Multiple sequence alignment - TraesCS3B01G419800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G419800 chr3B 100.000 3883 0 0 1 3883 656289121 656293003 0.000000e+00 7171.0
1 TraesCS3B01G419800 chr3A 89.666 2516 143 40 551 3037 638027692 638030119 0.000000e+00 3097.0
2 TraesCS3B01G419800 chr3A 89.695 524 45 8 4 524 638027176 638027693 0.000000e+00 660.0
3 TraesCS3B01G419800 chr3A 92.208 154 11 1 3534 3686 638030578 638030731 2.350000e-52 217.0
4 TraesCS3B01G419800 chr3A 75.271 461 78 22 3084 3532 733487515 733487079 1.840000e-43 187.0
5 TraesCS3B01G419800 chr3D 88.989 2443 146 57 548 2936 496785620 496787993 0.000000e+00 2907.0
6 TraesCS3B01G419800 chr3D 92.267 569 34 7 3 565 496785047 496785611 0.000000e+00 798.0
7 TraesCS3B01G419800 chr3D 82.335 668 78 17 3019 3684 496794261 496794890 9.490000e-151 544.0
8 TraesCS3B01G419800 chr3D 97.990 199 2 2 3685 3883 42097512 42097708 1.030000e-90 344.0
9 TraesCS3B01G419800 chr3D 75.439 285 56 11 3111 3385 11767754 11768034 4.070000e-25 126.0
10 TraesCS3B01G419800 chr3D 83.898 118 16 3 3564 3680 394612908 394613023 4.100000e-20 110.0
11 TraesCS3B01G419800 chr4D 97.512 201 4 1 3683 3883 20926911 20927110 3.710000e-90 342.0
12 TraesCS3B01G419800 chr4D 83.051 118 17 3 3564 3680 483478257 483478142 1.910000e-18 104.0
13 TraesCS3B01G419800 chr7D 96.602 206 5 2 3678 3883 402138074 402138277 1.340000e-89 340.0
14 TraesCS3B01G419800 chr7D 97.487 199 4 1 3685 3883 134793609 134793806 4.810000e-89 339.0
15 TraesCS3B01G419800 chr7D 96.569 204 5 2 3681 3883 438757772 438757974 1.730000e-88 337.0
16 TraesCS3B01G419800 chr7D 80.755 265 49 2 3257 3520 519404722 519404985 5.090000e-49 206.0
17 TraesCS3B01G419800 chr7D 83.898 118 16 3 3564 3680 46912544 46912659 4.100000e-20 110.0
18 TraesCS3B01G419800 chr6D 97.487 199 4 1 3685 3883 308781080 308780883 4.810000e-89 339.0
19 TraesCS3B01G419800 chr6D 88.136 59 7 0 3181 3239 158788555 158788613 1.940000e-08 71.3
20 TraesCS3B01G419800 chr1D 97.030 202 5 1 3682 3883 356351907 356352107 4.810000e-89 339.0
21 TraesCS3B01G419800 chr1D 86.131 274 28 8 1774 2046 363250893 363250629 1.770000e-73 287.0
22 TraesCS3B01G419800 chr1D 85.340 191 23 5 1471 1660 363251082 363250896 3.960000e-45 193.0
23 TraesCS3B01G419800 chr1D 83.898 118 16 3 3564 3680 6633650 6633535 4.100000e-20 110.0
24 TraesCS3B01G419800 chr1D 72.800 375 80 14 3007 3370 478341631 478341994 1.480000e-19 108.0
25 TraesCS3B01G419800 chr5B 96.117 206 6 2 3679 3883 454409494 454409698 6.220000e-88 335.0
26 TraesCS3B01G419800 chr2D 95.238 210 6 3 3674 3883 111565239 111565034 2.890000e-86 329.0
27 TraesCS3B01G419800 chr2D 83.051 118 17 3 3564 3680 589700571 589700686 1.910000e-18 104.0
28 TraesCS3B01G419800 chr2D 73.704 270 62 6 3169 3429 23467222 23467491 3.190000e-16 97.1
29 TraesCS3B01G419800 chr1B 85.764 288 29 10 1774 2059 486489671 486489394 1.060000e-75 294.0
30 TraesCS3B01G419800 chr1B 84.817 191 24 4 1471 1660 486489860 486489674 1.840000e-43 187.0
31 TraesCS3B01G419800 chr1B 75.836 269 46 12 3264 3523 149531557 149531815 6.820000e-23 119.0
32 TraesCS3B01G419800 chr1B 77.184 206 39 4 3169 3366 493242415 493242210 3.170000e-21 113.0
33 TraesCS3B01G419800 chr1A 85.818 275 29 8 1774 2047 462401088 462400823 2.280000e-72 283.0
34 TraesCS3B01G419800 chr1A 85.340 191 23 4 1471 1660 462401277 462401091 3.960000e-45 193.0
35 TraesCS3B01G419800 chr6A 78.231 441 68 16 3121 3539 614827909 614827475 1.380000e-64 257.0
36 TraesCS3B01G419800 chr6A 78.005 441 69 16 3121 3539 614826544 614826110 6.440000e-63 252.0
37 TraesCS3B01G419800 chr6A 77.778 441 70 15 3121 3539 614825179 614824745 3.000000e-61 246.0
38 TraesCS3B01G419800 chr6A 77.778 441 70 16 3121 3539 614829274 614828840 3.000000e-61 246.0
39 TraesCS3B01G419800 chr4B 75.172 435 77 21 3116 3537 76634151 76634567 3.990000e-40 176.0
40 TraesCS3B01G419800 chr7A 78.327 263 42 12 3264 3519 6779368 6779114 5.190000e-34 156.0
41 TraesCS3B01G419800 chr7A 100.000 28 0 0 3202 3229 516073370 516073397 7.000000e-03 52.8
42 TraesCS3B01G419800 chr7B 83.193 119 15 5 3564 3680 220299918 220300033 1.910000e-18 104.0
43 TraesCS3B01G419800 chr6B 79.333 150 25 6 3534 3680 507660588 507660734 2.470000e-17 100.0
44 TraesCS3B01G419800 chrUn 73.661 224 47 8 3173 3385 326756058 326756280 4.160000e-10 76.8
45 TraesCS3B01G419800 chrUn 73.661 224 47 8 3173 3385 447059843 447059621 4.160000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G419800 chr3B 656289121 656293003 3882 False 7171.000000 7171 100.000 1 3883 1 chr3B.!!$F1 3882
1 TraesCS3B01G419800 chr3A 638027176 638030731 3555 False 1324.666667 3097 90.523 4 3686 3 chr3A.!!$F1 3682
2 TraesCS3B01G419800 chr3D 496785047 496787993 2946 False 1852.500000 2907 90.628 3 2936 2 chr3D.!!$F5 2933
3 TraesCS3B01G419800 chr3D 496794261 496794890 629 False 544.000000 544 82.335 3019 3684 1 chr3D.!!$F4 665
4 TraesCS3B01G419800 chr6A 614824745 614829274 4529 True 250.250000 257 77.948 3121 3539 4 chr6A.!!$R1 418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 769 0.877071 AGGCACAGTTCGAAATGCAG 59.123 50.0 24.26 17.83 39.92 4.41 F
1418 1483 0.177836 CCGTCCACCATGCATGTAGA 59.822 55.0 24.58 14.91 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2035 0.030908 CGGTGGCGAAGTAGATCCTC 59.969 60.0 0.00 0.0 0.0 3.71 R
3339 4910 0.179084 CTGTCTGACGTTGTGGTGGT 60.179 55.0 2.98 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.474313 TTTGTAGGTATGCTTCCATCTAAAAAT 57.526 29.630 0.00 0.00 32.85 1.82
84 85 4.582240 GGAAAAGAATATCCCCTTGCAGAG 59.418 45.833 0.00 0.00 0.00 3.35
88 89 4.820775 AGAATATCCCCTTGCAGAGACTA 58.179 43.478 0.00 0.00 0.00 2.59
91 93 3.922171 ATCCCCTTGCAGAGACTAAAG 57.078 47.619 0.00 0.00 0.00 1.85
96 98 2.746362 CCTTGCAGAGACTAAAGGCTTG 59.254 50.000 0.00 0.00 33.28 4.01
97 99 3.406764 CTTGCAGAGACTAAAGGCTTGT 58.593 45.455 0.00 0.00 0.00 3.16
109 111 9.384764 AGACTAAAGGCTTGTGTATTATCTTTC 57.615 33.333 0.00 0.00 0.00 2.62
111 113 6.436843 AAAGGCTTGTGTATTATCTTTCCG 57.563 37.500 0.00 0.00 0.00 4.30
117 119 6.508088 GCTTGTGTATTATCTTTCCGTTCTCG 60.508 42.308 0.00 0.00 0.00 4.04
127 129 2.230940 CCGTTCTCGCAGCATACCG 61.231 63.158 0.00 0.00 35.54 4.02
131 133 1.600511 TTCTCGCAGCATACCGGTCA 61.601 55.000 12.40 0.00 0.00 4.02
155 157 3.773860 TTGCAATGTATTGGCGGTTAG 57.226 42.857 0.00 0.00 38.21 2.34
176 178 2.096218 GCAGAAGTGTGCTTAGGAAACG 60.096 50.000 0.00 0.00 40.54 3.60
181 183 3.508762 AGTGTGCTTAGGAAACGTATCG 58.491 45.455 0.00 0.00 0.00 2.92
186 188 3.243636 TGCTTAGGAAACGTATCGGATCC 60.244 47.826 0.00 0.00 36.47 3.36
187 189 3.243636 GCTTAGGAAACGTATCGGATCCA 60.244 47.826 13.41 0.00 37.89 3.41
188 190 4.560919 GCTTAGGAAACGTATCGGATCCAT 60.561 45.833 13.41 7.21 37.89 3.41
189 191 3.662247 AGGAAACGTATCGGATCCATC 57.338 47.619 13.41 0.00 37.89 3.51
190 192 3.231818 AGGAAACGTATCGGATCCATCT 58.768 45.455 13.41 0.00 37.89 2.90
231 233 2.959516 TGCAGTCGTATGTTGAAGGAG 58.040 47.619 0.00 0.00 0.00 3.69
347 354 3.859745 AATACGAGCGCATACAATGTG 57.140 42.857 11.47 0.00 43.42 3.21
509 519 1.859080 GAGCTAGTTTTATCCGTGGCG 59.141 52.381 0.00 0.00 0.00 5.69
646 682 2.577112 CGTACTGCGACTCAGCCG 60.577 66.667 0.00 0.00 46.76 5.52
724 760 0.947244 CCACAGTCAAGGCACAGTTC 59.053 55.000 0.00 0.00 0.00 3.01
733 769 0.877071 AGGCACAGTTCGAAATGCAG 59.123 50.000 24.26 17.83 39.92 4.41
929 978 2.280592 ACCTCGTTCAACGGGTGC 60.281 61.111 18.75 0.00 41.30 5.01
930 979 3.047877 CCTCGTTCAACGGGTGCC 61.048 66.667 9.43 0.00 41.30 5.01
931 980 3.047877 CTCGTTCAACGGGTGCCC 61.048 66.667 10.69 0.00 42.81 5.36
932 981 3.818121 CTCGTTCAACGGGTGCCCA 62.818 63.158 10.69 0.00 42.81 5.36
933 982 2.902846 CGTTCAACGGGTGCCCAA 60.903 61.111 0.61 0.00 38.08 4.12
1062 1114 3.486542 GCTAGTTGCTGAACTAATGCTGC 60.487 47.826 0.00 0.00 42.82 5.25
1067 1119 2.290514 TGCTGAACTAATGCTGCTTCCT 60.291 45.455 0.00 0.00 0.00 3.36
1074 1126 1.538687 AATGCTGCTTCCTTGTGGCC 61.539 55.000 0.00 0.00 0.00 5.36
1093 1145 1.632422 CAAACTGATCATTTGCGGGC 58.368 50.000 13.83 0.00 30.77 6.13
1283 1341 1.609320 GGTGAACAAGACCTCTGCTCC 60.609 57.143 0.00 0.00 0.00 4.70
1284 1342 0.687354 TGAACAAGACCTCTGCTCCC 59.313 55.000 0.00 0.00 0.00 4.30
1285 1343 0.980423 GAACAAGACCTCTGCTCCCT 59.020 55.000 0.00 0.00 0.00 4.20
1343 1401 2.081161 GGGAGAGGCATGACCCCAT 61.081 63.158 6.50 0.00 40.58 4.00
1392 1450 1.135689 CACCACGCAATTCAGTAAGCC 60.136 52.381 0.00 0.00 0.00 4.35
1417 1482 1.439353 GCCGTCCACCATGCATGTAG 61.439 60.000 24.58 15.89 0.00 2.74
1418 1483 0.177836 CCGTCCACCATGCATGTAGA 59.822 55.000 24.58 14.91 0.00 2.59
1497 1562 1.671379 GGACAAGGCGGTGTCTTCC 60.671 63.158 19.35 5.03 45.98 3.46
1590 1655 2.846371 CCTTCAGAAGGCCTTCGTG 58.154 57.895 34.27 29.79 42.78 4.35
1691 1763 1.830279 CATGTCATGCACTTGGGACT 58.170 50.000 0.00 0.00 0.00 3.85
1692 1764 2.165167 CATGTCATGCACTTGGGACTT 58.835 47.619 0.00 0.00 0.00 3.01
1694 1766 0.883833 GTCATGCACTTGGGACTTGG 59.116 55.000 0.00 0.00 0.00 3.61
1696 1768 1.607467 ATGCACTTGGGACTTGGCC 60.607 57.895 0.00 0.00 0.00 5.36
1697 1769 2.085343 ATGCACTTGGGACTTGGCCT 62.085 55.000 3.32 0.00 0.00 5.19
1698 1770 1.531602 GCACTTGGGACTTGGCCTT 60.532 57.895 3.32 0.00 0.00 4.35
1699 1771 1.809567 GCACTTGGGACTTGGCCTTG 61.810 60.000 3.32 0.00 0.00 3.61
1700 1772 1.153756 ACTTGGGACTTGGCCTTGG 59.846 57.895 3.32 0.00 0.00 3.61
1701 1773 2.203625 TTGGGACTTGGCCTTGGC 60.204 61.111 3.32 2.49 0.00 4.52
1702 1774 3.080158 TTGGGACTTGGCCTTGGCA 62.080 57.895 14.04 0.00 35.98 4.92
1703 1775 2.991540 GGGACTTGGCCTTGGCAC 60.992 66.667 14.04 0.00 37.98 5.01
1704 1776 2.116125 GGACTTGGCCTTGGCACT 59.884 61.111 14.04 0.00 37.98 4.40
1705 1777 1.531602 GGACTTGGCCTTGGCACTT 60.532 57.895 14.04 0.00 37.98 3.16
1742 1814 5.989249 TGCAGCAACGAATTATATCATGTC 58.011 37.500 0.00 0.00 0.00 3.06
1746 1818 8.446273 GCAGCAACGAATTATATCATGTCTAAT 58.554 33.333 0.00 0.00 0.00 1.73
1788 1865 0.978146 TGTAGGGGAGAAGCTGAGGC 60.978 60.000 0.00 0.00 39.06 4.70
1832 1909 2.202703 GTCCGGTTCGTGATCGGG 60.203 66.667 0.00 5.56 43.54 5.14
1958 2035 1.153939 CGAGCTGTCCTCCAAGACG 60.154 63.158 0.00 0.00 39.77 4.18
2076 2162 1.081840 GTGCAGCTTTGCGTTCCTC 60.082 57.895 0.00 0.00 37.69 3.71
2077 2163 1.525765 TGCAGCTTTGCGTTCCTCA 60.526 52.632 0.00 0.00 37.69 3.86
2078 2164 0.890542 TGCAGCTTTGCGTTCCTCAT 60.891 50.000 0.00 0.00 37.69 2.90
2079 2165 0.242017 GCAGCTTTGCGTTCCTCATT 59.758 50.000 0.00 0.00 0.00 2.57
2080 2166 1.468520 GCAGCTTTGCGTTCCTCATTA 59.531 47.619 0.00 0.00 0.00 1.90
2081 2167 2.098117 GCAGCTTTGCGTTCCTCATTAT 59.902 45.455 0.00 0.00 0.00 1.28
2082 2168 3.790123 GCAGCTTTGCGTTCCTCATTATC 60.790 47.826 0.00 0.00 0.00 1.75
2083 2169 2.609459 AGCTTTGCGTTCCTCATTATCG 59.391 45.455 0.00 0.00 0.00 2.92
2084 2170 2.607635 GCTTTGCGTTCCTCATTATCGA 59.392 45.455 0.00 0.00 0.00 3.59
2090 2176 3.487574 GCGTTCCTCATTATCGAGTTGAG 59.512 47.826 12.65 12.65 37.27 3.02
2129 2215 5.607119 TTGACCGTTTCTGCTCTTTAATC 57.393 39.130 0.00 0.00 0.00 1.75
2203 2289 1.446792 CGTCGGCTGCATGAAGTCT 60.447 57.895 3.22 0.00 0.00 3.24
2218 2304 1.915769 GTCTGGGCCTGTCCTGTCT 60.916 63.158 4.53 0.00 34.39 3.41
2226 2312 1.879796 GCCTGTCCTGTCTCAAAGGTG 60.880 57.143 0.00 0.00 36.14 4.00
2227 2313 1.271054 CCTGTCCTGTCTCAAAGGTGG 60.271 57.143 0.00 0.00 36.14 4.61
2228 2314 0.108585 TGTCCTGTCTCAAAGGTGGC 59.891 55.000 0.00 0.00 36.14 5.01
2230 2316 0.108585 TCCTGTCTCAAAGGTGGCAC 59.891 55.000 9.70 9.70 36.14 5.01
2231 2317 0.890996 CCTGTCTCAAAGGTGGCACC 60.891 60.000 29.32 29.32 38.99 5.01
2232 2318 0.890996 CTGTCTCAAAGGTGGCACCC 60.891 60.000 32.30 15.85 39.75 4.61
2233 2319 1.966451 GTCTCAAAGGTGGCACCCG 60.966 63.158 32.30 20.92 39.75 5.28
2234 2320 2.144078 TCTCAAAGGTGGCACCCGA 61.144 57.895 32.30 23.73 39.75 5.14
2235 2321 1.672356 CTCAAAGGTGGCACCCGAG 60.672 63.158 32.30 28.05 39.75 4.63
2236 2322 3.365265 CAAAGGTGGCACCCGAGC 61.365 66.667 32.30 7.94 39.75 5.03
2244 2330 3.680156 GCACCCGAGCCAAAATCA 58.320 55.556 0.00 0.00 0.00 2.57
2245 2331 2.192605 GCACCCGAGCCAAAATCAT 58.807 52.632 0.00 0.00 0.00 2.45
2246 2332 0.179129 GCACCCGAGCCAAAATCATG 60.179 55.000 0.00 0.00 0.00 3.07
2248 2334 0.611618 ACCCGAGCCAAAATCATGCA 60.612 50.000 0.00 0.00 0.00 3.96
2249 2335 0.179129 CCCGAGCCAAAATCATGCAC 60.179 55.000 0.00 0.00 0.00 4.57
2250 2336 0.179129 CCGAGCCAAAATCATGCACC 60.179 55.000 0.00 0.00 0.00 5.01
2251 2337 0.527113 CGAGCCAAAATCATGCACCA 59.473 50.000 0.00 0.00 0.00 4.17
2252 2338 1.067706 CGAGCCAAAATCATGCACCAA 60.068 47.619 0.00 0.00 0.00 3.67
2254 2340 2.738314 GAGCCAAAATCATGCACCAAAC 59.262 45.455 0.00 0.00 0.00 2.93
2264 2350 0.457851 TGCACCAAACAAAACTCGGG 59.542 50.000 0.00 0.00 0.00 5.14
2265 2351 0.249280 GCACCAAACAAAACTCGGGG 60.249 55.000 0.00 0.00 0.00 5.73
2268 2354 1.007849 CAAACAAAACTCGGGGCCG 60.008 57.895 0.00 0.00 41.35 6.13
2269 2355 1.152922 AAACAAAACTCGGGGCCGA 60.153 52.632 0.00 0.00 46.87 5.54
2277 2363 3.642078 TCGGGGCCGATCTGAAAT 58.358 55.556 0.00 0.00 44.01 2.17
2288 2374 3.066342 CCGATCTGAAATTTGCTGCTGAT 59.934 43.478 0.00 0.00 0.00 2.90
2293 2379 6.092955 TCTGAAATTTGCTGCTGATTTTCT 57.907 33.333 12.58 0.00 0.00 2.52
2294 2380 5.924254 TCTGAAATTTGCTGCTGATTTTCTG 59.076 36.000 12.58 14.33 0.00 3.02
2456 2552 3.547746 TCCGTCAACCAGTAAGCTTTTT 58.452 40.909 3.20 0.00 0.00 1.94
2479 2585 5.867903 TTTTTCTTTGGAAGGCAATCTGA 57.132 34.783 0.00 0.00 32.61 3.27
2480 2586 5.867903 TTTTCTTTGGAAGGCAATCTGAA 57.132 34.783 0.00 0.00 32.61 3.02
2481 2587 6.423776 TTTTCTTTGGAAGGCAATCTGAAT 57.576 33.333 0.00 0.00 32.61 2.57
2482 2588 5.395682 TTCTTTGGAAGGCAATCTGAATG 57.604 39.130 0.00 0.00 0.00 2.67
2483 2589 4.410099 TCTTTGGAAGGCAATCTGAATGT 58.590 39.130 0.00 0.00 0.00 2.71
2484 2590 4.219070 TCTTTGGAAGGCAATCTGAATGTG 59.781 41.667 0.00 0.00 0.00 3.21
2485 2591 1.820519 TGGAAGGCAATCTGAATGTGC 59.179 47.619 3.52 3.52 37.55 4.57
2516 2622 0.443869 ACGATGTTTGCATCTGCGAC 59.556 50.000 6.11 0.15 46.96 5.19
2517 2623 0.584785 CGATGTTTGCATCTGCGACG 60.585 55.000 6.11 0.00 46.96 5.12
2665 2771 2.514013 CGCCGAGCCACGAACATAC 61.514 63.158 2.48 0.00 45.77 2.39
2666 2772 1.153628 GCCGAGCCACGAACATACT 60.154 57.895 2.48 0.00 45.77 2.12
2667 2773 1.146358 GCCGAGCCACGAACATACTC 61.146 60.000 2.48 0.00 45.77 2.59
2668 2774 0.527817 CCGAGCCACGAACATACTCC 60.528 60.000 2.48 0.00 45.77 3.85
2669 2775 0.456221 CGAGCCACGAACATACTCCT 59.544 55.000 0.00 0.00 45.77 3.69
2670 2776 1.674441 CGAGCCACGAACATACTCCTA 59.326 52.381 0.00 0.00 45.77 2.94
2690 2796 1.758936 TCGTTCTCTCTTCGCCCATA 58.241 50.000 0.00 0.00 0.00 2.74
2691 2797 1.404391 TCGTTCTCTCTTCGCCCATAC 59.596 52.381 0.00 0.00 0.00 2.39
2692 2798 1.405821 CGTTCTCTCTTCGCCCATACT 59.594 52.381 0.00 0.00 0.00 2.12
2693 2799 2.617308 CGTTCTCTCTTCGCCCATACTA 59.383 50.000 0.00 0.00 0.00 1.82
2709 2820 1.617322 ACTACGAGCTTGTCTGACCA 58.383 50.000 10.71 0.00 0.00 4.02
2712 2823 0.600557 ACGAGCTTGTCTGACCAGAG 59.399 55.000 12.62 5.94 38.27 3.35
2729 2840 2.725815 GCAACAGCCGTGCGTTTC 60.726 61.111 0.00 0.00 0.00 2.78
2941 3055 3.001330 GGCGTGCTGTTTAATGTAGCTAG 59.999 47.826 0.00 0.00 38.25 3.42
2943 3057 4.328983 GCGTGCTGTTTAATGTAGCTAGAA 59.671 41.667 0.00 0.00 38.25 2.10
2967 3081 5.124457 ACTTGATTTGGAATCCGATCACTTG 59.876 40.000 14.98 11.50 31.62 3.16
3004 3125 7.916914 TTTTTAAAGAGAAGGATAACTCGGG 57.083 36.000 0.00 0.00 38.08 5.14
3005 3126 6.616237 TTTAAAGAGAAGGATAACTCGGGT 57.384 37.500 0.00 0.00 38.08 5.28
3008 3129 3.032459 AGAGAAGGATAACTCGGGTTCC 58.968 50.000 2.54 0.00 38.08 3.62
3037 3226 6.482973 TCAAGCGATGCACATAATGATTCTAA 59.517 34.615 0.00 0.00 0.00 2.10
3095 3284 7.428826 ACAAAGATTCACTCAAAATCACCTTC 58.571 34.615 0.00 0.00 35.92 3.46
3099 3289 3.754965 TCACTCAAAATCACCTTCCTGG 58.245 45.455 0.00 0.00 42.93 4.45
3119 3309 2.036733 GGCAACCACAGTCACTACACTA 59.963 50.000 0.00 0.00 0.00 2.74
3124 3314 3.958798 ACCACAGTCACTACACTAACACT 59.041 43.478 0.00 0.00 0.00 3.55
3129 3319 7.145985 CACAGTCACTACACTAACACTTACAT 58.854 38.462 0.00 0.00 0.00 2.29
3145 3335 4.949238 ACTTACATGCTTTATGATGTGCCA 59.051 37.500 0.00 0.00 39.21 4.92
3157 4712 3.656559 TGATGTGCCATGATCTCGTATG 58.343 45.455 0.00 0.00 0.00 2.39
3162 4717 4.940654 TGTGCCATGATCTCGTATGAAAAA 59.059 37.500 0.00 0.00 0.00 1.94
3163 4718 5.163764 TGTGCCATGATCTCGTATGAAAAAC 60.164 40.000 0.00 0.00 0.00 2.43
3164 4719 4.940654 TGCCATGATCTCGTATGAAAAACA 59.059 37.500 0.00 0.00 0.00 2.83
3165 4720 5.589855 TGCCATGATCTCGTATGAAAAACAT 59.410 36.000 0.00 0.00 42.39 2.71
3166 4721 5.911280 GCCATGATCTCGTATGAAAAACATG 59.089 40.000 0.00 0.00 39.77 3.21
3232 4787 0.470766 AGCACCAACCGGTCTAACAA 59.529 50.000 8.04 0.00 44.71 2.83
3239 4794 0.689055 ACCGGTCTAACAAACCCTCC 59.311 55.000 0.00 0.00 32.89 4.30
3247 4803 0.748729 AACAAACCCTCCGCGTGAAA 60.749 50.000 4.92 0.00 0.00 2.69
3281 4844 2.270205 CTGCCGCCATCTTCCACT 59.730 61.111 0.00 0.00 0.00 4.00
3339 4910 1.080093 GGCCATTCTGTCGTCGACA 60.080 57.895 25.51 25.51 40.50 4.35
3371 4942 4.626081 GACAGCGCCACCACCTGT 62.626 66.667 2.29 0.00 42.10 4.00
3385 4956 2.420547 CCACCTGTGATCGTCCATCAAT 60.421 50.000 0.00 0.00 43.52 2.57
3390 5002 1.792949 GTGATCGTCCATCAATACGCC 59.207 52.381 0.00 0.00 43.52 5.68
3391 5003 1.686587 TGATCGTCCATCAATACGCCT 59.313 47.619 0.00 0.00 38.68 5.52
3392 5004 2.102420 TGATCGTCCATCAATACGCCTT 59.898 45.455 0.00 0.00 38.68 4.35
3393 5005 2.218953 TCGTCCATCAATACGCCTTC 57.781 50.000 0.00 0.00 38.94 3.46
3394 5006 0.852777 CGTCCATCAATACGCCTTCG 59.147 55.000 0.00 0.00 42.43 3.79
3405 5017 4.443266 GCCTTCGTCGCTGAGGCT 62.443 66.667 20.09 0.00 41.99 4.58
3406 5018 2.202676 CCTTCGTCGCTGAGGCTC 60.203 66.667 7.79 7.79 36.09 4.70
3407 5019 2.202676 CTTCGTCGCTGAGGCTCC 60.203 66.667 12.86 0.00 36.09 4.70
3408 5020 4.116328 TTCGTCGCTGAGGCTCCG 62.116 66.667 12.86 9.47 36.09 4.63
3440 5052 1.519455 CCGAGACCCATCGTTGCTC 60.519 63.158 0.00 0.00 41.12 4.26
3492 5104 1.075226 CCCCTCTAGCCAGCACCTA 60.075 63.158 0.00 0.00 0.00 3.08
3554 5167 1.301293 CCAAGAGGGAGAACTGCCC 59.699 63.158 8.68 5.25 46.40 5.36
3559 5172 2.269241 GGGAGAACTGCCCCGAAG 59.731 66.667 0.81 0.00 39.81 3.79
3693 6949 2.159181 CGCCGTCGTTGAAGGAAAT 58.841 52.632 2.86 0.00 33.09 2.17
3694 6950 1.352114 CGCCGTCGTTGAAGGAAATA 58.648 50.000 2.86 0.00 33.09 1.40
3695 6951 1.931172 CGCCGTCGTTGAAGGAAATAT 59.069 47.619 2.86 0.00 33.09 1.28
3696 6952 2.285602 CGCCGTCGTTGAAGGAAATATG 60.286 50.000 2.86 0.00 33.09 1.78
3698 6954 2.031683 CCGTCGTTGAAGGAAATATGCC 59.968 50.000 0.00 0.00 33.09 4.40
3700 6956 3.279434 GTCGTTGAAGGAAATATGCCCT 58.721 45.455 0.00 0.00 0.00 5.19
3702 6958 4.511826 GTCGTTGAAGGAAATATGCCCTAG 59.488 45.833 0.00 0.00 31.36 3.02
3703 6959 4.407621 TCGTTGAAGGAAATATGCCCTAGA 59.592 41.667 0.00 0.00 31.36 2.43
3705 6961 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
3783 7393 5.749596 TCATGCCAGAATTGTATTAACCG 57.250 39.130 0.00 0.00 0.00 4.44
3784 7394 4.578516 TCATGCCAGAATTGTATTAACCGG 59.421 41.667 0.00 0.00 0.00 5.28
3785 7395 4.223556 TGCCAGAATTGTATTAACCGGA 57.776 40.909 9.46 0.00 0.00 5.14
3786 7396 4.590918 TGCCAGAATTGTATTAACCGGAA 58.409 39.130 9.46 0.00 0.00 4.30
3787 7397 5.010933 TGCCAGAATTGTATTAACCGGAAA 58.989 37.500 9.46 1.61 0.00 3.13
3788 7398 5.106078 TGCCAGAATTGTATTAACCGGAAAC 60.106 40.000 9.46 0.00 0.00 2.78
3790 7400 6.349860 GCCAGAATTGTATTAACCGGAAACTT 60.350 38.462 9.46 0.00 0.00 2.66
3791 7401 7.027161 CCAGAATTGTATTAACCGGAAACTTG 58.973 38.462 9.46 0.00 0.00 3.16
3792 7402 7.094549 CCAGAATTGTATTAACCGGAAACTTGA 60.095 37.037 9.46 0.00 0.00 3.02
3795 7405 9.712359 GAATTGTATTAACCGGAAACTTGATAC 57.288 33.333 9.46 9.36 0.00 2.24
3796 7406 8.795842 ATTGTATTAACCGGAAACTTGATACA 57.204 30.769 9.46 11.96 30.33 2.29
3798 7408 8.203937 TGTATTAACCGGAAACTTGATACATG 57.796 34.615 9.46 0.00 28.53 3.21
3800 7410 6.489127 TTAACCGGAAACTTGATACATGTG 57.511 37.500 9.46 0.00 0.00 3.21
3801 7411 4.015872 ACCGGAAACTTGATACATGTGT 57.984 40.909 9.46 0.10 0.00 3.72
3802 7412 3.751175 ACCGGAAACTTGATACATGTGTG 59.249 43.478 9.46 0.00 0.00 3.82
3803 7413 4.000325 CCGGAAACTTGATACATGTGTGA 59.000 43.478 9.11 0.00 0.00 3.58
3804 7414 4.454161 CCGGAAACTTGATACATGTGTGAA 59.546 41.667 9.11 0.70 0.00 3.18
3805 7415 5.123820 CCGGAAACTTGATACATGTGTGAAT 59.876 40.000 9.11 0.00 0.00 2.57
3806 7416 6.315144 CCGGAAACTTGATACATGTGTGAATA 59.685 38.462 9.11 0.00 0.00 1.75
3807 7417 7.180079 CGGAAACTTGATACATGTGTGAATAC 58.820 38.462 9.11 0.00 0.00 1.89
3809 7419 8.677300 GGAAACTTGATACATGTGTGAATACAT 58.323 33.333 9.11 0.00 41.77 2.29
3813 7423 9.534565 ACTTGATACATGTGTGAATACATAGAC 57.465 33.333 9.11 0.00 39.17 2.59
3814 7424 9.533253 CTTGATACATGTGTGAATACATAGACA 57.467 33.333 9.11 0.00 39.17 3.41
3819 7429 8.389779 ACATGTGTGAATACATAGACAAAACA 57.610 30.769 0.00 0.00 39.17 2.83
3820 7430 8.289618 ACATGTGTGAATACATAGACAAAACAC 58.710 33.333 0.00 0.00 39.17 3.32
3821 7431 7.197071 TGTGTGAATACATAGACAAAACACC 57.803 36.000 0.00 0.00 39.39 4.16
3822 7432 6.768381 TGTGTGAATACATAGACAAAACACCA 59.232 34.615 0.00 0.00 39.39 4.17
3824 7434 7.750458 GTGTGAATACATAGACAAAACACCATG 59.250 37.037 0.00 0.00 39.39 3.66
3825 7435 7.446931 TGTGAATACATAGACAAAACACCATGT 59.553 33.333 0.00 0.00 0.00 3.21
3826 7436 7.962918 GTGAATACATAGACAAAACACCATGTC 59.037 37.037 0.00 0.00 44.92 3.06
3827 7437 7.120579 TGAATACATAGACAAAACACCATGTCC 59.879 37.037 2.52 0.00 45.55 4.02
3828 7438 4.724399 ACATAGACAAAACACCATGTCCA 58.276 39.130 2.52 0.00 45.55 4.02
3829 7439 5.324409 ACATAGACAAAACACCATGTCCAT 58.676 37.500 2.52 0.00 45.55 3.41
3831 7441 6.599244 ACATAGACAAAACACCATGTCCATAG 59.401 38.462 2.52 0.00 45.55 2.23
3832 7442 4.985538 AGACAAAACACCATGTCCATAGT 58.014 39.130 2.52 0.00 45.55 2.12
3835 7445 6.655003 AGACAAAACACCATGTCCATAGTAAG 59.345 38.462 2.52 0.00 45.55 2.34
3838 7448 3.115390 ACACCATGTCCATAGTAAGCCT 58.885 45.455 0.00 0.00 0.00 4.58
3839 7449 3.134804 ACACCATGTCCATAGTAAGCCTC 59.865 47.826 0.00 0.00 0.00 4.70
3840 7450 3.389329 CACCATGTCCATAGTAAGCCTCT 59.611 47.826 0.00 0.00 0.00 3.69
3841 7451 4.588951 CACCATGTCCATAGTAAGCCTCTA 59.411 45.833 0.00 0.00 0.00 2.43
3843 7453 4.835615 CCATGTCCATAGTAAGCCTCTACT 59.164 45.833 0.00 0.00 36.16 2.57
3845 7455 6.151985 CCATGTCCATAGTAAGCCTCTACTAG 59.848 46.154 0.00 0.00 37.70 2.57
3846 7456 6.511017 TGTCCATAGTAAGCCTCTACTAGA 57.489 41.667 0.00 0.00 37.70 2.43
3847 7457 6.297582 TGTCCATAGTAAGCCTCTACTAGAC 58.702 44.000 0.00 7.11 37.70 2.59
3849 7459 7.291885 TGTCCATAGTAAGCCTCTACTAGACTA 59.708 40.741 0.00 0.00 37.70 2.59
3850 7460 7.820872 GTCCATAGTAAGCCTCTACTAGACTAG 59.179 44.444 8.00 8.00 37.70 2.57
3851 7461 6.596497 CCATAGTAAGCCTCTACTAGACTAGC 59.404 46.154 9.52 0.00 37.70 3.42
3852 7462 5.899631 AGTAAGCCTCTACTAGACTAGCT 57.100 43.478 9.52 0.00 30.13 3.32
3853 7463 5.861727 AGTAAGCCTCTACTAGACTAGCTC 58.138 45.833 9.52 0.00 30.13 4.09
3854 7464 3.396260 AGCCTCTACTAGACTAGCTCG 57.604 52.381 9.52 0.00 0.00 5.03
3855 7465 2.701951 AGCCTCTACTAGACTAGCTCGT 59.298 50.000 9.52 0.00 0.00 4.18
3856 7466 3.135167 AGCCTCTACTAGACTAGCTCGTT 59.865 47.826 9.52 0.00 0.00 3.85
3857 7467 4.344679 AGCCTCTACTAGACTAGCTCGTTA 59.655 45.833 9.52 0.00 0.00 3.18
3858 7468 5.055812 GCCTCTACTAGACTAGCTCGTTAA 58.944 45.833 9.52 0.00 0.00 2.01
3859 7469 5.050159 GCCTCTACTAGACTAGCTCGTTAAC 60.050 48.000 9.52 0.00 0.00 2.01
3860 7470 5.466393 CCTCTACTAGACTAGCTCGTTAACC 59.534 48.000 9.52 0.00 0.00 2.85
3862 7472 6.409704 TCTACTAGACTAGCTCGTTAACCAA 58.590 40.000 9.52 0.00 0.00 3.67
3863 7473 5.972107 ACTAGACTAGCTCGTTAACCAAA 57.028 39.130 9.52 0.00 0.00 3.28
3864 7474 5.952033 ACTAGACTAGCTCGTTAACCAAAG 58.048 41.667 9.52 0.00 0.00 2.77
3866 7476 5.662674 AGACTAGCTCGTTAACCAAAGAT 57.337 39.130 0.00 0.00 0.00 2.40
3867 7477 5.411781 AGACTAGCTCGTTAACCAAAGATG 58.588 41.667 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.474313 TTTTTAGATGGAAGCATACCTACAAAT 57.526 29.630 0.00 0.00 0.00 2.32
53 54 7.465900 AGGGGATATTCTTTTCCATCTACAA 57.534 36.000 0.00 0.00 33.43 2.41
54 55 7.290061 CAAGGGGATATTCTTTTCCATCTACA 58.710 38.462 0.00 0.00 33.43 2.74
84 85 8.613482 GGAAAGATAATACACAAGCCTTTAGTC 58.387 37.037 0.00 0.00 0.00 2.59
88 89 5.944007 ACGGAAAGATAATACACAAGCCTTT 59.056 36.000 0.00 0.00 0.00 3.11
91 93 5.585047 AGAACGGAAAGATAATACACAAGCC 59.415 40.000 0.00 0.00 0.00 4.35
96 98 4.802039 TGCGAGAACGGAAAGATAATACAC 59.198 41.667 0.00 0.00 36.84 2.90
97 99 5.001237 TGCGAGAACGGAAAGATAATACA 57.999 39.130 0.00 0.00 36.84 2.29
109 111 2.230940 CGGTATGCTGCGAGAACGG 61.231 63.158 0.00 0.00 40.15 4.44
111 113 1.146358 GACCGGTATGCTGCGAGAAC 61.146 60.000 7.34 0.00 0.00 3.01
117 119 2.529151 CAATTTTGACCGGTATGCTGC 58.471 47.619 7.34 0.00 0.00 5.25
127 129 4.201705 CGCCAATACATTGCAATTTTGACC 60.202 41.667 20.28 13.04 36.48 4.02
131 133 3.936564 ACCGCCAATACATTGCAATTTT 58.063 36.364 9.83 2.14 36.48 1.82
155 157 2.096218 CGTTTCCTAAGCACACTTCTGC 60.096 50.000 0.00 0.00 37.33 4.26
168 170 4.404640 AGATGGATCCGATACGTTTCCTA 58.595 43.478 7.39 0.00 30.72 2.94
170 172 3.662247 AGATGGATCCGATACGTTTCC 57.338 47.619 7.39 0.00 0.00 3.13
197 199 1.517832 CTGCAAGTAGTCCCTCCCG 59.482 63.158 0.00 0.00 0.00 5.14
231 233 7.709947 TCTTCATATGCTGGAATTTGAATGAC 58.290 34.615 0.00 0.00 30.43 3.06
347 354 4.137543 AGTTCACAAAACTCACAGGGATC 58.862 43.478 0.00 0.00 0.00 3.36
451 461 1.411246 TGAAGTAACTGACTGCGGTGT 59.589 47.619 0.80 0.00 36.31 4.16
509 519 0.597637 CCCGTGGATGATCGTAGCAC 60.598 60.000 0.00 0.00 0.00 4.40
552 588 7.748241 GCTTTCAATAGAGCAAAGAGTTACAAG 59.252 37.037 0.00 0.00 38.73 3.16
606 642 1.831106 TCACGTGAGGATAACCATGCT 59.169 47.619 15.76 0.00 38.94 3.79
630 666 1.801913 CACGGCTGAGTCGCAGTAC 60.802 63.158 6.29 0.00 46.62 2.73
635 671 3.432051 ATAGGCACGGCTGAGTCGC 62.432 63.158 6.29 0.00 32.11 5.19
646 682 1.512926 CGGCTTATGGTGATAGGCAC 58.487 55.000 0.00 0.00 46.98 5.01
724 760 0.316442 CACGCCTATGCTGCATTTCG 60.316 55.000 21.56 21.10 34.43 3.46
733 769 0.808453 TAAGAACGCCACGCCTATGC 60.808 55.000 0.00 0.00 0.00 3.14
778 822 1.222115 GCCGACAGTGTGAGAACCAC 61.222 60.000 0.00 0.00 45.88 4.16
780 824 0.320771 ATGCCGACAGTGTGAGAACC 60.321 55.000 0.00 0.00 0.00 3.62
929 978 2.672996 CGAGTGGCTTGGGTTGGG 60.673 66.667 0.00 0.00 0.00 4.12
930 979 1.106944 AAACGAGTGGCTTGGGTTGG 61.107 55.000 0.00 0.00 0.00 3.77
931 980 0.310854 GAAACGAGTGGCTTGGGTTG 59.689 55.000 0.00 0.00 0.00 3.77
932 981 0.822121 GGAAACGAGTGGCTTGGGTT 60.822 55.000 0.00 0.00 0.00 4.11
933 982 1.228154 GGAAACGAGTGGCTTGGGT 60.228 57.895 0.00 0.00 0.00 4.51
1062 1114 1.691196 TCAGTTTGGCCACAAGGAAG 58.309 50.000 3.88 0.00 37.97 3.46
1067 1119 3.803021 GCAAATGATCAGTTTGGCCACAA 60.803 43.478 21.58 0.00 37.12 3.33
1074 1126 1.632422 GCCCGCAAATGATCAGTTTG 58.368 50.000 5.50 14.09 39.08 2.93
1093 1145 5.231357 CCTGCATCATCATCAAAATTTCACG 59.769 40.000 0.00 0.00 0.00 4.35
1258 1313 1.202818 AGAGGTCTTGTTCACCTTGCC 60.203 52.381 0.00 0.00 44.87 4.52
1284 1342 4.717629 TTGTCGTCGCAGCCGGAG 62.718 66.667 5.05 0.00 34.56 4.63
1316 1374 2.764547 GCCTCTCCCCGGCTAACT 60.765 66.667 0.00 0.00 44.17 2.24
1343 1401 2.369633 ACCTCGCTCATGATGCCCA 61.370 57.895 0.00 0.00 0.00 5.36
1380 1438 1.287425 GCGCGTAGGCTTACTGAATT 58.713 50.000 8.43 0.00 36.88 2.17
1383 1441 2.493030 GGCGCGTAGGCTTACTGA 59.507 61.111 8.43 0.00 42.90 3.41
1392 1450 4.508128 ATGGTGGACGGCGCGTAG 62.508 66.667 6.90 4.46 41.37 3.51
1417 1482 6.583912 ATTAATGCACACGTACTACATGTC 57.416 37.500 0.00 0.00 0.00 3.06
1418 1483 6.771076 CAATTAATGCACACGTACTACATGT 58.229 36.000 2.69 2.69 0.00 3.21
1497 1562 2.509916 GCCAGCTCCATCTCCAGG 59.490 66.667 0.00 0.00 0.00 4.45
1590 1655 1.705337 CCGTGTTGATGCCGATCACC 61.705 60.000 0.00 0.00 38.38 4.02
1684 1756 2.203625 GCCAAGGCCAAGTCCCAA 60.204 61.111 5.01 0.00 34.56 4.12
1685 1757 3.506743 TGCCAAGGCCAAGTCCCA 61.507 61.111 5.01 0.00 41.09 4.37
1686 1758 2.991540 GTGCCAAGGCCAAGTCCC 60.992 66.667 5.01 0.00 41.09 4.46
1687 1759 1.531602 AAGTGCCAAGGCCAAGTCC 60.532 57.895 5.01 0.00 41.09 3.85
1688 1760 1.662044 CAAGTGCCAAGGCCAAGTC 59.338 57.895 5.01 0.00 41.09 3.01
1689 1761 1.833934 CCAAGTGCCAAGGCCAAGT 60.834 57.895 5.01 0.00 41.09 3.16
1690 1762 3.053828 CCAAGTGCCAAGGCCAAG 58.946 61.111 5.01 0.00 41.09 3.61
1691 1763 3.233231 GCCAAGTGCCAAGGCCAA 61.233 61.111 5.01 0.00 42.58 4.52
1696 1768 3.045142 CCAGTGCCAAGTGCCAAG 58.955 61.111 0.00 0.00 40.16 3.61
1697 1769 3.225798 GCCAGTGCCAAGTGCCAA 61.226 61.111 0.00 0.00 40.16 4.52
1701 1773 2.922950 ATTGCGCCAGTGCCAAGTG 61.923 57.895 4.18 0.00 33.27 3.16
1702 1774 2.598394 ATTGCGCCAGTGCCAAGT 60.598 55.556 4.18 0.00 33.27 3.16
1703 1775 2.126228 CATTGCGCCAGTGCCAAG 60.126 61.111 4.18 0.00 33.27 3.61
1704 1776 4.360964 GCATTGCGCCAGTGCCAA 62.361 61.111 15.30 0.00 40.42 4.52
1711 1783 4.703799 CGTTGCTGCATTGCGCCA 62.704 61.111 18.16 9.29 41.33 5.69
1714 1786 1.893759 TAATTCGTTGCTGCATTGCG 58.106 45.000 1.84 9.19 35.36 4.85
1742 1814 3.845775 CGCGACCATGAACAACAAATTAG 59.154 43.478 0.00 0.00 0.00 1.73
1746 1818 0.317436 GCGCGACCATGAACAACAAA 60.317 50.000 12.10 0.00 0.00 2.83
1755 1830 4.805231 TACACCCGCGCGACCATG 62.805 66.667 34.63 23.92 0.00 3.66
1756 1831 4.508128 CTACACCCGCGCGACCAT 62.508 66.667 34.63 16.48 0.00 3.55
1771 1848 1.758514 CGCCTCAGCTTCTCCCCTA 60.759 63.158 0.00 0.00 36.60 3.53
1788 1865 1.519719 CCTTCTCCTTCTCCAGCCG 59.480 63.158 0.00 0.00 0.00 5.52
1958 2035 0.030908 CGGTGGCGAAGTAGATCCTC 59.969 60.000 0.00 0.00 0.00 3.71
2069 2155 3.487574 GCTCAACTCGATAATGAGGAACG 59.512 47.826 18.30 0.00 40.68 3.95
2076 2162 5.203370 GCAGAAATGCTCAACTCGATAATG 58.797 41.667 0.00 0.00 0.00 1.90
2077 2163 4.877823 TGCAGAAATGCTCAACTCGATAAT 59.122 37.500 1.53 0.00 35.49 1.28
2078 2164 4.252878 TGCAGAAATGCTCAACTCGATAA 58.747 39.130 1.53 0.00 35.49 1.75
2079 2165 3.860641 TGCAGAAATGCTCAACTCGATA 58.139 40.909 1.53 0.00 35.49 2.92
2080 2166 2.703416 TGCAGAAATGCTCAACTCGAT 58.297 42.857 1.53 0.00 35.49 3.59
2081 2167 2.168326 TGCAGAAATGCTCAACTCGA 57.832 45.000 1.53 0.00 35.49 4.04
2082 2168 2.975410 TTGCAGAAATGCTCAACTCG 57.025 45.000 1.53 0.00 35.49 4.18
2083 2169 6.535274 AAAAATTGCAGAAATGCTCAACTC 57.465 33.333 1.53 0.00 35.49 3.01
2203 2289 1.059584 TTTGAGACAGGACAGGCCCA 61.060 55.000 0.00 0.00 37.37 5.36
2218 2304 2.429930 CTCGGGTGCCACCTTTGA 59.570 61.111 14.71 8.66 38.64 2.69
2227 2313 0.179129 CATGATTTTGGCTCGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
2228 2314 0.179129 GCATGATTTTGGCTCGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
2230 2316 0.179129 GTGCATGATTTTGGCTCGGG 60.179 55.000 0.00 0.00 0.00 5.14
2231 2317 0.179129 GGTGCATGATTTTGGCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
2232 2318 0.527113 TGGTGCATGATTTTGGCTCG 59.473 50.000 0.00 0.00 0.00 5.03
2233 2319 2.738314 GTTTGGTGCATGATTTTGGCTC 59.262 45.455 0.00 0.00 0.00 4.70
2234 2320 2.104451 TGTTTGGTGCATGATTTTGGCT 59.896 40.909 0.00 0.00 0.00 4.75
2235 2321 2.492012 TGTTTGGTGCATGATTTTGGC 58.508 42.857 0.00 0.00 0.00 4.52
2236 2322 5.066246 AGTTTTGTTTGGTGCATGATTTTGG 59.934 36.000 0.00 0.00 0.00 3.28
2237 2323 6.121613 AGTTTTGTTTGGTGCATGATTTTG 57.878 33.333 0.00 0.00 0.00 2.44
2238 2324 5.006552 CGAGTTTTGTTTGGTGCATGATTTT 59.993 36.000 0.00 0.00 0.00 1.82
2239 2325 4.507388 CGAGTTTTGTTTGGTGCATGATTT 59.493 37.500 0.00 0.00 0.00 2.17
2240 2326 4.050553 CGAGTTTTGTTTGGTGCATGATT 58.949 39.130 0.00 0.00 0.00 2.57
2242 2328 2.223688 CCGAGTTTTGTTTGGTGCATGA 60.224 45.455 0.00 0.00 0.00 3.07
2243 2329 2.126467 CCGAGTTTTGTTTGGTGCATG 58.874 47.619 0.00 0.00 0.00 4.06
2244 2330 1.068434 CCCGAGTTTTGTTTGGTGCAT 59.932 47.619 0.00 0.00 0.00 3.96
2245 2331 0.457851 CCCGAGTTTTGTTTGGTGCA 59.542 50.000 0.00 0.00 0.00 4.57
2246 2332 0.249280 CCCCGAGTTTTGTTTGGTGC 60.249 55.000 0.00 0.00 0.00 5.01
2248 2334 1.396607 GGCCCCGAGTTTTGTTTGGT 61.397 55.000 0.00 0.00 0.00 3.67
2249 2335 1.365999 GGCCCCGAGTTTTGTTTGG 59.634 57.895 0.00 0.00 0.00 3.28
2250 2336 1.007849 CGGCCCCGAGTTTTGTTTG 60.008 57.895 0.00 0.00 42.83 2.93
2251 2337 1.152922 TCGGCCCCGAGTTTTGTTT 60.153 52.632 5.12 0.00 44.01 2.83
2252 2338 2.511900 TCGGCCCCGAGTTTTGTT 59.488 55.556 5.12 0.00 44.01 2.83
2264 2350 1.800286 GCAGCAAATTTCAGATCGGCC 60.800 52.381 0.00 0.00 0.00 6.13
2265 2351 1.133790 AGCAGCAAATTTCAGATCGGC 59.866 47.619 0.00 0.00 0.00 5.54
2268 2354 6.812160 AGAAAATCAGCAGCAAATTTCAGATC 59.188 34.615 12.58 0.00 31.06 2.75
2269 2355 6.590292 CAGAAAATCAGCAGCAAATTTCAGAT 59.410 34.615 12.58 0.00 31.06 2.90
2270 2356 5.924254 CAGAAAATCAGCAGCAAATTTCAGA 59.076 36.000 12.58 0.00 31.06 3.27
2271 2357 5.694910 ACAGAAAATCAGCAGCAAATTTCAG 59.305 36.000 12.58 8.69 31.06 3.02
2277 2363 2.957680 TGGACAGAAAATCAGCAGCAAA 59.042 40.909 0.00 0.00 0.00 3.68
2288 2374 5.067674 CCACAAGAACAAGATGGACAGAAAA 59.932 40.000 0.00 0.00 31.69 2.29
2293 2379 2.174639 ACCCACAAGAACAAGATGGACA 59.825 45.455 0.00 0.00 31.69 4.02
2294 2380 2.814336 GACCCACAAGAACAAGATGGAC 59.186 50.000 0.00 0.00 31.69 4.02
2365 2455 0.675837 GCCGGAAGTACTTGTTCCCC 60.676 60.000 14.14 6.53 40.51 4.81
2457 2557 5.867903 TCAGATTGCCTTCCAAAGAAAAA 57.132 34.783 0.00 0.00 36.92 1.94
2481 2587 0.596082 TCGTCAGAATGTCTCGCACA 59.404 50.000 0.00 0.00 40.18 4.57
2482 2588 1.585668 CATCGTCAGAATGTCTCGCAC 59.414 52.381 0.00 0.00 37.40 5.34
2483 2589 1.202348 ACATCGTCAGAATGTCTCGCA 59.798 47.619 0.00 0.00 37.40 5.10
2484 2590 1.914634 ACATCGTCAGAATGTCTCGC 58.085 50.000 0.00 0.00 37.40 5.03
2485 2591 3.482598 GCAAACATCGTCAGAATGTCTCG 60.483 47.826 0.00 0.00 37.40 4.04
2516 2622 2.135933 GATCGGCCTGAAAATAGTCCG 58.864 52.381 0.00 0.00 38.34 4.79
2517 2623 2.495084 GGATCGGCCTGAAAATAGTCC 58.505 52.381 0.00 0.00 0.00 3.85
2665 2771 2.031508 GGCGAAGAGAGAACGATAGGAG 60.032 54.545 0.00 0.00 43.77 3.69
2666 2772 1.948145 GGCGAAGAGAGAACGATAGGA 59.052 52.381 0.00 0.00 43.77 2.94
2667 2773 1.001158 GGGCGAAGAGAGAACGATAGG 60.001 57.143 0.00 0.00 43.77 2.57
2668 2774 1.676529 TGGGCGAAGAGAGAACGATAG 59.323 52.381 0.00 0.00 46.19 2.08
2669 2775 1.758936 TGGGCGAAGAGAGAACGATA 58.241 50.000 0.00 0.00 0.00 2.92
2670 2776 1.115467 ATGGGCGAAGAGAGAACGAT 58.885 50.000 0.00 0.00 0.00 3.73
2690 2796 1.542030 CTGGTCAGACAAGCTCGTAGT 59.458 52.381 2.17 0.00 0.00 2.73
2691 2797 1.813178 TCTGGTCAGACAAGCTCGTAG 59.187 52.381 2.17 0.00 31.41 3.51
2692 2798 1.813178 CTCTGGTCAGACAAGCTCGTA 59.187 52.381 2.17 0.00 33.22 3.43
2693 2799 0.600557 CTCTGGTCAGACAAGCTCGT 59.399 55.000 2.17 0.00 33.22 4.18
2709 2820 4.609018 ACGCACGGCTGTTGCTCT 62.609 61.111 15.13 1.68 39.59 4.09
2712 2823 2.725815 GAAACGCACGGCTGTTGC 60.726 61.111 0.00 2.48 38.76 4.17
2877 2988 1.137872 CACCACTACTCCAGATCAGGC 59.862 57.143 0.00 0.00 0.00 4.85
2941 3055 5.355350 AGTGATCGGATTCCAAATCAAGTTC 59.645 40.000 15.70 7.09 30.59 3.01
2943 3057 4.848357 AGTGATCGGATTCCAAATCAAGT 58.152 39.130 15.70 7.12 30.59 3.16
2985 3100 4.081031 GGAACCCGAGTTATCCTTCTCTTT 60.081 45.833 0.00 0.00 35.94 2.52
2986 3101 3.451540 GGAACCCGAGTTATCCTTCTCTT 59.548 47.826 0.00 0.00 35.94 2.85
2987 3102 3.032459 GGAACCCGAGTTATCCTTCTCT 58.968 50.000 0.00 0.00 35.94 3.10
2988 3103 3.455990 GGAACCCGAGTTATCCTTCTC 57.544 52.381 0.00 0.00 35.94 2.87
3013 3134 5.104562 AGAATCATTATGTGCATCGCTTG 57.895 39.130 0.00 0.00 0.00 4.01
3016 3137 7.134815 ACTTTTAGAATCATTATGTGCATCGC 58.865 34.615 0.00 0.00 0.00 4.58
3095 3284 0.396435 TAGTGACTGTGGTTGCCAGG 59.604 55.000 0.00 0.00 32.34 4.45
3099 3289 2.240493 AGTGTAGTGACTGTGGTTGC 57.760 50.000 0.00 0.00 0.00 4.17
3119 3309 6.324819 GCACATCATAAAGCATGTAAGTGTT 58.675 36.000 0.00 0.00 35.81 3.32
3145 3335 7.848223 TGACATGTTTTTCATACGAGATCAT 57.152 32.000 0.00 0.00 34.67 2.45
3157 4712 6.747280 CCAACGGATTAGATGACATGTTTTTC 59.253 38.462 0.00 0.00 0.00 2.29
3162 4717 3.206150 GCCAACGGATTAGATGACATGT 58.794 45.455 0.00 0.00 0.00 3.21
3163 4718 2.549754 GGCCAACGGATTAGATGACATG 59.450 50.000 0.00 0.00 0.00 3.21
3164 4719 2.439507 AGGCCAACGGATTAGATGACAT 59.560 45.455 5.01 0.00 0.00 3.06
3165 4720 1.837439 AGGCCAACGGATTAGATGACA 59.163 47.619 5.01 0.00 0.00 3.58
3166 4721 2.158957 TGAGGCCAACGGATTAGATGAC 60.159 50.000 5.01 0.00 0.00 3.06
3196 4751 4.704833 TCTCGGCTTGCCACCAGC 62.705 66.667 12.45 0.00 44.14 4.85
3247 4803 2.430332 GGCAGCTGATTCTAGAGTGTCT 59.570 50.000 20.43 0.00 0.00 3.41
3281 4844 2.583441 CGCTCCTGAAGGTGGGACA 61.583 63.158 9.24 0.00 42.12 4.02
3339 4910 0.179084 CTGTCTGACGTTGTGGTGGT 60.179 55.000 2.98 0.00 0.00 4.16
3371 4942 1.686587 AGGCGTATTGATGGACGATCA 59.313 47.619 0.00 0.00 41.60 2.92
3373 4944 2.755650 GAAGGCGTATTGATGGACGAT 58.244 47.619 0.00 0.00 41.60 3.73
3374 4945 1.535226 CGAAGGCGTATTGATGGACGA 60.535 52.381 0.00 0.00 41.60 4.20
3390 5002 2.202676 GGAGCCTCAGCGACGAAG 60.203 66.667 0.00 0.00 46.67 3.79
3391 5003 4.116328 CGGAGCCTCAGCGACGAA 62.116 66.667 0.00 0.00 46.67 3.85
3415 5027 4.552365 ATGGGTCTCGGCGGCATG 62.552 66.667 10.53 0.07 0.00 4.06
3416 5028 4.241555 GATGGGTCTCGGCGGCAT 62.242 66.667 10.53 0.00 0.00 4.40
3419 5031 4.143333 AACGATGGGTCTCGGCGG 62.143 66.667 7.21 0.00 42.88 6.13
3420 5032 2.885644 CAACGATGGGTCTCGGCG 60.886 66.667 0.00 0.00 42.88 6.46
3421 5033 3.195698 GCAACGATGGGTCTCGGC 61.196 66.667 0.00 0.00 42.88 5.54
3422 5034 1.519455 GAGCAACGATGGGTCTCGG 60.519 63.158 0.00 0.00 42.88 4.63
3423 5035 0.108615 AAGAGCAACGATGGGTCTCG 60.109 55.000 7.62 0.00 41.88 4.04
3424 5036 1.363744 CAAGAGCAACGATGGGTCTC 58.636 55.000 7.62 0.54 41.88 3.36
3425 5037 0.674895 GCAAGAGCAACGATGGGTCT 60.675 55.000 0.00 0.00 44.38 3.85
3426 5038 1.796796 GCAAGAGCAACGATGGGTC 59.203 57.895 0.00 0.00 41.58 4.46
3427 5039 3.987404 GCAAGAGCAACGATGGGT 58.013 55.556 0.00 0.00 41.58 4.51
3492 5104 2.670148 GGGGGCATCGTCTTGGAGT 61.670 63.158 0.00 0.00 0.00 3.85
3536 5149 1.301293 GGGCAGTTCTCCCTCTTGG 59.699 63.158 0.00 0.00 40.66 3.61
3537 5150 1.301293 GGGGCAGTTCTCCCTCTTG 59.699 63.158 0.00 0.00 43.41 3.02
3538 5151 2.294078 CGGGGCAGTTCTCCCTCTT 61.294 63.158 0.00 0.00 43.41 2.85
3539 5152 2.685380 CGGGGCAGTTCTCCCTCT 60.685 66.667 0.00 0.00 43.41 3.69
3540 5153 2.245438 CTTCGGGGCAGTTCTCCCTC 62.245 65.000 0.00 0.00 43.41 4.30
3541 5154 2.203938 TTCGGGGCAGTTCTCCCT 60.204 61.111 0.00 0.00 43.41 4.20
3542 5155 2.269241 CTTCGGGGCAGTTCTCCC 59.731 66.667 0.00 0.00 43.15 4.30
3543 5156 2.269241 CCTTCGGGGCAGTTCTCC 59.731 66.667 0.00 0.00 0.00 3.71
3552 5165 3.497884 GATGATGGGGCCTTCGGGG 62.498 68.421 0.84 0.00 35.16 5.73
3553 5166 2.113986 GATGATGGGGCCTTCGGG 59.886 66.667 0.84 0.00 38.37 5.14
3554 5167 2.281070 CGATGATGGGGCCTTCGG 60.281 66.667 0.84 0.00 0.00 4.30
3555 5168 1.595382 GACGATGATGGGGCCTTCG 60.595 63.158 0.84 7.59 37.27 3.79
3556 5169 1.227973 GGACGATGATGGGGCCTTC 60.228 63.158 0.84 1.31 0.00 3.46
3557 5170 2.919043 GGACGATGATGGGGCCTT 59.081 61.111 0.84 0.00 0.00 4.35
3558 5171 3.550431 CGGACGATGATGGGGCCT 61.550 66.667 0.84 0.00 0.00 5.19
3559 5172 2.788191 GATCGGACGATGATGGGGCC 62.788 65.000 12.40 0.00 34.60 5.80
3625 5238 4.555718 TCGTCATTTACATTTGTCGTCG 57.444 40.909 0.00 0.00 0.00 5.12
3757 7367 8.349245 CGGTTAATACAATTCTGGCATGAATAA 58.651 33.333 0.00 3.63 35.82 1.40
3758 7368 7.040755 CCGGTTAATACAATTCTGGCATGAATA 60.041 37.037 0.00 0.16 35.82 1.75
3759 7369 6.239008 CCGGTTAATACAATTCTGGCATGAAT 60.239 38.462 0.00 6.42 38.19 2.57
3760 7370 5.067153 CCGGTTAATACAATTCTGGCATGAA 59.933 40.000 0.00 0.00 0.00 2.57
3762 7372 4.578516 TCCGGTTAATACAATTCTGGCATG 59.421 41.667 0.00 0.00 0.00 4.06
3763 7373 4.787551 TCCGGTTAATACAATTCTGGCAT 58.212 39.130 0.00 0.00 0.00 4.40
3764 7374 4.223556 TCCGGTTAATACAATTCTGGCA 57.776 40.909 0.00 0.00 0.00 4.92
3765 7375 5.124936 AGTTTCCGGTTAATACAATTCTGGC 59.875 40.000 0.00 0.00 0.00 4.85
3767 7377 7.812648 TCAAGTTTCCGGTTAATACAATTCTG 58.187 34.615 0.00 0.00 0.00 3.02
3768 7378 7.989416 TCAAGTTTCCGGTTAATACAATTCT 57.011 32.000 0.00 0.00 0.00 2.40
3769 7379 9.712359 GTATCAAGTTTCCGGTTAATACAATTC 57.288 33.333 0.00 0.00 0.00 2.17
3770 7380 9.233649 TGTATCAAGTTTCCGGTTAATACAATT 57.766 29.630 0.00 0.00 0.00 2.32
3771 7381 8.795842 TGTATCAAGTTTCCGGTTAATACAAT 57.204 30.769 0.00 0.00 0.00 2.71
3772 7382 8.670135 CATGTATCAAGTTTCCGGTTAATACAA 58.330 33.333 0.00 0.00 33.52 2.41
3773 7383 7.825270 ACATGTATCAAGTTTCCGGTTAATACA 59.175 33.333 0.00 0.88 34.10 2.29
3774 7384 8.120465 CACATGTATCAAGTTTCCGGTTAATAC 58.880 37.037 0.00 0.00 0.00 1.89
3775 7385 7.825270 ACACATGTATCAAGTTTCCGGTTAATA 59.175 33.333 0.00 0.00 0.00 0.98
3776 7386 6.657541 ACACATGTATCAAGTTTCCGGTTAAT 59.342 34.615 0.00 0.00 0.00 1.40
3777 7387 5.998981 ACACATGTATCAAGTTTCCGGTTAA 59.001 36.000 0.00 0.00 0.00 2.01
3778 7388 5.410132 CACACATGTATCAAGTTTCCGGTTA 59.590 40.000 0.00 0.00 0.00 2.85
3780 7390 3.751175 CACACATGTATCAAGTTTCCGGT 59.249 43.478 0.00 0.00 0.00 5.28
3781 7391 4.000325 TCACACATGTATCAAGTTTCCGG 59.000 43.478 0.00 0.00 0.00 5.14
3782 7392 5.605564 TTCACACATGTATCAAGTTTCCG 57.394 39.130 0.00 0.00 0.00 4.30
3783 7393 8.039603 TGTATTCACACATGTATCAAGTTTCC 57.960 34.615 0.00 0.00 0.00 3.13
3787 7397 9.534565 GTCTATGTATTCACACATGTATCAAGT 57.465 33.333 0.00 0.00 39.46 3.16
3788 7398 9.533253 TGTCTATGTATTCACACATGTATCAAG 57.467 33.333 0.00 0.00 39.46 3.02
3790 7400 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
3795 7405 7.750458 GGTGTTTTGTCTATGTATTCACACATG 59.250 37.037 0.00 0.00 39.46 3.21
3796 7406 7.446931 TGGTGTTTTGTCTATGTATTCACACAT 59.553 33.333 0.00 0.00 41.88 3.21
3798 7408 7.197071 TGGTGTTTTGTCTATGTATTCACAC 57.803 36.000 0.00 0.00 37.54 3.82
3800 7410 7.816640 ACATGGTGTTTTGTCTATGTATTCAC 58.183 34.615 0.00 0.00 0.00 3.18
3801 7411 7.120579 GGACATGGTGTTTTGTCTATGTATTCA 59.879 37.037 0.00 0.00 41.55 2.57
3802 7412 7.120579 TGGACATGGTGTTTTGTCTATGTATTC 59.879 37.037 0.00 0.00 41.55 1.75
3803 7413 6.945435 TGGACATGGTGTTTTGTCTATGTATT 59.055 34.615 0.00 0.00 41.55 1.89
3804 7414 6.480763 TGGACATGGTGTTTTGTCTATGTAT 58.519 36.000 0.00 0.00 41.55 2.29
3805 7415 5.870706 TGGACATGGTGTTTTGTCTATGTA 58.129 37.500 0.00 0.00 41.55 2.29
3806 7416 4.724399 TGGACATGGTGTTTTGTCTATGT 58.276 39.130 0.00 0.00 41.55 2.29
3807 7417 5.902613 ATGGACATGGTGTTTTGTCTATG 57.097 39.130 0.00 0.00 40.97 2.23
3809 7419 6.121776 ACTATGGACATGGTGTTTTGTCTA 57.878 37.500 0.24 0.00 41.55 2.59
3810 7420 4.985538 ACTATGGACATGGTGTTTTGTCT 58.014 39.130 0.24 0.00 41.55 3.41
3811 7421 6.622896 GCTTACTATGGACATGGTGTTTTGTC 60.623 42.308 11.00 0.00 41.19 3.18
3813 7423 5.393027 GGCTTACTATGGACATGGTGTTTTG 60.393 44.000 11.00 0.00 34.29 2.44
3814 7424 4.705023 GGCTTACTATGGACATGGTGTTTT 59.295 41.667 11.00 0.00 34.29 2.43
3818 7428 3.389329 AGAGGCTTACTATGGACATGGTG 59.611 47.826 11.00 0.00 34.29 4.17
3819 7429 3.658725 AGAGGCTTACTATGGACATGGT 58.341 45.455 6.55 6.55 36.46 3.55
3820 7430 4.835615 AGTAGAGGCTTACTATGGACATGG 59.164 45.833 0.00 0.00 32.25 3.66
3821 7431 6.943146 TCTAGTAGAGGCTTACTATGGACATG 59.057 42.308 13.35 0.00 36.01 3.21
3822 7432 6.943718 GTCTAGTAGAGGCTTACTATGGACAT 59.056 42.308 18.37 0.00 36.01 3.06
3824 7434 6.536447 AGTCTAGTAGAGGCTTACTATGGAC 58.464 44.000 0.00 17.11 36.38 4.02
3825 7435 6.766997 AGTCTAGTAGAGGCTTACTATGGA 57.233 41.667 0.00 8.31 36.38 3.41
3826 7436 6.596497 GCTAGTCTAGTAGAGGCTTACTATGG 59.404 46.154 8.68 6.80 36.38 2.74
3827 7437 7.391620 AGCTAGTCTAGTAGAGGCTTACTATG 58.608 42.308 13.32 9.71 36.38 2.23
3828 7438 7.563724 AGCTAGTCTAGTAGAGGCTTACTAT 57.436 40.000 13.32 5.83 36.38 2.12
3829 7439 6.294675 CGAGCTAGTCTAGTAGAGGCTTACTA 60.295 46.154 17.68 12.72 36.38 1.82
3831 7441 4.687483 CGAGCTAGTCTAGTAGAGGCTTAC 59.313 50.000 17.68 9.37 36.38 2.34
3832 7442 4.344679 ACGAGCTAGTCTAGTAGAGGCTTA 59.655 45.833 17.68 3.40 36.38 3.09
3835 7445 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70
3838 7448 5.982356 TGGTTAACGAGCTAGTCTAGTAGA 58.018 41.667 8.68 0.00 30.15 2.59
3839 7449 6.674694 TTGGTTAACGAGCTAGTCTAGTAG 57.325 41.667 8.68 3.39 30.15 2.57
3840 7450 6.881065 TCTTTGGTTAACGAGCTAGTCTAGTA 59.119 38.462 8.68 0.00 30.15 1.82
3841 7451 5.709164 TCTTTGGTTAACGAGCTAGTCTAGT 59.291 40.000 8.68 0.00 31.68 2.57
3843 7453 6.405508 CCATCTTTGGTTAACGAGCTAGTCTA 60.406 42.308 0.00 0.00 38.30 2.59
3845 7455 4.567159 CCATCTTTGGTTAACGAGCTAGTC 59.433 45.833 0.00 0.00 38.30 2.59
3846 7456 4.504858 CCATCTTTGGTTAACGAGCTAGT 58.495 43.478 0.00 0.00 38.30 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.