Multiple sequence alignment - TraesCS3B01G420300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G420300 | chr3B | 100.000 | 2498 | 0 | 0 | 1 | 2498 | 657344614 | 657342117 | 0.000000e+00 | 4614.0 |
1 | TraesCS3B01G420300 | chr3D | 89.981 | 1577 | 86 | 25 | 421 | 1949 | 497370021 | 497368469 | 0.000000e+00 | 1971.0 |
2 | TraesCS3B01G420300 | chr3D | 92.912 | 522 | 34 | 2 | 1980 | 2498 | 497368467 | 497367946 | 0.000000e+00 | 756.0 |
3 | TraesCS3B01G420300 | chr3D | 88.889 | 243 | 23 | 2 | 2 | 240 | 497370255 | 497370013 | 1.880000e-76 | 296.0 |
4 | TraesCS3B01G420300 | chr3D | 76.285 | 506 | 69 | 34 | 1999 | 2496 | 523657761 | 523657299 | 3.230000e-54 | 222.0 |
5 | TraesCS3B01G420300 | chr3D | 88.235 | 187 | 16 | 2 | 920 | 1100 | 499966934 | 499966748 | 4.180000e-53 | 219.0 |
6 | TraesCS3B01G420300 | chr3D | 77.170 | 311 | 49 | 18 | 2205 | 2496 | 135220904 | 135220597 | 7.150000e-36 | 161.0 |
7 | TraesCS3B01G420300 | chr3A | 88.372 | 1204 | 55 | 28 | 676 | 1826 | 637292524 | 637293695 | 0.000000e+00 | 1369.0 |
8 | TraesCS3B01G420300 | chr3A | 88.485 | 165 | 6 | 3 | 527 | 678 | 637292160 | 637292324 | 1.180000e-43 | 187.0 |
9 | TraesCS3B01G420300 | chr3A | 81.065 | 169 | 24 | 5 | 2329 | 2493 | 150074013 | 150073849 | 7.250000e-26 | 128.0 |
10 | TraesCS3B01G420300 | chr6B | 97.283 | 184 | 4 | 1 | 241 | 423 | 362373709 | 362373526 | 6.710000e-81 | 311.0 |
11 | TraesCS3B01G420300 | chr6B | 96.685 | 181 | 5 | 1 | 241 | 420 | 368303263 | 368303443 | 1.450000e-77 | 300.0 |
12 | TraesCS3B01G420300 | chr6B | 92.611 | 203 | 8 | 6 | 230 | 429 | 498537597 | 498537795 | 4.070000e-73 | 285.0 |
13 | TraesCS3B01G420300 | chr4A | 97.238 | 181 | 4 | 1 | 241 | 420 | 577102900 | 577103080 | 3.120000e-79 | 305.0 |
14 | TraesCS3B01G420300 | chr7B | 96.703 | 182 | 3 | 3 | 240 | 420 | 540244008 | 540243829 | 1.450000e-77 | 300.0 |
15 | TraesCS3B01G420300 | chr7B | 86.567 | 134 | 15 | 1 | 2363 | 2496 | 566314646 | 566314516 | 7.200000e-31 | 145.0 |
16 | TraesCS3B01G420300 | chr7B | 85.271 | 129 | 19 | 0 | 2368 | 2496 | 166964702 | 166964830 | 1.560000e-27 | 134.0 |
17 | TraesCS3B01G420300 | chr2A | 96.685 | 181 | 5 | 1 | 241 | 420 | 16502590 | 16502410 | 1.450000e-77 | 300.0 |
18 | TraesCS3B01G420300 | chr2A | 78.761 | 339 | 58 | 10 | 1960 | 2289 | 774805149 | 774804816 | 5.410000e-52 | 215.0 |
19 | TraesCS3B01G420300 | chr5D | 95.580 | 181 | 7 | 1 | 241 | 420 | 531422086 | 531421906 | 3.140000e-74 | 289.0 |
20 | TraesCS3B01G420300 | chr5D | 75.460 | 163 | 36 | 3 | 1883 | 2042 | 564094114 | 564093953 | 2.660000e-10 | 76.8 |
21 | TraesCS3B01G420300 | chr2B | 94.086 | 186 | 7 | 4 | 237 | 420 | 40529984 | 40529801 | 1.890000e-71 | 279.0 |
22 | TraesCS3B01G420300 | chr2B | 77.947 | 263 | 43 | 8 | 2227 | 2484 | 5653206 | 5653458 | 1.550000e-32 | 150.0 |
23 | TraesCS3B01G420300 | chr4B | 93.956 | 182 | 6 | 4 | 241 | 420 | 568735604 | 568735426 | 1.140000e-68 | 270.0 |
24 | TraesCS3B01G420300 | chr4B | 76.426 | 526 | 97 | 22 | 1977 | 2496 | 660133291 | 660132787 | 2.460000e-65 | 259.0 |
25 | TraesCS3B01G420300 | chr5B | 88.496 | 113 | 13 | 0 | 2384 | 2496 | 275005493 | 275005381 | 1.200000e-28 | 137.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G420300 | chr3B | 657342117 | 657344614 | 2497 | True | 4614.000000 | 4614 | 100.0000 | 1 | 2498 | 1 | chr3B.!!$R1 | 2497 |
1 | TraesCS3B01G420300 | chr3D | 497367946 | 497370255 | 2309 | True | 1007.666667 | 1971 | 90.5940 | 2 | 2498 | 3 | chr3D.!!$R4 | 2496 |
2 | TraesCS3B01G420300 | chr3A | 637292160 | 637293695 | 1535 | False | 778.000000 | 1369 | 88.4285 | 527 | 1826 | 2 | chr3A.!!$F1 | 1299 |
3 | TraesCS3B01G420300 | chr4B | 660132787 | 660133291 | 504 | True | 259.000000 | 259 | 76.4260 | 1977 | 2496 | 1 | chr4B.!!$R2 | 519 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
292 | 297 | 0.179045 | AAGCTAACGGGCAGGCATAG | 60.179 | 55.0 | 0.0 | 0.0 | 34.17 | 2.23 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1921 | 2233 | 0.034756 | TCCAATCTGTGTCACGGGTG | 59.965 | 55.0 | 11.94 | 10.01 | 0.0 | 4.61 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 0.326238 | ACCCCCGAAGCTCCTTATCA | 60.326 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
27 | 28 | 1.539929 | CCGAAGCTCCTTATCAGCCAG | 60.540 | 57.143 | 0.00 | 0.00 | 37.63 | 4.85 |
32 | 33 | 0.835941 | CTCCTTATCAGCCAGTGCCT | 59.164 | 55.000 | 0.00 | 0.00 | 38.69 | 4.75 |
43 | 44 | 4.861203 | AGTGCCTGAGCTCTGAGA | 57.139 | 55.556 | 21.10 | 4.96 | 41.19 | 3.27 |
50 | 51 | 2.546373 | GCCTGAGCTCTGAGATCACATC | 60.546 | 54.545 | 20.70 | 9.45 | 35.46 | 3.06 |
79 | 80 | 4.036498 | CCTTGAAGCTCCATGTTCATCATC | 59.964 | 45.833 | 0.00 | 0.00 | 34.09 | 2.92 |
80 | 81 | 4.224991 | TGAAGCTCCATGTTCATCATCA | 57.775 | 40.909 | 0.00 | 0.00 | 34.09 | 3.07 |
88 | 89 | 3.474600 | CATGTTCATCATCACCTCCCTC | 58.525 | 50.000 | 0.00 | 0.00 | 34.09 | 4.30 |
95 | 96 | 0.461961 | CATCACCTCCCTCGAGTTCC | 59.538 | 60.000 | 12.31 | 0.00 | 33.93 | 3.62 |
129 | 130 | 0.179124 | TTGCAAAGCCCGTTGTTGAC | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
137 | 138 | 0.531090 | CCCGTTGTTGACTCCGTTCA | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
161 | 162 | 3.434637 | CGACTATTTCGGCCAAAATTGG | 58.565 | 45.455 | 7.03 | 7.84 | 44.60 | 3.16 |
224 | 229 | 3.902162 | GAGTACGCGGCGGTTGTCA | 62.902 | 63.158 | 27.37 | 1.19 | 0.00 | 3.58 |
225 | 230 | 2.812178 | GTACGCGGCGGTTGTCAT | 60.812 | 61.111 | 27.37 | 5.96 | 0.00 | 3.06 |
231 | 236 | 1.787847 | CGGCGGTTGTCATTGAGTC | 59.212 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
232 | 237 | 0.670546 | CGGCGGTTGTCATTGAGTCT | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
233 | 238 | 1.079503 | GGCGGTTGTCATTGAGTCTC | 58.920 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
234 | 239 | 0.716108 | GCGGTTGTCATTGAGTCTCG | 59.284 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
235 | 240 | 1.668919 | GCGGTTGTCATTGAGTCTCGA | 60.669 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
236 | 241 | 2.672714 | CGGTTGTCATTGAGTCTCGAA | 58.327 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
237 | 242 | 3.254060 | CGGTTGTCATTGAGTCTCGAAT | 58.746 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
238 | 243 | 3.679980 | CGGTTGTCATTGAGTCTCGAATT | 59.320 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
239 | 244 | 4.862574 | CGGTTGTCATTGAGTCTCGAATTA | 59.137 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
240 | 245 | 5.004821 | CGGTTGTCATTGAGTCTCGAATTAG | 59.995 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
241 | 246 | 6.100004 | GGTTGTCATTGAGTCTCGAATTAGA | 58.900 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
242 | 247 | 6.254589 | GGTTGTCATTGAGTCTCGAATTAGAG | 59.745 | 42.308 | 9.13 | 9.13 | 39.52 | 2.43 |
243 | 248 | 5.344066 | TGTCATTGAGTCTCGAATTAGAGC | 58.656 | 41.667 | 10.46 | 6.35 | 38.12 | 4.09 |
244 | 249 | 5.105756 | TGTCATTGAGTCTCGAATTAGAGCA | 60.106 | 40.000 | 10.46 | 1.15 | 38.12 | 4.26 |
245 | 250 | 5.807520 | GTCATTGAGTCTCGAATTAGAGCAA | 59.192 | 40.000 | 10.46 | 9.43 | 38.12 | 3.91 |
246 | 251 | 6.478344 | GTCATTGAGTCTCGAATTAGAGCAAT | 59.522 | 38.462 | 10.46 | 11.03 | 38.12 | 3.56 |
247 | 252 | 6.478016 | TCATTGAGTCTCGAATTAGAGCAATG | 59.522 | 38.462 | 24.74 | 24.74 | 43.04 | 2.82 |
248 | 253 | 4.115516 | TGAGTCTCGAATTAGAGCAATGC | 58.884 | 43.478 | 10.46 | 0.00 | 38.12 | 3.56 |
249 | 254 | 4.142071 | TGAGTCTCGAATTAGAGCAATGCT | 60.142 | 41.667 | 7.79 | 7.79 | 43.88 | 3.79 |
250 | 255 | 5.067805 | TGAGTCTCGAATTAGAGCAATGCTA | 59.932 | 40.000 | 8.12 | 0.00 | 39.88 | 3.49 |
251 | 256 | 5.527951 | AGTCTCGAATTAGAGCAATGCTAG | 58.472 | 41.667 | 8.12 | 0.00 | 39.88 | 3.42 |
252 | 257 | 5.300539 | AGTCTCGAATTAGAGCAATGCTAGA | 59.699 | 40.000 | 8.12 | 1.37 | 39.88 | 2.43 |
253 | 258 | 5.401079 | GTCTCGAATTAGAGCAATGCTAGAC | 59.599 | 44.000 | 8.12 | 11.10 | 39.88 | 2.59 |
254 | 259 | 4.621991 | TCGAATTAGAGCAATGCTAGACC | 58.378 | 43.478 | 8.12 | 0.00 | 39.88 | 3.85 |
255 | 260 | 4.342378 | TCGAATTAGAGCAATGCTAGACCT | 59.658 | 41.667 | 8.12 | 3.29 | 39.88 | 3.85 |
256 | 261 | 5.535030 | TCGAATTAGAGCAATGCTAGACCTA | 59.465 | 40.000 | 8.12 | 2.17 | 39.88 | 3.08 |
257 | 262 | 5.631512 | CGAATTAGAGCAATGCTAGACCTAC | 59.368 | 44.000 | 8.12 | 0.00 | 39.88 | 3.18 |
258 | 263 | 4.569761 | TTAGAGCAATGCTAGACCTACG | 57.430 | 45.455 | 8.12 | 0.00 | 39.88 | 3.51 |
259 | 264 | 2.656002 | AGAGCAATGCTAGACCTACGA | 58.344 | 47.619 | 8.12 | 0.00 | 39.88 | 3.43 |
260 | 265 | 3.024547 | AGAGCAATGCTAGACCTACGAA | 58.975 | 45.455 | 8.12 | 0.00 | 39.88 | 3.85 |
261 | 266 | 3.067461 | AGAGCAATGCTAGACCTACGAAG | 59.933 | 47.826 | 8.12 | 0.00 | 39.88 | 3.79 |
262 | 267 | 3.024547 | AGCAATGCTAGACCTACGAAGA | 58.975 | 45.455 | 5.69 | 0.00 | 36.99 | 2.87 |
263 | 268 | 3.639094 | AGCAATGCTAGACCTACGAAGAT | 59.361 | 43.478 | 5.69 | 0.00 | 36.99 | 2.40 |
264 | 269 | 4.827835 | AGCAATGCTAGACCTACGAAGATA | 59.172 | 41.667 | 5.69 | 0.00 | 36.99 | 1.98 |
265 | 270 | 5.478679 | AGCAATGCTAGACCTACGAAGATAT | 59.521 | 40.000 | 5.69 | 0.00 | 36.99 | 1.63 |
266 | 271 | 6.015010 | AGCAATGCTAGACCTACGAAGATATT | 60.015 | 38.462 | 5.69 | 0.00 | 36.99 | 1.28 |
267 | 272 | 6.309251 | GCAATGCTAGACCTACGAAGATATTC | 59.691 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
268 | 273 | 7.598278 | CAATGCTAGACCTACGAAGATATTCT | 58.402 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
269 | 274 | 8.731605 | CAATGCTAGACCTACGAAGATATTCTA | 58.268 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
270 | 275 | 7.670009 | TGCTAGACCTACGAAGATATTCTAC | 57.330 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
271 | 276 | 6.368243 | TGCTAGACCTACGAAGATATTCTACG | 59.632 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
272 | 277 | 6.368516 | GCTAGACCTACGAAGATATTCTACGT | 59.631 | 42.308 | 0.00 | 0.00 | 40.23 | 3.57 |
273 | 278 | 7.543868 | GCTAGACCTACGAAGATATTCTACGTA | 59.456 | 40.741 | 0.00 | 0.00 | 38.18 | 3.57 |
274 | 279 | 9.416794 | CTAGACCTACGAAGATATTCTACGTAA | 57.583 | 37.037 | 0.00 | 0.00 | 38.58 | 3.18 |
275 | 280 | 8.309163 | AGACCTACGAAGATATTCTACGTAAG | 57.691 | 38.462 | 0.00 | 0.00 | 38.58 | 2.34 |
276 | 281 | 6.896969 | ACCTACGAAGATATTCTACGTAAGC | 58.103 | 40.000 | 0.00 | 0.00 | 45.62 | 3.09 |
277 | 282 | 6.709846 | ACCTACGAAGATATTCTACGTAAGCT | 59.290 | 38.462 | 0.00 | 0.00 | 45.62 | 3.74 |
278 | 283 | 7.875041 | ACCTACGAAGATATTCTACGTAAGCTA | 59.125 | 37.037 | 0.00 | 0.00 | 45.62 | 3.32 |
279 | 284 | 8.715998 | CCTACGAAGATATTCTACGTAAGCTAA | 58.284 | 37.037 | 0.00 | 0.00 | 45.62 | 3.09 |
280 | 285 | 9.527566 | CTACGAAGATATTCTACGTAAGCTAAC | 57.472 | 37.037 | 0.00 | 0.00 | 45.62 | 2.34 |
287 | 292 | 4.104143 | CGTAAGCTAACGGGCAGG | 57.896 | 61.111 | 0.00 | 0.00 | 39.19 | 4.85 |
288 | 293 | 2.171725 | CGTAAGCTAACGGGCAGGC | 61.172 | 63.158 | 0.00 | 0.00 | 39.19 | 4.85 |
289 | 294 | 1.078708 | GTAAGCTAACGGGCAGGCA | 60.079 | 57.895 | 0.00 | 0.00 | 34.17 | 4.75 |
290 | 295 | 0.463833 | GTAAGCTAACGGGCAGGCAT | 60.464 | 55.000 | 0.00 | 0.00 | 34.17 | 4.40 |
291 | 296 | 1.124780 | TAAGCTAACGGGCAGGCATA | 58.875 | 50.000 | 0.00 | 0.00 | 34.17 | 3.14 |
292 | 297 | 0.179045 | AAGCTAACGGGCAGGCATAG | 60.179 | 55.000 | 0.00 | 0.00 | 34.17 | 2.23 |
293 | 298 | 1.598130 | GCTAACGGGCAGGCATAGG | 60.598 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
294 | 299 | 1.830145 | CTAACGGGCAGGCATAGGT | 59.170 | 57.895 | 0.00 | 0.00 | 0.00 | 3.08 |
295 | 300 | 0.532862 | CTAACGGGCAGGCATAGGTG | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
296 | 301 | 1.978455 | TAACGGGCAGGCATAGGTGG | 61.978 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
297 | 302 | 3.479203 | CGGGCAGGCATAGGTGGA | 61.479 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
298 | 303 | 2.512896 | GGGCAGGCATAGGTGGAG | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
299 | 304 | 2.512896 | GGCAGGCATAGGTGGAGG | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
300 | 305 | 2.072487 | GGCAGGCATAGGTGGAGGA | 61.072 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
301 | 306 | 1.422161 | GGCAGGCATAGGTGGAGGAT | 61.422 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
302 | 307 | 0.475906 | GCAGGCATAGGTGGAGGATT | 59.524 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
303 | 308 | 1.699634 | GCAGGCATAGGTGGAGGATTA | 59.300 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
304 | 309 | 2.551071 | GCAGGCATAGGTGGAGGATTAC | 60.551 | 54.545 | 0.00 | 0.00 | 0.00 | 1.89 |
305 | 310 | 2.975489 | CAGGCATAGGTGGAGGATTACT | 59.025 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
306 | 311 | 4.160329 | CAGGCATAGGTGGAGGATTACTA | 58.840 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
307 | 312 | 4.780021 | CAGGCATAGGTGGAGGATTACTAT | 59.220 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
308 | 313 | 5.249393 | CAGGCATAGGTGGAGGATTACTATT | 59.751 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
309 | 314 | 5.249393 | AGGCATAGGTGGAGGATTACTATTG | 59.751 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
310 | 315 | 5.491982 | GCATAGGTGGAGGATTACTATTGG | 58.508 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
311 | 316 | 5.248477 | GCATAGGTGGAGGATTACTATTGGA | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 3.53 |
312 | 317 | 6.702329 | CATAGGTGGAGGATTACTATTGGAC | 58.298 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
313 | 318 | 3.974642 | AGGTGGAGGATTACTATTGGACC | 59.025 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
314 | 319 | 3.974642 | GGTGGAGGATTACTATTGGACCT | 59.025 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
315 | 320 | 5.102783 | AGGTGGAGGATTACTATTGGACCTA | 60.103 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
316 | 321 | 5.605488 | GGTGGAGGATTACTATTGGACCTAA | 59.395 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
317 | 322 | 6.239629 | GGTGGAGGATTACTATTGGACCTAAG | 60.240 | 46.154 | 0.00 | 0.00 | 0.00 | 2.18 |
318 | 323 | 5.844516 | TGGAGGATTACTATTGGACCTAAGG | 59.155 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
319 | 324 | 5.248705 | GGAGGATTACTATTGGACCTAAGGG | 59.751 | 48.000 | 0.00 | 0.00 | 38.88 | 3.95 |
320 | 325 | 5.163390 | AGGATTACTATTGGACCTAAGGGG | 58.837 | 45.833 | 0.00 | 0.00 | 41.89 | 4.79 |
321 | 326 | 4.288887 | GGATTACTATTGGACCTAAGGGGG | 59.711 | 50.000 | 0.00 | 0.00 | 40.03 | 5.40 |
357 | 362 | 3.985410 | CTGAAAATCAGGGGGCAGA | 57.015 | 52.632 | 0.00 | 0.00 | 40.71 | 4.26 |
358 | 363 | 1.760192 | CTGAAAATCAGGGGGCAGAG | 58.240 | 55.000 | 0.00 | 0.00 | 40.71 | 3.35 |
359 | 364 | 1.283029 | CTGAAAATCAGGGGGCAGAGA | 59.717 | 52.381 | 0.00 | 0.00 | 40.71 | 3.10 |
360 | 365 | 1.925255 | TGAAAATCAGGGGGCAGAGAT | 59.075 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
361 | 366 | 3.122480 | TGAAAATCAGGGGGCAGAGATA | 58.878 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
362 | 367 | 3.527253 | TGAAAATCAGGGGGCAGAGATAA | 59.473 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
363 | 368 | 4.168675 | TGAAAATCAGGGGGCAGAGATAAT | 59.831 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
364 | 369 | 4.821532 | AAATCAGGGGGCAGAGATAATT | 57.178 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
365 | 370 | 5.930209 | AAATCAGGGGGCAGAGATAATTA | 57.070 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
366 | 371 | 5.511386 | AATCAGGGGGCAGAGATAATTAG | 57.489 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
367 | 372 | 2.639839 | TCAGGGGGCAGAGATAATTAGC | 59.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
368 | 373 | 1.625818 | AGGGGGCAGAGATAATTAGCG | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
369 | 374 | 1.623811 | GGGGGCAGAGATAATTAGCGA | 59.376 | 52.381 | 0.00 | 0.00 | 0.00 | 4.93 |
370 | 375 | 2.354203 | GGGGGCAGAGATAATTAGCGAG | 60.354 | 54.545 | 0.00 | 0.00 | 0.00 | 5.03 |
371 | 376 | 2.563179 | GGGGCAGAGATAATTAGCGAGA | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
372 | 377 | 3.006967 | GGGGCAGAGATAATTAGCGAGAA | 59.993 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
373 | 378 | 4.241681 | GGGCAGAGATAATTAGCGAGAAG | 58.758 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
374 | 379 | 4.241681 | GGCAGAGATAATTAGCGAGAAGG | 58.758 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
375 | 380 | 4.021894 | GGCAGAGATAATTAGCGAGAAGGA | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
376 | 381 | 5.337169 | GGCAGAGATAATTAGCGAGAAGGAT | 60.337 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
377 | 382 | 6.162777 | GCAGAGATAATTAGCGAGAAGGATT | 58.837 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
378 | 383 | 6.648725 | GCAGAGATAATTAGCGAGAAGGATTT | 59.351 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
379 | 384 | 7.815068 | GCAGAGATAATTAGCGAGAAGGATTTA | 59.185 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
380 | 385 | 9.134734 | CAGAGATAATTAGCGAGAAGGATTTAC | 57.865 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
381 | 386 | 8.024285 | AGAGATAATTAGCGAGAAGGATTTACG | 58.976 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
382 | 387 | 7.659186 | AGATAATTAGCGAGAAGGATTTACGT | 58.341 | 34.615 | 0.00 | 0.00 | 31.75 | 3.57 |
383 | 388 | 8.790718 | AGATAATTAGCGAGAAGGATTTACGTA | 58.209 | 33.333 | 0.00 | 0.00 | 31.75 | 3.57 |
384 | 389 | 9.570488 | GATAATTAGCGAGAAGGATTTACGTAT | 57.430 | 33.333 | 0.00 | 0.00 | 31.75 | 3.06 |
387 | 392 | 8.739649 | ATTAGCGAGAAGGATTTACGTATAAC | 57.260 | 34.615 | 0.00 | 0.00 | 31.75 | 1.89 |
388 | 393 | 5.527033 | AGCGAGAAGGATTTACGTATAACC | 58.473 | 41.667 | 0.00 | 0.00 | 31.75 | 2.85 |
389 | 394 | 5.301298 | AGCGAGAAGGATTTACGTATAACCT | 59.699 | 40.000 | 8.69 | 8.69 | 31.75 | 3.50 |
390 | 395 | 5.981915 | GCGAGAAGGATTTACGTATAACCTT | 59.018 | 40.000 | 21.73 | 21.73 | 39.89 | 3.50 |
395 | 400 | 8.856490 | GAAGGATTTACGTATAACCTTCGTAA | 57.144 | 34.615 | 26.97 | 5.63 | 44.38 | 3.18 |
396 | 401 | 8.634475 | AAGGATTTACGTATAACCTTCGTAAC | 57.366 | 34.615 | 17.80 | 0.56 | 45.23 | 2.50 |
397 | 402 | 8.000780 | AGGATTTACGTATAACCTTCGTAACT | 57.999 | 34.615 | 8.69 | 4.55 | 45.23 | 2.24 |
398 | 403 | 8.470002 | AGGATTTACGTATAACCTTCGTAACTT | 58.530 | 33.333 | 8.69 | 1.46 | 45.23 | 2.66 |
399 | 404 | 8.746751 | GGATTTACGTATAACCTTCGTAACTTC | 58.253 | 37.037 | 8.50 | 8.65 | 45.23 | 3.01 |
400 | 405 | 9.289303 | GATTTACGTATAACCTTCGTAACTTCA | 57.711 | 33.333 | 8.50 | 0.00 | 45.23 | 3.02 |
401 | 406 | 8.447787 | TTTACGTATAACCTTCGTAACTTCAC | 57.552 | 34.615 | 8.50 | 0.00 | 45.23 | 3.18 |
402 | 407 | 5.088739 | ACGTATAACCTTCGTAACTTCACG | 58.911 | 41.667 | 0.00 | 0.00 | 43.28 | 4.35 |
403 | 408 | 5.088739 | CGTATAACCTTCGTAACTTCACGT | 58.911 | 41.667 | 0.00 | 0.00 | 42.51 | 4.49 |
404 | 409 | 6.128391 | ACGTATAACCTTCGTAACTTCACGTA | 60.128 | 38.462 | 0.00 | 0.00 | 42.51 | 3.57 |
405 | 410 | 6.409185 | CGTATAACCTTCGTAACTTCACGTAG | 59.591 | 42.308 | 0.00 | 0.00 | 42.51 | 3.51 |
409 | 414 | 3.893720 | CTTCGTAACTTCACGTAGGTGT | 58.106 | 45.455 | 14.78 | 0.00 | 44.68 | 4.16 |
410 | 415 | 5.034554 | CTTCGTAACTTCACGTAGGTGTA | 57.965 | 43.478 | 14.78 | 5.16 | 44.68 | 2.90 |
411 | 416 | 4.668576 | TCGTAACTTCACGTAGGTGTAG | 57.331 | 45.455 | 17.43 | 17.43 | 44.43 | 2.74 |
412 | 417 | 4.314961 | TCGTAACTTCACGTAGGTGTAGA | 58.685 | 43.478 | 23.59 | 4.76 | 42.31 | 2.59 |
413 | 418 | 4.754618 | TCGTAACTTCACGTAGGTGTAGAA | 59.245 | 41.667 | 23.59 | 11.62 | 42.31 | 2.10 |
414 | 419 | 5.412594 | TCGTAACTTCACGTAGGTGTAGAAT | 59.587 | 40.000 | 23.59 | 15.58 | 42.31 | 2.40 |
415 | 420 | 6.072508 | TCGTAACTTCACGTAGGTGTAGAATT | 60.073 | 38.462 | 23.59 | 13.45 | 42.31 | 2.17 |
416 | 421 | 7.119116 | TCGTAACTTCACGTAGGTGTAGAATTA | 59.881 | 37.037 | 23.59 | 12.67 | 42.31 | 1.40 |
417 | 422 | 7.912250 | CGTAACTTCACGTAGGTGTAGAATTAT | 59.088 | 37.037 | 23.59 | 10.07 | 42.31 | 1.28 |
418 | 423 | 9.578439 | GTAACTTCACGTAGGTGTAGAATTATT | 57.422 | 33.333 | 23.59 | 12.35 | 42.31 | 1.40 |
419 | 424 | 8.475331 | AACTTCACGTAGGTGTAGAATTATTG | 57.525 | 34.615 | 23.59 | 1.90 | 42.31 | 1.90 |
431 | 436 | 7.746475 | GGTGTAGAATTATTGCTCGAATTATGC | 59.254 | 37.037 | 0.00 | 0.00 | 0.00 | 3.14 |
437 | 442 | 6.676237 | TTATTGCTCGAATTATGCAGAACA | 57.324 | 33.333 | 0.00 | 0.00 | 38.01 | 3.18 |
439 | 444 | 5.565592 | TTGCTCGAATTATGCAGAACATT | 57.434 | 34.783 | 0.00 | 0.00 | 40.38 | 2.71 |
463 | 468 | 2.547218 | GCTGTGTCCGTTGGAGAAAGTA | 60.547 | 50.000 | 2.51 | 0.00 | 33.38 | 2.24 |
468 | 473 | 5.008217 | TGTGTCCGTTGGAGAAAGTATTTTG | 59.992 | 40.000 | 0.00 | 0.00 | 39.27 | 2.44 |
471 | 476 | 3.488489 | CGTTGGAGAAAGTATTTTGCCG | 58.512 | 45.455 | 0.00 | 0.00 | 39.27 | 5.69 |
474 | 479 | 2.487762 | TGGAGAAAGTATTTTGCCGCAG | 59.512 | 45.455 | 0.00 | 0.00 | 39.27 | 5.18 |
476 | 481 | 3.426292 | GGAGAAAGTATTTTGCCGCAGTC | 60.426 | 47.826 | 0.00 | 0.00 | 39.27 | 3.51 |
477 | 482 | 3.146066 | AGAAAGTATTTTGCCGCAGTCA | 58.854 | 40.909 | 0.00 | 0.00 | 39.27 | 3.41 |
485 | 490 | 3.552604 | TTTGCCGCAGTCAGTATTTTC | 57.447 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
486 | 491 | 2.472695 | TGCCGCAGTCAGTATTTTCT | 57.527 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
487 | 492 | 3.603158 | TGCCGCAGTCAGTATTTTCTA | 57.397 | 42.857 | 0.00 | 0.00 | 0.00 | 2.10 |
496 | 501 | 6.314896 | GCAGTCAGTATTTTCTAATGCAGAGT | 59.685 | 38.462 | 0.00 | 0.00 | 33.83 | 3.24 |
507 | 512 | 7.517614 | TTCTAATGCAGAGTAGGATAGTGAG | 57.482 | 40.000 | 0.00 | 0.00 | 33.83 | 3.51 |
516 | 521 | 4.597004 | AGTAGGATAGTGAGTCGGTTGAA | 58.403 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
531 | 551 | 0.843309 | TTGAACTTGCACCAGGGAGA | 59.157 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
581 | 608 | 2.435805 | TCATGCCAGATAAGAGGGTGAC | 59.564 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
594 | 627 | 1.847737 | AGGGTGACAGTTTGGTTGGTA | 59.152 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
644 | 677 | 2.979814 | TATGCACTGGATTGTAGCGT | 57.020 | 45.000 | 0.00 | 0.00 | 0.00 | 5.07 |
661 | 694 | 0.937304 | CGTAGCAATTCCCGTGGATG | 59.063 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
761 | 1010 | 0.905357 | CCAAACCCAACCCAACACAA | 59.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
773 | 1022 | 0.859788 | CAACACAACACCGCGACAAC | 60.860 | 55.000 | 8.23 | 0.00 | 0.00 | 3.32 |
774 | 1023 | 1.299562 | AACACAACACCGCGACAACA | 61.300 | 50.000 | 8.23 | 0.00 | 0.00 | 3.33 |
775 | 1024 | 1.297304 | CACAACACCGCGACAACAC | 60.297 | 57.895 | 8.23 | 0.00 | 0.00 | 3.32 |
776 | 1025 | 1.742140 | ACAACACCGCGACAACACA | 60.742 | 52.632 | 8.23 | 0.00 | 0.00 | 3.72 |
777 | 1026 | 1.299562 | ACAACACCGCGACAACACAA | 61.300 | 50.000 | 8.23 | 0.00 | 0.00 | 3.33 |
784 | 1033 | 2.280524 | CGACAACACAAGGCCGGA | 60.281 | 61.111 | 5.05 | 0.00 | 0.00 | 5.14 |
813 | 1062 | 2.587522 | TCTCACACTCACAGCACTACT | 58.412 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
814 | 1063 | 2.959030 | TCTCACACTCACAGCACTACTT | 59.041 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
841 | 1090 | 1.078918 | CTCATTCTCCACTGCCGCA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
895 | 1144 | 4.101448 | GCCGCATCCACTCCACCT | 62.101 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1302 | 1572 | 3.000819 | ATCCACGACGGCCTGGAA | 61.001 | 61.111 | 13.30 | 0.00 | 40.05 | 3.53 |
1430 | 1700 | 2.111162 | ACGAGATCGGCAAGGAGAG | 58.889 | 57.895 | 7.22 | 0.00 | 44.95 | 3.20 |
1444 | 1723 | 4.252878 | CAAGGAGAGGAAGAAGAAGAAGC | 58.747 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1494 | 1773 | 3.385755 | AGCTTCTTGGCTTCAAACATGTT | 59.614 | 39.130 | 4.92 | 4.92 | 39.86 | 2.71 |
1552 | 1836 | 0.251354 | ATGGACGCTCTTGATGTGCT | 59.749 | 50.000 | 0.00 | 0.00 | 33.42 | 4.40 |
1608 | 1895 | 7.797123 | CGTCGTTTTGAGTAAATAAAGAGCTTT | 59.203 | 33.333 | 0.74 | 0.74 | 36.63 | 3.51 |
1611 | 1898 | 7.860872 | CGTTTTGAGTAAATAAAGAGCTTTGGT | 59.139 | 33.333 | 5.76 | 0.00 | 34.23 | 3.67 |
1635 | 1922 | 3.322541 | TCGTTGACTTGAACATGGGACTA | 59.677 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
1809 | 2119 | 0.040958 | GCGCACTTTGTGAGGTCTTG | 60.041 | 55.000 | 0.30 | 0.00 | 35.23 | 3.02 |
1826 | 2138 | 5.254032 | AGGTCTTGGTCCCTAGATGAAATTT | 59.746 | 40.000 | 0.88 | 0.00 | 31.32 | 1.82 |
1847 | 2159 | 2.224185 | TGACTCGCAGCTCAAAAGGTTA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
1849 | 2161 | 1.734465 | CTCGCAGCTCAAAAGGTTAGG | 59.266 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
1851 | 2163 | 1.880027 | CGCAGCTCAAAAGGTTAGGTT | 59.120 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
1852 | 2164 | 2.293399 | CGCAGCTCAAAAGGTTAGGTTT | 59.707 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
1853 | 2165 | 3.609409 | CGCAGCTCAAAAGGTTAGGTTTC | 60.609 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
1854 | 2166 | 3.570125 | GCAGCTCAAAAGGTTAGGTTTCT | 59.430 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1855 | 2167 | 4.038042 | GCAGCTCAAAAGGTTAGGTTTCTT | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
1856 | 2168 | 5.763088 | CAGCTCAAAAGGTTAGGTTTCTTC | 58.237 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1857 | 2169 | 5.299279 | CAGCTCAAAAGGTTAGGTTTCTTCA | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1858 | 2170 | 5.891551 | AGCTCAAAAGGTTAGGTTTCTTCAA | 59.108 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1859 | 2171 | 6.039829 | AGCTCAAAAGGTTAGGTTTCTTCAAG | 59.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
1867 | 2179 | 2.936202 | AGGTTTCTTCAAGCAAGCAGA | 58.064 | 42.857 | 1.81 | 0.00 | 35.10 | 4.26 |
1881 | 2193 | 4.098349 | AGCAAGCAGAAGTTTTGATGTGAA | 59.902 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
1891 | 2203 | 6.882610 | AGTTTTGATGTGAAAGCATCTACA | 57.117 | 33.333 | 7.45 | 0.00 | 44.02 | 2.74 |
1893 | 2205 | 4.952262 | TTGATGTGAAAGCATCTACAGC | 57.048 | 40.909 | 7.45 | 0.00 | 44.02 | 4.40 |
1895 | 2207 | 1.725641 | TGTGAAAGCATCTACAGCCG | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1901 | 2213 | 1.776662 | AGCATCTACAGCCGGACTTA | 58.223 | 50.000 | 5.05 | 0.00 | 0.00 | 2.24 |
1917 | 2229 | 2.937149 | GACTTAACAAATCCGGCTCCTC | 59.063 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1921 | 2233 | 1.534729 | ACAAATCCGGCTCCTCAAAC | 58.465 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
1922 | 2234 | 1.202879 | ACAAATCCGGCTCCTCAAACA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1928 | 2240 | 1.966451 | GGCTCCTCAAACACCCGTG | 60.966 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
1930 | 2242 | 1.228657 | GCTCCTCAAACACCCGTGAC | 61.229 | 60.000 | 0.96 | 0.00 | 0.00 | 3.67 |
1932 | 2244 | 0.179067 | TCCTCAAACACCCGTGACAC | 60.179 | 55.000 | 0.96 | 0.00 | 0.00 | 3.67 |
1968 | 2280 | 2.582959 | GAGCATCGACGGATCACAC | 58.417 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
1969 | 2281 | 0.872021 | GAGCATCGACGGATCACACC | 60.872 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1970 | 2282 | 1.141881 | GCATCGACGGATCACACCT | 59.858 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
1971 | 2283 | 0.460284 | GCATCGACGGATCACACCTT | 60.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1972 | 2284 | 1.280982 | CATCGACGGATCACACCTTG | 58.719 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1973 | 2285 | 0.895530 | ATCGACGGATCACACCTTGT | 59.104 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1974 | 2286 | 1.536940 | TCGACGGATCACACCTTGTA | 58.463 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1975 | 2287 | 2.097036 | TCGACGGATCACACCTTGTAT | 58.903 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
2046 | 2360 | 7.271511 | ACAAACCATGCAAAAGAATTCTTACA | 58.728 | 30.769 | 20.76 | 18.17 | 34.61 | 2.41 |
2141 | 2455 | 4.424566 | GGTAGTTGGGCGCGTCGA | 62.425 | 66.667 | 8.43 | 0.00 | 0.00 | 4.20 |
2215 | 2529 | 1.078848 | GTGTTCCGCCTCTGCATCT | 60.079 | 57.895 | 0.00 | 0.00 | 37.32 | 2.90 |
2228 | 2542 | 4.511527 | CTCTGCATCTTGTAGACAATGGT | 58.488 | 43.478 | 0.00 | 0.00 | 34.19 | 3.55 |
2238 | 2552 | 2.086610 | AGACAATGGTGTTTGGCCTT | 57.913 | 45.000 | 3.32 | 0.00 | 38.41 | 4.35 |
2287 | 2601 | 3.386867 | GATTGCCTGTTGCTCCGCG | 62.387 | 63.158 | 0.00 | 0.00 | 42.00 | 6.46 |
2298 | 2612 | 3.118454 | CTCCGCGTGCAAATCCGT | 61.118 | 61.111 | 4.92 | 0.00 | 0.00 | 4.69 |
2310 | 2624 | 0.392060 | AAATCCGTAGCCCCAACGTC | 60.392 | 55.000 | 0.00 | 0.00 | 38.67 | 4.34 |
2343 | 2657 | 1.309688 | GTGCTCCTCCTCCTCCTCT | 59.690 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
2366 | 2683 | 1.229658 | CCTCCTCTCCCACCACCTT | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 3.50 |
2471 | 2788 | 2.669849 | CTCAAGGAGCTGCAGCCT | 59.330 | 61.111 | 34.39 | 22.47 | 43.38 | 4.58 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 1.262640 | TAAGGAGCTTCGGGGGTGAC | 61.263 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
27 | 28 | 0.822811 | TGATCTCAGAGCTCAGGCAC | 59.177 | 55.000 | 17.77 | 3.34 | 41.70 | 5.01 |
32 | 33 | 2.648059 | TCGATGTGATCTCAGAGCTCA | 58.352 | 47.619 | 17.77 | 0.00 | 0.00 | 4.26 |
43 | 44 | 2.477825 | CTTCAAGGCGATCGATGTGAT | 58.522 | 47.619 | 21.57 | 0.00 | 41.06 | 3.06 |
50 | 51 | 0.531532 | ATGGAGCTTCAAGGCGATCG | 60.532 | 55.000 | 11.69 | 11.69 | 37.29 | 3.69 |
79 | 80 | 2.711922 | CGGGAACTCGAGGGAGGTG | 61.712 | 68.421 | 18.41 | 0.00 | 41.35 | 4.00 |
80 | 81 | 2.362632 | CGGGAACTCGAGGGAGGT | 60.363 | 66.667 | 18.41 | 0.00 | 44.89 | 3.85 |
88 | 89 | 0.035176 | TTTTGGTACCCGGGAACTCG | 59.965 | 55.000 | 32.02 | 0.00 | 0.00 | 4.18 |
95 | 96 | 0.962489 | TGCAACATTTTGGTACCCGG | 59.038 | 50.000 | 10.07 | 0.00 | 32.81 | 5.73 |
115 | 116 | 1.597027 | CGGAGTCAACAACGGGCTT | 60.597 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
129 | 130 | 2.279136 | CGAAATAGTCGCTTGAACGGAG | 59.721 | 50.000 | 0.00 | 0.00 | 44.14 | 4.63 |
137 | 138 | 7.839883 | CCAATTTTGGCCGAAATAGTCGCTT | 62.840 | 44.000 | 27.81 | 11.22 | 43.15 | 4.68 |
161 | 162 | 3.865164 | CCCGTTCGGTACCATAAAAGTAC | 59.135 | 47.826 | 13.54 | 0.00 | 39.51 | 2.73 |
171 | 173 | 0.823460 | TTGGTATCCCGTTCGGTACC | 59.177 | 55.000 | 18.13 | 18.13 | 38.12 | 3.34 |
174 | 176 | 0.533951 | GACTTGGTATCCCGTTCGGT | 59.466 | 55.000 | 10.36 | 0.00 | 0.00 | 4.69 |
195 | 200 | 4.402192 | CGTACTCGCCATGTCCAG | 57.598 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
214 | 219 | 1.079503 | GAGACTCAATGACAACCGCC | 58.920 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
221 | 226 | 5.344066 | TGCTCTAATTCGAGACTCAATGAC | 58.656 | 41.667 | 10.99 | 0.00 | 32.74 | 3.06 |
224 | 229 | 5.236047 | GCATTGCTCTAATTCGAGACTCAAT | 59.764 | 40.000 | 10.99 | 7.97 | 32.74 | 2.57 |
225 | 230 | 4.568359 | GCATTGCTCTAATTCGAGACTCAA | 59.432 | 41.667 | 10.99 | 6.17 | 32.74 | 3.02 |
231 | 236 | 4.683781 | GGTCTAGCATTGCTCTAATTCGAG | 59.316 | 45.833 | 15.81 | 4.43 | 40.44 | 4.04 |
232 | 237 | 4.342378 | AGGTCTAGCATTGCTCTAATTCGA | 59.658 | 41.667 | 15.81 | 0.00 | 40.44 | 3.71 |
233 | 238 | 4.626042 | AGGTCTAGCATTGCTCTAATTCG | 58.374 | 43.478 | 15.81 | 0.00 | 40.44 | 3.34 |
234 | 239 | 5.631512 | CGTAGGTCTAGCATTGCTCTAATTC | 59.368 | 44.000 | 15.81 | 1.83 | 40.44 | 2.17 |
235 | 240 | 5.302059 | TCGTAGGTCTAGCATTGCTCTAATT | 59.698 | 40.000 | 15.81 | 2.47 | 40.44 | 1.40 |
236 | 241 | 4.827835 | TCGTAGGTCTAGCATTGCTCTAAT | 59.172 | 41.667 | 15.81 | 1.68 | 40.44 | 1.73 |
237 | 242 | 4.204799 | TCGTAGGTCTAGCATTGCTCTAA | 58.795 | 43.478 | 15.81 | 0.00 | 40.44 | 2.10 |
238 | 243 | 3.816994 | TCGTAGGTCTAGCATTGCTCTA | 58.183 | 45.455 | 15.81 | 7.54 | 40.44 | 2.43 |
239 | 244 | 2.656002 | TCGTAGGTCTAGCATTGCTCT | 58.344 | 47.619 | 15.81 | 8.58 | 40.44 | 4.09 |
240 | 245 | 3.066900 | TCTTCGTAGGTCTAGCATTGCTC | 59.933 | 47.826 | 15.81 | 0.36 | 40.44 | 4.26 |
241 | 246 | 3.024547 | TCTTCGTAGGTCTAGCATTGCT | 58.975 | 45.455 | 16.63 | 16.63 | 43.41 | 3.91 |
242 | 247 | 3.438297 | TCTTCGTAGGTCTAGCATTGC | 57.562 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
243 | 248 | 7.598278 | AGAATATCTTCGTAGGTCTAGCATTG | 58.402 | 38.462 | 0.00 | 0.00 | 36.45 | 2.82 |
244 | 249 | 7.768807 | AGAATATCTTCGTAGGTCTAGCATT | 57.231 | 36.000 | 0.00 | 0.00 | 36.45 | 3.56 |
245 | 250 | 7.064847 | CGTAGAATATCTTCGTAGGTCTAGCAT | 59.935 | 40.741 | 0.00 | 0.00 | 33.49 | 3.79 |
246 | 251 | 6.368243 | CGTAGAATATCTTCGTAGGTCTAGCA | 59.632 | 42.308 | 0.00 | 0.00 | 33.49 | 3.49 |
247 | 252 | 6.368516 | ACGTAGAATATCTTCGTAGGTCTAGC | 59.631 | 42.308 | 9.77 | 0.00 | 46.10 | 3.42 |
248 | 253 | 7.887996 | ACGTAGAATATCTTCGTAGGTCTAG | 57.112 | 40.000 | 9.77 | 0.00 | 46.10 | 2.43 |
255 | 260 | 8.217115 | CGTTAGCTTACGTAGAATATCTTCGTA | 58.783 | 37.037 | 16.69 | 13.02 | 46.10 | 3.43 |
257 | 262 | 6.519078 | CCGTTAGCTTACGTAGAATATCTTCG | 59.481 | 42.308 | 22.21 | 5.08 | 41.95 | 3.79 |
258 | 263 | 6.800892 | CCCGTTAGCTTACGTAGAATATCTTC | 59.199 | 42.308 | 22.21 | 0.00 | 39.81 | 2.87 |
259 | 264 | 6.675987 | CCCGTTAGCTTACGTAGAATATCTT | 58.324 | 40.000 | 22.21 | 0.00 | 39.81 | 2.40 |
260 | 265 | 5.335504 | GCCCGTTAGCTTACGTAGAATATCT | 60.336 | 44.000 | 22.21 | 0.00 | 39.81 | 1.98 |
261 | 266 | 4.855937 | GCCCGTTAGCTTACGTAGAATATC | 59.144 | 45.833 | 22.21 | 0.00 | 39.81 | 1.63 |
262 | 267 | 4.279169 | TGCCCGTTAGCTTACGTAGAATAT | 59.721 | 41.667 | 22.21 | 0.00 | 39.81 | 1.28 |
263 | 268 | 3.631686 | TGCCCGTTAGCTTACGTAGAATA | 59.368 | 43.478 | 22.21 | 1.94 | 39.81 | 1.75 |
264 | 269 | 2.428171 | TGCCCGTTAGCTTACGTAGAAT | 59.572 | 45.455 | 22.21 | 0.00 | 39.81 | 2.40 |
265 | 270 | 1.818060 | TGCCCGTTAGCTTACGTAGAA | 59.182 | 47.619 | 22.21 | 6.80 | 39.81 | 2.10 |
266 | 271 | 1.402968 | CTGCCCGTTAGCTTACGTAGA | 59.597 | 52.381 | 22.21 | 5.95 | 39.81 | 2.59 |
267 | 272 | 1.535437 | CCTGCCCGTTAGCTTACGTAG | 60.535 | 57.143 | 22.21 | 16.35 | 39.81 | 3.51 |
268 | 273 | 0.457035 | CCTGCCCGTTAGCTTACGTA | 59.543 | 55.000 | 22.21 | 8.79 | 39.81 | 3.57 |
269 | 274 | 1.217244 | CCTGCCCGTTAGCTTACGT | 59.783 | 57.895 | 22.21 | 0.00 | 39.81 | 3.57 |
270 | 275 | 2.171725 | GCCTGCCCGTTAGCTTACG | 61.172 | 63.158 | 17.87 | 17.87 | 41.06 | 3.18 |
271 | 276 | 0.463833 | ATGCCTGCCCGTTAGCTTAC | 60.464 | 55.000 | 0.00 | 0.00 | 0.00 | 2.34 |
272 | 277 | 1.070134 | CTATGCCTGCCCGTTAGCTTA | 59.930 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
273 | 278 | 0.179045 | CTATGCCTGCCCGTTAGCTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
274 | 279 | 1.447643 | CTATGCCTGCCCGTTAGCT | 59.552 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
275 | 280 | 1.598130 | CCTATGCCTGCCCGTTAGC | 60.598 | 63.158 | 0.00 | 0.00 | 0.00 | 3.09 |
276 | 281 | 0.532862 | CACCTATGCCTGCCCGTTAG | 60.533 | 60.000 | 0.00 | 0.00 | 0.00 | 2.34 |
277 | 282 | 1.524961 | CACCTATGCCTGCCCGTTA | 59.475 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
278 | 283 | 2.272146 | CACCTATGCCTGCCCGTT | 59.728 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
279 | 284 | 3.797353 | CCACCTATGCCTGCCCGT | 61.797 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
280 | 285 | 3.466791 | CTCCACCTATGCCTGCCCG | 62.467 | 68.421 | 0.00 | 0.00 | 0.00 | 6.13 |
281 | 286 | 2.512896 | CTCCACCTATGCCTGCCC | 59.487 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
282 | 287 | 1.422161 | ATCCTCCACCTATGCCTGCC | 61.422 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
283 | 288 | 0.475906 | AATCCTCCACCTATGCCTGC | 59.524 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
284 | 289 | 2.975489 | AGTAATCCTCCACCTATGCCTG | 59.025 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
285 | 290 | 3.352611 | AGTAATCCTCCACCTATGCCT | 57.647 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
286 | 291 | 5.491982 | CAATAGTAATCCTCCACCTATGCC | 58.508 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
287 | 292 | 5.248477 | TCCAATAGTAATCCTCCACCTATGC | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 3.14 |
288 | 293 | 6.295916 | GGTCCAATAGTAATCCTCCACCTATG | 60.296 | 46.154 | 0.00 | 0.00 | 0.00 | 2.23 |
289 | 294 | 5.785940 | GGTCCAATAGTAATCCTCCACCTAT | 59.214 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
290 | 295 | 5.102783 | AGGTCCAATAGTAATCCTCCACCTA | 60.103 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
291 | 296 | 3.974642 | GGTCCAATAGTAATCCTCCACCT | 59.025 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
292 | 297 | 3.974642 | AGGTCCAATAGTAATCCTCCACC | 59.025 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
293 | 298 | 6.239629 | CCTTAGGTCCAATAGTAATCCTCCAC | 60.240 | 46.154 | 0.00 | 0.00 | 0.00 | 4.02 |
294 | 299 | 5.844516 | CCTTAGGTCCAATAGTAATCCTCCA | 59.155 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
295 | 300 | 5.248705 | CCCTTAGGTCCAATAGTAATCCTCC | 59.751 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
296 | 301 | 5.248705 | CCCCTTAGGTCCAATAGTAATCCTC | 59.751 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
297 | 302 | 5.163390 | CCCCTTAGGTCCAATAGTAATCCT | 58.837 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
298 | 303 | 4.288887 | CCCCCTTAGGTCCAATAGTAATCC | 59.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
299 | 304 | 5.500546 | CCCCCTTAGGTCCAATAGTAATC | 57.499 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
339 | 344 | 1.283029 | TCTCTGCCCCCTGATTTTCAG | 59.717 | 52.381 | 0.00 | 0.00 | 43.91 | 3.02 |
340 | 345 | 1.371467 | TCTCTGCCCCCTGATTTTCA | 58.629 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
341 | 346 | 2.744352 | ATCTCTGCCCCCTGATTTTC | 57.256 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
342 | 347 | 4.821532 | ATTATCTCTGCCCCCTGATTTT | 57.178 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
343 | 348 | 4.821532 | AATTATCTCTGCCCCCTGATTT | 57.178 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
344 | 349 | 4.263683 | GCTAATTATCTCTGCCCCCTGATT | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
345 | 350 | 3.265479 | GCTAATTATCTCTGCCCCCTGAT | 59.735 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
346 | 351 | 2.639839 | GCTAATTATCTCTGCCCCCTGA | 59.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
347 | 352 | 2.613977 | CGCTAATTATCTCTGCCCCCTG | 60.614 | 54.545 | 0.00 | 0.00 | 0.00 | 4.45 |
348 | 353 | 1.625818 | CGCTAATTATCTCTGCCCCCT | 59.374 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
349 | 354 | 1.623811 | TCGCTAATTATCTCTGCCCCC | 59.376 | 52.381 | 0.00 | 0.00 | 0.00 | 5.40 |
350 | 355 | 2.563179 | TCTCGCTAATTATCTCTGCCCC | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
351 | 356 | 3.944055 | TCTCGCTAATTATCTCTGCCC | 57.056 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
352 | 357 | 4.021894 | TCCTTCTCGCTAATTATCTCTGCC | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
353 | 358 | 5.127693 | TCCTTCTCGCTAATTATCTCTGC | 57.872 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
354 | 359 | 9.134734 | GTAAATCCTTCTCGCTAATTATCTCTG | 57.865 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
355 | 360 | 8.024285 | CGTAAATCCTTCTCGCTAATTATCTCT | 58.976 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
356 | 361 | 7.808856 | ACGTAAATCCTTCTCGCTAATTATCTC | 59.191 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
357 | 362 | 7.659186 | ACGTAAATCCTTCTCGCTAATTATCT | 58.341 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
358 | 363 | 7.870588 | ACGTAAATCCTTCTCGCTAATTATC | 57.129 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
361 | 366 | 9.189723 | GTTATACGTAAATCCTTCTCGCTAATT | 57.810 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
362 | 367 | 7.811713 | GGTTATACGTAAATCCTTCTCGCTAAT | 59.188 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
363 | 368 | 7.013655 | AGGTTATACGTAAATCCTTCTCGCTAA | 59.986 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
364 | 369 | 6.488006 | AGGTTATACGTAAATCCTTCTCGCTA | 59.512 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
365 | 370 | 5.301298 | AGGTTATACGTAAATCCTTCTCGCT | 59.699 | 40.000 | 0.00 | 0.00 | 0.00 | 4.93 |
366 | 371 | 5.527033 | AGGTTATACGTAAATCCTTCTCGC | 58.473 | 41.667 | 0.00 | 0.00 | 0.00 | 5.03 |
367 | 372 | 6.359087 | CGAAGGTTATACGTAAATCCTTCTCG | 59.641 | 42.308 | 30.28 | 23.40 | 44.77 | 4.04 |
368 | 373 | 7.199078 | ACGAAGGTTATACGTAAATCCTTCTC | 58.801 | 38.462 | 30.28 | 19.12 | 44.77 | 2.87 |
369 | 374 | 7.105241 | ACGAAGGTTATACGTAAATCCTTCT | 57.895 | 36.000 | 30.28 | 22.27 | 44.77 | 2.85 |
370 | 375 | 8.856490 | TTACGAAGGTTATACGTAAATCCTTC | 57.144 | 34.615 | 27.38 | 27.38 | 45.05 | 3.46 |
377 | 382 | 6.740905 | CGTGAAGTTACGAAGGTTATACGTAA | 59.259 | 38.462 | 0.00 | 0.00 | 46.46 | 3.18 |
378 | 383 | 6.128391 | ACGTGAAGTTACGAAGGTTATACGTA | 60.128 | 38.462 | 0.00 | 0.00 | 46.46 | 3.57 |
379 | 384 | 5.088739 | CGTGAAGTTACGAAGGTTATACGT | 58.911 | 41.667 | 0.00 | 0.00 | 46.46 | 3.57 |
380 | 385 | 5.088739 | ACGTGAAGTTACGAAGGTTATACG | 58.911 | 41.667 | 5.23 | 0.00 | 46.46 | 3.06 |
381 | 386 | 6.688813 | CCTACGTGAAGTTACGAAGGTTATAC | 59.311 | 42.308 | 0.00 | 0.00 | 46.46 | 1.47 |
382 | 387 | 6.374333 | ACCTACGTGAAGTTACGAAGGTTATA | 59.626 | 38.462 | 0.00 | 0.00 | 46.46 | 0.98 |
383 | 388 | 5.183904 | ACCTACGTGAAGTTACGAAGGTTAT | 59.816 | 40.000 | 0.00 | 0.00 | 46.46 | 1.89 |
384 | 389 | 4.518970 | ACCTACGTGAAGTTACGAAGGTTA | 59.481 | 41.667 | 0.00 | 0.00 | 46.46 | 2.85 |
385 | 390 | 3.319122 | ACCTACGTGAAGTTACGAAGGTT | 59.681 | 43.478 | 0.00 | 0.00 | 46.46 | 3.50 |
386 | 391 | 2.887152 | ACCTACGTGAAGTTACGAAGGT | 59.113 | 45.455 | 0.00 | 0.00 | 46.46 | 3.50 |
387 | 392 | 3.240069 | CACCTACGTGAAGTTACGAAGG | 58.760 | 50.000 | 0.00 | 0.00 | 46.46 | 3.46 |
388 | 393 | 3.893720 | ACACCTACGTGAAGTTACGAAG | 58.106 | 45.455 | 0.00 | 0.00 | 46.46 | 3.79 |
389 | 394 | 3.988379 | ACACCTACGTGAAGTTACGAA | 57.012 | 42.857 | 0.00 | 0.00 | 46.46 | 3.85 |
390 | 395 | 4.314961 | TCTACACCTACGTGAAGTTACGA | 58.685 | 43.478 | 0.00 | 0.00 | 46.46 | 3.43 |
392 | 397 | 9.578439 | AATAATTCTACACCTACGTGAAGTTAC | 57.422 | 33.333 | 0.00 | 0.00 | 43.14 | 2.50 |
393 | 398 | 9.577110 | CAATAATTCTACACCTACGTGAAGTTA | 57.423 | 33.333 | 0.00 | 0.00 | 43.14 | 2.24 |
394 | 399 | 7.064253 | GCAATAATTCTACACCTACGTGAAGTT | 59.936 | 37.037 | 0.00 | 0.00 | 43.14 | 2.66 |
395 | 400 | 6.534079 | GCAATAATTCTACACCTACGTGAAGT | 59.466 | 38.462 | 0.00 | 0.00 | 43.14 | 3.01 |
396 | 401 | 6.757010 | AGCAATAATTCTACACCTACGTGAAG | 59.243 | 38.462 | 0.00 | 0.00 | 43.14 | 3.02 |
397 | 402 | 6.636705 | AGCAATAATTCTACACCTACGTGAA | 58.363 | 36.000 | 0.00 | 0.00 | 43.14 | 3.18 |
398 | 403 | 6.216801 | AGCAATAATTCTACACCTACGTGA | 57.783 | 37.500 | 0.00 | 0.00 | 43.14 | 4.35 |
399 | 404 | 5.173312 | CGAGCAATAATTCTACACCTACGTG | 59.827 | 44.000 | 0.00 | 0.00 | 46.11 | 4.49 |
400 | 405 | 5.066893 | TCGAGCAATAATTCTACACCTACGT | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
401 | 406 | 5.516996 | TCGAGCAATAATTCTACACCTACG | 58.483 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
402 | 407 | 7.948278 | ATTCGAGCAATAATTCTACACCTAC | 57.052 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
404 | 409 | 8.993121 | CATAATTCGAGCAATAATTCTACACCT | 58.007 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
405 | 410 | 7.746475 | GCATAATTCGAGCAATAATTCTACACC | 59.254 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
406 | 411 | 8.282592 | TGCATAATTCGAGCAATAATTCTACAC | 58.717 | 33.333 | 0.00 | 0.00 | 34.97 | 2.90 |
407 | 412 | 8.376889 | TGCATAATTCGAGCAATAATTCTACA | 57.623 | 30.769 | 0.00 | 0.00 | 34.97 | 2.74 |
408 | 413 | 8.712363 | TCTGCATAATTCGAGCAATAATTCTAC | 58.288 | 33.333 | 0.00 | 0.00 | 37.89 | 2.59 |
409 | 414 | 8.831715 | TCTGCATAATTCGAGCAATAATTCTA | 57.168 | 30.769 | 0.00 | 0.00 | 37.89 | 2.10 |
410 | 415 | 7.734924 | TCTGCATAATTCGAGCAATAATTCT | 57.265 | 32.000 | 0.00 | 0.00 | 37.89 | 2.40 |
411 | 416 | 7.857389 | TGTTCTGCATAATTCGAGCAATAATTC | 59.143 | 33.333 | 0.00 | 0.00 | 37.89 | 2.17 |
412 | 417 | 7.706159 | TGTTCTGCATAATTCGAGCAATAATT | 58.294 | 30.769 | 0.00 | 0.00 | 37.89 | 1.40 |
413 | 418 | 7.263100 | TGTTCTGCATAATTCGAGCAATAAT | 57.737 | 32.000 | 0.00 | 0.00 | 37.89 | 1.28 |
414 | 419 | 6.676237 | TGTTCTGCATAATTCGAGCAATAA | 57.324 | 33.333 | 0.00 | 0.00 | 37.89 | 1.40 |
415 | 420 | 6.866010 | ATGTTCTGCATAATTCGAGCAATA | 57.134 | 33.333 | 0.00 | 0.00 | 37.89 | 1.90 |
416 | 421 | 5.762825 | ATGTTCTGCATAATTCGAGCAAT | 57.237 | 34.783 | 0.00 | 0.00 | 37.89 | 3.56 |
417 | 422 | 5.565592 | AATGTTCTGCATAATTCGAGCAA | 57.434 | 34.783 | 0.00 | 0.00 | 37.89 | 3.91 |
418 | 423 | 5.565592 | AAATGTTCTGCATAATTCGAGCA | 57.434 | 34.783 | 0.00 | 0.00 | 36.67 | 4.26 |
419 | 424 | 5.276067 | GCAAAATGTTCTGCATAATTCGAGC | 60.276 | 40.000 | 0.00 | 0.00 | 38.48 | 5.03 |
431 | 436 | 2.033299 | ACGGACACAGCAAAATGTTCTG | 59.967 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
437 | 442 | 1.608590 | CTCCAACGGACACAGCAAAAT | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
439 | 444 | 0.179234 | TCTCCAACGGACACAGCAAA | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
463 | 468 | 4.218417 | AGAAAATACTGACTGCGGCAAAAT | 59.782 | 37.500 | 3.44 | 0.00 | 0.00 | 1.82 |
468 | 473 | 4.786609 | GCATTAGAAAATACTGACTGCGGC | 60.787 | 45.833 | 0.00 | 0.00 | 0.00 | 6.53 |
471 | 476 | 6.314896 | ACTCTGCATTAGAAAATACTGACTGC | 59.685 | 38.462 | 3.38 | 0.00 | 34.32 | 4.40 |
474 | 479 | 8.198109 | TCCTACTCTGCATTAGAAAATACTGAC | 58.802 | 37.037 | 3.38 | 0.00 | 34.32 | 3.51 |
485 | 490 | 6.348132 | CGACTCACTATCCTACTCTGCATTAG | 60.348 | 46.154 | 0.00 | 0.00 | 0.00 | 1.73 |
486 | 491 | 5.470437 | CGACTCACTATCCTACTCTGCATTA | 59.530 | 44.000 | 0.00 | 0.00 | 0.00 | 1.90 |
487 | 492 | 4.277174 | CGACTCACTATCCTACTCTGCATT | 59.723 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
496 | 501 | 4.597004 | AGTTCAACCGACTCACTATCCTA | 58.403 | 43.478 | 0.00 | 0.00 | 0.00 | 2.94 |
507 | 512 | 0.307760 | CTGGTGCAAGTTCAACCGAC | 59.692 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
516 | 521 | 0.472734 | ACTCTCTCCCTGGTGCAAGT | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
531 | 551 | 0.941463 | CTTGAACGAGCGTGCACTCT | 60.941 | 55.000 | 16.19 | 13.02 | 32.55 | 3.24 |
581 | 608 | 2.678836 | TGACGTGTTACCAACCAAACTG | 59.321 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
594 | 627 | 0.249699 | TCGCCTTGACATGACGTGTT | 60.250 | 50.000 | 0.00 | 0.00 | 42.36 | 3.32 |
644 | 677 | 0.813610 | CGCATCCACGGGAATTGCTA | 60.814 | 55.000 | 13.27 | 0.00 | 36.06 | 3.49 |
661 | 694 | 1.058057 | GTTTCGTGACGCCAATTCGC | 61.058 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
705 | 940 | 0.608035 | GGGAGCGTCCAATTTGACCA | 60.608 | 55.000 | 4.21 | 0.00 | 38.64 | 4.02 |
761 | 1010 | 2.177580 | CCTTGTGTTGTCGCGGTGT | 61.178 | 57.895 | 6.13 | 0.00 | 0.00 | 4.16 |
784 | 1033 | 1.253593 | TGAGTGTGAGATCAGCCGCT | 61.254 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
813 | 1062 | 2.233922 | GTGGAGAATGAGAACGGAGGAA | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
814 | 1063 | 1.825474 | GTGGAGAATGAGAACGGAGGA | 59.175 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
841 | 1090 | 4.731612 | CTCGTCAGCAGCGGCACT | 62.732 | 66.667 | 12.44 | 0.00 | 44.61 | 4.40 |
846 | 1095 | 3.168604 | CGTCACTCGTCAGCAGCG | 61.169 | 66.667 | 0.00 | 0.00 | 34.52 | 5.18 |
895 | 1144 | 1.074319 | GGATTTGTACTCGCGTGCGA | 61.074 | 55.000 | 16.78 | 16.78 | 46.87 | 5.10 |
916 | 1165 | 0.968393 | GCGAGGAGGTTCTCAGGTCT | 60.968 | 60.000 | 0.00 | 0.00 | 33.59 | 3.85 |
979 | 1240 | 2.818274 | CCCGCTTCAGTTACCGCC | 60.818 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1077 | 1344 | 4.388499 | TTGCCCTCCTTCGCCGTC | 62.388 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1078 | 1345 | 4.394712 | CTTGCCCTCCTTCGCCGT | 62.395 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1343 | 1613 | 1.339824 | CCACCTGATGCTTCTTCTGCT | 60.340 | 52.381 | 0.88 | 0.00 | 0.00 | 4.24 |
1373 | 1643 | 2.759973 | CCTGCACCTCCGGCTCTA | 60.760 | 66.667 | 0.00 | 0.00 | 0.00 | 2.43 |
1378 | 1648 | 3.775654 | GTCTCCCTGCACCTCCGG | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 5.14 |
1379 | 1649 | 4.135153 | CGTCTCCCTGCACCTCCG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
1380 | 1650 | 4.459089 | GCGTCTCCCTGCACCTCC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1381 | 1651 | 4.459089 | GGCGTCTCCCTGCACCTC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
1430 | 1700 | 0.325272 | ACCCCGCTTCTTCTTCTTCC | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1444 | 1723 | 1.026718 | GCCTTGAAGATGTGACCCCG | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1482 | 1761 | 8.826710 | TGTTGACTAGACTAAACATGTTTGAAG | 58.173 | 33.333 | 29.72 | 22.57 | 34.23 | 3.02 |
1494 | 1773 | 7.291411 | AGAAGCTTCTTGTTGACTAGACTAA | 57.709 | 36.000 | 23.49 | 0.00 | 32.55 | 2.24 |
1552 | 1836 | 6.603201 | AGACAAGAACAAGATCCAAAACAGAA | 59.397 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
1608 | 1895 | 3.066064 | CCATGTTCAAGTCAACGAAACCA | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
1611 | 1898 | 3.314080 | GTCCCATGTTCAAGTCAACGAAA | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
1635 | 1922 | 1.459592 | GACGCAGAAATACAGCAACGT | 59.540 | 47.619 | 0.00 | 0.00 | 34.85 | 3.99 |
1809 | 2119 | 4.811557 | CGAGTCAAATTTCATCTAGGGACC | 59.188 | 45.833 | 0.00 | 0.00 | 0.00 | 4.46 |
1826 | 2138 | 0.106708 | ACCTTTTGAGCTGCGAGTCA | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1847 | 2159 | 2.936202 | TCTGCTTGCTTGAAGAAACCT | 58.064 | 42.857 | 0.00 | 0.00 | 32.82 | 3.50 |
1849 | 2161 | 4.298744 | ACTTCTGCTTGCTTGAAGAAAC | 57.701 | 40.909 | 23.65 | 0.00 | 39.42 | 2.78 |
1851 | 2163 | 4.989279 | AAACTTCTGCTTGCTTGAAGAA | 57.011 | 36.364 | 23.65 | 11.89 | 39.42 | 2.52 |
1852 | 2164 | 4.398988 | TCAAAACTTCTGCTTGCTTGAAGA | 59.601 | 37.500 | 23.65 | 6.23 | 39.42 | 2.87 |
1853 | 2165 | 4.675510 | TCAAAACTTCTGCTTGCTTGAAG | 58.324 | 39.130 | 18.92 | 18.92 | 41.87 | 3.02 |
1854 | 2166 | 4.717233 | TCAAAACTTCTGCTTGCTTGAA | 57.283 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
1855 | 2167 | 4.098349 | ACATCAAAACTTCTGCTTGCTTGA | 59.902 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1856 | 2168 | 4.208460 | CACATCAAAACTTCTGCTTGCTTG | 59.792 | 41.667 | 0.00 | 0.00 | 0.00 | 4.01 |
1857 | 2169 | 4.098349 | TCACATCAAAACTTCTGCTTGCTT | 59.902 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
1858 | 2170 | 3.633525 | TCACATCAAAACTTCTGCTTGCT | 59.366 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
1859 | 2171 | 3.968649 | TCACATCAAAACTTCTGCTTGC | 58.031 | 40.909 | 0.00 | 0.00 | 0.00 | 4.01 |
1881 | 2193 | 0.905357 | AAGTCCGGCTGTAGATGCTT | 59.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1895 | 2207 | 2.014857 | GGAGCCGGATTTGTTAAGTCC | 58.985 | 52.381 | 5.05 | 0.00 | 0.00 | 3.85 |
1901 | 2213 | 1.886542 | GTTTGAGGAGCCGGATTTGTT | 59.113 | 47.619 | 5.05 | 0.00 | 0.00 | 2.83 |
1917 | 2229 | 1.593196 | ATCTGTGTCACGGGTGTTTG | 58.407 | 50.000 | 11.94 | 0.00 | 0.00 | 2.93 |
1921 | 2233 | 0.034756 | TCCAATCTGTGTCACGGGTG | 59.965 | 55.000 | 11.94 | 10.01 | 0.00 | 4.61 |
1922 | 2234 | 0.034896 | GTCCAATCTGTGTCACGGGT | 59.965 | 55.000 | 11.94 | 1.18 | 0.00 | 5.28 |
1949 | 2261 | 1.064134 | TGTGATCCGTCGATGCTCG | 59.936 | 57.895 | 0.00 | 0.00 | 42.10 | 5.03 |
1950 | 2262 | 0.872021 | GGTGTGATCCGTCGATGCTC | 60.872 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1951 | 2263 | 1.141881 | GGTGTGATCCGTCGATGCT | 59.858 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
1952 | 2264 | 0.460284 | AAGGTGTGATCCGTCGATGC | 60.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1953 | 2265 | 1.280982 | CAAGGTGTGATCCGTCGATG | 58.719 | 55.000 | 0.00 | 0.00 | 0.00 | 3.84 |
1954 | 2266 | 0.895530 | ACAAGGTGTGATCCGTCGAT | 59.104 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1955 | 2267 | 1.536940 | TACAAGGTGTGATCCGTCGA | 58.463 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1956 | 2268 | 2.579207 | ATACAAGGTGTGATCCGTCG | 57.421 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1957 | 2269 | 4.250464 | TCAAATACAAGGTGTGATCCGTC | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
1958 | 2270 | 4.280436 | TCAAATACAAGGTGTGATCCGT | 57.720 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
1959 | 2271 | 4.496341 | GCATCAAATACAAGGTGTGATCCG | 60.496 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
1960 | 2272 | 4.641989 | AGCATCAAATACAAGGTGTGATCC | 59.358 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1961 | 2273 | 5.824904 | AGCATCAAATACAAGGTGTGATC | 57.175 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1962 | 2274 | 6.183360 | GCTTAGCATCAAATACAAGGTGTGAT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
1963 | 2275 | 5.123820 | GCTTAGCATCAAATACAAGGTGTGA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1964 | 2276 | 5.106197 | TGCTTAGCATCAAATACAAGGTGTG | 60.106 | 40.000 | 1.39 | 0.00 | 31.71 | 3.82 |
1965 | 2277 | 5.009631 | TGCTTAGCATCAAATACAAGGTGT | 58.990 | 37.500 | 1.39 | 0.00 | 31.71 | 4.16 |
1966 | 2278 | 5.565592 | TGCTTAGCATCAAATACAAGGTG | 57.434 | 39.130 | 1.39 | 0.00 | 31.71 | 4.00 |
2046 | 2360 | 6.294787 | GCTAGCATGGTGTACAGAGTACATAT | 60.295 | 42.308 | 10.63 | 8.23 | 0.00 | 1.78 |
2141 | 2455 | 1.007238 | TGAAGAGGAGTCGGATCCCTT | 59.993 | 52.381 | 6.06 | 1.17 | 40.53 | 3.95 |
2200 | 2514 | 0.901827 | TACAAGATGCAGAGGCGGAA | 59.098 | 50.000 | 0.00 | 0.00 | 45.35 | 4.30 |
2215 | 2529 | 2.625790 | GGCCAAACACCATTGTCTACAA | 59.374 | 45.455 | 0.00 | 0.00 | 40.51 | 2.41 |
2238 | 2552 | 2.125832 | GGTCGGAATCAACGGCGA | 60.126 | 61.111 | 16.62 | 0.00 | 36.69 | 5.54 |
2244 | 2558 | 1.552578 | TTCTCTCCGGTCGGAATCAA | 58.447 | 50.000 | 13.36 | 3.49 | 44.66 | 2.57 |
2287 | 2601 | 0.963355 | TTGGGGCTACGGATTTGCAC | 60.963 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2298 | 2612 | 3.324108 | GTGGGGACGTTGGGGCTA | 61.324 | 66.667 | 0.00 | 0.00 | 0.00 | 3.93 |
2310 | 2624 | 2.347490 | CACAAGGAGGACGTGGGG | 59.653 | 66.667 | 0.00 | 0.00 | 32.45 | 4.96 |
2343 | 2657 | 1.221909 | TGGTGGGAGAGGAGGAGCTA | 61.222 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2366 | 2683 | 0.252284 | GGACTTGGAGGTGGAGGAGA | 60.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2395 | 2712 | 0.462047 | CTACCTTCGGATGTGGTGGC | 60.462 | 60.000 | 7.73 | 0.00 | 35.48 | 5.01 |
2471 | 2788 | 1.324740 | ATACCTAACGCCAGACCGCA | 61.325 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2478 | 2795 | 1.863325 | TGTACCCATACCTAACGCCA | 58.137 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.