.00 0.00 2.92
2255 6255 1.597854 GCGGCGGGATTGATCATCA 60.598 57.895 9.78 0.00 32.79 3.07
2256 6256 1.845809 GCGGCGGGATTGATCATCAC 61.846 60.000 9.78 0.00 32.79 3.06
2332 6332 2.113433 ATCCACGTCGAGGAGACCG 61.113 63.158 16.59 0.05 46.92 4.79
2347 6347 2.545106 GAGACCGAGGACTATCGTCTTC 59.455 54.545 0.00 0.00 41.41 2.87
2348 6348 1.603326 GACCGAGGACTATCGTCTTCC 59.397 57.143 4.23 0.00 41.70 3.46
2358 6358 2.756283 CGTCTTCCGAGCCCTCCT 60.756 66.667 0.00 0.00 39.56 3.69
2391 6391 2.592308 GGCCTGGGTGATCCTGAC 59.408 66.667 0.00 0.00 36.68 3.51
2399 6399 3.083349 TGATCCTGACGCCCCTGG 61.083 66.667 0.00 0.00 0.00 4.45
2501 6502 1.991230 CCCATCCCGTTCTGGTTCT 59.009 57.895 0.00 0.00 35.15 3.01
2512 6513 1.672356 CTGGTTCTTCTGGTGGCCG 60.672 63.158 0.00 0.00 0.00 6.13
2540 6541 1.528292 GCCGATAGTCGCTCCCTCAT 61.528 60.000 0.00 0.00 38.82 2.90
2541 6542 1.822506 CCGATAGTCGCTCCCTCATA 58.177 55.000 0.00 0.00 38.82 2.15
2543 6544 1.131504 CGATAGTCGCTCCCTCATAGC 59.868 57.143 0.00 0.00 36.60 2.97
2549 6550 2.502492 GCTCCCTCATAGCGGCTGA 61.502 63.158 13.86 1.87 0.00 4.26
2555 6556 1.680522 CTCATAGCGGCTGACAGGGT 61.681 60.000 13.86 0.00 0.00 4.34
2632 6633 7.461182 TCAACCCAAATTTATTGATTCGACT 57.539 32.000 7.33 0.00 0.00 4.18
2633 6634 7.891561 TCAACCCAAATTTATTGATTCGACTT 58.108 30.769 7.33 0.00 0.00 3.01
2915 6918 8.478066 TGCGATTCCTCATGTAATAGCTATAAT 58.522 33.333 6.68 0.00 35.52 1.28
3103 7106 0.472471 AGAGAACCGGACCAAAGCAA 59.528 50.000 9.46 0.00 0.00 3.91
3131 7134 7.624549 ACACATAGTGAATACATGAACTCCTT 58.375 34.615 0.00 0.00 36.96 3.36
3168 7171 8.523658 CATCACTGAGAAGTATCCCGATTATTA 58.476 37.037 0.00 0.00 0.00 0.98
3356 7359 8.878211 ACATCAATCTCAGAACATAGTGGATAT 58.122 33.333 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.399075 CACCTTTAGTCCCGGTTGGT 59.601 55.000 0.00 0.00 34.77 3.67
1 2 0.322187 CCACCTTTAGTCCCGGTTGG 60.322 60.000 0.00 0.00 0.00 3.77
2 3 0.688487 TCCACCTTTAGTCCCGGTTG 59.312 55.000 0.00 0.00 0.00 3.77
3 4 0.981943 CTCCACCTTTAGTCCCGGTT 59.018 55.000 0.00 0.00 0.00 4.44
4 5 1.551019 GCTCCACCTTTAGTCCCGGT 61.551 60.000 0.00 0.00 0.00 5.28
5 6 1.221021 GCTCCACCTTTAGTCCCGG 59.779 63.158 0.00 0.00 0.00 5.73
6 7 0.175989 GAGCTCCACCTTTAGTCCCG 59.824 60.000 0.87 0.00 0.00 5.14
7 8 0.542333 GGAGCTCCACCTTTAGTCCC 59.458 60.000 28.43 0.00 35.64 4.46
8 9 1.208293 CTGGAGCTCCACCTTTAGTCC 59.792 57.143 32.00 1.86 42.01 3.85
9 10 1.406205 GCTGGAGCTCCACCTTTAGTC 60.406 57.143 32.00 12.61 42.01 2.59
10 11 0.615850 GCTGGAGCTCCACCTTTAGT 59.384 55.000 32.00 0.00 42.01 2.24
11 12 0.615331 TGCTGGAGCTCCACCTTTAG 59.385 55.000 32.00 20.99 42.01 1.85
12 13 0.615331 CTGCTGGAGCTCCACCTTTA 59.385 55.000 32.00 14.24 42.01 1.85
13 14 1.377994 CTGCTGGAGCTCCACCTTT 59.622 57.895 32.00 0.00 42.01 3.11
14 15 3.076092 CTGCTGGAGCTCCACCTT 58.924 61.111 32.00 0.00 42.01 3.50
15 16 3.715097 GCTGCTGGAGCTCCACCT 61.715 66.667 32.00 0.00 45.21 4.00
35 36 1.740296 CTAAAGGCCGTCCACGTGG 60.740 63.158 29.26 29.26 37.74 4.94
36 37 0.601841 AACTAAAGGCCGTCCACGTG 60.602 55.000 9.08 9.08 37.74 4.49
37 38 0.320160 GAACTAAAGGCCGTCCACGT 60.320 55.000 0.00 0.00 37.74 4.49
38 39 1.017701 GGAACTAAAGGCCGTCCACG 61.018 60.000 0.00 0.00 39.44 4.94
39 40 1.017701 CGGAACTAAAGGCCGTCCAC 61.018 60.000 0.00 0.00 40.17 4.02
40 41 1.186917 TCGGAACTAAAGGCCGTCCA 61.187 55.000 0.00 0.00 45.02 4.02
41 42 0.177373 ATCGGAACTAAAGGCCGTCC 59.823 55.000 0.00 0.00 45.02 4.79
42 43 1.931841 GAATCGGAACTAAAGGCCGTC 59.068 52.381 0.00 2.49 45.02 4.79
43 44 1.738030 CGAATCGGAACTAAAGGCCGT 60.738 52.381 0.00 0.00 45.02 5.68
44 45 0.928229 CGAATCGGAACTAAAGGCCG 59.072 55.000 0.00 0.00 46.08 6.13
45 46 1.664151 CACGAATCGGAACTAAAGGCC 59.336 52.381 7.80 0.00 0.00 5.19
46 47 2.344025 ACACGAATCGGAACTAAAGGC 58.656 47.619 7.80 0.00 0.00 4.35
47 48 5.404946 TCTTACACGAATCGGAACTAAAGG 58.595 41.667 7.80 0.00 0.00 3.11
48 49 6.183360 GGTTCTTACACGAATCGGAACTAAAG 60.183 42.308 16.70 8.20 35.07 1.85
49 50 5.634859 GGTTCTTACACGAATCGGAACTAAA 59.365 40.000 16.70 0.32 35.07 1.85
50 51 5.163513 GGTTCTTACACGAATCGGAACTAA 58.836 41.667 16.70 3.67 35.07 2.24
51 52 4.672542 CGGTTCTTACACGAATCGGAACTA 60.673 45.833 16.70 0.00 42.24 2.24
52 53 3.582780 GGTTCTTACACGAATCGGAACT 58.417 45.455 16.70 0.00 35.07 3.01
53 54 2.343544 CGGTTCTTACACGAATCGGAAC 59.656 50.000 7.80 10.04 42.24 3.62
54 55 2.598589 CGGTTCTTACACGAATCGGAA 58.401 47.619 7.80 0.00 42.24 4.30
55 56 2.267188 CGGTTCTTACACGAATCGGA 57.733 50.000 7.80 0.00 42.24 4.55
57 58 1.135315 TCCCGGTTCTTACACGAATCG 60.135 52.381 0.00 0.00 44.73 3.34
58 59 2.094338 AGTCCCGGTTCTTACACGAATC 60.094 50.000 0.00 0.00 0.00 2.52
59 60 1.897802 AGTCCCGGTTCTTACACGAAT 59.102 47.619 0.00 0.00 0.00 3.34
60 61 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
61 62 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
62 63 2.989166 GTTTAGTCCCGGTTCTTACACG 59.011 50.000 0.00 0.00 0.00 4.49
63 64 2.989166 CGTTTAGTCCCGGTTCTTACAC 59.011 50.000 0.00 0.00 0.00 2.90
64 65 2.029110 CCGTTTAGTCCCGGTTCTTACA 60.029 50.000 0.00 0.00 39.38 2.41
65 66 2.610433 CCGTTTAGTCCCGGTTCTTAC 58.390 52.381 0.00 0.13 39.38 2.34
66 67 1.550072 CCCGTTTAGTCCCGGTTCTTA 59.450 52.381 0.00 0.00 42.67 2.10
67 68 0.322648 CCCGTTTAGTCCCGGTTCTT 59.677 55.000 0.00 0.00 42.67 2.52
68 69 0.542702 TCCCGTTTAGTCCCGGTTCT 60.543 55.000 0.00 0.15 42.67 3.01
69 70 0.108472 CTCCCGTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 42.67 3.62
70 71 1.547472 CCTCCCGTTTAGTCCCGGTT 61.547 60.000 0.00 0.00 42.67 4.44
71 72 1.986210 CCTCCCGTTTAGTCCCGGT 60.986 63.158 0.00 0.00 42.67 5.28
72 73 1.047034 ATCCTCCCGTTTAGTCCCGG 61.047 60.000 0.00 0.00 43.82 5.73
73 74 0.828677 AATCCTCCCGTTTAGTCCCG 59.171 55.000 0.00 0.00 0.00 5.14
74 75 3.453717 ACTAAATCCTCCCGTTTAGTCCC 59.546 47.826 5.05 0.00 43.83 4.46
75 76 4.750021 ACTAAATCCTCCCGTTTAGTCC 57.250 45.455 5.05 0.00 43.83 3.85
76 77 5.745769 CGTTACTAAATCCTCCCGTTTAGTC 59.254 44.000 12.25 1.85 43.83 2.59
77 78 5.418840 TCGTTACTAAATCCTCCCGTTTAGT 59.581 40.000 13.14 13.14 46.86 2.24
78 79 5.745769 GTCGTTACTAAATCCTCCCGTTTAG 59.254 44.000 0.00 0.00 41.44 1.85
79 80 5.394115 GGTCGTTACTAAATCCTCCCGTTTA 60.394 44.000 0.00 0.00 0.00 2.01
80 81 4.498241 GTCGTTACTAAATCCTCCCGTTT 58.502 43.478 0.00 0.00 0.00 3.60
81 82 3.118992 GGTCGTTACTAAATCCTCCCGTT 60.119 47.826 0.00 0.00 0.00 4.44
82 83 2.428530 GGTCGTTACTAAATCCTCCCGT 59.571 50.000 0.00 0.00 0.00 5.28
83 84 2.223900 GGGTCGTTACTAAATCCTCCCG 60.224 54.545 0.00 0.00 0.00 5.14
84 85 3.036819 AGGGTCGTTACTAAATCCTCCC 58.963 50.000 0.00 0.00 0.00 4.30
85 86 4.750021 AAGGGTCGTTACTAAATCCTCC 57.250 45.455 0.00 0.00 0.00 4.30
86 87 6.871844 ACTAAAGGGTCGTTACTAAATCCTC 58.128 40.000 0.00 0.00 0.00 3.71
87 88 6.127225 GGACTAAAGGGTCGTTACTAAATCCT 60.127 42.308 0.00 0.00 37.12 3.24
88 89 6.045318 GGACTAAAGGGTCGTTACTAAATCC 58.955 44.000 0.00 0.00 37.12 3.01
89 90 6.045318 GGGACTAAAGGGTCGTTACTAAATC 58.955 44.000 0.00 0.00 37.12 2.17
90 91 5.484998 TGGGACTAAAGGGTCGTTACTAAAT 59.515 40.000 0.00 0.00 37.12 1.40
91 92 4.837860 TGGGACTAAAGGGTCGTTACTAAA 59.162 41.667 0.00 0.00 37.12 1.85
92 93 4.415596 TGGGACTAAAGGGTCGTTACTAA 58.584 43.478 0.00 0.00 37.12 2.24
93 94 4.019174 CTGGGACTAAAGGGTCGTTACTA 58.981 47.826 0.00 0.00 37.12 1.82
94 95 2.830321 CTGGGACTAAAGGGTCGTTACT 59.170 50.000 0.00 0.00 37.12 2.24
95 96 2.564504 ACTGGGACTAAAGGGTCGTTAC 59.435 50.000 0.00 0.00 37.12 2.50
96 97 2.893424 ACTGGGACTAAAGGGTCGTTA 58.107 47.619 0.00 0.00 37.12 3.18
97 98 1.725803 ACTGGGACTAAAGGGTCGTT 58.274 50.000 0.00 0.00 37.12 3.85
98 99 1.622312 GAACTGGGACTAAAGGGTCGT 59.378 52.381 0.00 0.00 37.12 4.34
99 100 1.900486 AGAACTGGGACTAAAGGGTCG 59.100 52.381 0.00 0.00 37.12 4.79
100 101 5.494390 TTTAGAACTGGGACTAAAGGGTC 57.506 43.478 0.00 0.00 34.87 4.46
101 102 5.457197 GGTTTTAGAACTGGGACTAAAGGGT 60.457 44.000 0.00 0.00 38.95 4.34
102 103 5.008331 GGTTTTAGAACTGGGACTAAAGGG 58.992 45.833 0.00 0.00 38.95 3.95
103 104 4.694037 CGGTTTTAGAACTGGGACTAAAGG 59.306 45.833 0.00 0.00 38.95 3.11
104 105 5.857822 CGGTTTTAGAACTGGGACTAAAG 57.142 43.478 0.00 0.00 38.95 1.85
113 114 4.694037 CCTTTAGTCCCGGTTTTAGAACTG 59.306 45.833 0.00 0.00 41.01 3.16
114 115 4.805272 GCCTTTAGTCCCGGTTTTAGAACT 60.805 45.833 0.00 0.00 36.03 3.01
115 116 3.438087 GCCTTTAGTCCCGGTTTTAGAAC 59.562 47.826 0.00 0.00 34.96 3.01
116 117 3.559811 GGCCTTTAGTCCCGGTTTTAGAA 60.560 47.826 0.00 0.00 0.00 2.10
117 118 2.026915 GGCCTTTAGTCCCGGTTTTAGA 60.027 50.000 0.00 0.00 0.00 2.10
118 119 2.362736 GGCCTTTAGTCCCGGTTTTAG 58.637 52.381 0.00 0.00 0.00 1.85
119 120 1.004628 GGGCCTTTAGTCCCGGTTTTA 59.995 52.381 0.84 0.00 32.00 1.52
120 121 0.251474 GGGCCTTTAGTCCCGGTTTT 60.251 55.000 0.84 0.00 32.00 2.43
121 122 1.381463 GGGCCTTTAGTCCCGGTTT 59.619 57.895 0.84 0.00 32.00 3.27
122 123 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
126 127 4.467769 GGTTTATAAGGGCCTTTAGTCCC 58.532 47.826 26.29 15.26 42.94 4.46
127 128 4.132336 CGGTTTATAAGGGCCTTTAGTCC 58.868 47.826 26.29 18.13 0.00 3.85
128 129 4.132336 CCGGTTTATAAGGGCCTTTAGTC 58.868 47.826 26.29 11.28 0.00 2.59
129 130 3.117776 CCCGGTTTATAAGGGCCTTTAGT 60.118 47.826 26.29 13.44 38.51 2.24
130 131 3.136992 TCCCGGTTTATAAGGGCCTTTAG 59.863 47.826 26.29 8.03 44.70 1.85
131 132 3.117926 GTCCCGGTTTATAAGGGCCTTTA 60.118 47.826 26.29 10.10 44.70 1.85
132 133 1.924552 TCCCGGTTTATAAGGGCCTTT 59.075 47.619 26.29 14.49 44.70 3.11
133 134 1.213678 GTCCCGGTTTATAAGGGCCTT 59.786 52.381 24.44 24.44 44.70 4.35
134 135 0.841961 GTCCCGGTTTATAAGGGCCT 59.158 55.000 0.00 0.00 44.70 5.19
135 136 0.547553 TGTCCCGGTTTATAAGGGCC 59.452 55.000 0.00 0.00 44.70 5.80
136 137 2.423446 TTGTCCCGGTTTATAAGGGC 57.577 50.000 0.00 0.00 44.70 5.19
137 138 3.634910 CCATTTGTCCCGGTTTATAAGGG 59.365 47.826 0.00 2.44 46.40 3.95
138 139 3.067601 GCCATTTGTCCCGGTTTATAAGG 59.932 47.826 0.00 0.00 0.00 2.69
139 140 3.067601 GGCCATTTGTCCCGGTTTATAAG 59.932 47.826 0.00 0.00 0.00 1.73
140 141 3.025262 GGCCATTTGTCCCGGTTTATAA 58.975 45.455 0.00 0.00 0.00 0.98
141 142 2.657143 GGCCATTTGTCCCGGTTTATA 58.343 47.619 0.00 0.00 0.00 0.98
142 143 1.480789 GGCCATTTGTCCCGGTTTAT 58.519 50.000 0.00 0.00 0.00 1.40
143 144 0.612453 GGGCCATTTGTCCCGGTTTA 60.612 55.000 4.39 0.00 32.00 2.01
144 145 1.911269 GGGCCATTTGTCCCGGTTT 60.911 57.895 4.39 0.00 32.00 3.27
145 146 2.283604 GGGCCATTTGTCCCGGTT 60.284 61.111 4.39 0.00 32.00 4.44
149 150 1.977854 AGAAAAAGGGCCATTTGTCCC 59.022 47.619 25.73 11.52 42.94 4.46
150 151 3.832490 AGTAGAAAAAGGGCCATTTGTCC 59.168 43.478 25.73 13.84 28.13 4.02
151 152 5.710567 ACTAGTAGAAAAAGGGCCATTTGTC 59.289 40.000 22.82 22.82 0.00 3.18
152 153 5.476945 CACTAGTAGAAAAAGGGCCATTTGT 59.523 40.000 17.44 11.46 0.00 2.83
153 154 5.476945 ACACTAGTAGAAAAAGGGCCATTTG 59.523 40.000 17.44 3.54 0.00 2.32
154 155 5.641155 ACACTAGTAGAAAAAGGGCCATTT 58.359 37.500 10.16 10.16 0.00 2.32
155 156 5.256806 ACACTAGTAGAAAAAGGGCCATT 57.743 39.130 6.18 0.00 0.00 3.16
156 157 4.929146 ACACTAGTAGAAAAAGGGCCAT 57.071 40.909 6.18 0.00 0.00 4.40
157 158 5.338871 CCATACACTAGTAGAAAAAGGGCCA 60.339 44.000 6.18 0.00 32.86 5.36
158 159 5.104652 TCCATACACTAGTAGAAAAAGGGCC 60.105 44.000 3.59 0.00 32.86 5.80
159 160 5.985911 TCCATACACTAGTAGAAAAAGGGC 58.014 41.667 3.59 0.00 32.86 5.19
160 161 8.893727 CAAATCCATACACTAGTAGAAAAAGGG 58.106 37.037 3.59 0.00 32.86 3.95
161 162 9.667107 TCAAATCCATACACTAGTAGAAAAAGG 57.333 33.333 3.59 0.65 32.86 3.11
164 165 9.871238 GTCTCAAATCCATACACTAGTAGAAAA 57.129 33.333 3.59 0.00 32.86 2.29
165 166 9.256228 AGTCTCAAATCCATACACTAGTAGAAA 57.744 33.333 3.59 0.00 32.86 2.52
166 167 8.824756 AGTCTCAAATCCATACACTAGTAGAA 57.175 34.615 3.59 0.00 32.86 2.10
167 168 7.226918 CGAGTCTCAAATCCATACACTAGTAGA 59.773 40.741 3.59 0.00 32.86 2.59
168 169 7.356540 CGAGTCTCAAATCCATACACTAGTAG 58.643 42.308 0.00 0.00 32.86 2.57
169 170 6.238676 GCGAGTCTCAAATCCATACACTAGTA 60.239 42.308 0.00 0.00 34.10 1.82
170 171 5.450688 GCGAGTCTCAAATCCATACACTAGT 60.451 44.000 0.00 0.00 0.00 2.57
171 172 4.979197 GCGAGTCTCAAATCCATACACTAG 59.021 45.833 0.00 0.00 0.00 2.57
172 173 4.645136 AGCGAGTCTCAAATCCATACACTA 59.355 41.667 0.00 0.00 0.00 2.74
173 174 3.449018 AGCGAGTCTCAAATCCATACACT 59.551 43.478 0.00 0.00 0.00 3.55
174 175 3.786635 AGCGAGTCTCAAATCCATACAC 58.213 45.455 0.00 0.00 0.00 2.90
181 182 6.091441 ACACTTCAATTAGCGAGTCTCAAATC 59.909 38.462 0.00 0.00 0.00 2.17
189 190 3.006967 ACTGGACACTTCAATTAGCGAGT 59.993 43.478 0.00 0.00 0.00 4.18
202 203 1.134521 TCTTTCGCACAACTGGACACT 60.135 47.619 0.00 0.00 0.00 3.55
207 208 6.074356 CCTTAAATTTTCTTTCGCACAACTGG 60.074 38.462 0.00 0.00 0.00 4.00
209 210 6.569780 ACCTTAAATTTTCTTTCGCACAACT 58.430 32.000 0.00 0.00 0.00 3.16
216 217 5.161358 GGCCAGACCTTAAATTTTCTTTCG 58.839 41.667 0.00 0.00 34.51 3.46
220 221 3.089284 CCGGCCAGACCTTAAATTTTCT 58.911 45.455 2.24 0.00 35.61 2.52
239 241 1.807165 CATCCGCAGACAGTGACCG 60.807 63.158 0.00 0.00 0.00 4.79
256 258 4.478371 CAGATGAGCCGGGCTGCA 62.478 66.667 29.31 22.89 39.88 4.41
259 261 3.790437 CCACAGATGAGCCGGGCT 61.790 66.667 24.13 24.13 43.88 5.19
260 262 4.864334 CCCACAGATGAGCCGGGC 62.864 72.222 12.11 12.11 0.00 6.13
261 263 3.083349 TCCCACAGATGAGCCGGG 61.083 66.667 2.18 0.00 38.34 5.73
262 264 1.903877 AACTCCCACAGATGAGCCGG 61.904 60.000 0.00 0.00 31.65 6.13
264 266 0.615331 TGAACTCCCACAGATGAGCC 59.385 55.000 0.00 0.00 31.65 4.70
267 269 1.630369 CCCTTGAACTCCCACAGATGA 59.370 52.381 0.00 0.00 0.00 2.92
272 274 2.840753 GGGCCCTTGAACTCCCACA 61.841 63.158 17.04 0.00 38.62 4.17
273 275 2.035783 GGGCCCTTGAACTCCCAC 59.964 66.667 17.04 0.00 38.62 4.61
274 276 3.646715 CGGGCCCTTGAACTCCCA 61.647 66.667 22.43 0.00 38.68 4.37
275 277 2.211468 ATTCGGGCCCTTGAACTCCC 62.211 60.000 22.43 0.00 35.42 4.30
278 280 1.203001 TCAAATTCGGGCCCTTGAACT 60.203 47.619 22.43 3.49 0.00 3.01
291 293 6.861065 TCTATAGCCACGGAAATCAAATTC 57.139 37.500 0.00 0.00 0.00 2.17
408 417 8.262933 ACTGGTATGTTTGTAGTAGTATTTCCC 58.737 37.037 0.00 0.00 0.00 3.97
461 470 5.808540 GCGGACAAATCTTGTATGTGTACTA 59.191 40.000 0.00 0.00 45.52 1.82
477 486 8.275015 TCAGAAAAATCTTATATGCGGACAAA 57.725 30.769 0.00 0.00 0.00 2.83
684 700 6.598064 CGGTTCCTTTTACTCCATACAGAATT 59.402 38.462 0.00 0.00 0.00 2.17
685 701 6.113411 CGGTTCCTTTTACTCCATACAGAAT 58.887 40.000 0.00 0.00 0.00 2.40
688 704 4.189231 CCGGTTCCTTTTACTCCATACAG 58.811 47.826 0.00 0.00 0.00 2.74
690 706 3.538591 CCCGGTTCCTTTTACTCCATAC 58.461 50.000 0.00 0.00 0.00 2.39
740 4731 2.264005 AGTTGTACGGGATTTGTGCA 57.736 45.000 0.00 0.00 0.00 4.57
769 4760 4.079970 CTCTGACAAGGGTCTGTAGTACA 58.920 47.826 2.36 2.36 44.61 2.90
812 4803 3.179048 GTGTTCCACAACTTCAAAGTGC 58.821 45.455 0.00 0.00 39.66 4.40
835 4826 6.076981 ACACACCATCTTGATTCAAAAGTC 57.923 37.500 0.01 0.00 0.00 3.01
887 4878 3.615224 ATGTGGCACATGATTTTTCCC 57.385 42.857 30.96 0.00 44.52 3.97
888 4879 4.104776 CGTATGTGGCACATGATTTTTCC 58.895 43.478 36.61 15.83 44.52 3.13
895 4886 1.474855 CCCATCGTATGTGGCACATGA 60.475 52.381 36.61 27.62 44.52 3.07
904 4895 4.292643 ACTACCTTTACCCCATCGTATGT 58.707 43.478 0.00 0.00 0.00 2.29
909 4900 2.285977 GCAACTACCTTTACCCCATCG 58.714 52.381 0.00 0.00 0.00 3.84
910 4901 2.025699 TGGCAACTACCTTTACCCCATC 60.026 50.000 0.00 0.00 37.61 3.51
911 4902 1.997040 TGGCAACTACCTTTACCCCAT 59.003 47.619 0.00 0.00 37.61 4.00
912 4903 1.447099 TGGCAACTACCTTTACCCCA 58.553 50.000 0.00 0.00 37.61 4.96
913 4904 2.820728 ATGGCAACTACCTTTACCCC 57.179 50.000 0.00 0.00 37.61 4.95
914 4905 3.830178 ACAAATGGCAACTACCTTTACCC 59.170 43.478 0.00 0.00 37.61 3.69
915 4906 4.521256 TGACAAATGGCAACTACCTTTACC 59.479 41.667 0.00 0.00 37.61 2.85
916 4907 5.699097 TGACAAATGGCAACTACCTTTAC 57.301 39.130 0.00 0.00 37.61 2.01
917 4908 5.242838 CCTTGACAAATGGCAACTACCTTTA 59.757 40.000 0.00 0.00 38.31 1.85
918 4909 4.039124 CCTTGACAAATGGCAACTACCTTT 59.961 41.667 0.00 0.00 38.31 3.11
919 4910 3.573967 CCTTGACAAATGGCAACTACCTT 59.426 43.478 0.00 0.00 38.31 3.50
920 4911 3.157087 CCTTGACAAATGGCAACTACCT 58.843 45.455 0.00 0.00 38.31 3.08
921 4912 2.231235 CCCTTGACAAATGGCAACTACC 59.769 50.000 0.00 0.00 38.31 3.18
922 4913 2.890945 ACCCTTGACAAATGGCAACTAC 59.109 45.455 0.00 0.00 38.31 2.73
923 4914 2.890311 CACCCTTGACAAATGGCAACTA 59.110 45.455 0.00 0.00 38.31 2.24
924 4915 1.688197 CACCCTTGACAAATGGCAACT 59.312 47.619 0.00 0.00 38.31 3.16
925 4916 1.412343 ACACCCTTGACAAATGGCAAC 59.588 47.619 0.00 0.00 38.31 4.17
926 4917 1.786937 ACACCCTTGACAAATGGCAA 58.213 45.000 1.10 1.10 41.52 4.52
927 4918 1.786937 AACACCCTTGACAAATGGCA 58.213 45.000 0.00 0.00 0.00 4.92
928 4919 3.848726 CATAACACCCTTGACAAATGGC 58.151 45.455 3.82 0.00 0.00 4.40
929 4920 3.257873 TGCATAACACCCTTGACAAATGG 59.742 43.478 2.58 2.58 0.00 3.16
930 4921 4.517952 TGCATAACACCCTTGACAAATG 57.482 40.909 0.00 0.00 0.00 2.32
931 4922 5.070313 ACTTTGCATAACACCCTTGACAAAT 59.930 36.000 0.00 0.00 0.00 2.32
932 4923 4.404073 ACTTTGCATAACACCCTTGACAAA 59.596 37.500 0.00 0.00 0.00 2.83
933 4924 3.957497 ACTTTGCATAACACCCTTGACAA 59.043 39.130 0.00 0.00 0.00 3.18
934 4925 3.561143 ACTTTGCATAACACCCTTGACA 58.439 40.909 0.00 0.00 0.00 3.58
935 4926 4.760204 AGTACTTTGCATAACACCCTTGAC 59.240 41.667 0.00 0.00 0.00 3.18
936 4927 4.980573 AGTACTTTGCATAACACCCTTGA 58.019 39.130 0.00 0.00 0.00 3.02
937 4928 4.156008 GGAGTACTTTGCATAACACCCTTG 59.844 45.833 0.00 0.00 0.00 3.61
938 4929 4.332828 GGAGTACTTTGCATAACACCCTT 58.667 43.478 0.00 0.00 0.00 3.95
939 4930 3.308188 GGGAGTACTTTGCATAACACCCT 60.308 47.826 13.08 0.00 39.04 4.34
940 4931 3.014623 GGGAGTACTTTGCATAACACCC 58.985 50.000 0.00 7.60 35.93 4.61
941 4932 3.939592 GAGGGAGTACTTTGCATAACACC 59.060 47.826 0.00 0.00 0.00 4.16
942 4933 3.939592 GGAGGGAGTACTTTGCATAACAC 59.060 47.826 0.00 0.00 0.00 3.32
943 4934 3.369052 CGGAGGGAGTACTTTGCATAACA 60.369 47.826 0.00 0.00 0.00 2.41
944 4935 3.195661 CGGAGGGAGTACTTTGCATAAC 58.804 50.000 0.00 0.00 0.00 1.89
945 4936 2.835764 ACGGAGGGAGTACTTTGCATAA 59.164 45.455 0.00 0.00 0.00 1.90
946 4937 2.463752 ACGGAGGGAGTACTTTGCATA 58.536 47.619 0.00 0.00 0.00 3.14
947 4938 1.276622 ACGGAGGGAGTACTTTGCAT 58.723 50.000 0.00 0.00 0.00 3.96
948 4939 1.053424 AACGGAGGGAGTACTTTGCA 58.947 50.000 0.00 0.00 0.00 4.08
949 4940 2.074576 GAAACGGAGGGAGTACTTTGC 58.925 52.381 0.00 0.00 0.00 3.68
950 4941 3.396260 TGAAACGGAGGGAGTACTTTG 57.604 47.619 0.00 0.00 0.00 2.77
951 4942 4.426736 TTTGAAACGGAGGGAGTACTTT 57.573 40.909 0.00 0.00 0.00 2.66
952 4943 4.426736 TTTTGAAACGGAGGGAGTACTT 57.573 40.909 0.00 0.00 0.00 2.24
953 4944 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
954 4945 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
955 4946 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
956 4947 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
957 4948 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
958 4949 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
959 4950 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
960 4951 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
961 4952 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
962 4953 7.921786 ATTGAGTCATCTATTTTGAAACGGA 57.078 32.000 0.00 0.00 0.00 4.69
984 4975 9.950496 GGAGAGTCCATGTGTTGATAATATATT 57.050 33.333 2.97 2.97 36.28 1.28
985 4976 8.543774 GGGAGAGTCCATGTGTTGATAATATAT 58.456 37.037 0.00 0.00 38.64 0.86
986 4977 7.734865 AGGGAGAGTCCATGTGTTGATAATATA 59.265 37.037 0.00 0.00 38.64 0.86
987 4978 6.560304 AGGGAGAGTCCATGTGTTGATAATAT 59.440 38.462 0.00 0.00 38.64 1.28
988 4979 5.905331 AGGGAGAGTCCATGTGTTGATAATA 59.095 40.000 0.00 0.00 38.64 0.98
989 4980 4.723789 AGGGAGAGTCCATGTGTTGATAAT 59.276 41.667 0.00 0.00 38.64 1.28
990 4981 4.104086 AGGGAGAGTCCATGTGTTGATAA 58.896 43.478 0.00 0.00 38.64 1.75
991 4982 3.706594 GAGGGAGAGTCCATGTGTTGATA 59.293 47.826 0.00 0.00 38.64 2.15
992 4983 2.503356 GAGGGAGAGTCCATGTGTTGAT 59.497 50.000 0.00 0.00 38.64 2.57
993 4984 1.902508 GAGGGAGAGTCCATGTGTTGA 59.097 52.381 0.00 0.00 38.64 3.18
994 4985 1.404717 CGAGGGAGAGTCCATGTGTTG 60.405 57.143 0.00 0.00 38.64 3.33
995 4986 0.898320 CGAGGGAGAGTCCATGTGTT 59.102 55.000 0.00 0.00 38.64 3.32
996 4987 1.608717 GCGAGGGAGAGTCCATGTGT 61.609 60.000 0.00 0.00 38.64 3.72
997 4988 1.142748 GCGAGGGAGAGTCCATGTG 59.857 63.158 0.00 0.00 38.64 3.21
998 4989 2.060980 GGCGAGGGAGAGTCCATGT 61.061 63.158 0.00 0.00 38.64 3.21
1004 4995 1.990614 GGAAAGGGCGAGGGAGAGT 60.991 63.158 0.00 0.00 0.00 3.24
1014 5005 2.359975 CCGTGTCCAGGAAAGGGC 60.360 66.667 5.35 0.00 0.00 5.19
1126 5117 4.148825 CGGAGGGGAAGGCGACAG 62.149 72.222 0.00 0.00 0.00 3.51
1150 5141 4.451150 GGAGCGTGGATGCGGACA 62.451 66.667 0.00 0.00 40.67 4.02
1155 5146 1.663074 GATCTCGGAGCGTGGATGC 60.663 63.158 0.00 0.00 0.00 3.91
1157 5148 1.455773 TGGATCTCGGAGCGTGGAT 60.456 57.895 0.00 0.00 0.00 3.41
1168 5159 1.258676 GGAGATACCCGGTGGATCTC 58.741 60.000 25.75 25.75 40.68 2.75
1190 5181 1.152567 AGATCCAGAGGCTCCTCCG 60.153 63.158 11.71 2.29 43.70 4.63
1299 5296 3.967335 GAGGCGGGATCTCGACGG 61.967 72.222 21.68 0.00 44.03 4.79
1301 5298 3.607661 GGGAGGCGGGATCTCGAC 61.608 72.222 21.68 18.38 38.69 4.20
1344 5341 3.347590 TCGGGGGAGGAGCTGAGA 61.348 66.667 0.00 0.00 0.00 3.27
1410 5407 0.882042 GAGCGACATGGCCATAGTGG 60.882 60.000 20.30 19.45 41.55 4.00
1515 5512 2.537560 CGATGGTCCGGCAATGCTC 61.538 63.158 4.82 0.00 0.00 4.26
1567 5564 2.336809 CGAGGTCATAGGCGAGGC 59.663 66.667 0.00 0.00 0.00 4.70
1587 5584 4.459089 GTGGGCAGAGAGGCGGAC 62.459 72.222 0.00 0.00 45.36 4.79
1628 5626 3.866582 CAGGGGGAGGACGATGCC 61.867 72.222 0.00 0.00 0.00 4.40
1631 5629 1.233369 CTACCAGGGGGAGGACGAT 59.767 63.158 0.00 0.00 38.05 3.73
1660 5659 4.783621 GCAGCTGCCATGGACGGA 62.784 66.667 28.76 0.00 34.31 4.69
1672 5671 3.474570 GGACATCGGGAGGCAGCT 61.475 66.667 0.00 0.00 0.00 4.24
1710 5710 1.944676 GTAACAGATCTCCGCCGCG 60.945 63.158 5.59 5.59 0.00 6.46
1716 5716 2.043227 CAGGGGAGGTAACAGATCTCC 58.957 57.143 0.00 0.00 44.64 3.71
1718 5718 1.651770 TCCAGGGGAGGTAACAGATCT 59.348 52.381 0.00 0.00 41.41 2.75
1797 5797 1.983481 GATGCCACCATGGTTGCCA 60.983 57.895 31.83 21.94 40.46 4.92
1805 5805 1.679944 CCTCAACGAAGATGCCACCAT 60.680 52.381 0.00 0.00 0.00 3.55
1809 5809 0.250234 CCTCCTCAACGAAGATGCCA 59.750 55.000 0.00 0.00 0.00 4.92
1899 5899 2.354103 CCGGAAGCAGATGAGAAAGTCA 60.354 50.000 0.00 0.00 40.38 3.41
1905 5905 0.614697 TGGTCCGGAAGCAGATGAGA 60.615 55.000 5.23 0.00 0.00 3.27
1912 5912 3.003173 CTCCCTGGTCCGGAAGCA 61.003 66.667 5.23 5.61 0.00 3.91
1953 5953 4.392166 TGAGGGGCGTGGAGGCTA 62.392 66.667 0.00 0.00 45.89 3.93
1970 5970 0.250597 GGTAAACACCAGCCGGAAGT 60.251 55.000 5.05 0.00 35.59 3.01
1977 5977 1.304134 CCAGGGGGTAAACACCAGC 60.304 63.158 3.35 0.00 42.67 4.85
2025 6025 1.585002 GCGCACACAAAAACGAGCA 60.585 52.632 0.30 0.00 0.00 4.26
2034 6034 1.026182 GGATGGAGATGCGCACACAA 61.026 55.000 14.90 0.06 0.00 3.33
2035 6035 1.450134 GGATGGAGATGCGCACACA 60.450 57.895 14.90 10.17 0.00 3.72
2046 6046 1.070445 GAGGATGCCGTGGATGGAG 59.930 63.158 0.00 0.00 0.00 3.86
2048 6048 2.280389 CGAGGATGCCGTGGATGG 60.280 66.667 0.00 0.00 0.00 3.51
2054 6054 2.501128 CATGGTCGAGGATGCCGT 59.499 61.111 0.00 0.00 0.00 5.68
2085 6085 2.588877 AGGATGAATTCGGCGGCG 60.589 61.111 27.15 27.15 0.00 6.46
2098 6098 0.548682 AGGCAGAAGGGTGTGAGGAT 60.549 55.000 0.00 0.00 0.00 3.24
2125 6125 0.886490 CTTGTCTCAAGCGCCAGGTT 60.886 55.000 2.29 0.00 38.84 3.50
2135 6135 2.347490 GGCCGGAGCTTGTCTCAA 59.653 61.111 5.05 0.00 43.70 3.02
2187 6187 3.622060 AATCCAGTCGGGGTTGGCG 62.622 63.158 0.00 0.00 39.05 5.69
2201 6201 1.475441 CTCAGACGAGCGCGAAATCC 61.475 60.000 19.05 0.00 41.64 3.01
2202 6202 1.913685 CTCAGACGAGCGCGAAATC 59.086 57.895 19.05 3.50 41.64 2.17
2211 6211 0.179140 GCAAGAGGAGCTCAGACGAG 60.179 60.000 17.19 1.49 42.66 4.18
2218 6218 0.673022 CACACTGGCAAGAGGAGCTC 60.673 60.000 4.71 4.71 0.00 4.09
2232 6232 3.329542 ATCAATCCCGCCGCACACT 62.330 57.895 0.00 0.00 0.00 3.55
2234 6234 2.513666 GATCAATCCCGCCGCACA 60.514 61.111 0.00 0.00 0.00 4.57
2236 6236 1.597854 GATGATCAATCCCGCCGCA 60.598 57.895 0.00 0.00 0.00 5.69
2242 6242 0.249868 TCGGCGTGATGATCAATCCC 60.250 55.000 6.85 0.00 34.00 3.85
2287 6287 2.496817 GAAGCGGATGAGCGACCT 59.503 61.111 0.00 0.00 43.00 3.85
2375 6375 2.187946 CGTCAGGATCACCCAGGC 59.812 66.667 0.00 0.00 37.41 4.85
2376 6376 2.187946 GCGTCAGGATCACCCAGG 59.812 66.667 0.00 0.00 37.41 4.45
2382 6382 3.083349 CCAGGGGCGTCAGGATCA 61.083 66.667 0.00 0.00 0.00 2.92
2451 6451 2.045536 GCTCAACAGGCAGAGGGG 60.046 66.667 0.00 0.00 32.54 4.79
2455 6455 3.240134 GACCGGCTCAACAGGCAGA 62.240 63.158 0.00 0.00 45.86 4.26
2456 6456 2.743928 GACCGGCTCAACAGGCAG 60.744 66.667 0.00 0.00 45.86 4.85
2457 6457 4.680237 CGACCGGCTCAACAGGCA 62.680 66.667 0.00 0.00 45.86 4.75
2487 6488 0.685097 CCAGAAGAACCAGAACGGGA 59.315 55.000 0.00 0.00 40.22 5.14
2490 6491 1.512926 CCACCAGAAGAACCAGAACG 58.487 55.000 0.00 0.00 0.00 3.95
2495 6496 2.429930 CGGCCACCAGAAGAACCA 59.570 61.111 2.24 0.00 0.00 3.67
2501 6502 1.827399 GAGAACTCCGGCCACCAGAA 61.827 60.000 2.24 0.00 0.00 3.02
2512 6513 0.041135 CGACTATCGGCGAGAACTCC 60.041 60.000 17.22 1.31 36.00 3.85
2540 6541 0.464036 CAATACCCTGTCAGCCGCTA 59.536 55.000 0.00 0.00 0.00 4.26
2541 6542 1.221840 CAATACCCTGTCAGCCGCT 59.778 57.895 0.00 0.00 0.00 5.52
2543 6544 3.131396 GTTATCAATACCCTGTCAGCCG 58.869 50.000 0.00 0.00 0.00 5.52
2555 6556 7.083628 TCCCCTATACTTGTGGGTTATCAATA 58.916 38.462 0.00 0.00 39.31 1.90
2632 6633 8.285891 TCAAGAATATTATTTGGCTCCCCTTAA 58.714 33.333 10.59 0.00 0.00 1.85
2633 6634 7.821566 TCAAGAATATTATTTGGCTCCCCTTA 58.178 34.615 10.59 0.00 0.00 2.69
2915 6918 5.363005 GGAGCTAGTTCTTTGTCACCCTATA 59.637 44.000 6.54 0.00 0.00 1.31
2927 6930 6.888632 ACATTGATGAATTGGAGCTAGTTCTT 59.111 34.615 6.54 0.00 0.00 2.52
3103 7106 9.547753 GGAGTTCATGTATTCACTATGTGTTAT 57.452 33.333 0.00 0.00 34.79 1.89
3131 7134 5.475909 ACTTCTCAGTGATGACCGTAGTTTA 59.524 40.000 0.00 0.00 0.00 2.01
3168 7171 1.189524 TCCGACAACCCCGAAGTGAT 61.190 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.