Multiple sequence alignment - TraesCS3B01G422100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G422100 chr3B 100.000 3932 0 0 1 3932 659075960 659079891 0.000000e+00 7262.0
1 TraesCS3B01G422100 chr3B 82.719 787 98 21 2218 2976 684109504 684108728 0.000000e+00 665.0
2 TraesCS3B01G422100 chr3B 82.592 517 72 16 2475 2985 683786694 683786190 1.300000e-119 440.0
3 TraesCS3B01G422100 chr3B 86.424 302 35 4 2218 2514 684060025 684059725 3.790000e-85 326.0
4 TraesCS3B01G422100 chr3B 84.052 232 31 4 2271 2501 684066578 684066352 6.620000e-53 219.0
5 TraesCS3B01G422100 chr3B 83.333 168 28 0 3765 3932 683761075 683760908 5.260000e-34 156.0
6 TraesCS3B01G422100 chr3B 82.143 168 30 0 3765 3932 684042722 684042555 1.140000e-30 145.0
7 TraesCS3B01G422100 chr3B 82.143 168 30 0 3765 3932 684098076 684097909 1.140000e-30 145.0
8 TraesCS3B01G422100 chr3B 100.000 30 0 0 3278 3307 659079173 659079202 5.490000e-04 56.5
9 TraesCS3B01G422100 chr3B 100.000 30 0 0 3214 3243 659079237 659079266 5.490000e-04 56.5
10 TraesCS3B01G422100 chr3D 92.728 3039 153 29 1 3017 498115436 498118428 0.000000e+00 4325.0
11 TraesCS3B01G422100 chr3D 80.545 771 94 29 2234 2976 519384628 519383886 3.460000e-150 542.0
12 TraesCS3B01G422100 chr3D 83.705 583 58 15 3352 3928 498205767 498206318 2.090000e-142 516.0
13 TraesCS3B01G422100 chr3D 81.836 501 83 5 2477 2976 519378703 519378210 7.860000e-112 414.0
14 TraesCS3B01G422100 chr3D 89.773 264 23 3 2752 3013 498138935 498139196 6.300000e-88 335.0
15 TraesCS3B01G422100 chr3D 88.372 215 24 1 2218 2431 519378911 519378697 1.400000e-64 257.0
16 TraesCS3B01G422100 chr3D 96.212 132 5 0 3072 3203 498204753 498204884 2.380000e-52 217.0
17 TraesCS3B01G422100 chr3D 90.667 150 14 0 3783 3932 519376144 519375995 2.400000e-47 200.0
18 TraesCS3B01G422100 chr3D 82.320 181 28 4 2800 2976 519389064 519388884 1.890000e-33 154.0
19 TraesCS3B01G422100 chr3D 88.430 121 13 1 3234 3354 498205139 498205258 1.140000e-30 145.0
20 TraesCS3B01G422100 chr3A 92.176 2505 158 22 535 3017 636128580 636126092 0.000000e+00 3506.0
21 TraesCS3B01G422100 chr3A 91.864 2495 145 28 535 3013 635787767 635785315 0.000000e+00 3430.0
22 TraesCS3B01G422100 chr3A 89.087 898 56 19 3043 3928 638332470 638333337 0.000000e+00 1077.0
23 TraesCS3B01G422100 chr3A 83.549 772 103 18 2218 2976 654402322 654401562 0.000000e+00 701.0
24 TraesCS3B01G422100 chr3A 85.921 483 62 6 2497 2976 654396093 654395614 9.750000e-141 510.0
25 TraesCS3B01G422100 chr3A 91.860 86 7 0 3238 3323 636120195 636120110 1.920000e-23 121.0
26 TraesCS3B01G422100 chr3A 100.000 30 0 0 3278 3307 638332647 638332676 5.490000e-04 56.5
27 TraesCS3B01G422100 chr3A 100.000 30 0 0 3214 3243 638332711 638332740 5.490000e-04 56.5
28 TraesCS3B01G422100 chr6A 87.973 291 27 4 1727 2016 85594131 85594414 1.750000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G422100 chr3B 659075960 659079891 3931 False 2458.333333 7262 100.000000 1 3932 3 chr3B.!!$F1 3931
1 TraesCS3B01G422100 chr3B 684108728 684109504 776 True 665.000000 665 82.719000 2218 2976 1 chr3B.!!$R7 758
2 TraesCS3B01G422100 chr3B 683786190 683786694 504 True 440.000000 440 82.592000 2475 2985 1 chr3B.!!$R2 510
3 TraesCS3B01G422100 chr3D 498115436 498118428 2992 False 4325.000000 4325 92.728000 1 3017 1 chr3D.!!$F1 3016
4 TraesCS3B01G422100 chr3D 519383886 519384628 742 True 542.000000 542 80.545000 2234 2976 1 chr3D.!!$R1 742
5 TraesCS3B01G422100 chr3D 498204753 498206318 1565 False 292.666667 516 89.449000 3072 3928 3 chr3D.!!$F3 856
6 TraesCS3B01G422100 chr3D 519375995 519378911 2916 True 290.333333 414 86.958333 2218 3932 3 chr3D.!!$R3 1714
7 TraesCS3B01G422100 chr3A 636126092 636128580 2488 True 3506.000000 3506 92.176000 535 3017 1 chr3A.!!$R3 2482
8 TraesCS3B01G422100 chr3A 635785315 635787767 2452 True 3430.000000 3430 91.864000 535 3013 1 chr3A.!!$R1 2478
9 TraesCS3B01G422100 chr3A 654401562 654402322 760 True 701.000000 701 83.549000 2218 2976 1 chr3A.!!$R5 758
10 TraesCS3B01G422100 chr3A 638332470 638333337 867 False 396.666667 1077 96.362333 3043 3928 3 chr3A.!!$F1 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 224 0.030235 CGATGCCTTACCGATCGACA 59.970 55.000 18.66 5.09 41.18 4.35 F
1294 1330 0.307760 GCCAGTTTGGTGTCGACAAG 59.692 55.000 21.95 4.39 40.46 3.16 F
1316 1353 0.321653 GGAGACGGCTGTGGACATTT 60.322 55.000 0.80 0.00 0.00 2.32 F
2656 2733 1.141053 GGGTATCCAACGAGCCTGAAT 59.859 52.381 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1408 1.078637 TGCTGCTGCTCCTGCTAAG 60.079 57.895 17.0 0.0 40.48 2.18 R
2682 2759 0.671781 ACTGCTCAAGATGACGGTGC 60.672 55.000 0.0 0.0 0.00 5.01 R
2778 2859 1.541233 GGTTCTATGGACATCCGCCTG 60.541 57.143 0.0 0.0 39.43 4.85 R
3586 5801 0.448593 CCGGTCGTTGTTGTTGTTGT 59.551 50.000 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 79 0.537143 AGCCAAACAACGCCTCATGA 60.537 50.000 0.00 0.00 0.00 3.07
87 90 3.872696 ACGCCTCATGATATGAACACAA 58.127 40.909 0.00 0.00 39.11 3.33
94 97 3.306917 TGATATGAACACAACCGACGT 57.693 42.857 0.00 0.00 0.00 4.34
120 123 2.430244 AGCACGTCGTAGCCGTTG 60.430 61.111 13.70 0.00 41.73 4.10
142 145 1.944709 GGTTGCACGTCTAGTTTGGTT 59.055 47.619 0.00 0.00 0.00 3.67
144 147 3.749609 GGTTGCACGTCTAGTTTGGTTAT 59.250 43.478 0.00 0.00 0.00 1.89
150 153 5.407387 GCACGTCTAGTTTGGTTATCTTTGA 59.593 40.000 0.00 0.00 0.00 2.69
158 162 7.054491 AGTTTGGTTATCTTTGATTGTGCTT 57.946 32.000 0.00 0.00 0.00 3.91
193 197 0.106819 AATGCATCAGCTCACCTCCC 60.107 55.000 0.00 0.00 42.74 4.30
195 199 1.153208 GCATCAGCTCACCTCCCAG 60.153 63.158 0.00 0.00 37.91 4.45
197 201 1.692042 ATCAGCTCACCTCCCAGGG 60.692 63.158 0.00 0.00 40.58 4.45
218 222 2.710440 TCGATGCCTTACCGATCGA 58.290 52.632 18.66 0.00 44.21 3.59
219 223 0.309922 TCGATGCCTTACCGATCGAC 59.690 55.000 18.66 0.00 42.20 4.20
220 224 0.030235 CGATGCCTTACCGATCGACA 59.970 55.000 18.66 5.09 41.18 4.35
221 225 1.772182 GATGCCTTACCGATCGACAG 58.228 55.000 18.66 8.85 0.00 3.51
222 226 1.067212 GATGCCTTACCGATCGACAGT 59.933 52.381 18.66 8.79 0.00 3.55
223 227 0.454600 TGCCTTACCGATCGACAGTC 59.545 55.000 18.66 0.00 0.00 3.51
224 228 0.454600 GCCTTACCGATCGACAGTCA 59.545 55.000 18.66 0.00 0.00 3.41
225 229 1.798079 GCCTTACCGATCGACAGTCAC 60.798 57.143 18.66 0.00 0.00 3.67
226 230 1.471287 CCTTACCGATCGACAGTCACA 59.529 52.381 18.66 0.00 0.00 3.58
227 231 2.478031 CCTTACCGATCGACAGTCACAG 60.478 54.545 18.66 0.00 0.00 3.66
228 232 2.103537 TACCGATCGACAGTCACAGA 57.896 50.000 18.66 0.00 0.00 3.41
229 233 0.805614 ACCGATCGACAGTCACAGAG 59.194 55.000 18.66 0.00 0.00 3.35
230 234 0.805614 CCGATCGACAGTCACAGAGT 59.194 55.000 18.66 0.00 0.00 3.24
231 235 1.200252 CCGATCGACAGTCACAGAGTT 59.800 52.381 18.66 0.00 0.00 3.01
232 236 2.351835 CCGATCGACAGTCACAGAGTTT 60.352 50.000 18.66 0.00 0.00 2.66
233 237 3.309388 CGATCGACAGTCACAGAGTTTT 58.691 45.455 10.26 0.00 0.00 2.43
234 238 3.736252 CGATCGACAGTCACAGAGTTTTT 59.264 43.478 10.26 0.00 0.00 1.94
235 239 4.375405 CGATCGACAGTCACAGAGTTTTTG 60.375 45.833 10.26 0.00 0.00 2.44
236 240 3.857052 TCGACAGTCACAGAGTTTTTGT 58.143 40.909 0.41 0.00 0.00 2.83
237 241 5.001237 TCGACAGTCACAGAGTTTTTGTA 57.999 39.130 0.41 0.00 0.00 2.41
238 242 5.041287 TCGACAGTCACAGAGTTTTTGTAG 58.959 41.667 0.41 0.00 0.00 2.74
239 243 4.318121 CGACAGTCACAGAGTTTTTGTAGC 60.318 45.833 0.41 0.00 0.00 3.58
240 244 4.770795 ACAGTCACAGAGTTTTTGTAGCT 58.229 39.130 0.00 0.00 0.00 3.32
241 245 4.572389 ACAGTCACAGAGTTTTTGTAGCTG 59.428 41.667 0.00 0.00 36.46 4.24
253 257 4.870123 TTTGTAGCTGGCATGAAAATGT 57.130 36.364 0.00 0.00 0.00 2.71
257 261 6.528537 TGTAGCTGGCATGAAAATGTAAAT 57.471 33.333 0.00 0.00 0.00 1.40
259 263 7.479980 TGTAGCTGGCATGAAAATGTAAATAC 58.520 34.615 0.00 0.00 0.00 1.89
263 267 4.048504 GGCATGAAAATGTAAATACCGCC 58.951 43.478 0.00 0.00 0.00 6.13
271 275 7.976734 TGAAAATGTAAATACCGCCCATAAAAG 59.023 33.333 0.00 0.00 0.00 2.27
312 316 7.931948 TGTTTTCAAGGTAGTTTTGTCCAAAAA 59.068 29.630 6.76 0.00 41.37 1.94
313 317 8.941977 GTTTTCAAGGTAGTTTTGTCCAAAAAT 58.058 29.630 9.92 9.92 41.37 1.82
317 321 9.757227 TCAAGGTAGTTTTGTCCAAAAATATTG 57.243 29.630 13.64 13.97 41.07 1.90
319 323 7.158697 AGGTAGTTTTGTCCAAAAATATTGCC 58.841 34.615 13.64 10.96 41.07 4.52
320 324 6.931840 GGTAGTTTTGTCCAAAAATATTGCCA 59.068 34.615 13.64 0.00 41.07 4.92
321 325 7.117667 GGTAGTTTTGTCCAAAAATATTGCCAG 59.882 37.037 13.64 0.00 41.07 4.85
322 326 6.825610 AGTTTTGTCCAAAAATATTGCCAGA 58.174 32.000 6.76 0.00 41.37 3.86
323 327 6.705825 AGTTTTGTCCAAAAATATTGCCAGAC 59.294 34.615 6.76 0.00 41.37 3.51
331 335 6.405286 CCAAAAATATTGCCAGACGGTGATAA 60.405 38.462 0.00 0.00 33.28 1.75
336 340 3.558931 TGCCAGACGGTGATAATCAAT 57.441 42.857 0.00 0.00 33.28 2.57
379 383 1.132721 AGCCCATACAGCCCTGATAGA 60.133 52.381 1.69 0.00 0.00 1.98
896 914 5.230182 TGCAACTACAGTAGTGAATGTCAG 58.770 41.667 14.25 0.00 39.39 3.51
997 1016 1.335324 CGCCCTGCAAAAAGAAGACAG 60.335 52.381 0.00 0.00 0.00 3.51
1086 1105 1.664321 CGGAGGTAGGTCCAAGGACG 61.664 65.000 12.77 0.00 45.41 4.79
1088 1107 1.341383 GGAGGTAGGTCCAAGGACGTA 60.341 57.143 15.54 15.54 45.41 3.57
1164 1200 0.685458 AACATCCAGGGCATTCAGGC 60.685 55.000 0.00 0.00 43.27 4.85
1206 1242 9.537852 TCTAACTGGTAGGAGTACTGAATTTTA 57.462 33.333 0.00 0.00 0.00 1.52
1217 1253 9.699703 GGAGTACTGAATTTTATATCTGTCCTC 57.300 37.037 0.00 0.00 33.04 3.71
1294 1330 0.307760 GCCAGTTTGGTGTCGACAAG 59.692 55.000 21.95 4.39 40.46 3.16
1315 1352 1.296715 GGAGACGGCTGTGGACATT 59.703 57.895 0.80 0.00 0.00 2.71
1316 1353 0.321653 GGAGACGGCTGTGGACATTT 60.322 55.000 0.80 0.00 0.00 2.32
1346 1383 3.788227 TTATGCTTTGACAGTCCCACT 57.212 42.857 0.00 0.00 0.00 4.00
1371 1408 3.675619 AACCGCGAGTATGGCACCC 62.676 63.158 8.23 0.00 41.24 4.61
1461 1498 4.096003 CCCACAGCGGTACAGGGG 62.096 72.222 9.63 0.00 35.83 4.79
1463 1500 2.047274 CACAGCGGTACAGGGGTG 60.047 66.667 0.00 1.85 37.65 4.61
1472 1509 2.159085 CGGTACAGGGGTGAGAAGATTC 60.159 54.545 0.00 0.00 0.00 2.52
1476 1513 2.169352 ACAGGGGTGAGAAGATTCGATG 59.831 50.000 0.00 0.00 0.00 3.84
1493 1530 2.413112 CGATGTCACGTTTGCTCTTGAT 59.587 45.455 0.00 0.00 0.00 2.57
1904 1941 2.568623 ATTTATCTGTCCGGGGATGC 57.431 50.000 0.00 0.00 0.00 3.91
1983 2020 2.172505 CAGGCCATACCCATTACACTCA 59.827 50.000 5.01 0.00 40.58 3.41
2021 2058 1.344458 CAGAAGCTACTGTGACGCTG 58.656 55.000 0.00 0.00 33.64 5.18
2033 2070 1.933853 GTGACGCTGTTGGGATATGAC 59.066 52.381 0.00 0.00 0.00 3.06
2036 2073 1.412710 ACGCTGTTGGGATATGACGAT 59.587 47.619 0.00 0.00 0.00 3.73
2160 2197 4.266739 CGTGATGCATGTTTCATTTCCATG 59.733 41.667 2.46 0.00 39.13 3.66
2201 2238 6.804295 TGCCATGTAAATATCGTTTTGTTGAC 59.196 34.615 0.00 0.00 0.00 3.18
2202 2239 6.252655 GCCATGTAAATATCGTTTTGTTGACC 59.747 38.462 0.00 0.00 0.00 4.02
2250 2289 5.423015 TGCCTGATGAAGTTTACTCATCTC 58.577 41.667 12.60 4.67 40.45 2.75
2413 2458 6.404074 GCATGTCTCCTGTTTATCTTTTGAGG 60.404 42.308 0.00 0.00 0.00 3.86
2422 2467 7.361713 CCTGTTTATCTTTTGAGGCAAACGATA 60.362 37.037 12.30 12.30 40.80 2.92
2456 2501 3.229276 TGTTGCATTTAATTCGCCCTG 57.771 42.857 0.00 0.00 0.00 4.45
2572 2644 2.787994 AGTTTCAGTCTCCAATGCTGG 58.212 47.619 0.00 0.00 45.08 4.85
2590 2667 5.126779 TGCTGGTTGTGTTGTTATCTAACA 58.873 37.500 0.00 0.00 43.80 2.41
2599 2676 8.144155 TGTGTTGTTATCTAACATTCGACAAA 57.856 30.769 3.76 0.00 44.72 2.83
2656 2733 1.141053 GGGTATCCAACGAGCCTGAAT 59.859 52.381 0.00 0.00 0.00 2.57
2682 2759 2.510594 GCATTTTCAGCCATGCGCG 61.511 57.895 0.00 0.00 44.76 6.86
2778 2859 0.880278 TTGACAACGCAGTGGCTCTC 60.880 55.000 0.00 0.00 45.00 3.20
2865 2961 7.505923 GGGTTTGAGCATAATATAGGAAAAGGT 59.494 37.037 0.00 0.00 0.00 3.50
3000 3106 1.852633 AGGGGAACAAATAGGCAAGC 58.147 50.000 0.00 0.00 0.00 4.01
3025 3131 4.655647 CCAGCCAGCACAGCACCT 62.656 66.667 0.00 0.00 0.00 4.00
3028 3134 2.032528 GCCAGCACAGCACCTGTA 59.967 61.111 0.00 0.00 43.43 2.74
3029 3135 1.600636 GCCAGCACAGCACCTGTAA 60.601 57.895 0.00 0.00 43.43 2.41
3030 3136 0.962356 GCCAGCACAGCACCTGTAAT 60.962 55.000 0.00 0.00 43.43 1.89
3031 3137 1.089920 CCAGCACAGCACCTGTAATC 58.910 55.000 0.00 0.00 43.43 1.75
3032 3138 1.611410 CCAGCACAGCACCTGTAATCA 60.611 52.381 0.00 0.00 43.43 2.57
3033 3139 2.153645 CAGCACAGCACCTGTAATCAA 58.846 47.619 0.00 0.00 43.43 2.57
3035 3141 2.554032 AGCACAGCACCTGTAATCAAAC 59.446 45.455 0.00 0.00 43.43 2.93
3036 3142 2.351738 GCACAGCACCTGTAATCAAACC 60.352 50.000 0.00 0.00 43.43 3.27
3037 3143 2.884012 CACAGCACCTGTAATCAAACCA 59.116 45.455 0.00 0.00 43.43 3.67
3038 3144 3.507233 CACAGCACCTGTAATCAAACCAT 59.493 43.478 0.00 0.00 43.43 3.55
3039 3145 4.699735 CACAGCACCTGTAATCAAACCATA 59.300 41.667 0.00 0.00 43.43 2.74
3040 3146 4.700213 ACAGCACCTGTAATCAAACCATAC 59.300 41.667 0.00 0.00 43.46 2.39
3041 3147 4.096382 CAGCACCTGTAATCAAACCATACC 59.904 45.833 0.00 0.00 0.00 2.73
3045 4439 6.386654 CACCTGTAATCAAACCATACCAAAC 58.613 40.000 0.00 0.00 0.00 2.93
3048 4442 6.154363 CCTGTAATCAAACCATACCAAACCAT 59.846 38.462 0.00 0.00 0.00 3.55
3184 4584 5.682234 TTCTGAACCTGCTCAATGATCTA 57.318 39.130 0.00 0.00 0.00 1.98
3320 5015 7.889589 TGTAGACATACATTTGTTGTCTGAG 57.110 36.000 23.61 0.00 41.63 3.35
3347 5042 1.753930 ATAAAAGGGTTAACGCCGGG 58.246 50.000 18.16 0.00 0.00 5.73
3370 5576 6.374333 GGGCACTAACTACTGATTTCAATTCA 59.626 38.462 0.00 0.00 0.00 2.57
3383 5589 9.472361 CTGATTTCAATTCAATCAAAGAGTGTT 57.528 29.630 9.75 0.00 39.59 3.32
3439 5647 2.690497 TCAGGCACATCAGAGCTAGTAC 59.310 50.000 0.00 0.00 0.00 2.73
3477 5685 0.098376 GAAGAGAAAGCATGCAGGCG 59.902 55.000 21.98 0.00 39.27 5.52
3486 5694 1.878088 AGCATGCAGGCGATAAATCAG 59.122 47.619 21.98 0.00 39.27 2.90
3487 5695 1.875514 GCATGCAGGCGATAAATCAGA 59.124 47.619 14.21 0.00 0.00 3.27
3490 5698 2.826428 TGCAGGCGATAAATCAGAGTC 58.174 47.619 0.00 0.00 0.00 3.36
3514 5722 5.842907 TGAATCAGCTAATAGCATGTACGT 58.157 37.500 15.28 0.00 45.56 3.57
3568 5783 6.755206 AGACAAGCTGTAAAAATTAAACCCC 58.245 36.000 0.00 0.00 0.00 4.95
3584 5799 5.738619 AAACCCCAAAAATACACCATCTC 57.261 39.130 0.00 0.00 0.00 2.75
3585 5800 4.396357 ACCCCAAAAATACACCATCTCA 57.604 40.909 0.00 0.00 0.00 3.27
3586 5801 4.746466 ACCCCAAAAATACACCATCTCAA 58.254 39.130 0.00 0.00 0.00 3.02
3615 5830 0.941542 CAACGACCGGTCACAAACAT 59.058 50.000 32.80 8.47 0.00 2.71
3616 5831 1.070175 CAACGACCGGTCACAAACATC 60.070 52.381 32.80 4.66 0.00 3.06
3632 5847 4.608170 AACATCCCAACTAATCCACCAT 57.392 40.909 0.00 0.00 0.00 3.55
3637 5852 3.525609 TCCCAACTAATCCACCATTAGCA 59.474 43.478 1.95 0.00 45.79 3.49
3658 5873 3.345508 TGAGATGCTGAGCACAATCTT 57.654 42.857 10.33 0.00 43.04 2.40
3662 5877 5.884232 TGAGATGCTGAGCACAATCTTAATT 59.116 36.000 10.33 0.00 43.04 1.40
3664 5879 6.793349 AGATGCTGAGCACAATCTTAATTTC 58.207 36.000 10.33 0.00 43.04 2.17
3704 5920 4.271533 TCGTCAGTCAACAACAATAACCAC 59.728 41.667 0.00 0.00 0.00 4.16
3713 5929 4.335416 ACAACAATAACCACCATCTGAGG 58.665 43.478 0.00 0.00 0.00 3.86
3719 5935 0.833287 ACCACCATCTGAGGAATCCG 59.167 55.000 0.00 0.00 0.00 4.18
3744 5960 6.428159 GGGGAAATGCTTGATGTACACTATAG 59.572 42.308 0.00 0.00 0.00 1.31
3747 5963 8.768955 GGAAATGCTTGATGTACACTATAGAAG 58.231 37.037 6.78 1.02 0.00 2.85
3748 5964 9.319143 GAAATGCTTGATGTACACTATAGAAGT 57.681 33.333 6.78 7.25 39.81 3.01
3750 5966 8.879342 ATGCTTGATGTACACTATAGAAGTTC 57.121 34.615 6.78 0.00 35.76 3.01
3751 5967 7.265673 TGCTTGATGTACACTATAGAAGTTCC 58.734 38.462 6.78 0.76 35.76 3.62
3752 5968 6.702282 GCTTGATGTACACTATAGAAGTTCCC 59.298 42.308 6.78 0.00 35.76 3.97
3753 5969 7.632898 GCTTGATGTACACTATAGAAGTTCCCA 60.633 40.741 6.78 3.72 35.76 4.37
3757 5973 7.108841 TGTACACTATAGAAGTTCCCATGTC 57.891 40.000 6.78 0.00 35.76 3.06
3758 5974 6.895756 TGTACACTATAGAAGTTCCCATGTCT 59.104 38.462 6.78 0.00 35.76 3.41
3759 5975 8.057011 TGTACACTATAGAAGTTCCCATGTCTA 58.943 37.037 6.78 0.00 35.76 2.59
3760 5976 9.080097 GTACACTATAGAAGTTCCCATGTCTAT 57.920 37.037 6.78 6.53 35.76 1.98
3764 5980 8.588290 CTATAGAAGTTCCCATGTCTATAGCT 57.412 38.462 16.65 0.00 42.41 3.32
3765 5981 5.543507 AGAAGTTCCCATGTCTATAGCTG 57.456 43.478 0.00 0.00 0.00 4.24
3766 5982 5.211973 AGAAGTTCCCATGTCTATAGCTGA 58.788 41.667 0.00 0.00 0.00 4.26
3767 5983 5.843421 AGAAGTTCCCATGTCTATAGCTGAT 59.157 40.000 0.00 0.00 0.00 2.90
3768 5984 5.480642 AGTTCCCATGTCTATAGCTGATG 57.519 43.478 0.00 0.00 0.00 3.07
3769 5985 4.904251 AGTTCCCATGTCTATAGCTGATGT 59.096 41.667 0.00 0.00 0.00 3.06
3770 5986 6.077993 AGTTCCCATGTCTATAGCTGATGTA 58.922 40.000 0.00 0.00 0.00 2.29
3771 5987 6.728164 AGTTCCCATGTCTATAGCTGATGTAT 59.272 38.462 0.00 0.00 0.00 2.29
3772 5988 7.895962 AGTTCCCATGTCTATAGCTGATGTATA 59.104 37.037 0.00 0.00 0.00 1.47
3773 5989 8.700051 GTTCCCATGTCTATAGCTGATGTATAT 58.300 37.037 0.00 0.00 0.00 0.86
3774 5990 8.470657 TCCCATGTCTATAGCTGATGTATATC 57.529 38.462 0.00 0.00 0.00 1.63
3775 5991 8.061304 TCCCATGTCTATAGCTGATGTATATCA 58.939 37.037 0.00 1.91 40.92 2.15
3776 5992 8.140628 CCCATGTCTATAGCTGATGTATATCAC 58.859 40.741 0.00 0.00 38.37 3.06
3777 5993 8.689972 CCATGTCTATAGCTGATGTATATCACA 58.310 37.037 0.00 0.00 38.37 3.58
3778 5994 9.733219 CATGTCTATAGCTGATGTATATCACAG 57.267 37.037 0.00 0.00 41.51 3.66
3779 5995 8.286191 TGTCTATAGCTGATGTATATCACAGG 57.714 38.462 0.00 0.00 41.51 4.00
3821 6037 1.271379 CCGAGTTCCCATGTCTTTGGT 60.271 52.381 0.00 0.00 34.77 3.67
3878 6094 7.285788 CAACAAATTCAAATGCTTAGCAAGAC 58.714 34.615 12.08 0.00 43.62 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.135382 AGAGAAACTCTAGCACATACCTAAAA 57.865 34.615 0.00 0.00 39.28 1.52
34 35 6.183360 GCTTAGAGAAACTCTAGCACATACCT 60.183 42.308 16.90 0.00 42.92 3.08
87 90 3.112075 CTGCGATGCAACGTCGGT 61.112 61.111 17.99 0.00 38.41 4.69
94 97 3.776849 CGACGTGCTGCGATGCAA 61.777 61.111 0.00 0.00 45.12 4.08
120 123 0.110823 CAAACTAGACGTGCAACCGC 60.111 55.000 0.00 0.00 39.24 5.68
131 134 7.665559 AGCACAATCAAAGATAACCAAACTAGA 59.334 33.333 0.00 0.00 0.00 2.43
136 139 5.695816 GCAAGCACAATCAAAGATAACCAAA 59.304 36.000 0.00 0.00 0.00 3.28
142 145 4.252878 TCGAGCAAGCACAATCAAAGATA 58.747 39.130 0.00 0.00 0.00 1.98
144 147 2.481568 CTCGAGCAAGCACAATCAAAGA 59.518 45.455 0.00 0.00 0.00 2.52
218 222 4.572389 CAGCTACAAAAACTCTGTGACTGT 59.428 41.667 0.00 0.00 31.52 3.55
219 223 4.024556 CCAGCTACAAAAACTCTGTGACTG 60.025 45.833 0.00 0.00 33.87 3.51
220 224 4.130118 CCAGCTACAAAAACTCTGTGACT 58.870 43.478 0.00 0.00 0.00 3.41
221 225 3.304057 GCCAGCTACAAAAACTCTGTGAC 60.304 47.826 0.00 0.00 0.00 3.67
222 226 2.878406 GCCAGCTACAAAAACTCTGTGA 59.122 45.455 0.00 0.00 0.00 3.58
223 227 2.618241 TGCCAGCTACAAAAACTCTGTG 59.382 45.455 0.00 0.00 0.00 3.66
224 228 2.930950 TGCCAGCTACAAAAACTCTGT 58.069 42.857 0.00 0.00 0.00 3.41
225 229 3.503363 TCATGCCAGCTACAAAAACTCTG 59.497 43.478 0.00 0.00 0.00 3.35
226 230 3.754965 TCATGCCAGCTACAAAAACTCT 58.245 40.909 0.00 0.00 0.00 3.24
227 231 4.503741 TTCATGCCAGCTACAAAAACTC 57.496 40.909 0.00 0.00 0.00 3.01
228 232 4.935352 TTTCATGCCAGCTACAAAAACT 57.065 36.364 0.00 0.00 0.00 2.66
229 233 5.466393 ACATTTTCATGCCAGCTACAAAAAC 59.534 36.000 0.00 0.00 33.05 2.43
230 234 5.609423 ACATTTTCATGCCAGCTACAAAAA 58.391 33.333 0.00 0.00 33.05 1.94
231 235 5.212532 ACATTTTCATGCCAGCTACAAAA 57.787 34.783 0.00 0.00 33.05 2.44
232 236 4.870123 ACATTTTCATGCCAGCTACAAA 57.130 36.364 0.00 0.00 33.05 2.83
233 237 5.973899 TTACATTTTCATGCCAGCTACAA 57.026 34.783 0.00 0.00 33.05 2.41
234 238 5.973899 TTTACATTTTCATGCCAGCTACA 57.026 34.783 0.00 0.00 33.05 2.74
235 239 6.918022 GGTATTTACATTTTCATGCCAGCTAC 59.082 38.462 0.00 0.00 33.05 3.58
236 240 6.238621 CGGTATTTACATTTTCATGCCAGCTA 60.239 38.462 0.00 0.00 33.05 3.32
237 241 5.450412 CGGTATTTACATTTTCATGCCAGCT 60.450 40.000 0.00 0.00 33.05 4.24
238 242 4.739716 CGGTATTTACATTTTCATGCCAGC 59.260 41.667 0.00 0.00 33.05 4.85
239 243 4.739716 GCGGTATTTACATTTTCATGCCAG 59.260 41.667 0.00 0.00 33.05 4.85
240 244 4.440802 GGCGGTATTTACATTTTCATGCCA 60.441 41.667 0.00 0.00 37.54 4.92
241 245 4.048504 GGCGGTATTTACATTTTCATGCC 58.951 43.478 0.00 0.00 33.05 4.40
253 257 7.794041 TCTTCTACTTTTATGGGCGGTATTTA 58.206 34.615 0.00 0.00 0.00 1.40
257 261 4.957954 TCTCTTCTACTTTTATGGGCGGTA 59.042 41.667 0.00 0.00 0.00 4.02
259 263 4.099573 TCTCTCTTCTACTTTTATGGGCGG 59.900 45.833 0.00 0.00 0.00 6.13
263 267 7.560368 ACATGGTCTCTCTTCTACTTTTATGG 58.440 38.462 0.00 0.00 0.00 2.74
271 275 6.370166 CCTTGAAAACATGGTCTCTCTTCTAC 59.630 42.308 0.00 0.00 0.00 2.59
312 316 5.227569 TGATTATCACCGTCTGGCAATAT 57.772 39.130 0.00 0.00 39.70 1.28
313 317 4.681074 TGATTATCACCGTCTGGCAATA 57.319 40.909 0.00 0.00 39.70 1.90
314 318 3.558931 TGATTATCACCGTCTGGCAAT 57.441 42.857 0.00 0.00 39.70 3.56
316 320 3.134623 AGATTGATTATCACCGTCTGGCA 59.865 43.478 0.00 0.00 39.70 4.92
317 321 3.733337 AGATTGATTATCACCGTCTGGC 58.267 45.455 0.00 0.00 39.70 4.85
319 323 7.573916 GTGATAGATTGATTATCACCGTCTG 57.426 40.000 12.21 0.00 45.94 3.51
331 335 9.981114 TGATTTACATACACGTGATAGATTGAT 57.019 29.630 25.01 6.90 0.00 2.57
336 340 7.223971 GGCTTTGATTTACATACACGTGATAGA 59.776 37.037 25.01 4.55 0.00 1.98
509 514 3.223435 CAGAAGCCCTAGACCTATTCGA 58.777 50.000 0.00 0.00 0.00 3.71
510 515 2.288518 GCAGAAGCCCTAGACCTATTCG 60.289 54.545 0.00 0.00 33.58 3.34
511 516 2.969262 AGCAGAAGCCCTAGACCTATTC 59.031 50.000 0.00 0.00 43.56 1.75
650 656 0.031616 CTCCAGGGAGGCTAGGAAGT 60.032 60.000 7.48 0.00 38.51 3.01
686 692 0.672401 CCGACCAGTTTGCATACGGT 60.672 55.000 18.22 18.22 35.21 4.83
729 739 1.901085 CCTTCCCTGTCTTCGGAGG 59.099 63.158 0.00 0.00 0.00 4.30
838 850 3.097614 AGTCGCCTGTAATCTTACCTGT 58.902 45.455 0.00 0.00 32.72 4.00
861 873 5.079643 ACTGTAGTTGCATCCCAAAATTCT 58.920 37.500 0.00 0.00 34.68 2.40
997 1016 2.474816 GTCCGAGGACAACATCATAGC 58.525 52.381 16.75 0.00 44.02 2.97
1142 1177 2.449464 CTGAATGCCCTGGATGTTTGA 58.551 47.619 0.00 0.00 0.00 2.69
1206 1242 3.645053 ACCCTGGATGAGGACAGATAT 57.355 47.619 0.00 0.00 46.33 1.63
1217 1253 4.654915 TGTCATGCATAATACCCTGGATG 58.345 43.478 0.00 0.00 41.10 3.51
1294 1330 3.695606 TCCACAGCCGTCTCCAGC 61.696 66.667 0.00 0.00 0.00 4.85
1315 1352 7.669427 ACTGTCAAAGCATAAATTGGAATGAA 58.331 30.769 0.00 0.00 0.00 2.57
1316 1353 7.230849 ACTGTCAAAGCATAAATTGGAATGA 57.769 32.000 0.00 0.00 0.00 2.57
1346 1383 1.611977 CCATACTCGCGGTTCAGGATA 59.388 52.381 6.13 0.00 0.00 2.59
1371 1408 1.078637 TGCTGCTGCTCCTGCTAAG 60.079 57.895 17.00 0.00 40.48 2.18
1461 1498 3.502920 ACGTGACATCGAATCTTCTCAC 58.497 45.455 0.00 0.00 34.70 3.51
1463 1500 4.722346 GCAAACGTGACATCGAATCTTCTC 60.722 45.833 0.00 0.00 34.70 2.87
1472 1509 1.792367 TCAAGAGCAAACGTGACATCG 59.208 47.619 0.00 0.00 0.00 3.84
1476 1513 1.722751 CGCATCAAGAGCAAACGTGAC 60.723 52.381 0.00 0.00 32.07 3.67
1493 1530 3.529341 ATGTTCCGTGTGCCTCGCA 62.529 57.895 0.00 0.00 35.60 5.10
1588 1625 1.129058 ATATGACCTCACGGAACCCC 58.871 55.000 0.00 0.00 0.00 4.95
1904 1941 2.062971 ATTCCATAACCTGCAGCTGG 57.937 50.000 17.12 16.57 0.00 4.85
1983 2020 3.087031 CTGTTGGCTTCATGGATTCACT 58.913 45.455 0.00 0.00 0.00 3.41
2021 2058 6.085555 TCAAGAGTATCGTCATATCCCAAC 57.914 41.667 0.00 0.00 42.67 3.77
2033 2070 5.289675 GGTGAAGACATGTTCAAGAGTATCG 59.710 44.000 0.00 0.00 38.17 2.92
2036 2073 4.279922 TCGGTGAAGACATGTTCAAGAGTA 59.720 41.667 0.00 0.00 38.17 2.59
2102 2139 1.164411 CCTCGGTGTTTATGCAAGCA 58.836 50.000 0.00 0.00 0.00 3.91
2103 2140 1.165270 ACCTCGGTGTTTATGCAAGC 58.835 50.000 0.00 0.00 0.00 4.01
2160 2197 6.709018 ACATGGCATACCCTTTTTACATAC 57.291 37.500 0.00 0.00 33.59 2.39
2201 2238 2.899303 AAATCCAACCACCTACAGGG 57.101 50.000 0.00 0.00 40.27 4.45
2202 2239 3.761897 TGAAAATCCAACCACCTACAGG 58.238 45.455 0.00 0.00 42.17 4.00
2250 2289 6.231211 ACTTACAGTCACCTCCAGTTTTATG 58.769 40.000 0.00 0.00 0.00 1.90
2280 2319 4.568380 CCATTTCTGATTCTTGAGTCCCCA 60.568 45.833 0.00 0.00 0.00 4.96
2413 2458 3.866496 GCACTAAGCAGATATCGTTTGC 58.134 45.455 7.22 7.22 44.79 3.68
2446 2491 0.827507 AGTGCAAACCAGGGCGAATT 60.828 50.000 0.00 0.00 0.00 2.17
2470 2515 8.696374 AGTCTAATCTAGTATAAGCAGTTGCAA 58.304 33.333 6.90 0.00 45.16 4.08
2545 2617 5.934625 GCATTGGAGACTGAAACTTAAGAGA 59.065 40.000 10.09 0.00 0.00 3.10
2590 2667 8.883731 CATCTGAAAGTATAAGGTTTGTCGAAT 58.116 33.333 0.00 0.00 33.76 3.34
2599 2676 6.116126 GTGGAAGCATCTGAAAGTATAAGGT 58.884 40.000 0.00 0.00 33.76 3.50
2607 2684 3.504906 ACACATGTGGAAGCATCTGAAAG 59.495 43.478 28.64 0.00 34.19 2.62
2682 2759 0.671781 ACTGCTCAAGATGACGGTGC 60.672 55.000 0.00 0.00 0.00 5.01
2778 2859 1.541233 GGTTCTATGGACATCCGCCTG 60.541 57.143 0.00 0.00 39.43 4.85
3013 3119 1.812235 TGATTACAGGTGCTGTGCTG 58.188 50.000 0.00 0.00 45.01 4.41
3014 3120 2.554032 GTTTGATTACAGGTGCTGTGCT 59.446 45.455 0.00 0.00 45.01 4.40
3015 3121 2.351738 GGTTTGATTACAGGTGCTGTGC 60.352 50.000 0.00 0.00 45.01 4.57
3016 3122 2.884012 TGGTTTGATTACAGGTGCTGTG 59.116 45.455 0.00 0.00 45.01 3.66
3018 3124 4.096382 GGTATGGTTTGATTACAGGTGCTG 59.904 45.833 0.00 0.00 37.52 4.41
3019 3125 4.263727 TGGTATGGTTTGATTACAGGTGCT 60.264 41.667 0.00 0.00 0.00 4.40
3020 3126 4.013728 TGGTATGGTTTGATTACAGGTGC 58.986 43.478 0.00 0.00 0.00 5.01
3021 3127 6.386654 GTTTGGTATGGTTTGATTACAGGTG 58.613 40.000 0.00 0.00 0.00 4.00
3022 3128 5.479027 GGTTTGGTATGGTTTGATTACAGGT 59.521 40.000 0.00 0.00 0.00 4.00
3023 3129 5.478679 TGGTTTGGTATGGTTTGATTACAGG 59.521 40.000 0.00 0.00 0.00 4.00
3024 3130 6.582677 TGGTTTGGTATGGTTTGATTACAG 57.417 37.500 0.00 0.00 0.00 2.74
3025 3131 7.122948 GGTATGGTTTGGTATGGTTTGATTACA 59.877 37.037 0.00 0.00 0.00 2.41
3028 3134 6.019748 TGGTATGGTTTGGTATGGTTTGATT 58.980 36.000 0.00 0.00 0.00 2.57
3029 3135 5.584913 TGGTATGGTTTGGTATGGTTTGAT 58.415 37.500 0.00 0.00 0.00 2.57
3030 3136 4.999310 TGGTATGGTTTGGTATGGTTTGA 58.001 39.130 0.00 0.00 0.00 2.69
3031 3137 5.730296 TTGGTATGGTTTGGTATGGTTTG 57.270 39.130 0.00 0.00 0.00 2.93
3032 3138 5.012251 GGTTTGGTATGGTTTGGTATGGTTT 59.988 40.000 0.00 0.00 0.00 3.27
3033 3139 4.528987 GGTTTGGTATGGTTTGGTATGGTT 59.471 41.667 0.00 0.00 0.00 3.67
3035 3141 4.090090 TGGTTTGGTATGGTTTGGTATGG 58.910 43.478 0.00 0.00 0.00 2.74
3036 3142 5.245075 AGTTGGTTTGGTATGGTTTGGTATG 59.755 40.000 0.00 0.00 0.00 2.39
3037 3143 5.399113 AGTTGGTTTGGTATGGTTTGGTAT 58.601 37.500 0.00 0.00 0.00 2.73
3038 3144 4.805744 AGTTGGTTTGGTATGGTTTGGTA 58.194 39.130 0.00 0.00 0.00 3.25
3039 3145 3.648739 AGTTGGTTTGGTATGGTTTGGT 58.351 40.909 0.00 0.00 0.00 3.67
3040 3146 4.100189 TGAAGTTGGTTTGGTATGGTTTGG 59.900 41.667 0.00 0.00 0.00 3.28
3041 3147 5.269505 TGAAGTTGGTTTGGTATGGTTTG 57.730 39.130 0.00 0.00 0.00 2.93
3045 4439 4.690280 GCAAATGAAGTTGGTTTGGTATGG 59.310 41.667 10.09 0.00 34.34 2.74
3048 4442 5.344743 TTGCAAATGAAGTTGGTTTGGTA 57.655 34.783 0.00 0.00 34.34 3.25
3184 4584 4.337555 GCTCATTGCAAATCCATCTAGTGT 59.662 41.667 1.71 0.00 42.31 3.55
3308 5003 3.924114 TTCCAGGTCTCAGACAACAAA 57.076 42.857 7.24 0.00 33.68 2.83
3320 5015 4.142534 GCGTTAACCCTTTTATTCCAGGTC 60.143 45.833 0.00 0.00 0.00 3.85
3347 5042 9.495754 GATTGAATTGAAATCAGTAGTTAGTGC 57.504 33.333 5.84 0.00 34.73 4.40
3375 5581 6.327626 AGGGCATCATATGTACTAACACTCTT 59.672 38.462 1.90 0.00 38.78 2.85
3380 5586 6.557253 AGGTTAGGGCATCATATGTACTAACA 59.443 38.462 22.42 2.05 44.22 2.41
3383 5589 6.376299 CGTAGGTTAGGGCATCATATGTACTA 59.624 42.308 1.90 0.00 0.00 1.82
3439 5647 5.496556 TCTTCTCTGTCTAGACTTGAGAGG 58.503 45.833 29.90 29.90 40.06 3.69
3477 5685 9.709495 ATTAGCTGATTCAGACTCTGATTTATC 57.291 33.333 17.87 10.16 40.39 1.75
3486 5694 6.222389 ACATGCTATTAGCTGATTCAGACTC 58.778 40.000 17.87 0.00 42.97 3.36
3487 5695 6.172136 ACATGCTATTAGCTGATTCAGACT 57.828 37.500 17.87 14.93 42.97 3.24
3490 5698 5.923114 ACGTACATGCTATTAGCTGATTCAG 59.077 40.000 16.29 9.40 42.97 3.02
3514 5722 6.801539 ATCTGTTTCGCTGAGATTTTGTTA 57.198 33.333 0.00 0.00 0.00 2.41
3568 5783 7.490725 TGTTGTTGTTGAGATGGTGTATTTTTG 59.509 33.333 0.00 0.00 0.00 2.44
3584 5799 1.908247 CGGTCGTTGTTGTTGTTGTTG 59.092 47.619 0.00 0.00 0.00 3.33
3585 5800 1.135632 CCGGTCGTTGTTGTTGTTGTT 60.136 47.619 0.00 0.00 0.00 2.83
3586 5801 0.448593 CCGGTCGTTGTTGTTGTTGT 59.551 50.000 0.00 0.00 0.00 3.32
3615 5830 3.525609 TGCTAATGGTGGATTAGTTGGGA 59.474 43.478 0.00 0.00 43.94 4.37
3616 5831 3.897239 TGCTAATGGTGGATTAGTTGGG 58.103 45.455 0.00 0.00 43.94 4.12
3637 5852 3.562343 AGATTGTGCTCAGCATCTCAT 57.438 42.857 0.54 0.00 41.91 2.90
3662 5877 9.128404 ACTGACGATATGTACTGTTTATAGGAA 57.872 33.333 0.00 0.00 0.00 3.36
3664 5879 8.565416 TGACTGACGATATGTACTGTTTATAGG 58.435 37.037 0.00 0.00 0.00 2.57
3671 5887 5.638596 TGTTGACTGACGATATGTACTGT 57.361 39.130 0.00 0.00 0.00 3.55
3679 5895 6.146510 GTGGTTATTGTTGTTGACTGACGATA 59.853 38.462 0.00 0.00 0.00 2.92
3681 5897 4.271533 GTGGTTATTGTTGTTGACTGACGA 59.728 41.667 0.00 0.00 0.00 4.20
3684 5900 4.527944 TGGTGGTTATTGTTGTTGACTGA 58.472 39.130 0.00 0.00 0.00 3.41
3704 5920 0.764369 TCCCCGGATTCCTCAGATGG 60.764 60.000 0.73 0.00 0.00 3.51
3713 5929 1.762708 TCAAGCATTTCCCCGGATTC 58.237 50.000 0.73 0.00 0.00 2.52
3719 5935 3.356290 AGTGTACATCAAGCATTTCCCC 58.644 45.455 0.00 0.00 0.00 4.81
3744 5960 5.537300 TCAGCTATAGACATGGGAACTTC 57.463 43.478 3.21 0.00 0.00 3.01
3747 5963 5.220710 ACATCAGCTATAGACATGGGAAC 57.779 43.478 3.21 0.00 0.00 3.62
3748 5964 8.844865 ATATACATCAGCTATAGACATGGGAA 57.155 34.615 3.21 0.00 0.00 3.97
3750 5966 8.140628 GTGATATACATCAGCTATAGACATGGG 58.859 40.741 3.21 0.00 41.87 4.00
3751 5967 8.689972 TGTGATATACATCAGCTATAGACATGG 58.310 37.037 3.21 0.00 41.87 3.66
3752 5968 9.733219 CTGTGATATACATCAGCTATAGACATG 57.267 37.037 3.21 4.38 41.87 3.21
3753 5969 8.911965 CCTGTGATATACATCAGCTATAGACAT 58.088 37.037 3.21 0.00 41.87 3.06
3757 5973 9.129532 TGATCCTGTGATATACATCAGCTATAG 57.870 37.037 0.00 0.00 41.87 1.31
3758 5974 9.652114 ATGATCCTGTGATATACATCAGCTATA 57.348 33.333 0.00 0.00 41.87 1.31
3759 5975 7.968014 TGATCCTGTGATATACATCAGCTAT 57.032 36.000 0.00 0.00 41.87 2.97
3760 5976 7.616935 TGATGATCCTGTGATATACATCAGCTA 59.383 37.037 0.00 0.00 41.87 3.32
3761 5977 6.439692 TGATGATCCTGTGATATACATCAGCT 59.560 38.462 0.00 0.00 41.87 4.24
3762 5978 6.637657 TGATGATCCTGTGATATACATCAGC 58.362 40.000 0.00 0.00 41.87 4.26
3763 5979 8.475639 TGATGATGATCCTGTGATATACATCAG 58.524 37.037 0.00 0.00 41.87 2.90
3764 5980 8.370266 TGATGATGATCCTGTGATATACATCA 57.630 34.615 0.00 0.00 40.81 3.07
3765 5981 9.478768 GATGATGATGATCCTGTGATATACATC 57.521 37.037 0.00 0.00 38.92 3.06
3766 5982 8.989131 TGATGATGATGATCCTGTGATATACAT 58.011 33.333 0.00 0.00 38.92 2.29
3767 5983 8.370266 TGATGATGATGATCCTGTGATATACA 57.630 34.615 0.00 0.00 37.78 2.29
3768 5984 9.478768 GATGATGATGATGATCCTGTGATATAC 57.521 37.037 0.00 0.00 0.00 1.47
3769 5985 9.435570 AGATGATGATGATGATCCTGTGATATA 57.564 33.333 0.00 0.00 0.00 0.86
3770 5986 8.325477 AGATGATGATGATGATCCTGTGATAT 57.675 34.615 0.00 0.00 0.00 1.63
3771 5987 7.147707 GGAGATGATGATGATGATCCTGTGATA 60.148 40.741 0.00 0.00 0.00 2.15
3772 5988 6.352308 GGAGATGATGATGATGATCCTGTGAT 60.352 42.308 0.00 0.00 0.00 3.06
3773 5989 5.046520 GGAGATGATGATGATGATCCTGTGA 60.047 44.000 0.00 0.00 0.00 3.58
3774 5990 5.046231 AGGAGATGATGATGATGATCCTGTG 60.046 44.000 0.00 0.00 34.68 3.66
3775 5991 5.095097 AGGAGATGATGATGATGATCCTGT 58.905 41.667 0.00 0.00 34.68 4.00
3776 5992 5.685520 AGGAGATGATGATGATGATCCTG 57.314 43.478 0.00 0.00 34.68 3.86
3777 5993 5.190132 GGAAGGAGATGATGATGATGATCCT 59.810 44.000 0.00 0.00 37.53 3.24
3778 5994 5.430007 GGAAGGAGATGATGATGATGATCC 58.570 45.833 0.00 0.00 0.00 3.36
3779 5995 5.430007 GGGAAGGAGATGATGATGATGATC 58.570 45.833 0.00 0.00 0.00 2.92
3821 6037 1.893137 TCTTCTCAGCTACTTCCGCAA 59.107 47.619 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.