Multiple sequence alignment - TraesCS3B01G422200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G422200 chr3B 100.000 3413 0 0 1 3413 659082162 659078750 0.000000e+00 6303.0
1 TraesCS3B01G422200 chr3B 84.307 1746 215 26 717 2418 815873041 815871311 0.000000e+00 1652.0
2 TraesCS3B01G422200 chr3B 87.103 1101 141 1 1340 2439 683759975 683761075 0.000000e+00 1245.0
3 TraesCS3B01G422200 chr3B 87.091 1100 142 0 1340 2439 684096977 684098076 0.000000e+00 1245.0
4 TraesCS3B01G422200 chr3B 86.818 1100 145 0 1340 2439 684041623 684042722 0.000000e+00 1229.0
5 TraesCS3B01G422200 chr3B 77.389 314 45 18 366 658 815877036 815876728 2.730000e-36 163.0
6 TraesCS3B01G422200 chr3B 82.895 152 22 4 3228 3375 684108728 684108879 2.140000e-27 134.0
7 TraesCS3B01G422200 chr3B 100.000 30 0 0 2897 2926 659079202 659079173 4.760000e-04 56.5
8 TraesCS3B01G422200 chr3B 100.000 30 0 0 2961 2990 659079266 659079237 4.760000e-04 56.5
9 TraesCS3B01G422200 chr3A 92.365 3196 166 38 3 3161 638335624 638332470 0.000000e+00 4479.0
10 TraesCS3B01G422200 chr3A 83.181 1748 231 26 717 2423 737970052 737968327 0.000000e+00 1541.0
11 TraesCS3B01G422200 chr3A 95.475 221 10 0 3191 3411 635785315 635785535 1.510000e-93 353.0
12 TraesCS3B01G422200 chr3A 77.841 352 52 20 331 662 737973990 737973645 9.660000e-46 195.0
13 TraesCS3B01G422200 chr3A 91.860 86 7 0 2881 2966 636120110 636120195 1.660000e-23 121.0
14 TraesCS3B01G422200 chr3A 100.000 30 0 0 2897 2926 638332676 638332647 4.760000e-04 56.5
15 TraesCS3B01G422200 chr3A 100.000 30 0 0 2961 2990 638332740 638332711 4.760000e-04 56.5
16 TraesCS3B01G422200 chr3D 91.905 2730 142 36 150 2852 498208444 498205767 0.000000e+00 3744.0
17 TraesCS3B01G422200 chr3D 83.686 1747 223 25 717 2421 606299498 606301224 0.000000e+00 1591.0
18 TraesCS3B01G422200 chr3D 86.818 1100 144 1 1340 2439 519354386 519355484 0.000000e+00 1227.0
19 TraesCS3B01G422200 chr3D 96.491 228 6 2 3187 3413 498118428 498118202 3.220000e-100 375.0
20 TraesCS3B01G422200 chr3D 90.179 224 19 2 3191 3413 498139196 498138975 4.310000e-74 289.0
21 TraesCS3B01G422200 chr3D 89.000 200 22 0 2222 2421 519375945 519376144 7.310000e-62 248.0
22 TraesCS3B01G422200 chr3D 95.918 147 6 0 3 149 498208625 498208479 4.400000e-59 239.0
23 TraesCS3B01G422200 chr3D 96.212 132 5 0 3001 3132 498204884 498204753 2.060000e-52 217.0
24 TraesCS3B01G422200 chr3D 82.320 181 28 4 3228 3404 519388884 519389064 1.640000e-33 154.0
25 TraesCS3B01G422200 chr3D 76.821 302 47 11 395 674 606296129 606296429 7.630000e-32 148.0
26 TraesCS3B01G422200 chr3D 88.430 121 13 1 2850 2970 498205258 498205139 9.870000e-31 145.0
27 TraesCS3B01G422200 chr3D 86.538 104 11 3 352 455 606296356 606296456 1.000000e-20 111.0
28 TraesCS3B01G422200 chr3D 82.540 126 20 2 3228 3351 519383886 519384011 3.600000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G422200 chr3B 659078750 659082162 3412 True 2138.666667 6303 100.000000 1 3413 3 chr3B.!!$R1 3412
1 TraesCS3B01G422200 chr3B 683759975 683761075 1100 False 1245.000000 1245 87.103000 1340 2439 1 chr3B.!!$F1 1099
2 TraesCS3B01G422200 chr3B 684096977 684098076 1099 False 1245.000000 1245 87.091000 1340 2439 1 chr3B.!!$F3 1099
3 TraesCS3B01G422200 chr3B 684041623 684042722 1099 False 1229.000000 1229 86.818000 1340 2439 1 chr3B.!!$F2 1099
4 TraesCS3B01G422200 chr3B 815871311 815877036 5725 True 907.500000 1652 80.848000 366 2418 2 chr3B.!!$R2 2052
5 TraesCS3B01G422200 chr3A 638332470 638335624 3154 True 1530.666667 4479 97.455000 3 3161 3 chr3A.!!$R1 3158
6 TraesCS3B01G422200 chr3A 737968327 737973990 5663 True 868.000000 1541 80.511000 331 2423 2 chr3A.!!$R2 2092
7 TraesCS3B01G422200 chr3D 519354386 519355484 1098 False 1227.000000 1227 86.818000 1340 2439 1 chr3D.!!$F1 1099
8 TraesCS3B01G422200 chr3D 498204753 498208625 3872 True 1086.250000 3744 93.116250 3 3132 4 chr3D.!!$R3 3129
9 TraesCS3B01G422200 chr3D 606296129 606301224 5095 False 616.666667 1591 82.348333 352 2421 3 chr3D.!!$F5 2069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.034089 AGGCAGCCACATTTACCCTC 60.034 55.000 15.80 0.0 0.0 4.30 F
99 100 1.037579 GGCAGCCACATTTACCCTCC 61.038 60.000 6.55 0.0 0.0 4.30 F
1880 5762 1.146774 TGACTTGCTGGGAAATGGGAA 59.853 47.619 0.00 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 5706 0.179073 CGCCAGATCGTCCAATCCTT 60.179 55.0 0.00 0.00 0.00 3.36 R
1986 5868 0.465097 CAGCAGCAGGGTCCATAAGG 60.465 60.0 0.00 0.00 0.00 2.69 R
3382 8028 0.033504 GGGTGACGGCATATGATCGT 59.966 55.0 19.54 19.54 39.99 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.991146 TCTGGAGGCAGCCACATTTA 59.009 50.000 15.80 0.00 33.52 1.40
98 99 0.034089 AGGCAGCCACATTTACCCTC 60.034 55.000 15.80 0.00 0.00 4.30
99 100 1.037579 GGCAGCCACATTTACCCTCC 61.038 60.000 6.55 0.00 0.00 4.30
151 187 6.426328 GCTCATCAACAATCTTAGATACAGGG 59.574 42.308 0.00 0.00 0.00 4.45
167 203 4.999939 GGCCGTGCACGCCTTTTG 63.000 66.667 33.17 19.18 38.18 2.44
168 204 4.999939 GCCGTGCACGCCTTTTGG 63.000 66.667 33.17 18.44 44.18 3.28
198 235 9.525826 AAAGTTCAGGATTCTTGATGTCTATTT 57.474 29.630 0.00 0.00 0.00 1.40
289 335 2.494059 ACTGCTGTTATGCTTTCGTGT 58.506 42.857 0.00 0.00 0.00 4.49
318 364 7.144000 GTGAAATAGGATCCTTTCATTCATGC 58.856 38.462 24.95 12.10 41.80 4.06
324 370 3.829886 TCCTTTCATTCATGCAACGTC 57.170 42.857 0.00 0.00 0.00 4.34
390 436 9.832445 ATATGATTACATTCTTAACTGAACCGT 57.168 29.630 0.00 0.00 37.87 4.83
421 467 2.202479 GTTCCCGCGCAATTGAGC 60.202 61.111 22.54 22.54 37.50 4.26
685 4540 8.359642 TGCAGTTGAGTAGCTCATTTAAATTTT 58.640 29.630 0.00 0.00 40.39 1.82
1109 4990 6.142818 TGAACAAACTTCGGAACAATCAAT 57.857 33.333 0.00 0.00 0.00 2.57
1121 5002 4.202090 GGAACAATCAATGGAGGAAGCATC 60.202 45.833 0.00 0.00 0.00 3.91
1181 5062 4.948004 TCTAGTCAGCTCTTCGGTTAATGA 59.052 41.667 0.00 0.00 0.00 2.57
1204 5085 4.246712 AGTCTTCCTAATACCGGTCAGA 57.753 45.455 12.40 0.00 0.00 3.27
1216 5097 1.620819 CCGGTCAGATTGATAGGGAGG 59.379 57.143 0.00 0.00 0.00 4.30
1217 5098 2.320781 CGGTCAGATTGATAGGGAGGT 58.679 52.381 0.00 0.00 0.00 3.85
1233 5114 3.420893 GGAGGTTGACATTGACAATGGA 58.579 45.455 27.46 13.89 43.21 3.41
1366 5247 2.619849 CCAAGATTGGGTGATGTCTGCT 60.620 50.000 3.52 0.00 44.70 4.24
1429 5310 5.105473 GGATTCCCCAGAATAATATCGTCGA 60.105 44.000 0.00 0.00 42.93 4.20
1437 5318 6.813649 CCAGAATAATATCGTCGACATCCATT 59.186 38.462 17.16 10.92 0.00 3.16
1632 5514 1.546029 GTTGGCCTTCTTCATTCACCC 59.454 52.381 3.32 0.00 0.00 4.61
1683 5565 2.108952 AGCCCTCCTCAATTTGTCACTT 59.891 45.455 0.00 0.00 0.00 3.16
1824 5706 9.322773 CTCTCATTTATTGAAGATAACAGAGCA 57.677 33.333 0.00 0.00 32.78 4.26
1860 5742 1.445582 CGCCGTAAAGCCTCTCGTT 60.446 57.895 0.00 0.00 0.00 3.85
1880 5762 1.146774 TGACTTGCTGGGAAATGGGAA 59.853 47.619 0.00 0.00 0.00 3.97
1905 5787 2.232941 ACGAGGAAAGAAAGATGCGGTA 59.767 45.455 0.00 0.00 0.00 4.02
1986 5868 1.404851 GCTCTGAGGCACCTAGTTGAC 60.405 57.143 6.83 0.00 0.00 3.18
2209 6091 2.224597 TGCAGCATGGTTCTTCAAGAGA 60.225 45.455 0.00 0.00 35.86 3.10
2250 6132 1.491670 CACTGTCACAGTCAGGAACG 58.508 55.000 7.74 0.00 43.43 3.95
2286 6176 6.494059 AGAAAAGGTTTGCCACTTCCTATAT 58.506 36.000 0.00 0.00 37.19 0.86
2293 6183 6.826741 GGTTTGCCACTTCCTATATCAAACTA 59.173 38.462 12.61 0.00 40.63 2.24
2381 6281 1.893137 TCTTCTCAGCTACTTCCGCAA 59.107 47.619 0.00 0.00 0.00 4.85
2426 6326 5.685520 AGGAGATGATGATGATGATCCTG 57.314 43.478 0.00 0.00 34.68 3.86
2427 6327 5.095097 AGGAGATGATGATGATGATCCTGT 58.905 41.667 0.00 0.00 34.68 4.00
2439 6339 8.475639 TGATGATGATCCTGTGATATACATCAG 58.524 37.037 0.00 0.00 41.87 2.90
2440 6340 6.637657 TGATGATCCTGTGATATACATCAGC 58.362 40.000 0.00 0.00 41.87 4.26
2441 6341 6.439692 TGATGATCCTGTGATATACATCAGCT 59.560 38.462 0.00 0.00 41.87 4.24
2442 6342 7.616935 TGATGATCCTGTGATATACATCAGCTA 59.383 37.037 0.00 0.00 41.87 3.32
2443 6343 7.968014 TGATCCTGTGATATACATCAGCTAT 57.032 36.000 0.00 0.00 41.87 2.97
2444 6344 9.652114 ATGATCCTGTGATATACATCAGCTATA 57.348 33.333 0.00 0.00 41.87 1.31
2445 6345 9.129532 TGATCCTGTGATATACATCAGCTATAG 57.870 37.037 0.00 0.00 41.87 1.31
2446 6346 9.348476 GATCCTGTGATATACATCAGCTATAGA 57.652 37.037 3.21 0.00 41.87 1.98
2447 6347 8.512966 TCCTGTGATATACATCAGCTATAGAC 57.487 38.462 3.21 0.00 41.87 2.59
2448 6348 8.109634 TCCTGTGATATACATCAGCTATAGACA 58.890 37.037 3.21 0.00 41.87 3.41
2449 6349 8.911965 CCTGTGATATACATCAGCTATAGACAT 58.088 37.037 3.21 0.00 41.87 3.06
2450 6350 9.733219 CTGTGATATACATCAGCTATAGACATG 57.267 37.037 3.21 4.38 41.87 3.21
2451 6351 8.689972 TGTGATATACATCAGCTATAGACATGG 58.310 37.037 3.21 0.00 41.87 3.66
2452 6352 8.140628 GTGATATACATCAGCTATAGACATGGG 58.859 40.741 3.21 0.00 41.87 4.00
2453 6353 8.061304 TGATATACATCAGCTATAGACATGGGA 58.939 37.037 3.21 0.00 36.22 4.37
2454 6354 8.844865 ATATACATCAGCTATAGACATGGGAA 57.155 34.615 3.21 0.00 0.00 3.97
2455 6355 5.220710 ACATCAGCTATAGACATGGGAAC 57.779 43.478 3.21 0.00 0.00 3.62
2456 6356 4.904251 ACATCAGCTATAGACATGGGAACT 59.096 41.667 3.21 0.00 0.00 3.01
2457 6357 5.367937 ACATCAGCTATAGACATGGGAACTT 59.632 40.000 3.21 0.00 0.00 2.66
2458 6358 5.537300 TCAGCTATAGACATGGGAACTTC 57.463 43.478 3.21 0.00 0.00 3.01
2483 6383 3.356290 AGTGTACATCAAGCATTTCCCC 58.644 45.455 0.00 0.00 0.00 4.81
2489 6389 1.762708 TCAAGCATTTCCCCGGATTC 58.237 50.000 0.73 0.00 0.00 2.52
2498 6398 0.764369 TCCCCGGATTCCTCAGATGG 60.764 60.000 0.73 0.00 0.00 3.51
2518 6418 4.527944 TGGTGGTTATTGTTGTTGACTGA 58.472 39.130 0.00 0.00 0.00 3.41
2521 6421 4.271533 GTGGTTATTGTTGTTGACTGACGA 59.728 41.667 0.00 0.00 0.00 4.20
2523 6423 6.146510 GTGGTTATTGTTGTTGACTGACGATA 59.853 38.462 0.00 0.00 0.00 2.92
2531 6431 5.638596 TGTTGACTGACGATATGTACTGT 57.361 39.130 0.00 0.00 0.00 3.55
2538 6438 8.565416 TGACTGACGATATGTACTGTTTATAGG 58.435 37.037 0.00 0.00 0.00 2.57
2539 6439 8.687292 ACTGACGATATGTACTGTTTATAGGA 57.313 34.615 0.00 0.00 0.00 2.94
2541 6441 9.961265 CTGACGATATGTACTGTTTATAGGAAA 57.039 33.333 0.00 0.00 0.00 3.13
2565 6466 3.562343 AGATTGTGCTCAGCATCTCAT 57.438 42.857 0.54 0.00 41.91 2.90
2586 6487 3.897239 TGCTAATGGTGGATTAGTTGGG 58.103 45.455 0.00 0.00 43.94 4.12
2587 6488 3.525609 TGCTAATGGTGGATTAGTTGGGA 59.474 43.478 0.00 0.00 43.94 4.37
2616 6517 0.448593 CCGGTCGTTGTTGTTGTTGT 59.551 50.000 0.00 0.00 0.00 3.32
2617 6518 1.135632 CCGGTCGTTGTTGTTGTTGTT 60.136 47.619 0.00 0.00 0.00 2.83
2618 6519 1.908247 CGGTCGTTGTTGTTGTTGTTG 59.092 47.619 0.00 0.00 0.00 3.33
2635 6536 6.511416 TGTTGTTGAGATGGTGTATTTTTGG 58.489 36.000 0.00 0.00 0.00 3.28
2642 6543 6.782988 TGAGATGGTGTATTTTTGGGGTTTAA 59.217 34.615 0.00 0.00 0.00 1.52
2674 6578 5.812642 AGCTTGTCTATTGGTATCTGTTTCG 59.187 40.000 0.00 0.00 0.00 3.46
2688 6592 6.801539 ATCTGTTTCGCTGAGATTTTGTTA 57.198 33.333 0.00 0.00 0.00 2.41
2697 6601 5.022021 GCTGAGATTTTGTTACGTACATGC 58.978 41.667 0.00 0.00 36.44 4.06
2712 6616 5.923114 ACGTACATGCTATTAGCTGATTCAG 59.077 40.000 16.29 9.40 42.97 3.02
2715 6619 6.172136 ACATGCTATTAGCTGATTCAGACT 57.828 37.500 17.87 14.93 42.97 3.24
2716 6620 6.222389 ACATGCTATTAGCTGATTCAGACTC 58.778 40.000 17.87 0.00 42.97 3.36
2725 6629 9.709495 ATTAGCTGATTCAGACTCTGATTTATC 57.291 33.333 17.87 10.16 40.39 1.75
2763 6667 5.496556 TCTTCTCTGTCTAGACTTGAGAGG 58.503 45.833 29.90 29.90 40.06 3.69
2819 6725 6.376299 CGTAGGTTAGGGCATCATATGTACTA 59.624 42.308 1.90 0.00 0.00 1.82
2822 6728 6.557253 AGGTTAGGGCATCATATGTACTAACA 59.443 38.462 22.42 2.05 44.22 2.41
2827 6733 6.327626 AGGGCATCATATGTACTAACACTCTT 59.672 38.462 1.90 0.00 38.78 2.85
2855 7272 9.495754 GATTGAATTGAAATCAGTAGTTAGTGC 57.504 33.333 5.84 0.00 34.73 4.40
2882 7299 4.142534 GCGTTAACCCTTTTATTCCAGGTC 60.143 45.833 0.00 0.00 0.00 3.85
2894 7311 3.924114 TTCCAGGTCTCAGACAACAAA 57.076 42.857 7.24 0.00 33.68 2.83
3018 7658 4.337555 GCTCATTGCAAATCCATCTAGTGT 59.662 41.667 1.71 0.00 42.31 3.55
3154 7800 5.344743 TTGCAAATGAAGTTGGTTTGGTA 57.655 34.783 0.00 0.00 34.34 3.25
3157 7803 4.690280 GCAAATGAAGTTGGTTTGGTATGG 59.310 41.667 10.09 0.00 34.34 2.74
3161 7807 5.269505 TGAAGTTGGTTTGGTATGGTTTG 57.730 39.130 0.00 0.00 0.00 2.93
3162 7808 4.100189 TGAAGTTGGTTTGGTATGGTTTGG 59.900 41.667 0.00 0.00 0.00 3.28
3163 7809 3.648739 AGTTGGTTTGGTATGGTTTGGT 58.351 40.909 0.00 0.00 0.00 3.67
3164 7810 4.805744 AGTTGGTTTGGTATGGTTTGGTA 58.194 39.130 0.00 0.00 0.00 3.25
3165 7811 5.399113 AGTTGGTTTGGTATGGTTTGGTAT 58.601 37.500 0.00 0.00 0.00 2.73
3166 7812 5.245075 AGTTGGTTTGGTATGGTTTGGTATG 59.755 40.000 0.00 0.00 0.00 2.39
3167 7813 4.090090 TGGTTTGGTATGGTTTGGTATGG 58.910 43.478 0.00 0.00 0.00 2.74
3168 7814 4.090819 GGTTTGGTATGGTTTGGTATGGT 58.909 43.478 0.00 0.00 0.00 3.55
3169 7815 4.528987 GGTTTGGTATGGTTTGGTATGGTT 59.471 41.667 0.00 0.00 0.00 3.67
3170 7816 5.012251 GGTTTGGTATGGTTTGGTATGGTTT 59.988 40.000 0.00 0.00 0.00 3.27
3171 7817 5.730296 TTGGTATGGTTTGGTATGGTTTG 57.270 39.130 0.00 0.00 0.00 2.93
3172 7818 4.999310 TGGTATGGTTTGGTATGGTTTGA 58.001 39.130 0.00 0.00 0.00 2.69
3173 7819 5.584913 TGGTATGGTTTGGTATGGTTTGAT 58.415 37.500 0.00 0.00 0.00 2.57
3174 7820 6.019748 TGGTATGGTTTGGTATGGTTTGATT 58.980 36.000 0.00 0.00 0.00 2.57
3175 7821 7.182760 TGGTATGGTTTGGTATGGTTTGATTA 58.817 34.615 0.00 0.00 0.00 1.75
3176 7822 7.122948 TGGTATGGTTTGGTATGGTTTGATTAC 59.877 37.037 0.00 0.00 0.00 1.89
3177 7823 7.122948 GGTATGGTTTGGTATGGTTTGATTACA 59.877 37.037 0.00 0.00 0.00 2.41
3178 7824 6.582677 TGGTTTGGTATGGTTTGATTACAG 57.417 37.500 0.00 0.00 0.00 2.74
3179 7825 5.478679 TGGTTTGGTATGGTTTGATTACAGG 59.521 40.000 0.00 0.00 0.00 4.00
3180 7826 5.479027 GGTTTGGTATGGTTTGATTACAGGT 59.521 40.000 0.00 0.00 0.00 4.00
3181 7827 6.386654 GTTTGGTATGGTTTGATTACAGGTG 58.613 40.000 0.00 0.00 0.00 4.00
3182 7828 4.013728 TGGTATGGTTTGATTACAGGTGC 58.986 43.478 0.00 0.00 0.00 5.01
3183 7829 4.263727 TGGTATGGTTTGATTACAGGTGCT 60.264 41.667 0.00 0.00 0.00 4.40
3184 7830 4.096382 GGTATGGTTTGATTACAGGTGCTG 59.904 45.833 0.00 0.00 37.52 4.41
3186 7832 2.884012 TGGTTTGATTACAGGTGCTGTG 59.116 45.455 0.00 0.00 45.01 3.66
3187 7833 2.351738 GGTTTGATTACAGGTGCTGTGC 60.352 50.000 0.00 0.00 45.01 4.57
3188 7834 2.554032 GTTTGATTACAGGTGCTGTGCT 59.446 45.455 0.00 0.00 45.01 4.40
3189 7835 1.812235 TGATTACAGGTGCTGTGCTG 58.188 50.000 0.00 0.00 45.01 4.41
3190 7836 1.089920 GATTACAGGTGCTGTGCTGG 58.910 55.000 0.00 0.00 45.01 4.85
3191 7837 0.962356 ATTACAGGTGCTGTGCTGGC 60.962 55.000 0.00 0.00 45.01 4.85
3192 7838 2.055689 TTACAGGTGCTGTGCTGGCT 62.056 55.000 0.00 0.00 45.01 4.75
3193 7839 2.736579 TACAGGTGCTGTGCTGGCTG 62.737 60.000 0.00 0.00 45.01 4.85
3194 7840 4.655647 AGGTGCTGTGCTGGCTGG 62.656 66.667 0.00 0.00 0.00 4.85
3212 7858 4.225497 GGCTCACGCTTGCCTATT 57.775 55.556 5.99 0.00 45.26 1.73
3213 7859 2.482326 GGCTCACGCTTGCCTATTT 58.518 52.632 5.99 0.00 45.26 1.40
3214 7860 0.099436 GGCTCACGCTTGCCTATTTG 59.901 55.000 5.99 0.00 45.26 2.32
3215 7861 0.804989 GCTCACGCTTGCCTATTTGT 59.195 50.000 0.00 0.00 0.00 2.83
3216 7862 1.200020 GCTCACGCTTGCCTATTTGTT 59.800 47.619 0.00 0.00 0.00 2.83
3217 7863 2.729156 GCTCACGCTTGCCTATTTGTTC 60.729 50.000 0.00 0.00 0.00 3.18
3218 7864 1.810151 TCACGCTTGCCTATTTGTTCC 59.190 47.619 0.00 0.00 0.00 3.62
3219 7865 1.135402 CACGCTTGCCTATTTGTTCCC 60.135 52.381 0.00 0.00 0.00 3.97
3220 7866 0.455815 CGCTTGCCTATTTGTTCCCC 59.544 55.000 0.00 0.00 0.00 4.81
3221 7867 1.852633 GCTTGCCTATTTGTTCCCCT 58.147 50.000 0.00 0.00 0.00 4.79
3222 7868 2.179427 GCTTGCCTATTTGTTCCCCTT 58.821 47.619 0.00 0.00 0.00 3.95
3223 7869 2.166459 GCTTGCCTATTTGTTCCCCTTC 59.834 50.000 0.00 0.00 0.00 3.46
3224 7870 3.430453 CTTGCCTATTTGTTCCCCTTCA 58.570 45.455 0.00 0.00 0.00 3.02
3225 7871 2.802719 TGCCTATTTGTTCCCCTTCAC 58.197 47.619 0.00 0.00 0.00 3.18
3226 7872 2.378547 TGCCTATTTGTTCCCCTTCACT 59.621 45.455 0.00 0.00 0.00 3.41
3227 7873 3.017442 GCCTATTTGTTCCCCTTCACTC 58.983 50.000 0.00 0.00 0.00 3.51
3228 7874 3.621558 CCTATTTGTTCCCCTTCACTCC 58.378 50.000 0.00 0.00 0.00 3.85
3229 7875 3.267031 CCTATTTGTTCCCCTTCACTCCT 59.733 47.826 0.00 0.00 0.00 3.69
3230 7876 3.903530 ATTTGTTCCCCTTCACTCCTT 57.096 42.857 0.00 0.00 0.00 3.36
3231 7877 2.951229 TTGTTCCCCTTCACTCCTTC 57.049 50.000 0.00 0.00 0.00 3.46
3232 7878 1.814429 TGTTCCCCTTCACTCCTTCA 58.186 50.000 0.00 0.00 0.00 3.02
3233 7879 1.699634 TGTTCCCCTTCACTCCTTCAG 59.300 52.381 0.00 0.00 0.00 3.02
3234 7880 1.003696 GTTCCCCTTCACTCCTTCAGG 59.996 57.143 0.00 0.00 0.00 3.86
3235 7881 1.201429 TCCCCTTCACTCCTTCAGGC 61.201 60.000 0.00 0.00 34.44 4.85
3236 7882 1.492133 CCCCTTCACTCCTTCAGGCA 61.492 60.000 0.00 0.00 34.44 4.75
3237 7883 0.622665 CCCTTCACTCCTTCAGGCAT 59.377 55.000 0.00 0.00 34.44 4.40
3238 7884 1.839994 CCCTTCACTCCTTCAGGCATA 59.160 52.381 0.00 0.00 34.44 3.14
3239 7885 2.420687 CCCTTCACTCCTTCAGGCATAC 60.421 54.545 0.00 0.00 34.44 2.39
3240 7886 2.237143 CCTTCACTCCTTCAGGCATACA 59.763 50.000 0.00 0.00 34.44 2.29
3241 7887 3.307691 CCTTCACTCCTTCAGGCATACAA 60.308 47.826 0.00 0.00 34.44 2.41
3242 7888 3.334583 TCACTCCTTCAGGCATACAAC 57.665 47.619 0.00 0.00 34.44 3.32
3243 7889 2.637382 TCACTCCTTCAGGCATACAACA 59.363 45.455 0.00 0.00 34.44 3.33
3244 7890 3.005554 CACTCCTTCAGGCATACAACAG 58.994 50.000 0.00 0.00 34.44 3.16
3245 7891 2.012673 CTCCTTCAGGCATACAACAGC 58.987 52.381 0.00 0.00 34.44 4.40
3246 7892 1.630369 TCCTTCAGGCATACAACAGCT 59.370 47.619 0.00 0.00 34.44 4.24
3247 7893 1.741706 CCTTCAGGCATACAACAGCTG 59.258 52.381 13.48 13.48 0.00 4.24
3248 7894 2.616256 CCTTCAGGCATACAACAGCTGA 60.616 50.000 23.35 0.00 0.00 4.26
3249 7895 2.857186 TCAGGCATACAACAGCTGAA 57.143 45.000 23.35 2.81 0.00 3.02
3250 7896 2.703416 TCAGGCATACAACAGCTGAAG 58.297 47.619 23.35 14.52 0.00 3.02
3251 7897 1.131883 CAGGCATACAACAGCTGAAGC 59.868 52.381 23.35 13.57 42.49 3.86
3252 7898 0.453390 GGCATACAACAGCTGAAGCC 59.547 55.000 23.35 18.37 43.38 4.35
3253 7899 1.167851 GCATACAACAGCTGAAGCCA 58.832 50.000 23.35 4.25 43.38 4.75
3254 7900 1.541147 GCATACAACAGCTGAAGCCAA 59.459 47.619 23.35 0.45 43.38 4.52
3255 7901 2.030007 GCATACAACAGCTGAAGCCAAA 60.030 45.455 23.35 0.00 43.38 3.28
3256 7902 3.552684 GCATACAACAGCTGAAGCCAAAA 60.553 43.478 23.35 0.00 43.38 2.44
3257 7903 4.619973 CATACAACAGCTGAAGCCAAAAA 58.380 39.130 23.35 0.00 43.38 1.94
3258 7904 2.892374 ACAACAGCTGAAGCCAAAAAC 58.108 42.857 23.35 0.00 43.38 2.43
3259 7905 2.233431 ACAACAGCTGAAGCCAAAAACA 59.767 40.909 23.35 0.00 43.38 2.83
3260 7906 2.584492 ACAGCTGAAGCCAAAAACAC 57.416 45.000 23.35 0.00 43.38 3.32
3261 7907 1.136891 ACAGCTGAAGCCAAAAACACC 59.863 47.619 23.35 0.00 43.38 4.16
3262 7908 0.752658 AGCTGAAGCCAAAAACACCC 59.247 50.000 0.00 0.00 43.38 4.61
3263 7909 0.463620 GCTGAAGCCAAAAACACCCA 59.536 50.000 0.00 0.00 34.31 4.51
3264 7910 1.134551 GCTGAAGCCAAAAACACCCAA 60.135 47.619 0.00 0.00 34.31 4.12
3265 7911 2.825205 CTGAAGCCAAAAACACCCAAG 58.175 47.619 0.00 0.00 0.00 3.61
3266 7912 1.484240 TGAAGCCAAAAACACCCAAGG 59.516 47.619 0.00 0.00 0.00 3.61
3267 7913 1.484653 GAAGCCAAAAACACCCAAGGT 59.515 47.619 0.00 0.00 35.62 3.50
3268 7914 1.119684 AGCCAAAAACACCCAAGGTC 58.880 50.000 0.00 0.00 31.02 3.85
3269 7915 0.105964 GCCAAAAACACCCAAGGTCC 59.894 55.000 0.00 0.00 31.02 4.46
3270 7916 0.756294 CCAAAAACACCCAAGGTCCC 59.244 55.000 0.00 0.00 31.02 4.46
3271 7917 1.691163 CCAAAAACACCCAAGGTCCCT 60.691 52.381 0.00 0.00 31.02 4.20
3272 7918 1.686587 CAAAAACACCCAAGGTCCCTC 59.313 52.381 0.00 0.00 31.02 4.30
3273 7919 0.930726 AAAACACCCAAGGTCCCTCA 59.069 50.000 0.00 0.00 31.02 3.86
3274 7920 0.478507 AAACACCCAAGGTCCCTCAG 59.521 55.000 0.00 0.00 31.02 3.35
3275 7921 0.401395 AACACCCAAGGTCCCTCAGA 60.401 55.000 0.00 0.00 31.02 3.27
3276 7922 0.401395 ACACCCAAGGTCCCTCAGAA 60.401 55.000 0.00 0.00 31.02 3.02
3277 7923 0.326264 CACCCAAGGTCCCTCAGAAG 59.674 60.000 0.00 0.00 31.02 2.85
3278 7924 0.193574 ACCCAAGGTCCCTCAGAAGA 59.806 55.000 0.00 0.00 0.00 2.87
3279 7925 1.203492 ACCCAAGGTCCCTCAGAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
3280 7926 1.488393 CCCAAGGTCCCTCAGAAGATC 59.512 57.143 0.00 0.00 0.00 2.75
3281 7927 2.476199 CCAAGGTCCCTCAGAAGATCT 58.524 52.381 0.00 0.00 0.00 2.75
3282 7928 2.433970 CCAAGGTCCCTCAGAAGATCTC 59.566 54.545 0.00 0.00 0.00 2.75
3283 7929 3.102972 CAAGGTCCCTCAGAAGATCTCA 58.897 50.000 0.00 0.00 0.00 3.27
3284 7930 3.481559 AGGTCCCTCAGAAGATCTCAA 57.518 47.619 0.00 0.00 0.00 3.02
3285 7931 4.006247 AGGTCCCTCAGAAGATCTCAAT 57.994 45.455 0.00 0.00 0.00 2.57
3286 7932 3.966665 AGGTCCCTCAGAAGATCTCAATC 59.033 47.826 0.00 0.00 0.00 2.67
3287 7933 3.966665 GGTCCCTCAGAAGATCTCAATCT 59.033 47.826 0.00 0.00 44.37 2.40
3288 7934 4.202243 GGTCCCTCAGAAGATCTCAATCTG 60.202 50.000 14.36 14.36 41.54 2.90
3289 7935 3.387374 TCCCTCAGAAGATCTCAATCTGC 59.613 47.826 15.35 0.00 41.54 4.26
3290 7936 3.134262 CCCTCAGAAGATCTCAATCTGCA 59.866 47.826 15.35 6.50 41.54 4.41
3291 7937 4.121317 CCTCAGAAGATCTCAATCTGCAC 58.879 47.826 15.35 0.00 41.54 4.57
3292 7938 3.778618 TCAGAAGATCTCAATCTGCACG 58.221 45.455 15.35 0.00 41.54 5.34
3293 7939 2.284684 CAGAAGATCTCAATCTGCACGC 59.715 50.000 9.42 0.00 41.54 5.34
3294 7940 1.596727 GAAGATCTCAATCTGCACGCC 59.403 52.381 0.00 0.00 41.54 5.68
3295 7941 0.529337 AGATCTCAATCTGCACGCCG 60.529 55.000 0.00 0.00 40.84 6.46
3296 7942 1.493950 GATCTCAATCTGCACGCCGG 61.494 60.000 0.00 0.00 0.00 6.13
3297 7943 2.930385 ATCTCAATCTGCACGCCGGG 62.930 60.000 2.18 0.00 0.00 5.73
3298 7944 3.664025 CTCAATCTGCACGCCGGGA 62.664 63.158 2.18 0.00 0.00 5.14
3299 7945 2.514592 CAATCTGCACGCCGGGAT 60.515 61.111 2.18 0.00 0.00 3.85
3300 7946 1.227527 CAATCTGCACGCCGGGATA 60.228 57.895 2.18 0.00 0.00 2.59
3301 7947 1.069765 AATCTGCACGCCGGGATAG 59.930 57.895 2.18 0.00 0.00 2.08
3302 7948 1.686325 AATCTGCACGCCGGGATAGT 61.686 55.000 2.18 0.00 0.00 2.12
3303 7949 2.088674 ATCTGCACGCCGGGATAGTC 62.089 60.000 2.18 0.00 0.00 2.59
3304 7950 2.758327 TGCACGCCGGGATAGTCT 60.758 61.111 2.18 0.00 0.00 3.24
3305 7951 2.298158 CTGCACGCCGGGATAGTCTT 62.298 60.000 2.18 0.00 0.00 3.01
3306 7952 1.591863 GCACGCCGGGATAGTCTTC 60.592 63.158 2.18 0.00 0.00 2.87
3307 7953 1.813859 CACGCCGGGATAGTCTTCA 59.186 57.895 2.18 0.00 0.00 3.02
3308 7954 0.249073 CACGCCGGGATAGTCTTCAG 60.249 60.000 2.18 0.00 0.00 3.02
3309 7955 1.364171 CGCCGGGATAGTCTTCAGG 59.636 63.158 2.18 0.00 0.00 3.86
3310 7956 1.107538 CGCCGGGATAGTCTTCAGGA 61.108 60.000 2.18 0.00 0.00 3.86
3311 7957 0.676736 GCCGGGATAGTCTTCAGGAG 59.323 60.000 2.18 0.00 0.00 3.69
3312 7958 1.754555 GCCGGGATAGTCTTCAGGAGA 60.755 57.143 2.18 0.00 0.00 3.71
3313 7959 2.667470 CCGGGATAGTCTTCAGGAGAA 58.333 52.381 0.00 0.00 35.79 2.87
3314 7960 3.031736 CCGGGATAGTCTTCAGGAGAAA 58.968 50.000 0.00 0.00 35.79 2.52
3315 7961 3.451178 CCGGGATAGTCTTCAGGAGAAAA 59.549 47.826 0.00 0.00 35.79 2.29
3316 7962 4.081087 CCGGGATAGTCTTCAGGAGAAAAA 60.081 45.833 0.00 0.00 35.79 1.94
3333 7979 0.250424 AAAAAGGCCAAGGCACATGC 60.250 50.000 13.87 0.00 44.11 4.06
3345 7991 0.817654 GCACATGCCCTACCTTTTCC 59.182 55.000 0.00 0.00 34.31 3.13
3346 7992 1.616994 GCACATGCCCTACCTTTTCCT 60.617 52.381 0.00 0.00 34.31 3.36
3347 7993 2.356741 GCACATGCCCTACCTTTTCCTA 60.357 50.000 0.00 0.00 34.31 2.94
3348 7994 3.688414 GCACATGCCCTACCTTTTCCTAT 60.688 47.826 0.00 0.00 34.31 2.57
3349 7995 4.445735 GCACATGCCCTACCTTTTCCTATA 60.446 45.833 0.00 0.00 34.31 1.31
3350 7996 5.749032 GCACATGCCCTACCTTTTCCTATAT 60.749 44.000 0.00 0.00 34.31 0.86
3351 7997 6.306987 CACATGCCCTACCTTTTCCTATATT 58.693 40.000 0.00 0.00 0.00 1.28
3352 7998 7.458397 CACATGCCCTACCTTTTCCTATATTA 58.542 38.462 0.00 0.00 0.00 0.98
3353 7999 8.109634 CACATGCCCTACCTTTTCCTATATTAT 58.890 37.037 0.00 0.00 0.00 1.28
3354 8000 8.109634 ACATGCCCTACCTTTTCCTATATTATG 58.890 37.037 0.00 0.00 0.00 1.90
3355 8001 6.481643 TGCCCTACCTTTTCCTATATTATGC 58.518 40.000 0.00 0.00 0.00 3.14
3356 8002 6.274672 TGCCCTACCTTTTCCTATATTATGCT 59.725 38.462 0.00 0.00 0.00 3.79
3357 8003 6.824196 GCCCTACCTTTTCCTATATTATGCTC 59.176 42.308 0.00 0.00 0.00 4.26
3358 8004 7.528881 GCCCTACCTTTTCCTATATTATGCTCA 60.529 40.741 0.00 0.00 0.00 4.26
3359 8005 8.383175 CCCTACCTTTTCCTATATTATGCTCAA 58.617 37.037 0.00 0.00 0.00 3.02
3360 8006 9.793259 CCTACCTTTTCCTATATTATGCTCAAA 57.207 33.333 0.00 0.00 0.00 2.69
3362 8008 8.465273 ACCTTTTCCTATATTATGCTCAAACC 57.535 34.615 0.00 0.00 0.00 3.27
3363 8009 7.505923 ACCTTTTCCTATATTATGCTCAAACCC 59.494 37.037 0.00 0.00 0.00 4.11
3364 8010 7.039714 CCTTTTCCTATATTATGCTCAAACCCC 60.040 40.741 0.00 0.00 0.00 4.95
3365 8011 5.160607 TCCTATATTATGCTCAAACCCCG 57.839 43.478 0.00 0.00 0.00 5.73
3366 8012 3.689649 CCTATATTATGCTCAAACCCCGC 59.310 47.826 0.00 0.00 0.00 6.13
3367 8013 1.975660 TATTATGCTCAAACCCCGCC 58.024 50.000 0.00 0.00 0.00 6.13
3368 8014 0.755327 ATTATGCTCAAACCCCGCCC 60.755 55.000 0.00 0.00 0.00 6.13
3369 8015 2.143575 TTATGCTCAAACCCCGCCCA 62.144 55.000 0.00 0.00 0.00 5.36
3370 8016 2.550699 TATGCTCAAACCCCGCCCAG 62.551 60.000 0.00 0.00 0.00 4.45
3371 8017 4.660938 GCTCAAACCCCGCCCAGT 62.661 66.667 0.00 0.00 0.00 4.00
3372 8018 2.672996 CTCAAACCCCGCCCAGTG 60.673 66.667 0.00 0.00 0.00 3.66
3373 8019 3.491598 CTCAAACCCCGCCCAGTGT 62.492 63.158 0.00 0.00 0.00 3.55
3374 8020 2.983592 CAAACCCCGCCCAGTGTC 60.984 66.667 0.00 0.00 0.00 3.67
3375 8021 4.280019 AAACCCCGCCCAGTGTCC 62.280 66.667 0.00 0.00 0.00 4.02
3378 8024 4.278513 CCCCGCCCAGTGTCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
3379 8025 2.672996 CCCGCCCAGTGTCCAAAG 60.673 66.667 0.00 0.00 0.00 2.77
3380 8026 2.429930 CCGCCCAGTGTCCAAAGA 59.570 61.111 0.00 0.00 0.00 2.52
3381 8027 1.966451 CCGCCCAGTGTCCAAAGAC 60.966 63.158 0.00 0.00 43.83 3.01
3393 8039 4.458951 GTCCAAAGACACGATCATATGC 57.541 45.455 0.00 0.00 42.99 3.14
3394 8040 3.248602 GTCCAAAGACACGATCATATGCC 59.751 47.826 0.00 0.00 42.99 4.40
3395 8041 2.221749 CCAAAGACACGATCATATGCCG 59.778 50.000 13.36 13.36 0.00 5.69
3396 8042 2.866156 CAAAGACACGATCATATGCCGT 59.134 45.455 14.41 14.41 36.95 5.68
3397 8043 2.423926 AGACACGATCATATGCCGTC 57.576 50.000 16.44 9.64 33.96 4.79
3398 8044 1.681264 AGACACGATCATATGCCGTCA 59.319 47.619 16.44 0.00 33.96 4.35
3399 8045 1.787155 GACACGATCATATGCCGTCAC 59.213 52.381 16.44 11.30 33.96 3.67
3400 8046 1.139989 CACGATCATATGCCGTCACC 58.860 55.000 16.44 0.00 33.96 4.02
3401 8047 0.033504 ACGATCATATGCCGTCACCC 59.966 55.000 14.41 0.00 29.82 4.61
3402 8048 0.318441 CGATCATATGCCGTCACCCT 59.682 55.000 0.00 0.00 0.00 4.34
3403 8049 1.670087 CGATCATATGCCGTCACCCTC 60.670 57.143 0.00 0.00 0.00 4.30
3404 8050 0.318441 ATCATATGCCGTCACCCTCG 59.682 55.000 0.00 0.00 0.00 4.63
3410 8056 4.007457 CCGTCACCCTCGGTTCTA 57.993 61.111 0.00 0.00 42.62 2.10
3411 8057 2.501492 CCGTCACCCTCGGTTCTAT 58.499 57.895 0.00 0.00 42.62 1.98
3412 8058 0.102481 CCGTCACCCTCGGTTCTATG 59.898 60.000 0.00 0.00 42.62 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
167 203 6.015940 ACATCAAGAATCCTGAACTTTCAACC 60.016 38.462 0.00 0.00 36.64 3.77
168 204 6.974965 ACATCAAGAATCCTGAACTTTCAAC 58.025 36.000 0.00 0.00 36.64 3.18
207 244 4.440525 CGATCATGGCCAAAAATTGCTACT 60.441 41.667 10.96 0.00 0.00 2.57
208 245 3.798337 CGATCATGGCCAAAAATTGCTAC 59.202 43.478 10.96 0.00 0.00 3.58
219 256 1.470805 CGACTGTAACGATCATGGCCA 60.471 52.381 8.56 8.56 0.00 5.36
245 282 5.534207 TTTATATCACGGTGAATACGGGT 57.466 39.130 15.72 0.00 35.91 5.28
250 295 7.551262 ACAGCAGTTTTTATATCACGGTGAATA 59.449 33.333 15.72 11.00 0.00 1.75
289 335 3.054728 TGAAAGGATCCTATTTCACGGCA 60.055 43.478 20.45 3.36 39.76 5.69
318 364 1.210931 CCCAGCATTGCAGACGTTG 59.789 57.895 11.91 0.00 0.00 4.10
390 436 0.895100 GGGAACATGAGCTGGTTGCA 60.895 55.000 0.00 0.00 45.94 4.08
685 4540 5.104527 AGCTTGCATGGTGTAGTTAGGAATA 60.105 40.000 3.17 0.00 0.00 1.75
1109 4990 0.986527 TGCTTGAGATGCTTCCTCCA 59.013 50.000 0.00 0.00 0.00 3.86
1121 5002 5.180680 TCACTGTCAAAATGAGATGCTTGAG 59.819 40.000 0.00 0.00 0.00 3.02
1181 5062 5.950023 TCTGACCGGTATTAGGAAGACTAT 58.050 41.667 7.34 0.00 0.00 2.12
1204 5085 5.044919 TGTCAATGTCAACCTCCCTATCAAT 60.045 40.000 0.00 0.00 0.00 2.57
1216 5097 6.688385 CGTATCATTCCATTGTCAATGTCAAC 59.312 38.462 21.32 10.10 37.18 3.18
1217 5098 6.183360 CCGTATCATTCCATTGTCAATGTCAA 60.183 38.462 21.32 14.67 37.18 3.18
1233 5114 5.011738 CCTATCACTTGGTACCCGTATCATT 59.988 44.000 10.07 0.00 0.00 2.57
1437 5318 1.077068 GAAATCACCCCGGGCATCA 60.077 57.895 17.73 0.00 0.00 3.07
1481 5362 4.625028 GCTTCCCAAATCATTGATTAGCC 58.375 43.478 12.15 0.29 38.94 3.93
1632 5514 4.201744 GCATTTTCTTGGATTTTGGCATCG 60.202 41.667 0.00 0.00 0.00 3.84
1683 5565 8.314021 ACGATGGCAATCTTATTGATATCACTA 58.686 33.333 4.48 1.33 34.45 2.74
1755 5637 5.163195 TGAGTTCTCTTTAGCTTCAGGGTTT 60.163 40.000 0.00 0.00 0.00 3.27
1824 5706 0.179073 CGCCAGATCGTCCAATCCTT 60.179 55.000 0.00 0.00 0.00 3.36
1860 5742 0.776810 TCCCATTTCCCAGCAAGTCA 59.223 50.000 0.00 0.00 0.00 3.41
1880 5762 2.876079 GCATCTTTCTTTCCTCGTGGGT 60.876 50.000 3.23 0.00 36.25 4.51
1905 5787 8.367156 AGTATGGACAAATTAAACAATGCAGTT 58.633 29.630 0.00 0.00 0.00 3.16
1986 5868 0.465097 CAGCAGCAGGGTCCATAAGG 60.465 60.000 0.00 0.00 0.00 2.69
2196 6078 1.270358 ACGGCACTCTCTTGAAGAACC 60.270 52.381 0.00 0.00 32.23 3.62
2209 6091 3.253838 TAAAGGGGGCACGGCACT 61.254 61.111 0.00 0.00 29.71 4.40
2250 6132 4.383602 TTTTCTCTTGCGCGCGGC 62.384 61.111 33.06 23.43 43.96 6.53
2324 6218 7.285788 CAACAAATTCAAATGCTTAGCAAGAC 58.714 34.615 12.08 0.00 43.62 3.01
2381 6281 1.271379 CCGAGTTCCCATGTCTTTGGT 60.271 52.381 0.00 0.00 34.77 3.67
2426 6326 8.140628 CCCATGTCTATAGCTGATGTATATCAC 58.859 40.741 0.00 0.00 38.37 3.06
2427 6327 8.061304 TCCCATGTCTATAGCTGATGTATATCA 58.939 37.037 0.00 1.91 40.92 2.15
2442 6342 9.080097 GTACACTATAGAAGTTCCCATGTCTAT 57.920 37.037 6.78 6.53 35.76 1.98
2443 6343 8.057011 TGTACACTATAGAAGTTCCCATGTCTA 58.943 37.037 6.78 0.00 35.76 2.59
2444 6344 6.895756 TGTACACTATAGAAGTTCCCATGTCT 59.104 38.462 6.78 0.00 35.76 3.41
2445 6345 7.108841 TGTACACTATAGAAGTTCCCATGTC 57.891 40.000 6.78 0.00 35.76 3.06
2446 6346 7.344612 TGATGTACACTATAGAAGTTCCCATGT 59.655 37.037 6.78 0.00 35.76 3.21
2447 6347 7.726216 TGATGTACACTATAGAAGTTCCCATG 58.274 38.462 6.78 0.00 35.76 3.66
2448 6348 7.914427 TGATGTACACTATAGAAGTTCCCAT 57.086 36.000 6.78 7.69 35.76 4.00
2449 6349 7.632898 GCTTGATGTACACTATAGAAGTTCCCA 60.633 40.741 6.78 3.72 35.76 4.37
2450 6350 6.702282 GCTTGATGTACACTATAGAAGTTCCC 59.298 42.308 6.78 0.00 35.76 3.97
2451 6351 7.265673 TGCTTGATGTACACTATAGAAGTTCC 58.734 38.462 6.78 0.76 35.76 3.62
2452 6352 8.879342 ATGCTTGATGTACACTATAGAAGTTC 57.121 34.615 6.78 0.00 35.76 3.01
2453 6353 9.672673 AAATGCTTGATGTACACTATAGAAGTT 57.327 29.630 6.78 0.00 35.76 2.66
2454 6354 9.319143 GAAATGCTTGATGTACACTATAGAAGT 57.681 33.333 6.78 7.25 39.81 3.01
2455 6355 8.768955 GGAAATGCTTGATGTACACTATAGAAG 58.231 37.037 6.78 1.02 0.00 2.85
2456 6356 7.715249 GGGAAATGCTTGATGTACACTATAGAA 59.285 37.037 6.78 0.00 0.00 2.10
2457 6357 7.217200 GGGAAATGCTTGATGTACACTATAGA 58.783 38.462 6.78 0.00 0.00 1.98
2458 6358 6.428159 GGGGAAATGCTTGATGTACACTATAG 59.572 42.308 0.00 0.00 0.00 1.31
2483 6383 0.833287 ACCACCATCTGAGGAATCCG 59.167 55.000 0.00 0.00 0.00 4.18
2489 6389 4.335416 ACAACAATAACCACCATCTGAGG 58.665 43.478 0.00 0.00 0.00 3.86
2498 6398 4.271533 TCGTCAGTCAACAACAATAACCAC 59.728 41.667 0.00 0.00 0.00 4.16
2538 6438 6.793349 AGATGCTGAGCACAATCTTAATTTC 58.207 36.000 10.33 0.00 43.04 2.17
2539 6439 6.376299 TGAGATGCTGAGCACAATCTTAATTT 59.624 34.615 10.33 0.00 43.04 1.82
2541 6441 5.434408 TGAGATGCTGAGCACAATCTTAAT 58.566 37.500 10.33 0.00 43.04 1.40
2542 6442 4.835678 TGAGATGCTGAGCACAATCTTAA 58.164 39.130 10.33 0.00 43.04 1.85
2544 6444 3.345508 TGAGATGCTGAGCACAATCTT 57.654 42.857 10.33 0.00 43.04 2.40
2565 6466 3.525609 TCCCAACTAATCCACCATTAGCA 59.474 43.478 1.95 0.00 45.79 3.49
2570 6471 4.608170 AACATCCCAACTAATCCACCAT 57.392 40.909 0.00 0.00 0.00 3.55
2586 6487 1.070175 CAACGACCGGTCACAAACATC 60.070 52.381 32.80 4.66 0.00 3.06
2587 6488 0.941542 CAACGACCGGTCACAAACAT 59.058 50.000 32.80 8.47 0.00 2.71
2616 6517 4.746466 ACCCCAAAAATACACCATCTCAA 58.254 39.130 0.00 0.00 0.00 3.02
2617 6518 4.396357 ACCCCAAAAATACACCATCTCA 57.604 40.909 0.00 0.00 0.00 3.27
2618 6519 5.738619 AAACCCCAAAAATACACCATCTC 57.261 39.130 0.00 0.00 0.00 2.75
2635 6536 9.923143 AATAGACAAGCTGTAAAAATTAAACCC 57.077 29.630 0.00 0.00 0.00 4.11
2642 6543 9.686683 AGATACCAATAGACAAGCTGTAAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
2674 6578 5.022021 GCATGTACGTAACAAAATCTCAGC 58.978 41.667 0.00 0.00 42.70 4.26
2688 6592 5.842907 TGAATCAGCTAATAGCATGTACGT 58.157 37.500 15.28 0.00 45.56 3.57
2712 6616 2.826428 TGCAGGCGATAAATCAGAGTC 58.174 47.619 0.00 0.00 0.00 3.36
2715 6619 1.875514 GCATGCAGGCGATAAATCAGA 59.124 47.619 14.21 0.00 0.00 3.27
2716 6620 1.878088 AGCATGCAGGCGATAAATCAG 59.122 47.619 21.98 0.00 39.27 2.90
2725 6629 0.098376 GAAGAGAAAGCATGCAGGCG 59.902 55.000 21.98 0.00 39.27 5.52
2763 6667 2.690497 TCAGGCACATCAGAGCTAGTAC 59.310 50.000 0.00 0.00 0.00 2.73
2819 6725 9.472361 CTGATTTCAATTCAATCAAAGAGTGTT 57.528 29.630 9.75 0.00 39.59 3.32
2832 6738 6.374333 GGGCACTAACTACTGATTTCAATTCA 59.626 38.462 0.00 0.00 0.00 2.57
2836 6742 4.250464 CGGGCACTAACTACTGATTTCAA 58.750 43.478 0.00 0.00 0.00 2.69
2855 7272 1.753930 ATAAAAGGGTTAACGCCGGG 58.246 50.000 18.16 0.00 0.00 5.73
2882 7299 7.889589 TGTAGACATACATTTGTTGTCTGAG 57.110 36.000 23.61 0.00 41.63 3.35
3018 7658 5.682234 TTCTGAACCTGCTCAATGATCTA 57.318 39.130 0.00 0.00 0.00 1.98
3154 7800 6.154363 CCTGTAATCAAACCATACCAAACCAT 59.846 38.462 0.00 0.00 0.00 3.55
3157 7803 6.386654 CACCTGTAATCAAACCATACCAAAC 58.613 40.000 0.00 0.00 0.00 2.93
3161 7807 4.096382 CAGCACCTGTAATCAAACCATACC 59.904 45.833 0.00 0.00 0.00 2.73
3162 7808 4.700213 ACAGCACCTGTAATCAAACCATAC 59.300 41.667 0.00 0.00 43.46 2.39
3163 7809 4.699735 CACAGCACCTGTAATCAAACCATA 59.300 41.667 0.00 0.00 43.43 2.74
3164 7810 3.507233 CACAGCACCTGTAATCAAACCAT 59.493 43.478 0.00 0.00 43.43 3.55
3165 7811 2.884012 CACAGCACCTGTAATCAAACCA 59.116 45.455 0.00 0.00 43.43 3.67
3166 7812 2.351738 GCACAGCACCTGTAATCAAACC 60.352 50.000 0.00 0.00 43.43 3.27
3167 7813 2.554032 AGCACAGCACCTGTAATCAAAC 59.446 45.455 0.00 0.00 43.43 2.93
3168 7814 2.553602 CAGCACAGCACCTGTAATCAAA 59.446 45.455 0.00 0.00 43.43 2.69
3169 7815 2.153645 CAGCACAGCACCTGTAATCAA 58.846 47.619 0.00 0.00 43.43 2.57
3170 7816 1.611410 CCAGCACAGCACCTGTAATCA 60.611 52.381 0.00 0.00 43.43 2.57
3171 7817 1.089920 CCAGCACAGCACCTGTAATC 58.910 55.000 0.00 0.00 43.43 1.75
3172 7818 0.962356 GCCAGCACAGCACCTGTAAT 60.962 55.000 0.00 0.00 43.43 1.89
3173 7819 1.600636 GCCAGCACAGCACCTGTAA 60.601 57.895 0.00 0.00 43.43 2.41
3174 7820 2.032528 GCCAGCACAGCACCTGTA 59.967 61.111 0.00 0.00 43.43 2.74
3175 7821 3.882326 AGCCAGCACAGCACCTGT 61.882 61.111 0.00 0.00 46.51 4.00
3176 7822 3.362797 CAGCCAGCACAGCACCTG 61.363 66.667 0.00 0.00 37.52 4.00
3177 7823 4.655647 CCAGCCAGCACAGCACCT 62.656 66.667 0.00 0.00 0.00 4.00
3197 7843 2.159517 GGAACAAATAGGCAAGCGTGAG 60.160 50.000 2.99 0.00 0.00 3.51
3198 7844 1.810151 GGAACAAATAGGCAAGCGTGA 59.190 47.619 2.99 0.00 0.00 4.35
3199 7845 1.135402 GGGAACAAATAGGCAAGCGTG 60.135 52.381 0.00 0.00 0.00 5.34
3200 7846 1.173913 GGGAACAAATAGGCAAGCGT 58.826 50.000 0.00 0.00 0.00 5.07
3201 7847 0.455815 GGGGAACAAATAGGCAAGCG 59.544 55.000 0.00 0.00 0.00 4.68
3202 7848 1.852633 AGGGGAACAAATAGGCAAGC 58.147 50.000 0.00 0.00 0.00 4.01
3203 7849 3.193479 GTGAAGGGGAACAAATAGGCAAG 59.807 47.826 0.00 0.00 0.00 4.01
3204 7850 3.161866 GTGAAGGGGAACAAATAGGCAA 58.838 45.455 0.00 0.00 0.00 4.52
3205 7851 2.378547 AGTGAAGGGGAACAAATAGGCA 59.621 45.455 0.00 0.00 0.00 4.75
3206 7852 3.017442 GAGTGAAGGGGAACAAATAGGC 58.983 50.000 0.00 0.00 0.00 3.93
3207 7853 3.267031 AGGAGTGAAGGGGAACAAATAGG 59.733 47.826 0.00 0.00 0.00 2.57
3208 7854 4.576330 AGGAGTGAAGGGGAACAAATAG 57.424 45.455 0.00 0.00 0.00 1.73
3209 7855 4.352595 TGAAGGAGTGAAGGGGAACAAATA 59.647 41.667 0.00 0.00 0.00 1.40
3210 7856 3.140144 TGAAGGAGTGAAGGGGAACAAAT 59.860 43.478 0.00 0.00 0.00 2.32
3211 7857 2.512056 TGAAGGAGTGAAGGGGAACAAA 59.488 45.455 0.00 0.00 0.00 2.83
3212 7858 2.106511 CTGAAGGAGTGAAGGGGAACAA 59.893 50.000 0.00 0.00 0.00 2.83
3213 7859 1.699634 CTGAAGGAGTGAAGGGGAACA 59.300 52.381 0.00 0.00 0.00 3.18
3214 7860 1.003696 CCTGAAGGAGTGAAGGGGAAC 59.996 57.143 0.00 0.00 37.39 3.62
3215 7861 1.362224 CCTGAAGGAGTGAAGGGGAA 58.638 55.000 0.00 0.00 37.39 3.97
3216 7862 1.201429 GCCTGAAGGAGTGAAGGGGA 61.201 60.000 0.00 0.00 37.39 4.81
3217 7863 1.301293 GCCTGAAGGAGTGAAGGGG 59.699 63.158 0.00 0.00 37.39 4.79
3218 7864 0.622665 ATGCCTGAAGGAGTGAAGGG 59.377 55.000 0.00 0.00 37.39 3.95
3219 7865 2.237143 TGTATGCCTGAAGGAGTGAAGG 59.763 50.000 0.00 0.00 37.39 3.46
3220 7866 3.616956 TGTATGCCTGAAGGAGTGAAG 57.383 47.619 0.00 0.00 37.39 3.02
3221 7867 3.072330 TGTTGTATGCCTGAAGGAGTGAA 59.928 43.478 0.00 0.00 37.39 3.18
3222 7868 2.637382 TGTTGTATGCCTGAAGGAGTGA 59.363 45.455 0.00 0.00 37.39 3.41
3223 7869 3.005554 CTGTTGTATGCCTGAAGGAGTG 58.994 50.000 0.00 0.00 37.39 3.51
3224 7870 2.616510 GCTGTTGTATGCCTGAAGGAGT 60.617 50.000 0.00 0.00 37.39 3.85
3225 7871 2.012673 GCTGTTGTATGCCTGAAGGAG 58.987 52.381 0.00 0.00 37.39 3.69
3226 7872 1.630369 AGCTGTTGTATGCCTGAAGGA 59.370 47.619 0.00 0.00 37.39 3.36
3227 7873 1.741706 CAGCTGTTGTATGCCTGAAGG 59.258 52.381 5.25 0.00 38.53 3.46
3228 7874 2.703416 TCAGCTGTTGTATGCCTGAAG 58.297 47.619 14.67 0.00 0.00 3.02
3229 7875 2.857186 TCAGCTGTTGTATGCCTGAA 57.143 45.000 14.67 0.00 0.00 3.02
3230 7876 2.703416 CTTCAGCTGTTGTATGCCTGA 58.297 47.619 14.67 0.00 0.00 3.86
3231 7877 1.131883 GCTTCAGCTGTTGTATGCCTG 59.868 52.381 14.67 0.00 38.21 4.85
3232 7878 1.457346 GCTTCAGCTGTTGTATGCCT 58.543 50.000 14.67 0.00 38.21 4.75
3233 7879 0.453390 GGCTTCAGCTGTTGTATGCC 59.547 55.000 14.67 13.33 41.70 4.40
3234 7880 1.167851 TGGCTTCAGCTGTTGTATGC 58.832 50.000 14.67 7.96 41.70 3.14
3235 7881 3.921119 TTTGGCTTCAGCTGTTGTATG 57.079 42.857 14.67 0.00 41.70 2.39
3236 7882 4.099266 TGTTTTTGGCTTCAGCTGTTGTAT 59.901 37.500 14.67 0.00 41.70 2.29
3237 7883 3.445450 TGTTTTTGGCTTCAGCTGTTGTA 59.555 39.130 14.67 0.00 41.70 2.41
3238 7884 2.233431 TGTTTTTGGCTTCAGCTGTTGT 59.767 40.909 14.67 0.00 41.70 3.32
3239 7885 2.604462 GTGTTTTTGGCTTCAGCTGTTG 59.396 45.455 14.67 8.89 41.70 3.33
3240 7886 2.418609 GGTGTTTTTGGCTTCAGCTGTT 60.419 45.455 14.67 0.00 41.70 3.16
3241 7887 1.136891 GGTGTTTTTGGCTTCAGCTGT 59.863 47.619 14.67 0.00 41.70 4.40
3242 7888 1.538849 GGGTGTTTTTGGCTTCAGCTG 60.539 52.381 7.63 7.63 41.70 4.24
3243 7889 0.752658 GGGTGTTTTTGGCTTCAGCT 59.247 50.000 0.00 0.00 41.70 4.24
3244 7890 0.463620 TGGGTGTTTTTGGCTTCAGC 59.536 50.000 0.00 0.00 41.14 4.26
3245 7891 2.483538 CCTTGGGTGTTTTTGGCTTCAG 60.484 50.000 0.00 0.00 0.00 3.02
3246 7892 1.484240 CCTTGGGTGTTTTTGGCTTCA 59.516 47.619 0.00 0.00 0.00 3.02
3247 7893 1.484653 ACCTTGGGTGTTTTTGGCTTC 59.515 47.619 0.00 0.00 32.98 3.86
3248 7894 1.484653 GACCTTGGGTGTTTTTGGCTT 59.515 47.619 0.00 0.00 35.25 4.35
3249 7895 1.119684 GACCTTGGGTGTTTTTGGCT 58.880 50.000 0.00 0.00 35.25 4.75
3250 7896 0.105964 GGACCTTGGGTGTTTTTGGC 59.894 55.000 0.00 0.00 35.25 4.52
3251 7897 0.756294 GGGACCTTGGGTGTTTTTGG 59.244 55.000 0.00 0.00 35.25 3.28
3252 7898 1.686587 GAGGGACCTTGGGTGTTTTTG 59.313 52.381 0.00 0.00 35.25 2.44
3253 7899 1.289530 TGAGGGACCTTGGGTGTTTTT 59.710 47.619 0.00 0.00 35.25 1.94
3254 7900 0.930726 TGAGGGACCTTGGGTGTTTT 59.069 50.000 0.00 0.00 35.25 2.43
3255 7901 0.478507 CTGAGGGACCTTGGGTGTTT 59.521 55.000 0.00 0.00 35.25 2.83
3256 7902 0.401395 TCTGAGGGACCTTGGGTGTT 60.401 55.000 0.00 0.00 35.25 3.32
3257 7903 0.401395 TTCTGAGGGACCTTGGGTGT 60.401 55.000 0.00 0.00 35.25 4.16
3258 7904 0.326264 CTTCTGAGGGACCTTGGGTG 59.674 60.000 0.00 0.00 35.25 4.61
3259 7905 0.193574 TCTTCTGAGGGACCTTGGGT 59.806 55.000 0.00 0.00 39.44 4.51
3260 7906 1.488393 GATCTTCTGAGGGACCTTGGG 59.512 57.143 0.00 0.00 0.00 4.12
3261 7907 2.433970 GAGATCTTCTGAGGGACCTTGG 59.566 54.545 0.00 0.00 0.00 3.61
3262 7908 3.102972 TGAGATCTTCTGAGGGACCTTG 58.897 50.000 0.00 0.00 0.00 3.61
3263 7909 3.481559 TGAGATCTTCTGAGGGACCTT 57.518 47.619 0.00 0.00 0.00 3.50
3264 7910 3.481559 TTGAGATCTTCTGAGGGACCT 57.518 47.619 0.00 0.00 0.00 3.85
3265 7911 3.966665 AGATTGAGATCTTCTGAGGGACC 59.033 47.826 0.00 0.00 39.63 4.46
3266 7912 4.740334 GCAGATTGAGATCTTCTGAGGGAC 60.740 50.000 21.84 4.93 40.67 4.46
3267 7913 3.387374 GCAGATTGAGATCTTCTGAGGGA 59.613 47.826 21.84 0.00 40.67 4.20
3268 7914 3.134262 TGCAGATTGAGATCTTCTGAGGG 59.866 47.826 21.84 1.58 40.67 4.30
3269 7915 4.121317 GTGCAGATTGAGATCTTCTGAGG 58.879 47.826 21.84 3.24 40.67 3.86
3270 7916 3.797796 CGTGCAGATTGAGATCTTCTGAG 59.202 47.826 21.84 11.10 40.67 3.35
3271 7917 3.778618 CGTGCAGATTGAGATCTTCTGA 58.221 45.455 21.84 8.34 40.67 3.27
3272 7918 2.284684 GCGTGCAGATTGAGATCTTCTG 59.715 50.000 15.71 15.71 40.67 3.02
3273 7919 2.548875 GCGTGCAGATTGAGATCTTCT 58.451 47.619 0.00 0.00 40.67 2.85
3274 7920 1.596727 GGCGTGCAGATTGAGATCTTC 59.403 52.381 0.00 0.00 40.67 2.87
3275 7921 1.661341 GGCGTGCAGATTGAGATCTT 58.339 50.000 0.00 0.00 40.67 2.40
3276 7922 0.529337 CGGCGTGCAGATTGAGATCT 60.529 55.000 0.00 0.00 43.43 2.75
3277 7923 1.493950 CCGGCGTGCAGATTGAGATC 61.494 60.000 6.01 0.00 0.00 2.75
3278 7924 1.522355 CCGGCGTGCAGATTGAGAT 60.522 57.895 6.01 0.00 0.00 2.75
3279 7925 2.125552 CCGGCGTGCAGATTGAGA 60.126 61.111 6.01 0.00 0.00 3.27
3280 7926 2.930385 ATCCCGGCGTGCAGATTGAG 62.930 60.000 6.01 0.00 0.00 3.02
3281 7927 1.681486 TATCCCGGCGTGCAGATTGA 61.681 55.000 6.01 0.00 0.00 2.57
3282 7928 1.224069 CTATCCCGGCGTGCAGATTG 61.224 60.000 6.01 0.15 0.00 2.67
3283 7929 1.069765 CTATCCCGGCGTGCAGATT 59.930 57.895 6.01 0.00 0.00 2.40
3284 7930 2.088674 GACTATCCCGGCGTGCAGAT 62.089 60.000 6.01 5.21 0.00 2.90
3285 7931 2.758327 ACTATCCCGGCGTGCAGA 60.758 61.111 6.01 0.00 0.00 4.26
3286 7932 2.279517 GACTATCCCGGCGTGCAG 60.280 66.667 6.01 0.00 0.00 4.41
3287 7933 2.292794 GAAGACTATCCCGGCGTGCA 62.293 60.000 6.01 0.00 0.00 4.57
3288 7934 1.591863 GAAGACTATCCCGGCGTGC 60.592 63.158 6.01 0.00 0.00 5.34
3289 7935 0.249073 CTGAAGACTATCCCGGCGTG 60.249 60.000 6.01 0.00 0.00 5.34
3290 7936 1.392710 CCTGAAGACTATCCCGGCGT 61.393 60.000 6.01 0.00 0.00 5.68
3291 7937 1.107538 TCCTGAAGACTATCCCGGCG 61.108 60.000 0.00 0.00 0.00 6.46
3292 7938 0.676736 CTCCTGAAGACTATCCCGGC 59.323 60.000 0.00 0.00 0.00 6.13
3293 7939 2.366640 TCTCCTGAAGACTATCCCGG 57.633 55.000 0.00 0.00 0.00 5.73
3294 7940 4.737855 TTTTCTCCTGAAGACTATCCCG 57.262 45.455 0.00 0.00 32.27 5.14
3314 7960 0.250424 GCATGTGCCTTGGCCTTTTT 60.250 50.000 3.32 0.00 34.31 1.94
3315 7961 1.372307 GCATGTGCCTTGGCCTTTT 59.628 52.632 3.32 0.00 34.31 2.27
3316 7962 3.062639 GCATGTGCCTTGGCCTTT 58.937 55.556 3.32 0.00 34.31 3.11
3326 7972 0.817654 GGAAAAGGTAGGGCATGTGC 59.182 55.000 0.00 0.00 41.14 4.57
3327 7973 2.514458 AGGAAAAGGTAGGGCATGTG 57.486 50.000 0.00 0.00 0.00 3.21
3328 7974 6.530601 AATATAGGAAAAGGTAGGGCATGT 57.469 37.500 0.00 0.00 0.00 3.21
3329 7975 7.067494 GCATAATATAGGAAAAGGTAGGGCATG 59.933 40.741 0.00 0.00 0.00 4.06
3330 7976 7.036571 AGCATAATATAGGAAAAGGTAGGGCAT 60.037 37.037 0.00 0.00 0.00 4.40
3331 7977 6.274672 AGCATAATATAGGAAAAGGTAGGGCA 59.725 38.462 0.00 0.00 0.00 5.36
3332 7978 6.722328 AGCATAATATAGGAAAAGGTAGGGC 58.278 40.000 0.00 0.00 0.00 5.19
3333 7979 7.918076 TGAGCATAATATAGGAAAAGGTAGGG 58.082 38.462 0.00 0.00 0.00 3.53
3334 7980 9.793259 TTTGAGCATAATATAGGAAAAGGTAGG 57.207 33.333 0.00 0.00 0.00 3.18
3336 7982 9.569122 GGTTTGAGCATAATATAGGAAAAGGTA 57.431 33.333 0.00 0.00 0.00 3.08
3337 7983 7.505923 GGGTTTGAGCATAATATAGGAAAAGGT 59.494 37.037 0.00 0.00 0.00 3.50
3338 7984 7.039714 GGGGTTTGAGCATAATATAGGAAAAGG 60.040 40.741 0.00 0.00 0.00 3.11
3339 7985 7.308589 CGGGGTTTGAGCATAATATAGGAAAAG 60.309 40.741 0.00 0.00 0.00 2.27
3340 7986 6.488683 CGGGGTTTGAGCATAATATAGGAAAA 59.511 38.462 0.00 0.00 0.00 2.29
3341 7987 6.001460 CGGGGTTTGAGCATAATATAGGAAA 58.999 40.000 0.00 0.00 0.00 3.13
3342 7988 5.556915 CGGGGTTTGAGCATAATATAGGAA 58.443 41.667 0.00 0.00 0.00 3.36
3343 7989 4.564821 GCGGGGTTTGAGCATAATATAGGA 60.565 45.833 0.00 0.00 0.00 2.94
3344 7990 3.689649 GCGGGGTTTGAGCATAATATAGG 59.310 47.826 0.00 0.00 0.00 2.57
3345 7991 3.689649 GGCGGGGTTTGAGCATAATATAG 59.310 47.826 0.00 0.00 0.00 1.31
3346 7992 3.560453 GGGCGGGGTTTGAGCATAATATA 60.560 47.826 0.00 0.00 0.00 0.86
3347 7993 2.514803 GGCGGGGTTTGAGCATAATAT 58.485 47.619 0.00 0.00 0.00 1.28
3348 7994 1.477923 GGGCGGGGTTTGAGCATAATA 60.478 52.381 0.00 0.00 0.00 0.98
3349 7995 0.755327 GGGCGGGGTTTGAGCATAAT 60.755 55.000 0.00 0.00 0.00 1.28
3350 7996 1.379309 GGGCGGGGTTTGAGCATAA 60.379 57.895 0.00 0.00 0.00 1.90
3351 7997 2.274104 GGGCGGGGTTTGAGCATA 59.726 61.111 0.00 0.00 0.00 3.14
3352 7998 3.944250 CTGGGCGGGGTTTGAGCAT 62.944 63.158 0.00 0.00 0.00 3.79
3353 7999 4.659172 CTGGGCGGGGTTTGAGCA 62.659 66.667 0.00 0.00 0.00 4.26
3354 8000 4.660938 ACTGGGCGGGGTTTGAGC 62.661 66.667 0.00 0.00 0.00 4.26
3355 8001 2.672996 CACTGGGCGGGGTTTGAG 60.673 66.667 0.00 0.00 0.00 3.02
3356 8002 3.485346 GACACTGGGCGGGGTTTGA 62.485 63.158 0.00 0.00 0.00 2.69
3357 8003 2.983592 GACACTGGGCGGGGTTTG 60.984 66.667 0.00 0.00 0.00 2.93
3358 8004 4.280019 GGACACTGGGCGGGGTTT 62.280 66.667 0.00 0.00 0.00 3.27
3361 8007 4.278513 TTTGGACACTGGGCGGGG 62.279 66.667 0.00 0.00 0.00 5.73
3362 8008 2.672996 CTTTGGACACTGGGCGGG 60.673 66.667 0.00 0.00 0.00 6.13
3363 8009 1.966451 GTCTTTGGACACTGGGCGG 60.966 63.158 0.00 0.00 41.75 6.13
3364 8010 1.227823 TGTCTTTGGACACTGGGCG 60.228 57.895 0.00 0.00 46.19 6.13
3365 8011 4.898607 TGTCTTTGGACACTGGGC 57.101 55.556 0.00 0.00 46.19 5.36
3372 8018 3.248602 GGCATATGATCGTGTCTTTGGAC 59.751 47.826 6.97 0.00 42.42 4.02
3373 8019 3.466836 GGCATATGATCGTGTCTTTGGA 58.533 45.455 6.97 0.00 0.00 3.53
3374 8020 2.221749 CGGCATATGATCGTGTCTTTGG 59.778 50.000 6.97 0.00 0.00 3.28
3375 8021 2.866156 ACGGCATATGATCGTGTCTTTG 59.134 45.455 19.02 0.00 35.70 2.77
3376 8022 3.123804 GACGGCATATGATCGTGTCTTT 58.876 45.455 22.86 4.00 37.25 2.52
3377 8023 2.100749 TGACGGCATATGATCGTGTCTT 59.899 45.455 22.86 4.57 37.25 3.01
3378 8024 1.681264 TGACGGCATATGATCGTGTCT 59.319 47.619 22.86 4.87 37.25 3.41
3379 8025 1.787155 GTGACGGCATATGATCGTGTC 59.213 52.381 22.86 14.38 37.25 3.67
3380 8026 1.538204 GGTGACGGCATATGATCGTGT 60.538 52.381 22.86 7.20 37.25 4.49
3381 8027 1.139989 GGTGACGGCATATGATCGTG 58.860 55.000 22.86 4.46 37.25 4.35
3382 8028 0.033504 GGGTGACGGCATATGATCGT 59.966 55.000 19.54 19.54 39.99 3.73
3383 8029 0.318441 AGGGTGACGGCATATGATCG 59.682 55.000 6.97 11.72 0.00 3.69
3384 8030 1.670087 CGAGGGTGACGGCATATGATC 60.670 57.143 6.97 1.01 0.00 2.92
3385 8031 0.318441 CGAGGGTGACGGCATATGAT 59.682 55.000 6.97 0.00 0.00 2.45
3386 8032 1.739667 CGAGGGTGACGGCATATGA 59.260 57.895 6.97 0.00 0.00 2.15
3387 8033 1.300931 CCGAGGGTGACGGCATATG 60.301 63.158 0.00 0.00 43.74 1.78
3388 8034 3.138625 CCGAGGGTGACGGCATAT 58.861 61.111 0.00 0.00 43.74 1.78
3394 8040 3.642901 CATAGAACCGAGGGTGACG 57.357 57.895 0.00 0.00 35.34 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.