Multiple sequence alignment - TraesCS3B01G422500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G422500 chr3B 100.000 3878 0 0 1 3878 659541774 659545651 0.000000e+00 7162.0
1 TraesCS3B01G422500 chr3B 93.709 302 15 2 3177 3478 810789703 810789406 2.130000e-122 449.0
2 TraesCS3B01G422500 chr3B 93.160 307 18 1 3178 3484 606376353 606376050 7.640000e-122 448.0
3 TraesCS3B01G422500 chr3B 93.355 301 17 1 3178 3478 766049402 766049699 3.560000e-120 442.0
4 TraesCS3B01G422500 chr3B 91.277 321 24 2 3178 3498 623667583 623667267 5.950000e-118 435.0
5 TraesCS3B01G422500 chr3D 93.966 2287 101 20 890 3157 498860490 498862758 0.000000e+00 3424.0
6 TraesCS3B01G422500 chr3D 84.667 300 18 8 3581 3861 498863201 498863491 1.370000e-69 274.0
7 TraesCS3B01G422500 chr3D 94.444 54 3 0 3517 3570 498863001 498863054 2.480000e-12 84.2
8 TraesCS3B01G422500 chr3A 94.749 2133 93 9 891 3015 638926510 638928631 0.000000e+00 3301.0
9 TraesCS3B01G422500 chr2D 92.662 913 30 10 6 889 25862634 25861730 0.000000e+00 1280.0
10 TraesCS3B01G422500 chr2D 85.914 930 71 25 1 889 128362430 128363340 0.000000e+00 937.0
11 TraesCS3B01G422500 chr2D 91.946 149 12 0 6 154 25867334 25867186 3.930000e-50 209.0
12 TraesCS3B01G422500 chr2D 91.597 119 10 0 771 889 25862575 25862693 8.620000e-37 165.0
13 TraesCS3B01G422500 chr5D 92.366 917 33 10 3 890 491681022 491681930 0.000000e+00 1271.0
14 TraesCS3B01G422500 chr5D 84.731 930 82 26 1 889 502538427 502539337 0.000000e+00 876.0
15 TraesCS3B01G422500 chr6D 92.114 913 35 10 6 889 43452753 43451849 0.000000e+00 1253.0
16 TraesCS3B01G422500 chr6D 91.656 815 31 10 104 889 436779589 436778783 0.000000e+00 1094.0
17 TraesCS3B01G422500 chr6D 89.600 125 13 0 765 889 43452688 43452812 4.010000e-35 159.0
18 TraesCS3B01G422500 chr1D 91.566 913 39 11 6 889 416364124 416363221 0.000000e+00 1225.0
19 TraesCS3B01G422500 chr1D 92.437 119 9 0 771 889 416364065 416364183 1.850000e-38 171.0
20 TraesCS3B01G422500 chr7B 82.277 931 80 31 1 889 730115613 730116500 0.000000e+00 726.0
21 TraesCS3B01G422500 chr4A 93.485 307 17 1 3178 3484 166997092 166997395 1.640000e-123 453.0
22 TraesCS3B01G422500 chr4A 93.709 302 16 1 3178 3479 703764726 703765024 2.130000e-122 449.0
23 TraesCS3B01G422500 chr2B 92.357 314 20 2 3178 3491 26065678 26065987 9.890000e-121 444.0
24 TraesCS3B01G422500 chr1B 92.357 314 21 1 3178 3491 588322415 588322725 9.890000e-121 444.0
25 TraesCS3B01G422500 chr5A 92.834 307 19 1 3178 3484 683947276 683946973 3.560000e-120 442.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G422500 chr3B 659541774 659545651 3877 False 7162.000000 7162 100.000000 1 3878 1 chr3B.!!$F1 3877
1 TraesCS3B01G422500 chr3D 498860490 498863491 3001 False 1260.733333 3424 91.025667 890 3861 3 chr3D.!!$F1 2971
2 TraesCS3B01G422500 chr3A 638926510 638928631 2121 False 3301.000000 3301 94.749000 891 3015 1 chr3A.!!$F1 2124
3 TraesCS3B01G422500 chr2D 25861730 25862634 904 True 1280.000000 1280 92.662000 6 889 1 chr2D.!!$R1 883
4 TraesCS3B01G422500 chr2D 128362430 128363340 910 False 937.000000 937 85.914000 1 889 1 chr2D.!!$F2 888
5 TraesCS3B01G422500 chr5D 491681022 491681930 908 False 1271.000000 1271 92.366000 3 890 1 chr5D.!!$F1 887
6 TraesCS3B01G422500 chr5D 502538427 502539337 910 False 876.000000 876 84.731000 1 889 1 chr5D.!!$F2 888
7 TraesCS3B01G422500 chr6D 43451849 43452753 904 True 1253.000000 1253 92.114000 6 889 1 chr6D.!!$R1 883
8 TraesCS3B01G422500 chr6D 436778783 436779589 806 True 1094.000000 1094 91.656000 104 889 1 chr6D.!!$R2 785
9 TraesCS3B01G422500 chr1D 416363221 416364124 903 True 1225.000000 1225 91.566000 6 889 1 chr1D.!!$R1 883
10 TraesCS3B01G422500 chr7B 730115613 730116500 887 False 726.000000 726 82.277000 1 889 1 chr7B.!!$F1 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 321 0.462759 GGCCATGGCAGTCTGTACTC 60.463 60.0 36.56 12.63 44.11 2.59 F
1563 1630 0.249073 CCGTCTATGTCGAGCAAGGG 60.249 60.0 0.00 0.00 0.00 3.95 F
2556 2623 0.381089 CGAAGATAGAGCCGACCGTT 59.619 55.0 0.00 0.00 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2261 0.459489 ATCTTCTCGAGCAGCCTCAC 59.541 55.0 7.81 0.00 38.00 3.51 R
2816 2883 0.032017 AGGCCGAAGACCCAGAGTAT 60.032 55.0 0.00 0.00 0.00 2.12 R
3371 3438 0.034477 ATTTCAGGATTTCCGGCGGT 60.034 50.0 27.32 6.51 42.08 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.304381 GCCATGTGTCCATGTGGGT 60.304 57.895 0.00 0.00 45.83 4.51
169 183 0.616395 TGCCAATCGAGGACTACCCA 60.616 55.000 0.00 0.00 37.41 4.51
172 186 2.039418 CCAATCGAGGACTACCCATGA 58.961 52.381 0.00 0.00 37.41 3.07
247 283 7.593273 GTCTAAATGATCTCTATCACAACGAGG 59.407 40.741 0.00 0.00 44.79 4.63
284 320 1.604378 GGCCATGGCAGTCTGTACT 59.396 57.895 36.56 0.00 44.11 2.73
285 321 0.462759 GGCCATGGCAGTCTGTACTC 60.463 60.000 36.56 12.63 44.11 2.59
286 322 0.539051 GCCATGGCAGTCTGTACTCT 59.461 55.000 32.08 0.00 41.49 3.24
287 323 1.741732 GCCATGGCAGTCTGTACTCTG 60.742 57.143 32.08 1.95 41.49 3.35
288 324 1.552337 CCATGGCAGTCTGTACTCTGT 59.448 52.381 0.00 0.00 31.97 3.41
289 325 2.760650 CCATGGCAGTCTGTACTCTGTA 59.239 50.000 0.00 5.58 31.97 2.74
290 326 3.429547 CCATGGCAGTCTGTACTCTGTAC 60.430 52.174 0.00 1.33 31.97 2.90
440 491 1.927174 GATCGTTGACGGAGGATGTTG 59.073 52.381 3.48 0.00 40.29 3.33
699 750 2.343758 GAGACAGAACGCCCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
723 774 3.089784 CGGGCCGACGAATCAAAG 58.910 61.111 24.41 0.00 35.47 2.77
838 889 3.088532 GGGACACATGGCACTCATTTAA 58.911 45.455 0.00 0.00 32.92 1.52
850 901 1.410153 CTCATTTAATGGCCCTGCACC 59.590 52.381 0.00 0.00 0.00 5.01
1053 1105 4.400251 CACCTCCCCTCTCCCCGT 62.400 72.222 0.00 0.00 0.00 5.28
1076 1128 4.652131 ACGAAACCCCGCATGCCA 62.652 61.111 13.15 0.00 0.00 4.92
1092 1144 2.270205 CAGCGCACCTCCCTGAAT 59.730 61.111 11.47 0.00 0.00 2.57
1099 1151 1.127343 CACCTCCCTGAATCTCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
1100 1152 0.397816 ACCTCCCTGAATCTCCTCCG 60.398 60.000 0.00 0.00 0.00 4.63
1102 1154 1.490574 CTCCCTGAATCTCCTCCGTT 58.509 55.000 0.00 0.00 0.00 4.44
1103 1155 1.410882 CTCCCTGAATCTCCTCCGTTC 59.589 57.143 0.00 0.00 0.00 3.95
1162 1214 4.680237 CCAAGTCCGCAGCCGTCA 62.680 66.667 0.00 0.00 0.00 4.35
1461 1528 1.597461 GGTGAAGAACTCCGGGGAG 59.403 63.158 9.33 13.14 46.91 4.30
1473 1540 2.064581 CGGGGAGTTCGGGAGGATT 61.065 63.158 0.00 0.00 0.00 3.01
1536 1603 4.821805 CCAAACATAGTGACCTTCAACACT 59.178 41.667 0.00 0.00 46.81 3.55
1563 1630 0.249073 CCGTCTATGTCGAGCAAGGG 60.249 60.000 0.00 0.00 0.00 3.95
1570 1637 0.537188 TGTCGAGCAAGGGAAGATCC 59.463 55.000 0.00 0.00 35.23 3.36
1720 1787 0.827368 GCTCAGGGAGAGGTACAAGG 59.173 60.000 0.00 0.00 44.86 3.61
1822 1889 4.794439 CGATGCGGCGGTCACTCA 62.794 66.667 9.78 0.00 0.00 3.41
1825 1892 3.939837 ATGCGGCGGTCACTCACAG 62.940 63.158 9.78 0.00 0.00 3.66
1869 1936 1.945819 GCATTGAAGGTCCTTCTCGCA 60.946 52.381 28.02 9.59 40.73 5.10
1944 2011 2.933287 TGCACGGGGGAGGAACAT 60.933 61.111 0.00 0.00 0.00 2.71
1974 2041 1.561643 CCAAGGAGCTGTACCAGAGA 58.438 55.000 0.00 0.00 32.44 3.10
2025 2092 0.670162 GCTTGTCAGTGTGCAACCAT 59.330 50.000 0.00 0.00 34.36 3.55
2100 2167 1.204113 AGGACCTGCTGGAGAAAGGG 61.204 60.000 17.64 0.00 35.24 3.95
2154 2221 1.274167 AGGTCGCATTTCAACGTCCTA 59.726 47.619 0.00 0.00 44.16 2.94
2194 2261 2.124403 GCATCTGGAGGTGGGCTG 60.124 66.667 0.00 0.00 0.00 4.85
2226 2293 1.140652 GAGAAGATGCAGGAGAAGGGG 59.859 57.143 0.00 0.00 0.00 4.79
2315 2382 0.861837 GCTGTGGACACGTTCAAGAG 59.138 55.000 0.00 0.00 0.00 2.85
2325 2392 5.000012 ACACGTTCAAGAGGATGATAGAC 58.000 43.478 0.00 0.00 0.00 2.59
2340 2407 3.961414 GACCGGGGGCTGAAACCA 61.961 66.667 6.32 0.00 0.00 3.67
2391 2458 2.498726 CTCGAGAAGGGCAGGCTC 59.501 66.667 6.58 0.00 0.00 4.70
2493 2560 2.043980 CATTTACGCCGGCAAGGGT 61.044 57.895 28.98 18.57 41.48 4.34
2530 2597 1.796796 GCAGTTCTTCGGGACATGC 59.203 57.895 0.00 0.00 0.00 4.06
2556 2623 0.381089 CGAAGATAGAGCCGACCGTT 59.619 55.000 0.00 0.00 0.00 4.44
2640 2707 2.094894 CAGGATGAAGATGCACAACGTC 59.905 50.000 0.00 0.00 39.69 4.34
2649 2716 3.470567 CACAACGTCGAGCCGAGC 61.471 66.667 0.00 0.00 36.23 5.03
2691 2758 0.884704 TCGAAGCCCTTGTGCAAGAC 60.885 55.000 12.99 5.39 40.79 3.01
2816 2883 4.564782 ATGGCTCTCTTGTTGATCTCAA 57.435 40.909 0.00 0.00 0.00 3.02
2838 2905 1.217183 ACTCTGGGTCTTCGGCCTATA 59.783 52.381 0.00 0.00 0.00 1.31
2889 2956 8.134905 ACGACGAGTTTTAAATAACTTCTTGT 57.865 30.769 0.00 0.00 38.43 3.16
2906 2973 6.039382 ACTTCTTGTTGTTGAGGGTGTTAATC 59.961 38.462 0.00 0.00 0.00 1.75
3001 3068 5.104259 AGAAGAACATATCACTTGACCCC 57.896 43.478 0.00 0.00 0.00 4.95
3082 3149 2.301583 TGCTCTGCATACACCACAAGTA 59.698 45.455 0.00 0.00 31.71 2.24
3083 3150 2.932614 GCTCTGCATACACCACAAGTAG 59.067 50.000 0.00 0.00 0.00 2.57
3102 3169 0.784778 GTGCGTACTGTCTGCAAGTC 59.215 55.000 8.23 0.00 40.83 3.01
3135 3202 2.421529 GGCCACGGGATACAAGAAGATT 60.422 50.000 0.00 0.00 39.74 2.40
3150 3217 3.503748 AGAAGATTTTCTGGAAAGCGTGG 59.496 43.478 0.00 0.00 42.04 4.94
3152 3219 0.603065 ATTTTCTGGAAAGCGTGGGC 59.397 50.000 0.00 0.00 40.37 5.36
3153 3220 0.753479 TTTTCTGGAAAGCGTGGGCA 60.753 50.000 0.00 0.00 43.41 5.36
3154 3221 1.452145 TTTCTGGAAAGCGTGGGCAC 61.452 55.000 0.00 0.00 43.41 5.01
3176 3243 4.362476 GCACCGGGGCAAGCAAAG 62.362 66.667 27.59 0.00 0.00 2.77
3177 3244 2.912025 CACCGGGGCAAGCAAAGT 60.912 61.111 6.32 0.00 0.00 2.66
3178 3245 2.123468 ACCGGGGCAAGCAAAGTT 60.123 55.556 6.32 0.00 0.00 2.66
3179 3246 1.760480 ACCGGGGCAAGCAAAGTTT 60.760 52.632 6.32 0.00 0.00 2.66
3180 3247 1.334384 ACCGGGGCAAGCAAAGTTTT 61.334 50.000 6.32 0.00 0.00 2.43
3181 3248 0.179059 CCGGGGCAAGCAAAGTTTTT 60.179 50.000 0.00 0.00 0.00 1.94
3202 3269 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
3203 3270 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
3204 3271 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
3205 3272 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
3206 3273 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
3207 3274 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
3208 3275 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
3209 3276 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
3210 3277 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
3211 3278 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
3212 3279 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
3213 3280 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
3214 3281 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
3215 3282 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
3216 3283 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
3217 3284 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
3218 3285 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
3222 3289 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
3223 3290 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
3224 3291 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
3225 3292 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
3226 3293 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
3227 3294 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
3228 3295 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
3229 3296 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
3230 3297 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
3231 3298 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3232 3299 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3233 3300 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3234 3301 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
3235 3302 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
3236 3303 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
3237 3304 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
3238 3305 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
3239 3306 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
3240 3307 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
3241 3308 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
3242 3309 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
3243 3310 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
3244 3311 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
3245 3312 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
3246 3313 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
3247 3314 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
3248 3315 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
3249 3316 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
3250 3317 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
3251 3318 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
3252 3319 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
3253 3320 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
3254 3321 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
3255 3322 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
3256 3323 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
3259 3326 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
3260 3327 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
3261 3328 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
3262 3329 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
3263 3330 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
3264 3331 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
3265 3332 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
3266 3333 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
3267 3334 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
3268 3335 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
3269 3336 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
3270 3337 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
3271 3338 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
3272 3339 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
3273 3340 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
3274 3341 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
3275 3342 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
3276 3343 1.133009 CCTACCCCTATGAGCACCTCT 60.133 57.143 0.00 0.00 0.00 3.69
3277 3344 1.967066 CTACCCCTATGAGCACCTCTG 59.033 57.143 0.00 0.00 0.00 3.35
3278 3345 0.339859 ACCCCTATGAGCACCTCTGA 59.660 55.000 0.00 0.00 0.00 3.27
3279 3346 1.047002 CCCCTATGAGCACCTCTGAG 58.953 60.000 0.00 0.00 0.00 3.35
3280 3347 1.412217 CCCCTATGAGCACCTCTGAGA 60.412 57.143 6.17 0.00 0.00 3.27
3281 3348 2.392662 CCCTATGAGCACCTCTGAGAA 58.607 52.381 6.17 0.00 0.00 2.87
3282 3349 2.768527 CCCTATGAGCACCTCTGAGAAA 59.231 50.000 6.17 0.00 0.00 2.52
3283 3350 3.431486 CCCTATGAGCACCTCTGAGAAAC 60.431 52.174 6.17 0.00 0.00 2.78
3284 3351 3.450457 CCTATGAGCACCTCTGAGAAACT 59.550 47.826 6.17 0.00 0.00 2.66
3285 3352 2.827800 TGAGCACCTCTGAGAAACTG 57.172 50.000 6.17 0.00 0.00 3.16
3286 3353 2.319844 TGAGCACCTCTGAGAAACTGA 58.680 47.619 6.17 0.00 0.00 3.41
3287 3354 2.298446 TGAGCACCTCTGAGAAACTGAG 59.702 50.000 6.17 0.00 41.94 3.35
3288 3355 1.001860 AGCACCTCTGAGAAACTGAGC 59.998 52.381 6.17 0.00 41.28 4.26
3289 3356 1.943507 GCACCTCTGAGAAACTGAGCC 60.944 57.143 6.17 0.00 41.28 4.70
3290 3357 0.605589 ACCTCTGAGAAACTGAGCCG 59.394 55.000 6.17 0.00 41.28 5.52
3291 3358 0.108424 CCTCTGAGAAACTGAGCCGG 60.108 60.000 6.17 0.00 41.28 6.13
3292 3359 0.739112 CTCTGAGAAACTGAGCCGGC 60.739 60.000 21.89 21.89 37.65 6.13
3293 3360 1.004560 CTGAGAAACTGAGCCGGCA 60.005 57.895 31.54 7.98 0.00 5.69
3294 3361 0.392193 CTGAGAAACTGAGCCGGCAT 60.392 55.000 31.54 14.28 0.00 4.40
3295 3362 0.901827 TGAGAAACTGAGCCGGCATA 59.098 50.000 31.54 16.21 0.00 3.14
3296 3363 1.486310 TGAGAAACTGAGCCGGCATAT 59.514 47.619 31.54 8.11 0.00 1.78
3297 3364 2.139118 GAGAAACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
3298 3365 1.486310 AGAAACTGAGCCGGCATATCA 59.514 47.619 31.54 22.44 0.00 2.15
3299 3366 2.105477 AGAAACTGAGCCGGCATATCAT 59.895 45.455 31.54 10.64 0.00 2.45
3300 3367 2.175878 AACTGAGCCGGCATATCATC 57.824 50.000 31.54 16.99 0.00 2.92
3301 3368 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
3302 3369 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3303 3370 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
3304 3371 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
3305 3372 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
3306 3373 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
3307 3374 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
3308 3375 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
3309 3376 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
3310 3377 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
3311 3378 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
3312 3379 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
3313 3380 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
3314 3381 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
3315 3382 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
3316 3383 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
3317 3384 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
3318 3385 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
3319 3386 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
3320 3387 4.537135 TCTTGAGATTTACGAAGCCACT 57.463 40.909 0.00 0.00 0.00 4.00
3321 3388 4.245660 TCTTGAGATTTACGAAGCCACTG 58.754 43.478 0.00 0.00 0.00 3.66
3322 3389 3.678056 TGAGATTTACGAAGCCACTGT 57.322 42.857 0.00 0.00 0.00 3.55
3323 3390 4.794278 TGAGATTTACGAAGCCACTGTA 57.206 40.909 0.00 0.00 0.00 2.74
3324 3391 4.744570 TGAGATTTACGAAGCCACTGTAG 58.255 43.478 0.00 0.00 0.00 2.74
3325 3392 4.113354 GAGATTTACGAAGCCACTGTAGG 58.887 47.826 0.00 0.00 0.00 3.18
3334 3401 3.352447 CCACTGTAGGCATCTCGTG 57.648 57.895 0.00 0.00 0.00 4.35
3335 3402 0.179100 CCACTGTAGGCATCTCGTGG 60.179 60.000 0.00 0.00 36.36 4.94
3336 3403 0.532573 CACTGTAGGCATCTCGTGGT 59.467 55.000 0.00 0.00 0.00 4.16
3337 3404 0.818296 ACTGTAGGCATCTCGTGGTC 59.182 55.000 0.00 0.00 0.00 4.02
3338 3405 0.248661 CTGTAGGCATCTCGTGGTCG 60.249 60.000 0.00 0.00 38.55 4.79
3339 3406 0.678684 TGTAGGCATCTCGTGGTCGA 60.679 55.000 0.00 0.00 44.12 4.20
3340 3407 0.248539 GTAGGCATCTCGTGGTCGAC 60.249 60.000 7.13 7.13 41.35 4.20
3348 3415 2.260434 CGTGGTCGACGGGAACAT 59.740 61.111 9.92 0.00 45.92 2.71
3349 3416 1.804326 CGTGGTCGACGGGAACATC 60.804 63.158 9.92 0.00 45.92 3.06
3350 3417 1.590147 GTGGTCGACGGGAACATCT 59.410 57.895 9.92 0.00 45.92 2.90
3351 3418 0.458025 GTGGTCGACGGGAACATCTC 60.458 60.000 9.92 0.00 45.92 2.75
3352 3419 1.141234 GGTCGACGGGAACATCTCC 59.859 63.158 9.92 0.00 44.54 3.71
3353 3420 1.321074 GGTCGACGGGAACATCTCCT 61.321 60.000 9.92 0.00 44.68 3.69
3354 3421 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
3355 3422 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
3356 3423 1.823976 GACGGGAACATCTCCTCCC 59.176 63.158 0.00 0.00 46.97 4.30
3362 3429 3.652057 GGAACATCTCCTCCCATTGAA 57.348 47.619 0.00 0.00 41.61 2.69
3363 3430 3.968265 GGAACATCTCCTCCCATTGAAA 58.032 45.455 0.00 0.00 41.61 2.69
3364 3431 3.950395 GGAACATCTCCTCCCATTGAAAG 59.050 47.826 0.00 0.00 41.61 2.62
3365 3432 4.324563 GGAACATCTCCTCCCATTGAAAGA 60.325 45.833 0.00 0.00 41.61 2.52
3366 3433 4.934797 ACATCTCCTCCCATTGAAAGAA 57.065 40.909 0.00 0.00 0.00 2.52
3367 3434 4.853007 ACATCTCCTCCCATTGAAAGAAG 58.147 43.478 0.00 0.00 0.00 2.85
3368 3435 3.356529 TCTCCTCCCATTGAAAGAAGC 57.643 47.619 0.00 0.00 0.00 3.86
3369 3436 2.012673 CTCCTCCCATTGAAAGAAGCG 58.987 52.381 0.00 0.00 0.00 4.68
3370 3437 0.453390 CCTCCCATTGAAAGAAGCGC 59.547 55.000 0.00 0.00 0.00 5.92
3371 3438 1.167851 CTCCCATTGAAAGAAGCGCA 58.832 50.000 11.47 0.00 0.00 6.09
3372 3439 0.881118 TCCCATTGAAAGAAGCGCAC 59.119 50.000 11.47 2.78 0.00 5.34
3373 3440 0.109132 CCCATTGAAAGAAGCGCACC 60.109 55.000 11.47 0.00 0.00 5.01
3374 3441 0.454957 CCATTGAAAGAAGCGCACCG 60.455 55.000 11.47 0.00 0.00 4.94
3386 3453 3.508840 GCACCGCCGGAAATCCTG 61.509 66.667 11.71 0.00 0.00 3.86
3387 3454 2.267642 CACCGCCGGAAATCCTGA 59.732 61.111 11.71 0.00 0.00 3.86
3388 3455 1.376683 CACCGCCGGAAATCCTGAA 60.377 57.895 11.71 0.00 0.00 3.02
3389 3456 0.958382 CACCGCCGGAAATCCTGAAA 60.958 55.000 11.71 0.00 0.00 2.69
3390 3457 0.034477 ACCGCCGGAAATCCTGAAAT 60.034 50.000 11.71 0.00 0.00 2.17
3391 3458 1.210967 ACCGCCGGAAATCCTGAAATA 59.789 47.619 11.71 0.00 0.00 1.40
3392 3459 2.294074 CCGCCGGAAATCCTGAAATAA 58.706 47.619 5.05 0.00 0.00 1.40
3393 3460 2.685897 CCGCCGGAAATCCTGAAATAAA 59.314 45.455 5.05 0.00 0.00 1.40
3394 3461 3.317993 CCGCCGGAAATCCTGAAATAAAT 59.682 43.478 5.05 0.00 0.00 1.40
3395 3462 4.537015 CGCCGGAAATCCTGAAATAAATC 58.463 43.478 5.05 0.00 0.00 2.17
3396 3463 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
3397 3464 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
3398 3465 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
3399 3466 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
3409 3476 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
3410 3477 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
3411 3478 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
3412 3479 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
3413 3480 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
3414 3481 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
3415 3482 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
3416 3483 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
3417 3484 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
3418 3485 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
3419 3486 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
3420 3487 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
3421 3488 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
3422 3489 2.418368 AATGCGAGCACCAGGATTTA 57.582 45.000 0.00 0.00 0.00 1.40
3423 3490 2.418368 ATGCGAGCACCAGGATTTAA 57.582 45.000 0.00 0.00 0.00 1.52
3424 3491 2.192664 TGCGAGCACCAGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
3425 3492 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
3426 3493 1.132453 GCGAGCACCAGGATTTAAACC 59.868 52.381 0.00 0.00 0.00 3.27
3427 3494 1.743394 CGAGCACCAGGATTTAAACCC 59.257 52.381 0.00 0.00 0.00 4.11
3428 3495 2.618045 CGAGCACCAGGATTTAAACCCT 60.618 50.000 0.00 0.00 0.00 4.34
3429 3496 3.017442 GAGCACCAGGATTTAAACCCTC 58.983 50.000 0.00 0.00 0.00 4.30
3430 3497 1.743394 GCACCAGGATTTAAACCCTCG 59.257 52.381 0.00 0.00 0.00 4.63
3431 3498 2.878526 GCACCAGGATTTAAACCCTCGT 60.879 50.000 0.00 0.00 0.00 4.18
3432 3499 2.747446 CACCAGGATTTAAACCCTCGTG 59.253 50.000 11.49 11.49 35.84 4.35
3433 3500 2.290705 ACCAGGATTTAAACCCTCGTGG 60.291 50.000 20.00 20.00 45.78 4.94
3446 3513 1.191535 CTCGTGGGTTGAGGATACCA 58.808 55.000 0.00 0.00 37.40 3.25
3450 3517 2.038863 TGGGTTGAGGATACCACTGT 57.961 50.000 0.00 0.00 37.40 3.55
3451 3518 1.906574 TGGGTTGAGGATACCACTGTC 59.093 52.381 0.00 0.00 37.40 3.51
3452 3519 1.209747 GGGTTGAGGATACCACTGTCC 59.790 57.143 0.00 0.00 37.40 4.02
3453 3520 1.906574 GGTTGAGGATACCACTGTCCA 59.093 52.381 0.00 0.00 36.96 4.02
3454 3521 2.354805 GGTTGAGGATACCACTGTCCAC 60.355 54.545 0.00 0.00 36.96 4.02
3455 3522 1.568504 TGAGGATACCACTGTCCACC 58.431 55.000 0.00 0.00 36.96 4.61
3456 3523 1.078823 TGAGGATACCACTGTCCACCT 59.921 52.381 0.00 0.00 36.96 4.00
3457 3524 2.313643 TGAGGATACCACTGTCCACCTA 59.686 50.000 0.00 0.00 36.96 3.08
3458 3525 3.245839 TGAGGATACCACTGTCCACCTAA 60.246 47.826 0.00 0.00 36.96 2.69
3459 3526 3.105283 AGGATACCACTGTCCACCTAAC 58.895 50.000 0.00 0.00 36.96 2.34
3460 3527 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
3461 3528 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
3462 3529 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
3463 3530 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
3464 3531 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
3465 3532 2.550208 CCACTGTCCACCTAACCAACTC 60.550 54.545 0.00 0.00 0.00 3.01
3466 3533 2.104111 CACTGTCCACCTAACCAACTCA 59.896 50.000 0.00 0.00 0.00 3.41
3467 3534 2.775384 ACTGTCCACCTAACCAACTCAA 59.225 45.455 0.00 0.00 0.00 3.02
3468 3535 3.139077 CTGTCCACCTAACCAACTCAAC 58.861 50.000 0.00 0.00 0.00 3.18
3469 3536 2.158726 TGTCCACCTAACCAACTCAACC 60.159 50.000 0.00 0.00 0.00 3.77
3470 3537 2.128535 TCCACCTAACCAACTCAACCA 58.871 47.619 0.00 0.00 0.00 3.67
3471 3538 2.158726 TCCACCTAACCAACTCAACCAC 60.159 50.000 0.00 0.00 0.00 4.16
3472 3539 2.422235 CCACCTAACCAACTCAACCACA 60.422 50.000 0.00 0.00 0.00 4.17
3473 3540 3.486383 CACCTAACCAACTCAACCACAT 58.514 45.455 0.00 0.00 0.00 3.21
3474 3541 3.253188 CACCTAACCAACTCAACCACATG 59.747 47.826 0.00 0.00 0.00 3.21
3475 3542 3.117663 ACCTAACCAACTCAACCACATGT 60.118 43.478 0.00 0.00 0.00 3.21
3476 3543 3.888930 CCTAACCAACTCAACCACATGTT 59.111 43.478 0.00 0.00 37.80 2.71
3485 3552 2.282110 CCACATGTTGGTCCGCCA 60.282 61.111 0.00 0.00 44.38 5.69
3486 3553 2.334946 CCACATGTTGGTCCGCCAG 61.335 63.158 0.00 0.00 46.91 4.85
3487 3554 2.034066 ACATGTTGGTCCGCCAGG 59.966 61.111 0.00 0.00 46.91 4.45
3488 3555 2.350895 CATGTTGGTCCGCCAGGA 59.649 61.111 0.00 0.00 46.91 3.86
3504 3571 2.541588 CCAGGACAAGCAAAGTTGTTCG 60.542 50.000 0.00 0.00 40.42 3.95
3527 3594 2.237066 GCTGTTGCACCAAAACCGC 61.237 57.895 0.00 0.00 39.41 5.68
3528 3595 1.591327 CTGTTGCACCAAAACCGCC 60.591 57.895 0.00 0.00 0.00 6.13
3541 3820 0.323360 AACCGCCTATGGTGCAATGT 60.323 50.000 0.00 0.00 42.89 2.71
3570 3849 1.072159 CGGAGGGGCTGGATCAATC 59.928 63.158 0.00 0.00 0.00 2.67
3572 3851 1.458045 GAGGGGCTGGATCAATCCC 59.542 63.158 0.00 0.00 46.59 3.85
3576 3855 1.228228 GGCTGGATCAATCCCTGCA 59.772 57.895 19.07 0.00 46.59 4.41
3577 3856 1.105759 GGCTGGATCAATCCCTGCAC 61.106 60.000 19.07 9.72 46.59 4.57
3578 3857 1.442526 GCTGGATCAATCCCTGCACG 61.443 60.000 15.04 0.00 46.59 5.34
3581 3860 1.153086 GATCAATCCCTGCACGGCT 60.153 57.895 0.00 0.00 0.00 5.52
3582 3861 1.442526 GATCAATCCCTGCACGGCTG 61.443 60.000 0.00 0.00 0.00 4.85
3631 4047 1.126488 TGGTGATCCTGATCTCCTGC 58.874 55.000 22.15 4.29 46.36 4.85
3649 4065 1.745768 GCGAAATTTGGCATGAGCGC 61.746 55.000 18.93 10.12 43.41 5.92
3657 4073 0.605050 TGGCATGAGCGCAACAACTA 60.605 50.000 11.47 1.75 43.41 2.24
3676 4094 6.209589 ACAACTACACATTCAGAGAGAAGCTA 59.790 38.462 0.00 0.00 40.15 3.32
3696 4114 2.331893 CGGCCCAAAGCGATGTCAA 61.332 57.895 0.00 0.00 45.17 3.18
3700 4118 1.462616 CCCAAAGCGATGTCAATGGA 58.537 50.000 0.00 0.00 0.00 3.41
3701 4119 1.402968 CCCAAAGCGATGTCAATGGAG 59.597 52.381 0.00 0.00 0.00 3.86
3702 4120 1.202222 CCAAAGCGATGTCAATGGAGC 60.202 52.381 0.00 0.00 0.00 4.70
3703 4121 1.469703 CAAAGCGATGTCAATGGAGCA 59.530 47.619 0.00 0.00 0.00 4.26
3704 4122 1.825090 AAGCGATGTCAATGGAGCAA 58.175 45.000 0.00 0.00 0.00 3.91
3705 4123 2.048444 AGCGATGTCAATGGAGCAAT 57.952 45.000 0.00 0.00 0.00 3.56
3706 4124 1.945394 AGCGATGTCAATGGAGCAATC 59.055 47.619 0.00 0.00 0.00 2.67
3707 4125 1.672363 GCGATGTCAATGGAGCAATCA 59.328 47.619 0.00 0.00 0.00 2.57
3708 4126 2.286831 GCGATGTCAATGGAGCAATCAG 60.287 50.000 0.00 0.00 0.00 2.90
3727 4145 3.987868 TCAGAAGAAACGTCGAGAAATGG 59.012 43.478 0.00 0.00 0.00 3.16
3758 4176 2.094390 GCTGCAAAATTCATGGAGAGCA 60.094 45.455 14.35 0.00 38.38 4.26
3763 4181 4.161333 CAAAATTCATGGAGAGCACGTTC 58.839 43.478 0.00 0.00 0.00 3.95
3766 4184 1.079819 CATGGAGAGCACGTTCGGT 60.080 57.895 0.00 0.00 0.00 4.69
3850 4284 1.197721 CACTGGTCGCTTGATCAAACC 59.802 52.381 17.46 17.46 30.82 3.27
3861 4295 5.299949 GCTTGATCAAACCATGTTTTTCCT 58.700 37.500 9.88 0.00 0.00 3.36
3862 4296 5.178067 GCTTGATCAAACCATGTTTTTCCTG 59.822 40.000 9.88 0.00 0.00 3.86
3863 4297 6.477053 TTGATCAAACCATGTTTTTCCTGA 57.523 33.333 5.45 0.00 0.00 3.86
3864 4298 6.477053 TGATCAAACCATGTTTTTCCTGAA 57.523 33.333 0.00 0.00 0.00 3.02
3865 4299 6.514947 TGATCAAACCATGTTTTTCCTGAAG 58.485 36.000 0.00 0.00 0.00 3.02
3866 4300 5.275067 TCAAACCATGTTTTTCCTGAAGG 57.725 39.130 0.00 0.00 0.00 3.46
3867 4301 4.959210 TCAAACCATGTTTTTCCTGAAGGA 59.041 37.500 0.00 0.00 43.73 3.36
3876 4310 3.678921 TCCTGAAGGAACACGTGTG 57.321 52.632 24.16 7.50 42.18 3.82
3877 4311 0.531974 TCCTGAAGGAACACGTGTGC 60.532 55.000 24.16 21.51 42.18 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 3.849951 CCCAGCTACATCGCCGGT 61.850 66.667 1.90 0.00 0.00 5.28
169 183 2.290641 GGCGGCGAAAATAATGACTCAT 59.709 45.455 12.98 0.00 0.00 2.90
172 186 0.655733 CGGCGGCGAAAATAATGACT 59.344 50.000 29.19 0.00 0.00 3.41
247 283 1.204312 GCGCTTCTGTGGTCGTTTC 59.796 57.895 0.00 0.00 0.00 2.78
284 320 1.135939 CGCGTGGTCATCGTACAGA 59.864 57.895 0.00 0.00 0.00 3.41
285 321 1.872234 CCGCGTGGTCATCGTACAG 60.872 63.158 6.91 0.00 0.00 2.74
286 322 2.179767 CCGCGTGGTCATCGTACA 59.820 61.111 6.91 0.00 0.00 2.90
440 491 2.893404 ACACGCACACCACCGTTC 60.893 61.111 0.00 0.00 35.17 3.95
501 552 2.434185 GCGCATGTTCCCTCGTCA 60.434 61.111 0.30 0.00 0.00 4.35
588 639 4.619227 CCGAACCACCTGCCGTGT 62.619 66.667 0.89 0.00 41.26 4.49
723 774 2.897350 GTGCTAGCACCGATGGGC 60.897 66.667 33.32 9.21 40.79 5.36
1011 1063 2.342648 GGGTGAAAGACGGCGAGT 59.657 61.111 16.62 0.00 0.00 4.18
1076 1128 1.965754 GAGATTCAGGGAGGTGCGCT 61.966 60.000 9.73 0.00 40.97 5.92
1461 1528 1.486726 ACATCCTGAATCCTCCCGAAC 59.513 52.381 0.00 0.00 0.00 3.95
1515 1582 5.760253 CAGAGTGTTGAAGGTCACTATGTTT 59.240 40.000 10.46 0.00 44.00 2.83
1536 1603 2.872858 CTCGACATAGACGGACATCAGA 59.127 50.000 0.00 0.00 0.00 3.27
1563 1630 2.433970 CCTGAAGACCTCCTGGATCTTC 59.566 54.545 23.91 23.91 43.17 2.87
1570 1637 1.550976 GTACACCCTGAAGACCTCCTG 59.449 57.143 0.00 0.00 0.00 3.86
1653 1720 2.762459 TCCCCGGCGCTCTTGTAT 60.762 61.111 7.64 0.00 0.00 2.29
1714 1781 2.882876 GAGCTCGCCGTCCTTGTA 59.117 61.111 0.00 0.00 0.00 2.41
1743 1810 2.048222 TCTTGCTTCCAGTCCGCG 60.048 61.111 0.00 0.00 0.00 6.46
1749 1816 3.629398 ACTTGACAAAGTCTTGCTTCCAG 59.371 43.478 0.00 0.00 43.34 3.86
1753 1820 6.291377 TCTCATACTTGACAAAGTCTTGCTT 58.709 36.000 0.00 0.00 43.34 3.91
1822 1889 3.476031 CTGGGTTGTCCGCACCTGT 62.476 63.158 0.00 0.00 38.76 4.00
1869 1936 1.002134 CACCCCTGCTTCGTCCATT 60.002 57.895 0.00 0.00 0.00 3.16
1941 2008 3.091545 CTCCTTGGCAATGGTGTAATGT 58.908 45.455 0.00 0.00 0.00 2.71
1944 2011 1.075374 AGCTCCTTGGCAATGGTGTAA 59.925 47.619 0.00 0.00 34.17 2.41
1997 2064 3.064545 GCACACTGACAAGCTTATCATCC 59.935 47.826 8.09 0.00 0.00 3.51
2025 2092 0.984432 TGCCCATGAGCCAGATCAGA 60.984 55.000 0.00 0.00 31.44 3.27
2100 2167 1.298859 ACAGATTGTTCGGCTTCGGC 61.299 55.000 0.00 0.00 40.88 5.54
2139 2206 2.094417 GCTGAGTAGGACGTTGAAATGC 59.906 50.000 0.00 0.00 0.00 3.56
2154 2221 2.047465 CTCTTGGCAGCGCTGAGT 60.047 61.111 40.21 0.00 0.00 3.41
2194 2261 0.459489 ATCTTCTCGAGCAGCCTCAC 59.541 55.000 7.81 0.00 38.00 3.51
2298 2365 1.116308 TCCTCTTGAACGTGTCCACA 58.884 50.000 0.00 0.00 0.00 4.17
2315 2382 1.536662 AGCCCCCGGTCTATCATCC 60.537 63.158 0.00 0.00 0.00 3.51
2325 2392 3.646715 TCTGGTTTCAGCCCCCGG 61.647 66.667 0.00 0.00 40.69 5.73
2391 2458 2.023461 CTCAGCGCCTCGTCGTAG 59.977 66.667 2.29 0.00 0.00 3.51
2493 2560 1.003839 GTCCGCCTTGTCATGGTCA 60.004 57.895 6.62 0.00 0.00 4.02
2502 2569 1.901650 GAAGAACTGCGTCCGCCTTG 61.902 60.000 9.43 2.35 41.09 3.61
2530 2597 0.318275 GGCTCTATCTTCGCGGACAG 60.318 60.000 6.13 0.00 0.00 3.51
2556 2623 0.032815 TGATCGCGTTGAAGGTCACA 59.967 50.000 5.77 0.00 0.00 3.58
2604 2671 0.679505 TCCTGTGGAACCACTCGAAG 59.320 55.000 21.98 12.27 46.30 3.79
2640 2707 4.838486 GTGACCTCGCTCGGCTCG 62.838 72.222 0.00 0.00 0.00 5.03
2649 2716 3.119137 TCAACACCTGATATGTGACCTCG 60.119 47.826 0.00 0.00 37.18 4.63
2691 2758 0.893727 AGGCAAGTTTGGGCTTACCG 60.894 55.000 0.00 0.00 44.64 4.02
2816 2883 0.032017 AGGCCGAAGACCCAGAGTAT 60.032 55.000 0.00 0.00 0.00 2.12
2838 2905 3.009033 TCTTGACGGATCCACTTCCATTT 59.991 43.478 13.41 0.00 35.34 2.32
2879 2946 4.850680 ACACCCTCAACAACAAGAAGTTA 58.149 39.130 0.00 0.00 38.74 2.24
2906 2973 0.606604 AATGCTTTCTGCTGCAAGGG 59.393 50.000 3.02 0.00 42.74 3.95
3001 3068 2.633509 GCAAGGCTCCTGCTGGTTG 61.634 63.158 9.73 7.80 39.59 3.77
3063 3130 3.928992 CACTACTTGTGGTGTATGCAGAG 59.071 47.826 8.75 0.00 42.68 3.35
3076 3143 2.607282 GCAGACAGTACGCACTACTTGT 60.607 50.000 0.00 0.00 32.90 3.16
3082 3149 0.389391 ACTTGCAGACAGTACGCACT 59.611 50.000 0.00 0.00 34.87 4.40
3083 3150 0.784778 GACTTGCAGACAGTACGCAC 59.215 55.000 0.00 0.00 34.87 5.34
3102 3169 2.202623 GTGGCCTCTGTCGTAGCG 60.203 66.667 3.32 0.00 0.00 4.26
3112 3179 0.539986 TTCTTGTATCCCGTGGCCTC 59.460 55.000 3.32 0.00 0.00 4.70
3135 3202 1.152860 TGCCCACGCTTTCCAGAAA 60.153 52.632 0.00 0.00 35.36 2.52
3160 3227 2.026945 AAACTTTGCTTGCCCCGGTG 62.027 55.000 0.00 0.00 0.00 4.94
3161 3228 1.334384 AAAACTTTGCTTGCCCCGGT 61.334 50.000 0.00 0.00 0.00 5.28
3162 3229 0.179059 AAAAACTTTGCTTGCCCCGG 60.179 50.000 0.00 0.00 0.00 5.73
3163 3230 3.377933 AAAAACTTTGCTTGCCCCG 57.622 47.368 0.00 0.00 0.00 5.73
3179 3246 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
3180 3247 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
3181 3248 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
3182 3249 4.511454 GCTTGTGTCTGTACTGATGTTCAA 59.489 41.667 5.69 8.15 0.00 2.69
3183 3250 4.058124 GCTTGTGTCTGTACTGATGTTCA 58.942 43.478 5.69 0.00 0.00 3.18
3184 3251 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
3185 3252 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
3186 3253 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
3187 3254 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3188 3255 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
3189 3256 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
3190 3257 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3191 3258 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3192 3259 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
3193 3260 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
3194 3261 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
3195 3262 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
3196 3263 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
3197 3264 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
3198 3265 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
3199 3266 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
3200 3267 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
3201 3268 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
3202 3269 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
3203 3270 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
3206 3273 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
3207 3274 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
3208 3275 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
3209 3276 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
3210 3277 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
3211 3278 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3212 3279 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3213 3280 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3214 3281 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3215 3282 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3216 3283 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3217 3284 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
3218 3285 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
3219 3286 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
3220 3287 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
3221 3288 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
3222 3289 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
3223 3290 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
3224 3291 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
3225 3292 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
3226 3293 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
3227 3294 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
3228 3295 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
3229 3296 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
3230 3297 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
3231 3298 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
3232 3299 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
3233 3300 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
3234 3301 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
3235 3302 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
3236 3303 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
3237 3304 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
3238 3305 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
3239 3306 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
3242 3309 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
3243 3310 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
3244 3311 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
3245 3312 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
3246 3313 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
3247 3314 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
3248 3315 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
3249 3316 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
3250 3317 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
3251 3318 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
3252 3319 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
3253 3320 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
3254 3321 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
3255 3322 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
3256 3323 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
3257 3324 1.967066 CAGAGGTGCTCATAGGGGTAG 59.033 57.143 0.00 0.00 32.06 3.18
3258 3325 1.573857 TCAGAGGTGCTCATAGGGGTA 59.426 52.381 0.00 0.00 32.06 3.69
3259 3326 0.339859 TCAGAGGTGCTCATAGGGGT 59.660 55.000 0.00 0.00 32.06 4.95
3260 3327 1.047002 CTCAGAGGTGCTCATAGGGG 58.953 60.000 0.00 0.00 32.06 4.79
3261 3328 2.079170 TCTCAGAGGTGCTCATAGGG 57.921 55.000 0.00 0.00 32.06 3.53
3262 3329 3.450457 AGTTTCTCAGAGGTGCTCATAGG 59.550 47.826 0.00 0.00 32.06 2.57
3263 3330 4.159321 TCAGTTTCTCAGAGGTGCTCATAG 59.841 45.833 0.00 0.00 32.06 2.23
3264 3331 4.089361 TCAGTTTCTCAGAGGTGCTCATA 58.911 43.478 0.00 0.00 32.06 2.15
3265 3332 2.902486 TCAGTTTCTCAGAGGTGCTCAT 59.098 45.455 0.00 0.00 32.06 2.90
3266 3333 2.298446 CTCAGTTTCTCAGAGGTGCTCA 59.702 50.000 0.00 0.00 32.06 4.26
3267 3334 2.930455 GCTCAGTTTCTCAGAGGTGCTC 60.930 54.545 0.00 0.00 31.57 4.26
3268 3335 1.001860 GCTCAGTTTCTCAGAGGTGCT 59.998 52.381 0.00 0.00 31.57 4.40
3269 3336 1.437625 GCTCAGTTTCTCAGAGGTGC 58.562 55.000 0.00 0.00 31.57 5.01
3270 3337 1.671261 CGGCTCAGTTTCTCAGAGGTG 60.671 57.143 0.00 0.00 31.57 4.00
3271 3338 0.605589 CGGCTCAGTTTCTCAGAGGT 59.394 55.000 0.00 0.00 31.57 3.85
3272 3339 0.108424 CCGGCTCAGTTTCTCAGAGG 60.108 60.000 0.00 0.00 31.57 3.69
3273 3340 0.739112 GCCGGCTCAGTTTCTCAGAG 60.739 60.000 22.15 0.00 33.62 3.35
3274 3341 1.293498 GCCGGCTCAGTTTCTCAGA 59.707 57.895 22.15 0.00 0.00 3.27
3275 3342 0.392193 ATGCCGGCTCAGTTTCTCAG 60.392 55.000 29.70 0.00 0.00 3.35
3276 3343 0.901827 TATGCCGGCTCAGTTTCTCA 59.098 50.000 29.70 2.45 0.00 3.27
3277 3344 2.139118 GATATGCCGGCTCAGTTTCTC 58.861 52.381 29.70 9.05 0.00 2.87
3278 3345 1.486310 TGATATGCCGGCTCAGTTTCT 59.514 47.619 29.70 3.16 0.00 2.52
3279 3346 1.953559 TGATATGCCGGCTCAGTTTC 58.046 50.000 29.70 15.47 0.00 2.78
3280 3347 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
3281 3348 1.696336 AGATGATATGCCGGCTCAGTT 59.304 47.619 29.70 9.04 0.00 3.16
3282 3349 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
3283 3350 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
3284 3351 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
3285 3352 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
3286 3353 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
3287 3354 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
3288 3355 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
3289 3356 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
3290 3357 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
3291 3358 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
3292 3359 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
3293 3360 7.386299 GTGGCTTCGTAAATCTCAAGATGATAT 59.614 37.037 0.00 0.00 34.49 1.63
3294 3361 6.701841 GTGGCTTCGTAAATCTCAAGATGATA 59.298 38.462 0.00 0.00 34.49 2.15
3295 3362 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
3296 3363 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
3297 3364 4.872691 AGTGGCTTCGTAAATCTCAAGATG 59.127 41.667 0.00 0.00 34.49 2.90
3298 3365 4.872691 CAGTGGCTTCGTAAATCTCAAGAT 59.127 41.667 0.00 0.00 36.07 2.40
3299 3366 4.245660 CAGTGGCTTCGTAAATCTCAAGA 58.754 43.478 0.00 0.00 0.00 3.02
3300 3367 3.997021 ACAGTGGCTTCGTAAATCTCAAG 59.003 43.478 0.00 0.00 0.00 3.02
3301 3368 4.002906 ACAGTGGCTTCGTAAATCTCAA 57.997 40.909 0.00 0.00 0.00 3.02
3302 3369 3.678056 ACAGTGGCTTCGTAAATCTCA 57.322 42.857 0.00 0.00 0.00 3.27
3303 3370 4.113354 CCTACAGTGGCTTCGTAAATCTC 58.887 47.826 0.00 0.00 0.00 2.75
3304 3371 4.124851 CCTACAGTGGCTTCGTAAATCT 57.875 45.455 0.00 0.00 0.00 2.40
3316 3383 0.179100 CCACGAGATGCCTACAGTGG 60.179 60.000 0.00 3.88 42.31 4.00
3317 3384 0.532573 ACCACGAGATGCCTACAGTG 59.467 55.000 0.00 0.00 0.00 3.66
3318 3385 0.818296 GACCACGAGATGCCTACAGT 59.182 55.000 0.00 0.00 0.00 3.55
3319 3386 0.248661 CGACCACGAGATGCCTACAG 60.249 60.000 0.00 0.00 42.66 2.74
3320 3387 0.678684 TCGACCACGAGATGCCTACA 60.679 55.000 0.00 0.00 43.81 2.74
3321 3388 2.104267 TCGACCACGAGATGCCTAC 58.896 57.895 0.00 0.00 43.81 3.18
3322 3389 4.649845 TCGACCACGAGATGCCTA 57.350 55.556 0.00 0.00 43.81 3.93
3332 3399 0.458025 GAGATGTTCCCGTCGACCAC 60.458 60.000 10.58 2.51 0.00 4.16
3333 3400 1.601419 GGAGATGTTCCCGTCGACCA 61.601 60.000 10.58 1.52 40.37 4.02
3334 3401 1.141234 GGAGATGTTCCCGTCGACC 59.859 63.158 10.58 0.00 40.37 4.79
3335 3402 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
3343 3410 4.848357 TCTTTCAATGGGAGGAGATGTTC 58.152 43.478 0.00 0.00 0.00 3.18
3344 3411 4.934797 TCTTTCAATGGGAGGAGATGTT 57.065 40.909 0.00 0.00 0.00 2.71
3345 3412 4.853007 CTTCTTTCAATGGGAGGAGATGT 58.147 43.478 0.00 0.00 0.00 3.06
3346 3413 3.631227 GCTTCTTTCAATGGGAGGAGATG 59.369 47.826 0.00 0.00 0.00 2.90
3347 3414 3.683847 CGCTTCTTTCAATGGGAGGAGAT 60.684 47.826 0.00 0.00 0.00 2.75
3348 3415 2.355108 CGCTTCTTTCAATGGGAGGAGA 60.355 50.000 0.00 0.00 0.00 3.71
3349 3416 2.012673 CGCTTCTTTCAATGGGAGGAG 58.987 52.381 0.00 0.00 0.00 3.69
3350 3417 1.950484 GCGCTTCTTTCAATGGGAGGA 60.950 52.381 0.00 0.00 0.00 3.71
3351 3418 0.453390 GCGCTTCTTTCAATGGGAGG 59.547 55.000 0.00 0.00 0.00 4.30
3352 3419 1.135575 GTGCGCTTCTTTCAATGGGAG 60.136 52.381 9.73 0.00 0.00 4.30
3353 3420 0.881118 GTGCGCTTCTTTCAATGGGA 59.119 50.000 9.73 0.00 0.00 4.37
3354 3421 0.109132 GGTGCGCTTCTTTCAATGGG 60.109 55.000 9.73 0.00 0.00 4.00
3355 3422 0.454957 CGGTGCGCTTCTTTCAATGG 60.455 55.000 9.73 0.00 0.00 3.16
3356 3423 3.005823 CGGTGCGCTTCTTTCAATG 57.994 52.632 9.73 0.00 0.00 2.82
3369 3436 3.508840 CAGGATTTCCGGCGGTGC 61.509 66.667 27.32 12.48 42.08 5.01
3370 3437 0.958382 TTTCAGGATTTCCGGCGGTG 60.958 55.000 27.32 15.79 42.08 4.94
3371 3438 0.034477 ATTTCAGGATTTCCGGCGGT 60.034 50.000 27.32 6.51 42.08 5.68
3372 3439 1.961793 TATTTCAGGATTTCCGGCGG 58.038 50.000 22.51 22.51 42.08 6.13
3373 3440 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
3374 3441 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
3375 3442 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
3383 3450 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
3384 3451 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
3385 3452 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
3386 3453 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
3387 3454 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
3388 3455 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
3389 3456 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
3390 3457 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
3391 3458 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
3392 3459 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
3393 3460 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
3394 3461 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
3395 3462 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
3396 3463 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
3397 3464 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
3398 3465 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
3399 3466 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
3400 3467 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
3401 3468 2.645838 AATCCTGGTGCTCGCATTAT 57.354 45.000 0.00 0.00 0.00 1.28
3402 3469 2.418368 AAATCCTGGTGCTCGCATTA 57.582 45.000 0.00 0.00 0.00 1.90
3403 3470 2.418368 TAAATCCTGGTGCTCGCATT 57.582 45.000 0.00 0.00 0.00 3.56
3404 3471 2.418368 TTAAATCCTGGTGCTCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
3405 3472 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
3406 3473 1.132453 GGTTTAAATCCTGGTGCTCGC 59.868 52.381 0.00 0.00 0.00 5.03
3407 3474 1.743394 GGGTTTAAATCCTGGTGCTCG 59.257 52.381 10.45 0.00 0.00 5.03
3408 3475 3.017442 GAGGGTTTAAATCCTGGTGCTC 58.983 50.000 24.94 5.61 40.40 4.26
3409 3476 2.618045 CGAGGGTTTAAATCCTGGTGCT 60.618 50.000 24.94 0.00 40.40 4.40
3410 3477 1.743394 CGAGGGTTTAAATCCTGGTGC 59.257 52.381 24.94 9.14 40.40 5.01
3411 3478 3.067684 ACGAGGGTTTAAATCCTGGTG 57.932 47.619 28.36 18.18 45.14 4.17
3413 3480 2.365582 CCACGAGGGTTTAAATCCTGG 58.634 52.381 24.94 24.22 40.40 4.45
3427 3494 1.134788 GTGGTATCCTCAACCCACGAG 60.135 57.143 0.00 0.00 38.14 4.18
3428 3495 0.899720 GTGGTATCCTCAACCCACGA 59.100 55.000 0.00 0.00 38.14 4.35
3429 3496 3.453559 GTGGTATCCTCAACCCACG 57.546 57.895 0.00 0.00 38.14 4.94
3430 3497 1.628846 ACAGTGGTATCCTCAACCCAC 59.371 52.381 0.00 0.00 46.17 4.61
3431 3498 1.906574 GACAGTGGTATCCTCAACCCA 59.093 52.381 0.00 0.00 36.06 4.51
3432 3499 1.209747 GGACAGTGGTATCCTCAACCC 59.790 57.143 0.00 0.00 36.06 4.11
3433 3500 1.906574 TGGACAGTGGTATCCTCAACC 59.093 52.381 0.00 0.00 35.86 3.77
3434 3501 2.354805 GGTGGACAGTGGTATCCTCAAC 60.355 54.545 0.00 0.00 35.86 3.18
3435 3502 1.906574 GGTGGACAGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
3436 3503 1.078823 AGGTGGACAGTGGTATCCTCA 59.921 52.381 0.00 0.00 35.86 3.86
3437 3504 1.867363 AGGTGGACAGTGGTATCCTC 58.133 55.000 0.00 0.00 35.86 3.71
3438 3505 3.105283 GTTAGGTGGACAGTGGTATCCT 58.895 50.000 0.00 0.00 35.86 3.24
3439 3506 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
3440 3507 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
3441 3508 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
3442 3509 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
3443 3510 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
3444 3511 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
3445 3512 2.104111 TGAGTTGGTTAGGTGGACAGTG 59.896 50.000 0.00 0.00 0.00 3.66
3446 3513 2.404559 TGAGTTGGTTAGGTGGACAGT 58.595 47.619 0.00 0.00 0.00 3.55
3447 3514 3.139077 GTTGAGTTGGTTAGGTGGACAG 58.861 50.000 0.00 0.00 0.00 3.51
3448 3515 2.158726 GGTTGAGTTGGTTAGGTGGACA 60.159 50.000 0.00 0.00 0.00 4.02
3449 3516 2.158726 TGGTTGAGTTGGTTAGGTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
3450 3517 2.128535 TGGTTGAGTTGGTTAGGTGGA 58.871 47.619 0.00 0.00 0.00 4.02
3451 3518 2.227194 GTGGTTGAGTTGGTTAGGTGG 58.773 52.381 0.00 0.00 0.00 4.61
3452 3519 2.925724 TGTGGTTGAGTTGGTTAGGTG 58.074 47.619 0.00 0.00 0.00 4.00
3453 3520 3.117663 ACATGTGGTTGAGTTGGTTAGGT 60.118 43.478 0.00 0.00 0.00 3.08
3454 3521 3.486383 ACATGTGGTTGAGTTGGTTAGG 58.514 45.455 0.00 0.00 0.00 2.69
3479 3546 1.600636 CTTTGCTTGTCCTGGCGGA 60.601 57.895 0.00 0.00 36.83 5.54
3480 3547 1.455383 AACTTTGCTTGTCCTGGCGG 61.455 55.000 0.00 0.00 0.00 6.13
3481 3548 0.318107 CAACTTTGCTTGTCCTGGCG 60.318 55.000 0.00 0.00 0.00 5.69
3482 3549 0.746659 ACAACTTTGCTTGTCCTGGC 59.253 50.000 0.00 0.00 27.41 4.85
3483 3550 2.541588 CGAACAACTTTGCTTGTCCTGG 60.542 50.000 0.00 0.00 33.03 4.45
3484 3551 2.719798 CGAACAACTTTGCTTGTCCTG 58.280 47.619 0.00 0.00 33.03 3.86
3485 3552 1.065551 GCGAACAACTTTGCTTGTCCT 59.934 47.619 0.00 0.00 33.03 3.85
3486 3553 1.202245 TGCGAACAACTTTGCTTGTCC 60.202 47.619 0.00 0.00 37.64 4.02
3487 3554 2.187351 TGCGAACAACTTTGCTTGTC 57.813 45.000 0.00 0.00 37.64 3.18
3488 3555 2.462889 CATGCGAACAACTTTGCTTGT 58.537 42.857 0.00 0.00 37.25 3.16
3504 3571 0.532417 TTTTGGTGCAACAGCCATGC 60.532 50.000 3.79 0.00 44.08 4.06
3527 3594 2.941064 CAGTCTGACATTGCACCATAGG 59.059 50.000 10.88 0.00 0.00 2.57
3528 3595 2.353889 GCAGTCTGACATTGCACCATAG 59.646 50.000 14.85 0.00 37.75 2.23
3541 3820 2.583441 CCCCTCCGTTGCAGTCTGA 61.583 63.158 3.32 0.00 0.00 3.27
3593 4009 2.567169 CCATGGATCTAATACTCCGCCA 59.433 50.000 5.56 0.00 34.05 5.69
3595 4011 3.258372 TCACCATGGATCTAATACTCCGC 59.742 47.826 21.47 0.00 34.05 5.54
3598 4014 6.438741 TCAGGATCACCATGGATCTAATACTC 59.561 42.308 21.47 1.71 42.63 2.59
3599 4015 6.326161 TCAGGATCACCATGGATCTAATACT 58.674 40.000 21.47 7.09 42.63 2.12
3603 4019 5.409712 AGATCAGGATCACCATGGATCTAA 58.590 41.667 21.47 2.49 42.84 2.10
3631 4047 0.456482 TGCGCTCATGCCAAATTTCG 60.456 50.000 9.73 0.00 35.36 3.46
3649 4065 6.347240 GCTTCTCTCTGAATGTGTAGTTGTTG 60.347 42.308 0.00 0.00 33.71 3.33
3657 4073 3.119316 CGGTAGCTTCTCTCTGAATGTGT 60.119 47.826 0.00 0.00 33.71 3.72
3676 4094 4.344865 ACATCGCTTTGGGCCGGT 62.345 61.111 1.90 0.00 37.74 5.28
3696 4114 3.679389 ACGTTTCTTCTGATTGCTCCAT 58.321 40.909 0.00 0.00 0.00 3.41
3700 4118 2.989840 CTCGACGTTTCTTCTGATTGCT 59.010 45.455 0.00 0.00 0.00 3.91
3701 4119 2.987149 TCTCGACGTTTCTTCTGATTGC 59.013 45.455 0.00 0.00 0.00 3.56
3702 4120 5.576337 TTTCTCGACGTTTCTTCTGATTG 57.424 39.130 0.00 0.00 0.00 2.67
3703 4121 5.120830 CCATTTCTCGACGTTTCTTCTGATT 59.879 40.000 0.00 0.00 0.00 2.57
3704 4122 4.627467 CCATTTCTCGACGTTTCTTCTGAT 59.373 41.667 0.00 0.00 0.00 2.90
3705 4123 3.987868 CCATTTCTCGACGTTTCTTCTGA 59.012 43.478 0.00 0.00 0.00 3.27
3706 4124 3.423645 GCCATTTCTCGACGTTTCTTCTG 60.424 47.826 0.00 0.00 0.00 3.02
3707 4125 2.737252 GCCATTTCTCGACGTTTCTTCT 59.263 45.455 0.00 0.00 0.00 2.85
3708 4126 2.472397 CGCCATTTCTCGACGTTTCTTC 60.472 50.000 0.00 0.00 0.00 2.87
3738 4156 3.508762 GTGCTCTCCATGAATTTTGCAG 58.491 45.455 0.00 0.00 0.00 4.41
3747 4165 1.215382 CCGAACGTGCTCTCCATGA 59.785 57.895 0.00 0.00 34.47 3.07
3758 4176 0.731514 CACGCTATGTCACCGAACGT 60.732 55.000 0.00 0.00 0.00 3.99
3763 4181 0.867753 GCTCTCACGCTATGTCACCG 60.868 60.000 0.00 0.00 0.00 4.94
3766 4184 1.676529 GTAGGCTCTCACGCTATGTCA 59.323 52.381 0.00 0.00 0.00 3.58
3795 4229 6.830912 AGAAAGAAATGGAAAGAAAAAGGGG 58.169 36.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.