Multiple sequence alignment - TraesCS3B01G419200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G419200 chr3B 100.000 7589 0 0 1 7589 655845925 655853513 0.000000e+00 14015.0
1 TraesCS3B01G419200 chr3B 90.184 163 11 1 3211 3368 654649873 654649711 2.780000e-49 207.0
2 TraesCS3B01G419200 chr3B 90.000 90 8 1 6074 6163 487224399 487224487 1.730000e-21 115.0
3 TraesCS3B01G419200 chr3D 95.269 3953 117 24 3678 7589 496735273 496739196 0.000000e+00 6200.0
4 TraesCS3B01G419200 chr3D 92.698 2876 115 38 385 3213 496732190 496735017 0.000000e+00 4060.0
5 TraesCS3B01G419200 chr3D 92.958 284 15 3 102 380 496731801 496732084 7.090000e-110 409.0
6 TraesCS3B01G419200 chr3D 94.681 188 10 0 3490 3677 455064362 455064549 7.450000e-75 292.0
7 TraesCS3B01G419200 chr3D 89.595 173 13 1 3210 3377 87925998 87926170 1.660000e-51 215.0
8 TraesCS3B01G419200 chr3D 88.525 183 12 5 3200 3374 128214182 128214001 5.970000e-51 213.0
9 TraesCS3B01G419200 chr3D 91.912 136 9 1 3366 3501 496735015 496735148 1.010000e-43 189.0
10 TraesCS3B01G419200 chr3D 100.000 101 0 0 1 101 496731607 496731707 3.620000e-43 187.0
11 TraesCS3B01G419200 chr3D 88.889 90 9 1 6074 6163 373490402 373490490 8.050000e-20 110.0
12 TraesCS3B01G419200 chr3D 89.583 48 5 0 6121 6168 595675979 595675932 2.290000e-05 62.1
13 TraesCS3B01G419200 chr3A 91.997 2449 125 32 3658 6072 638072372 638069961 0.000000e+00 3371.0
14 TraesCS3B01G419200 chr3A 91.193 1828 91 31 1413 3213 638074304 638072520 0.000000e+00 2420.0
15 TraesCS3B01G419200 chr3A 97.746 1331 25 4 6262 7589 638069685 638068357 0.000000e+00 2287.0
16 TraesCS3B01G419200 chr3A 89.435 1363 64 28 102 1420 638075667 638074341 0.000000e+00 1646.0
17 TraesCS3B01G419200 chr3A 88.439 173 15 3 3203 3370 8671088 8670916 3.590000e-48 204.0
18 TraesCS3B01G419200 chr3A 98.020 101 2 0 1 101 638075860 638075760 7.830000e-40 176.0
19 TraesCS3B01G419200 chr3A 86.076 158 18 4 1221 1376 724376061 724376216 4.710000e-37 167.0
20 TraesCS3B01G419200 chr3A 88.889 90 9 1 6074 6163 495014624 495014712 8.050000e-20 110.0
21 TraesCS3B01G419200 chr3A 96.774 62 2 0 6179 6240 638069857 638069796 3.750000e-18 104.0
22 TraesCS3B01G419200 chr2B 88.994 636 44 11 4933 5562 364679134 364679749 0.000000e+00 763.0
23 TraesCS3B01G419200 chr2B 88.836 636 45 11 4933 5562 364678012 364678627 0.000000e+00 758.0
24 TraesCS3B01G419200 chr2B 86.607 672 54 8 4933 5587 501731742 501731090 0.000000e+00 710.0
25 TraesCS3B01G419200 chr2B 97.753 178 3 1 3497 3673 28427173 28427350 9.570000e-79 305.0
26 TraesCS3B01G419200 chr5B 87.112 644 47 8 4959 5587 120215674 120215052 0.000000e+00 697.0
27 TraesCS3B01G419200 chr7A 98.844 173 2 0 3497 3669 115807523 115807695 7.400000e-80 309.0
28 TraesCS3B01G419200 chr7A 88.506 174 13 2 3201 3369 187107679 187107850 3.590000e-48 204.0
29 TraesCS3B01G419200 chr5A 98.830 171 2 0 3492 3662 382566807 382566637 9.570000e-79 305.0
30 TraesCS3B01G419200 chr5A 89.326 178 13 2 3211 3383 320214243 320214419 1.280000e-52 219.0
31 TraesCS3B01G419200 chr6D 95.745 188 6 2 3497 3683 392896975 392897161 1.240000e-77 302.0
32 TraesCS3B01G419200 chr6D 88.235 85 8 2 6076 6160 269762117 269762199 4.850000e-17 100.0
33 TraesCS3B01G419200 chr4D 99.398 166 1 0 3496 3661 477898794 477898959 1.240000e-77 302.0
34 TraesCS3B01G419200 chr4D 96.703 182 3 3 3497 3678 93338042 93338220 4.450000e-77 300.0
35 TraesCS3B01G419200 chr1D 97.207 179 1 4 3497 3675 360358387 360358213 4.450000e-77 300.0
36 TraesCS3B01G419200 chr1D 88.506 87 9 1 6074 6160 258014442 258014357 3.750000e-18 104.0
37 TraesCS3B01G419200 chr7D 95.652 184 7 1 3497 3680 39001449 39001267 2.070000e-75 294.0
38 TraesCS3B01G419200 chr2D 90.123 162 11 1 3212 3368 299891715 299891554 9.980000e-49 206.0
39 TraesCS3B01G419200 chr2A 90.566 159 10 1 3212 3365 342647399 342647557 9.980000e-49 206.0
40 TraesCS3B01G419200 chr2A 89.157 166 13 1 3211 3371 135473390 135473225 1.290000e-47 202.0
41 TraesCS3B01G419200 chr7B 87.778 90 10 1 6071 6160 192372483 192372571 3.750000e-18 104.0
42 TraesCS3B01G419200 chr6B 87.778 90 10 1 6071 6160 395857423 395857511 3.750000e-18 104.0
43 TraesCS3B01G419200 chr6B 86.667 90 10 2 6071 6160 422359696 422359783 1.740000e-16 99.0
44 TraesCS3B01G419200 chr6A 88.235 85 8 2 6076 6160 384089458 384089540 4.850000e-17 100.0
45 TraesCS3B01G419200 chr5D 87.356 87 10 1 6074 6160 484571073 484570988 1.740000e-16 99.0
46 TraesCS3B01G419200 chr1B 90.769 65 5 1 6084 6148 223148323 223148260 1.360000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G419200 chr3B 655845925 655853513 7588 False 14015.000000 14015 100.000000 1 7589 1 chr3B.!!$F2 7588
1 TraesCS3B01G419200 chr3D 496731607 496739196 7589 False 2209.000000 6200 94.567400 1 7589 5 chr3D.!!$F4 7588
2 TraesCS3B01G419200 chr3A 638068357 638075860 7503 True 1667.333333 3371 94.194167 1 7589 6 chr3A.!!$R2 7588
3 TraesCS3B01G419200 chr2B 364678012 364679749 1737 False 760.500000 763 88.915000 4933 5562 2 chr2B.!!$F2 629
4 TraesCS3B01G419200 chr2B 501731090 501731742 652 True 710.000000 710 86.607000 4933 5587 1 chr2B.!!$R1 654
5 TraesCS3B01G419200 chr5B 120215052 120215674 622 True 697.000000 697 87.112000 4959 5587 1 chr5B.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 646 0.179181 CATGTCATTGTCGCAGTGGC 60.179 55.000 0.0 1.19 0.00 5.01 F
1196 1453 0.531532 GTAGCAGCATCGCCATGAGT 60.532 55.000 0.0 0.00 30.57 3.41 F
1461 1763 0.535780 TCAGTGCAGTTGAGCTTGGG 60.536 55.000 0.0 0.00 34.99 4.12 F
2273 2583 0.250513 ATCCTCGGAACAAGTGCCTC 59.749 55.000 0.0 0.00 0.00 4.70 F
2452 2771 0.108585 AGGTGCATCGGAACAAGTGT 59.891 50.000 0.0 0.00 0.00 3.55 F
2453 2772 0.238289 GGTGCATCGGAACAAGTGTG 59.762 55.000 0.0 0.00 0.00 3.82 F
2459 2778 0.605319 TCGGAACAAGTGTGCATCCC 60.605 55.000 0.0 0.00 32.74 3.85 F
3511 3898 0.708802 TTCCTACTCCCTCCGTTCCT 59.291 55.000 0.0 0.00 0.00 3.36 F
3669 4056 1.414181 ACGGAGGGAGTAGAATGCATG 59.586 52.381 0.0 0.00 0.00 4.06 F
4833 5255 1.671979 CACATGCTAGTGTCCCCATG 58.328 55.000 0.0 4.73 40.54 3.66 F
6093 7146 0.974383 ACTCCGTCCGATCCAAAAGT 59.026 50.000 0.0 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1849 0.106268 ACCAATTCACAGTGCACCCA 60.106 50.000 14.63 0.00 0.00 4.51 R
2115 2425 0.579630 CAGCGACGTTGTTGTGCTTA 59.420 50.000 11.24 0.00 32.66 3.09 R
2441 2760 0.606401 AGGGATGCACACTTGTTCCG 60.606 55.000 0.00 0.00 31.32 4.30 R
3647 4034 1.906574 TGCATTCTACTCCCTCCGTTT 59.093 47.619 0.00 0.00 0.00 3.60 R
3889 4279 1.985159 TGCTAACACCAATCCTCCAGT 59.015 47.619 0.00 0.00 0.00 4.00 R
4342 4755 2.013400 TGTGCTGGTTGTACACTTGTG 58.987 47.619 0.00 0.00 36.38 3.33 R
4375 4788 9.264782 CACAAGAGTTTTTGCAACTAAAAATTG 57.735 29.630 0.00 6.84 40.43 2.32 R
4833 5255 0.179054 GGTTTGGATAGACTCGGGGC 60.179 60.000 0.00 0.00 0.00 5.80 R
4989 5413 1.225704 GATCCAACTGGGCCAGAGG 59.774 63.158 38.99 34.18 35.18 3.69 R
6478 7704 0.312416 GACGATGAGGATGGAGACCG 59.688 60.000 0.00 0.00 0.00 4.79 R
7486 8715 0.327259 AGCATCAAAGCCTCTCTGCA 59.673 50.000 0.00 0.00 34.23 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 220 1.830408 CTCTCGGAGTGGCTAGGGG 60.830 68.421 4.69 0.00 0.00 4.79
137 231 1.174078 GGCTAGGGGTACGAGCTCTC 61.174 65.000 12.85 2.09 45.82 3.20
138 232 0.465824 GCTAGGGGTACGAGCTCTCA 60.466 60.000 12.85 0.00 43.55 3.27
147 241 4.499357 GGGTACGAGCTCTCACGATAATTT 60.499 45.833 12.85 0.00 0.00 1.82
182 276 6.871492 TGTTCTAGTACTGATTTTCATTCGCA 59.129 34.615 5.39 0.00 0.00 5.10
190 287 6.057533 ACTGATTTTCATTCGCAGATGGATA 58.942 36.000 0.00 0.00 35.04 2.59
198 295 1.001706 TCGCAGATGGATAGTACACGC 60.002 52.381 0.00 0.00 0.00 5.34
200 297 1.341531 GCAGATGGATAGTACACGCCT 59.658 52.381 0.00 0.00 0.00 5.52
209 306 7.116075 TGGATAGTACACGCCTATTAAACTT 57.884 36.000 0.00 0.00 0.00 2.66
343 451 1.196808 ACACGGAAGCAAAGCATTACG 59.803 47.619 0.00 0.00 0.00 3.18
383 587 5.008415 AGGAGTACTCATAAACGATACGTGG 59.992 44.000 23.91 0.00 39.99 4.94
424 633 2.265739 GGAGCCGCAGACATGTCA 59.734 61.111 27.02 0.00 0.00 3.58
437 646 0.179181 CATGTCATTGTCGCAGTGGC 60.179 55.000 0.00 1.19 0.00 5.01
476 686 1.737236 TGTGTTGTGTCACAGAACAGC 59.263 47.619 20.25 14.88 45.65 4.40
608 818 4.472833 ACCCATGATTATCCTCCATCTAGC 59.527 45.833 0.00 0.00 0.00 3.42
610 820 4.472470 CCATGATTATCCTCCATCTAGCCA 59.528 45.833 0.00 0.00 0.00 4.75
611 821 5.132312 CCATGATTATCCTCCATCTAGCCAT 59.868 44.000 0.00 0.00 0.00 4.40
613 823 5.344566 TGATTATCCTCCATCTAGCCATGA 58.655 41.667 0.00 0.00 0.00 3.07
615 825 1.332195 TCCTCCATCTAGCCATGACG 58.668 55.000 0.00 0.00 0.00 4.35
616 826 1.133482 TCCTCCATCTAGCCATGACGA 60.133 52.381 0.00 0.00 0.00 4.20
617 827 1.898472 CCTCCATCTAGCCATGACGAT 59.102 52.381 0.00 0.00 0.00 3.73
618 828 2.094286 CCTCCATCTAGCCATGACGATC 60.094 54.545 0.00 0.00 0.00 3.69
619 829 1.541588 TCCATCTAGCCATGACGATCG 59.458 52.381 14.88 14.88 0.00 3.69
620 830 1.541588 CCATCTAGCCATGACGATCGA 59.458 52.381 24.34 0.00 0.00 3.59
621 831 2.590073 CATCTAGCCATGACGATCGAC 58.410 52.381 24.34 17.11 0.00 4.20
622 832 1.968704 TCTAGCCATGACGATCGACT 58.031 50.000 24.34 10.83 0.00 4.18
818 1046 2.146342 CCCTGTAACAGCTGTTCACTG 58.854 52.381 34.29 27.27 39.31 3.66
819 1047 2.146342 CCTGTAACAGCTGTTCACTGG 58.854 52.381 34.29 30.65 39.55 4.00
821 1049 1.765904 TGTAACAGCTGTTCACTGGGA 59.234 47.619 34.29 13.53 39.55 4.37
823 1051 0.546122 AACAGCTGTTCACTGGGACA 59.454 50.000 26.36 0.00 39.55 4.02
1123 1377 2.839228 AGCCCAGTTCAGATCCTTAGT 58.161 47.619 0.00 0.00 0.00 2.24
1171 1425 1.902508 TGGTGCTGAGGTAGAAGAAGG 59.097 52.381 0.00 0.00 0.00 3.46
1196 1453 0.531532 GTAGCAGCATCGCCATGAGT 60.532 55.000 0.00 0.00 30.57 3.41
1416 1718 3.032017 ACTATGCACACACACACTCTC 57.968 47.619 0.00 0.00 0.00 3.20
1436 1738 1.257743 GCTGGTTTTCCCTTCCCTTC 58.742 55.000 0.00 0.00 39.73 3.46
1453 1755 2.033801 CCTTCCAGTTTCAGTGCAGTTG 59.966 50.000 0.00 0.00 0.00 3.16
1461 1763 0.535780 TCAGTGCAGTTGAGCTTGGG 60.536 55.000 0.00 0.00 34.99 4.12
1504 1806 2.542411 GGTGCAAGTGTTCTCTTTGCTG 60.542 50.000 9.47 0.00 0.00 4.41
1509 1811 3.475566 AGTGTTCTCTTTGCTGCACTA 57.524 42.857 0.00 0.00 35.71 2.74
1530 1832 7.417612 CACTACACATACTTTTTCTGTTTGCT 58.582 34.615 0.00 0.00 0.00 3.91
1540 1842 0.949397 TCTGTTTGCTTGAGCTGCAG 59.051 50.000 10.11 10.11 41.71 4.41
1547 1849 2.995283 TGCTTGAGCTGCAGTATGAAT 58.005 42.857 16.64 0.00 39.67 2.57
1550 1852 2.336945 TGAGCTGCAGTATGAATGGG 57.663 50.000 16.64 0.00 39.69 4.00
1807 2115 7.937394 GCTAGGTATCCTAATTGAAAGCCTTTA 59.063 37.037 0.00 0.00 35.49 1.85
1838 2146 7.386851 TGACACCCTCTCTTTAATTAGTTGAG 58.613 38.462 5.58 5.58 0.00 3.02
1909 2219 5.473039 TCGTCATCATTATAGATGCACTGG 58.527 41.667 0.00 0.00 43.94 4.00
1910 2220 4.092529 CGTCATCATTATAGATGCACTGGC 59.907 45.833 0.00 0.00 43.94 4.85
2087 2397 8.001292 AGAGAATAAGTGGCTTAAAATGGCTAT 58.999 33.333 0.00 0.00 29.35 2.97
2115 2425 3.152341 CTCAGTGCAACCTGATTTTCCT 58.848 45.455 7.42 0.00 40.53 3.36
2173 2483 6.895204 AGCTGGAAAATTAAATAGTGGCCTTA 59.105 34.615 3.32 0.00 0.00 2.69
2196 2506 6.753913 AACAGGATATCCTCTGAGCATTTA 57.246 37.500 22.02 0.00 46.65 1.40
2226 2536 5.880332 TGCAGAAAGTAGATAAAGGCGAAAT 59.120 36.000 0.00 0.00 0.00 2.17
2238 2548 8.211629 AGATAAAGGCGAAATAACATTAGAGGT 58.788 33.333 0.00 0.00 0.00 3.85
2273 2583 0.250513 ATCCTCGGAACAAGTGCCTC 59.749 55.000 0.00 0.00 0.00 4.70
2292 2606 3.126171 CCTCGTTTCGGATAATGTGCAAA 59.874 43.478 0.00 0.00 0.00 3.68
2389 2703 7.549134 ACTTCTATTATGTCGTCTTGCAATTCA 59.451 33.333 0.00 0.00 0.00 2.57
2430 2749 7.326789 GGCATGACCGTGAATATAAATTTCATG 59.673 37.037 0.00 0.00 37.87 3.07
2441 2760 9.837525 GAATATAAATTTCATGAGAGGTGCATC 57.162 33.333 0.00 0.00 0.00 3.91
2452 2771 0.108585 AGGTGCATCGGAACAAGTGT 59.891 50.000 0.00 0.00 0.00 3.55
2453 2772 0.238289 GGTGCATCGGAACAAGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
2457 2776 1.466360 GCATCGGAACAAGTGTGCATC 60.466 52.381 0.00 0.00 33.09 3.91
2459 2778 0.605319 TCGGAACAAGTGTGCATCCC 60.605 55.000 0.00 0.00 32.74 3.85
2461 2780 1.620822 GGAACAAGTGTGCATCCCTT 58.379 50.000 0.00 0.00 31.00 3.95
2462 2781 1.270550 GGAACAAGTGTGCATCCCTTG 59.729 52.381 16.68 16.68 41.02 3.61
2482 2801 5.277538 CCTTGCTTTTACAGAAGTGTGTCTC 60.278 44.000 0.00 0.00 37.52 3.36
2514 2833 4.403113 TGATGTTAGCGAGTAATGTGGGTA 59.597 41.667 0.00 0.00 0.00 3.69
2746 3069 6.253758 TGTCTATGGGTAAGTTTCTCTCTCA 58.746 40.000 0.00 0.00 0.00 3.27
2747 3070 6.897966 TGTCTATGGGTAAGTTTCTCTCTCAT 59.102 38.462 0.00 0.00 0.00 2.90
2748 3071 7.068839 TGTCTATGGGTAAGTTTCTCTCTCATC 59.931 40.741 0.00 0.00 0.00 2.92
2749 3072 7.286775 GTCTATGGGTAAGTTTCTCTCTCATCT 59.713 40.741 0.00 0.00 0.00 2.90
2750 3073 5.923733 TGGGTAAGTTTCTCTCTCATCTC 57.076 43.478 0.00 0.00 0.00 2.75
2751 3074 5.584913 TGGGTAAGTTTCTCTCTCATCTCT 58.415 41.667 0.00 0.00 0.00 3.10
2752 3075 5.654650 TGGGTAAGTTTCTCTCTCATCTCTC 59.345 44.000 0.00 0.00 0.00 3.20
2809 3134 0.817654 CTATGGACCAGCTGTGACGA 59.182 55.000 13.81 2.63 0.00 4.20
2810 3135 0.817654 TATGGACCAGCTGTGACGAG 59.182 55.000 13.81 0.00 0.00 4.18
2814 3139 4.767255 CCAGCTGTGACGAGGGGC 62.767 72.222 13.81 0.00 0.00 5.80
2844 3169 2.094957 TGCATGACATGTGCATTGTGAG 60.095 45.455 16.62 0.00 46.76 3.51
2845 3170 2.094906 GCATGACATGTGCATTGTGAGT 60.095 45.455 16.62 0.00 42.08 3.41
2847 3172 4.552355 CATGACATGTGCATTGTGAGTTT 58.448 39.130 1.15 0.00 0.00 2.66
2848 3173 3.967401 TGACATGTGCATTGTGAGTTTG 58.033 40.909 1.15 0.00 0.00 2.93
2849 3174 3.380954 TGACATGTGCATTGTGAGTTTGT 59.619 39.130 1.15 0.00 0.00 2.83
2850 3175 3.708890 ACATGTGCATTGTGAGTTTGTG 58.291 40.909 0.00 0.00 0.00 3.33
2851 3176 3.380954 ACATGTGCATTGTGAGTTTGTGA 59.619 39.130 0.00 0.00 0.00 3.58
2852 3177 3.419264 TGTGCATTGTGAGTTTGTGAC 57.581 42.857 0.00 0.00 0.00 3.67
2853 3178 2.098934 TGTGCATTGTGAGTTTGTGACC 59.901 45.455 0.00 0.00 0.00 4.02
2854 3179 2.098934 GTGCATTGTGAGTTTGTGACCA 59.901 45.455 0.00 0.00 0.00 4.02
2855 3180 2.957680 TGCATTGTGAGTTTGTGACCAT 59.042 40.909 0.00 0.00 0.00 3.55
2856 3181 3.243468 TGCATTGTGAGTTTGTGACCATG 60.243 43.478 0.00 0.00 0.00 3.66
2857 3182 3.311106 CATTGTGAGTTTGTGACCATGC 58.689 45.455 0.00 0.00 0.00 4.06
2858 3183 2.346766 TGTGAGTTTGTGACCATGCT 57.653 45.000 0.00 0.00 0.00 3.79
2902 3227 4.039032 GCGTGTAACTTTTTAGCTTGCAA 58.961 39.130 0.00 0.00 31.75 4.08
2906 3236 6.505732 CGTGTAACTTTTTAGCTTGCAAACAC 60.506 38.462 0.00 6.58 31.75 3.32
2907 3237 6.530181 GTGTAACTTTTTAGCTTGCAAACACT 59.470 34.615 12.86 8.03 31.91 3.55
2915 3245 3.484407 AGCTTGCAAACACTTCTCTCAT 58.516 40.909 0.00 0.00 0.00 2.90
2919 3249 5.673337 TTGCAAACACTTCTCTCATACAC 57.327 39.130 0.00 0.00 0.00 2.90
2926 3256 7.468141 AACACTTCTCTCATACACATACTCA 57.532 36.000 0.00 0.00 0.00 3.41
3002 3332 1.615883 TCAGTCTCACACTCTTGCTCC 59.384 52.381 0.00 0.00 30.26 4.70
3003 3333 1.617850 CAGTCTCACACTCTTGCTCCT 59.382 52.381 0.00 0.00 30.26 3.69
3007 3337 2.170166 CTCACACTCTTGCTCCTCTCT 58.830 52.381 0.00 0.00 0.00 3.10
3040 3370 2.159240 TCTCTCTCACACACACACACAC 60.159 50.000 0.00 0.00 0.00 3.82
3041 3371 1.548269 TCTCTCACACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
3042 3372 1.660607 CTCTCACACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
3043 3373 1.001406 TCTCACACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
3044 3374 1.128507 CTCACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
3163 3496 6.074648 CAGGTACTCTCCTTATTCTCCAGAT 58.925 44.000 0.00 0.00 34.60 2.90
3201 3534 7.040478 TGCAGTAAGTTCAATCTTTGCATAAGT 60.040 33.333 0.00 0.00 36.72 2.24
3220 3553 9.872721 GCATAAGTAATAAGTTATACTCCCTCC 57.127 37.037 0.00 0.00 31.33 4.30
3222 3555 9.819754 ATAAGTAATAAGTTATACTCCCTCCGT 57.180 33.333 0.00 0.00 30.84 4.69
3223 3556 8.544687 AAGTAATAAGTTATACTCCCTCCGTT 57.455 34.615 0.00 0.00 0.00 4.44
3224 3557 8.544687 AGTAATAAGTTATACTCCCTCCGTTT 57.455 34.615 0.00 0.00 0.00 3.60
3225 3558 8.637099 AGTAATAAGTTATACTCCCTCCGTTTC 58.363 37.037 0.00 0.00 0.00 2.78
3226 3559 7.672122 AATAAGTTATACTCCCTCCGTTTCT 57.328 36.000 0.00 0.00 0.00 2.52
3227 3560 8.773033 AATAAGTTATACTCCCTCCGTTTCTA 57.227 34.615 0.00 0.00 0.00 2.10
3228 3561 8.773033 ATAAGTTATACTCCCTCCGTTTCTAA 57.227 34.615 0.00 0.00 0.00 2.10
3229 3562 7.486407 AAGTTATACTCCCTCCGTTTCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
3230 3563 7.672122 AGTTATACTCCCTCCGTTTCTAAAT 57.328 36.000 0.00 0.00 0.00 1.40
3231 3564 8.773033 AGTTATACTCCCTCCGTTTCTAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3232 3565 9.377238 AGTTATACTCCCTCCGTTTCTAAATAT 57.623 33.333 0.00 0.00 0.00 1.28
3236 3569 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3237 3570 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3238 3571 7.059202 TCCCTCCGTTTCTAAATATAAGTCC 57.941 40.000 0.00 0.00 0.00 3.85
3239 3572 5.924825 CCCTCCGTTTCTAAATATAAGTCCG 59.075 44.000 0.00 0.00 0.00 4.79
3240 3573 6.462067 CCCTCCGTTTCTAAATATAAGTCCGT 60.462 42.308 0.00 0.00 0.00 4.69
3241 3574 6.982724 CCTCCGTTTCTAAATATAAGTCCGTT 59.017 38.462 0.00 0.00 0.00 4.44
3242 3575 7.493645 CCTCCGTTTCTAAATATAAGTCCGTTT 59.506 37.037 0.00 0.00 0.00 3.60
3243 3576 9.520204 CTCCGTTTCTAAATATAAGTCCGTTTA 57.480 33.333 0.00 0.00 0.00 2.01
3244 3577 9.520204 TCCGTTTCTAAATATAAGTCCGTTTAG 57.480 33.333 0.00 0.00 36.15 1.85
3245 3578 9.520204 CCGTTTCTAAATATAAGTCCGTTTAGA 57.480 33.333 0.00 0.00 39.85 2.10
3257 3590 9.712305 ATAAGTCCGTTTAGAGATTCCAATATG 57.288 33.333 0.00 0.00 0.00 1.78
3258 3591 7.125792 AGTCCGTTTAGAGATTCCAATATGT 57.874 36.000 0.00 0.00 0.00 2.29
3259 3592 8.246430 AGTCCGTTTAGAGATTCCAATATGTA 57.754 34.615 0.00 0.00 0.00 2.29
3260 3593 8.142551 AGTCCGTTTAGAGATTCCAATATGTAC 58.857 37.037 0.00 0.00 0.00 2.90
3261 3594 8.142551 GTCCGTTTAGAGATTCCAATATGTACT 58.857 37.037 0.00 0.00 0.00 2.73
3262 3595 9.358406 TCCGTTTAGAGATTCCAATATGTACTA 57.642 33.333 0.00 0.00 0.00 1.82
3263 3596 9.408069 CCGTTTAGAGATTCCAATATGTACTAC 57.592 37.037 0.00 0.00 0.00 2.73
3264 3597 9.961265 CGTTTAGAGATTCCAATATGTACTACA 57.039 33.333 0.00 0.00 0.00 2.74
3269 3602 8.740906 AGAGATTCCAATATGTACTACATACGG 58.259 37.037 10.52 13.16 43.13 4.02
3270 3603 8.645814 AGATTCCAATATGTACTACATACGGA 57.354 34.615 17.79 17.79 43.13 4.69
3271 3604 8.740906 AGATTCCAATATGTACTACATACGGAG 58.259 37.037 19.43 8.80 43.13 4.63
3272 3605 6.263516 TCCAATATGTACTACATACGGAGC 57.736 41.667 17.79 0.00 43.13 4.70
3273 3606 5.771165 TCCAATATGTACTACATACGGAGCA 59.229 40.000 17.79 4.75 43.13 4.26
3274 3607 6.265876 TCCAATATGTACTACATACGGAGCAA 59.734 38.462 17.79 4.52 43.13 3.91
3275 3608 6.926826 CCAATATGTACTACATACGGAGCAAA 59.073 38.462 15.66 0.00 43.13 3.68
3276 3609 7.439955 CCAATATGTACTACATACGGAGCAAAA 59.560 37.037 15.66 0.00 43.13 2.44
3277 3610 8.988934 CAATATGTACTACATACGGAGCAAAAT 58.011 33.333 10.52 0.00 43.13 1.82
3278 3611 6.844696 ATGTACTACATACGGAGCAAAATG 57.155 37.500 0.00 0.00 36.99 2.32
3279 3612 5.968254 TGTACTACATACGGAGCAAAATGA 58.032 37.500 0.00 0.00 36.47 2.57
3280 3613 6.040247 TGTACTACATACGGAGCAAAATGAG 58.960 40.000 0.00 0.00 36.47 2.90
3281 3614 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3282 3615 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3283 3616 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3284 3617 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3285 3618 4.759693 ACATACGGAGCAAAATGAGTGAAA 59.240 37.500 0.00 0.00 0.00 2.69
3286 3619 3.626028 ACGGAGCAAAATGAGTGAAAC 57.374 42.857 0.00 0.00 0.00 2.78
3322 3655 9.743581 TGTCTATATACATCCGTATTTAGTCCA 57.256 33.333 8.80 5.98 39.13 4.02
3331 3664 9.793259 ACATCCGTATTTAGTCCATATTGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
3334 3667 9.706691 TCCGTATTTAGTCCATATTGAAATCTC 57.293 33.333 0.00 0.00 0.00 2.75
3335 3668 9.712305 CCGTATTTAGTCCATATTGAAATCTCT 57.288 33.333 0.00 0.00 0.00 3.10
3359 3692 9.635520 TCTAGAAAGACTTGTATTTAGAAACGG 57.364 33.333 0.00 0.00 0.00 4.44
3360 3693 9.635520 CTAGAAAGACTTGTATTTAGAAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
3361 3694 8.535690 AGAAAGACTTGTATTTAGAAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
3362 3695 7.603024 AGAAAGACTTGTATTTAGAAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
3363 3696 5.731591 AGACTTGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
3364 3697 5.482878 AGACTTGTATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
3381 3741 8.221965 ACGGAGGGAATATTAAATTGAAGTTC 57.778 34.615 0.00 0.00 0.00 3.01
3442 3802 9.825972 CGAGAAAAAGAAAAGATAAAGCACATA 57.174 29.630 0.00 0.00 0.00 2.29
3444 3804 9.612620 AGAAAAAGAAAAGATAAAGCACATACG 57.387 29.630 0.00 0.00 0.00 3.06
3445 3805 8.742554 AAAAAGAAAAGATAAAGCACATACGG 57.257 30.769 0.00 0.00 0.00 4.02
3446 3806 5.485662 AGAAAAGATAAAGCACATACGGC 57.514 39.130 0.00 0.00 0.00 5.68
3447 3807 5.186198 AGAAAAGATAAAGCACATACGGCT 58.814 37.500 0.00 0.00 45.15 5.52
3448 3808 5.294552 AGAAAAGATAAAGCACATACGGCTC 59.705 40.000 0.00 0.00 41.66 4.70
3449 3809 4.408182 AAGATAAAGCACATACGGCTCT 57.592 40.909 0.00 0.00 41.66 4.09
3450 3810 5.531122 AAGATAAAGCACATACGGCTCTA 57.469 39.130 0.00 0.00 41.66 2.43
3471 3836 7.846592 GCTCTACTATTTAGTTTGCATTTCGTC 59.153 37.037 0.00 0.00 37.73 4.20
3510 3897 1.206610 GTTTCCTACTCCCTCCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
3511 3898 0.708802 TTCCTACTCCCTCCGTTCCT 59.291 55.000 0.00 0.00 0.00 3.36
3517 3904 5.085219 CCTACTCCCTCCGTTCCTAAATAT 58.915 45.833 0.00 0.00 0.00 1.28
3520 3907 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3523 3910 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3526 3913 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3527 3914 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3529 3916 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3530 3917 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3543 3930 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3544 3931 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3545 3932 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3546 3933 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3547 3934 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3548 3935 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3549 3936 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3550 3937 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3553 3940 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3554 3941 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3555 3942 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3556 3943 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3557 3944 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3558 3945 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3559 3946 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3561 3948 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3563 3950 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3564 3951 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3565 3952 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3566 3953 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3567 3954 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3568 3955 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3569 3956 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3570 3957 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3572 3959 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3573 3960 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3575 3962 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3576 3963 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3577 3964 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3610 3997 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3612 3999 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
3613 4000 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
3614 4001 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
3615 4002 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
3616 4003 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
3617 4004 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
3618 4005 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
3619 4006 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
3620 4007 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
3621 4008 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
3622 4009 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
3623 4010 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
3624 4011 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
3625 4012 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
3626 4013 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
3627 4014 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
3628 4015 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
3629 4016 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
3630 4017 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
3631 4018 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
3632 4019 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
3633 4020 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3661 4048 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
3662 4049 7.909485 AATATTTAGAAACGGAGGGAGTAGA 57.091 36.000 0.00 0.00 0.00 2.59
3663 4050 7.909485 ATATTTAGAAACGGAGGGAGTAGAA 57.091 36.000 0.00 0.00 0.00 2.10
3664 4051 6.809976 ATTTAGAAACGGAGGGAGTAGAAT 57.190 37.500 0.00 0.00 0.00 2.40
3665 4052 5.593679 TTAGAAACGGAGGGAGTAGAATG 57.406 43.478 0.00 0.00 0.00 2.67
3666 4053 2.168728 AGAAACGGAGGGAGTAGAATGC 59.831 50.000 0.00 0.00 0.00 3.56
3667 4054 1.568504 AACGGAGGGAGTAGAATGCA 58.431 50.000 0.00 0.00 0.00 3.96
3668 4055 1.794714 ACGGAGGGAGTAGAATGCAT 58.205 50.000 0.00 0.00 0.00 3.96
3669 4056 1.414181 ACGGAGGGAGTAGAATGCATG 59.586 52.381 0.00 0.00 0.00 4.06
3670 4057 1.875576 CGGAGGGAGTAGAATGCATGC 60.876 57.143 11.82 11.82 0.00 4.06
3721 4111 8.736097 TGATACTATATGTGGTAAAGGGATGT 57.264 34.615 0.00 0.00 0.00 3.06
3758 4148 7.805071 GCACTACATAATTGCTATTTGGCTAAG 59.195 37.037 0.00 0.00 33.26 2.18
3823 4213 5.407387 GGATCATAAAATGCAATGATGTGCC 59.593 40.000 14.76 7.63 44.26 5.01
3889 4279 4.681744 CAACTGCTAACTTTCAAGCCAAA 58.318 39.130 0.00 0.00 37.97 3.28
3906 4296 3.761897 CCAAACTGGAGGATTGGTGTTA 58.238 45.455 0.00 0.00 40.96 2.41
3965 4356 6.915843 ACAGGTTTAACTTAAAACAGAATGCG 59.084 34.615 11.15 0.00 42.53 4.73
4046 4439 5.775686 TGGCTTGAGCATGCATAATAAATC 58.224 37.500 21.98 6.41 44.36 2.17
4047 4440 4.855388 GGCTTGAGCATGCATAATAAATCG 59.145 41.667 21.98 2.77 44.36 3.34
4354 4767 4.503910 CATAGGCTAGCACAAGTGTACAA 58.496 43.478 18.24 0.00 0.00 2.41
4509 4929 6.971527 TGTTGTTTGACAGTAATATACCCG 57.028 37.500 0.00 0.00 0.00 5.28
4620 5041 7.855784 AGATGGTTGTTTTTCTATTTTCCCT 57.144 32.000 0.00 0.00 0.00 4.20
4833 5255 1.671979 CACATGCTAGTGTCCCCATG 58.328 55.000 0.00 4.73 40.54 3.66
4989 5413 1.150567 CCTGCGACACTCAGCTATGC 61.151 60.000 0.00 0.00 0.00 3.14
5147 5573 6.428083 TTCAATAGGTGTGAGGTAGACAAA 57.572 37.500 0.00 0.00 0.00 2.83
5158 5585 2.239907 AGGTAGACAAAAGATCTGGGGC 59.760 50.000 0.00 0.00 0.00 5.80
5188 5623 6.096987 CACTACAGCAATAGAACTAGAGGGAA 59.903 42.308 0.00 0.00 0.00 3.97
5189 5624 5.606348 ACAGCAATAGAACTAGAGGGAAG 57.394 43.478 0.00 0.00 0.00 3.46
5190 5625 4.407296 ACAGCAATAGAACTAGAGGGAAGG 59.593 45.833 0.00 0.00 0.00 3.46
5191 5626 4.651503 CAGCAATAGAACTAGAGGGAAGGA 59.348 45.833 0.00 0.00 0.00 3.36
5192 5627 4.898861 AGCAATAGAACTAGAGGGAAGGAG 59.101 45.833 0.00 0.00 0.00 3.69
5193 5628 4.039852 GCAATAGAACTAGAGGGAAGGAGG 59.960 50.000 0.00 0.00 0.00 4.30
5194 5629 2.858787 AGAACTAGAGGGAAGGAGGG 57.141 55.000 0.00 0.00 0.00 4.30
5195 5630 2.298951 AGAACTAGAGGGAAGGAGGGA 58.701 52.381 0.00 0.00 0.00 4.20
5241 5677 8.789767 AGCAGGATAGTATATATACTGGCATT 57.210 34.615 28.32 12.43 43.10 3.56
5265 5701 5.643348 TGTGTAACAGAGCATGGTTTATGAG 59.357 40.000 0.00 0.00 45.67 2.90
5273 5709 6.707608 CAGAGCATGGTTTATGAGCAACTATA 59.292 38.462 0.00 0.00 39.57 1.31
5274 5710 7.389884 CAGAGCATGGTTTATGAGCAACTATAT 59.610 37.037 0.00 0.00 39.57 0.86
5352 5810 7.734942 TGAGAATGCTTAAAGTTGGGAAAATT 58.265 30.769 0.00 0.00 0.00 1.82
5403 5863 9.862371 AATAGATGCTATACTACTGTTATGTGC 57.138 33.333 0.00 0.00 0.00 4.57
5405 5865 4.866921 TGCTATACTACTGTTATGTGCCG 58.133 43.478 0.00 0.00 0.00 5.69
5562 6024 8.649841 CAAACTGCATACAAACATAATTCAAGG 58.350 33.333 0.00 0.00 0.00 3.61
5565 6027 7.039082 ACTGCATACAAACATAATTCAAGGGTT 60.039 33.333 0.00 0.00 0.00 4.11
5621 6128 8.663025 CAGACATCATGGCATAATACTTATGTC 58.337 37.037 0.00 10.50 45.95 3.06
5780 6745 1.665679 CACTACGCCCAACTATGCAAG 59.334 52.381 0.00 0.00 0.00 4.01
6092 7145 2.953466 TACTCCGTCCGATCCAAAAG 57.047 50.000 0.00 0.00 0.00 2.27
6093 7146 0.974383 ACTCCGTCCGATCCAAAAGT 59.026 50.000 0.00 0.00 0.00 2.66
6094 7147 2.173519 ACTCCGTCCGATCCAAAAGTA 58.826 47.619 0.00 0.00 0.00 2.24
6095 7148 2.564062 ACTCCGTCCGATCCAAAAGTAA 59.436 45.455 0.00 0.00 0.00 2.24
6096 7149 2.928116 CTCCGTCCGATCCAAAAGTAAC 59.072 50.000 0.00 0.00 0.00 2.50
6133 7186 4.020543 ACTGGGTTTAGTTCAAAACTGCA 58.979 39.130 2.65 0.00 42.84 4.41
6268 7493 4.677673 AATCCATTTGCAAAGATAGCCC 57.322 40.909 18.19 0.00 0.00 5.19
7057 8283 7.653713 AGTCTATAACTTCATTTCCACGCATAG 59.346 37.037 0.00 0.00 33.03 2.23
7060 8286 2.930040 ACTTCATTTCCACGCATAGTCG 59.070 45.455 0.00 0.00 0.00 4.18
7187 8414 8.603242 TCAACTAACAGTTCTTTATCCTTCAC 57.397 34.615 0.00 0.00 36.03 3.18
7199 8426 8.438676 TCTTTATCCTTCACTTTATAGCTTGC 57.561 34.615 0.00 0.00 0.00 4.01
7200 8427 8.046708 TCTTTATCCTTCACTTTATAGCTTGCA 58.953 33.333 0.00 0.00 0.00 4.08
7201 8428 8.752005 TTTATCCTTCACTTTATAGCTTGCAT 57.248 30.769 0.00 0.00 0.00 3.96
7202 8429 6.874288 ATCCTTCACTTTATAGCTTGCATC 57.126 37.500 0.00 0.00 0.00 3.91
7241 8470 2.124403 GAGCCTGTGCCCCTCATG 60.124 66.667 0.00 0.00 38.69 3.07
7461 8690 3.118555 TGTCATTACCATGGTTAGGTCCG 60.119 47.826 25.38 5.30 40.54 4.79
7483 8712 2.495669 GGACCCACTCTCTTTCTCTCTG 59.504 54.545 0.00 0.00 0.00 3.35
7486 8715 2.896685 CCCACTCTCTTTCTCTCTGTGT 59.103 50.000 0.00 0.00 0.00 3.72
7578 8807 0.984230 CCACTTCTAGGGCAGGAACA 59.016 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 231 8.915871 AGAACAAATGATTGGAAATTATCGTG 57.084 30.769 0.00 0.00 41.01 4.35
147 241 9.739276 AAATCAGTACTAGAACAAATGATTGGA 57.261 29.630 0.00 0.00 41.01 3.53
182 276 7.232941 AGTTTAATAGGCGTGTACTATCCATCT 59.767 37.037 0.00 0.00 31.07 2.90
190 287 8.090214 TCAGTTAAAGTTTAATAGGCGTGTACT 58.910 33.333 11.12 0.00 0.00 2.73
209 306 8.177013 GTCGAAAGTTAGGTTGTTTTCAGTTAA 58.823 33.333 0.00 0.00 31.56 2.01
374 482 2.163613 TGGCTATGCTATCCACGTATCG 59.836 50.000 0.00 0.00 0.00 2.92
383 587 5.698545 CAGGTTAGTTCTTGGCTATGCTATC 59.301 44.000 0.00 0.00 0.00 2.08
394 603 1.726853 CGGCTCCAGGTTAGTTCTTG 58.273 55.000 0.00 0.00 0.00 3.02
437 646 4.181578 CACAGGAGGTTTGTATAGGTTCG 58.818 47.826 0.00 0.00 0.00 3.95
476 686 1.297598 GCCGATGCGAAATTCCGTG 60.298 57.895 0.00 0.00 0.00 4.94
518 728 1.495584 TTGCTCGCGTCCAACAGAAC 61.496 55.000 5.77 0.00 0.00 3.01
615 825 2.481854 TGGACTAGCTACGAGTCGATC 58.518 52.381 21.50 7.41 43.62 3.69
616 826 2.613133 GTTGGACTAGCTACGAGTCGAT 59.387 50.000 21.50 6.19 43.62 3.59
617 827 2.005451 GTTGGACTAGCTACGAGTCGA 58.995 52.381 21.50 2.86 43.62 4.20
618 828 1.063764 GGTTGGACTAGCTACGAGTCG 59.936 57.143 11.85 11.85 43.62 4.18
619 829 2.089980 TGGTTGGACTAGCTACGAGTC 58.910 52.381 6.58 6.58 42.24 3.36
620 830 2.211250 TGGTTGGACTAGCTACGAGT 57.789 50.000 0.00 0.00 0.00 4.18
621 831 3.587797 TTTGGTTGGACTAGCTACGAG 57.412 47.619 0.00 0.00 0.00 4.18
622 832 4.708421 AGTATTTGGTTGGACTAGCTACGA 59.292 41.667 0.00 0.00 0.00 3.43
916 1148 2.170166 CTTTTGGTCCAAGCCATGCTA 58.830 47.619 4.09 0.00 38.25 3.49
1109 1363 3.373439 CAGCTGCAACTAAGGATCTGAAC 59.627 47.826 0.00 0.00 0.00 3.18
1123 1377 2.031120 AGCAACTAAAACCAGCTGCAA 58.969 42.857 8.66 0.00 39.56 4.08
1171 1425 0.878086 GGCGATGCTGCTACCTTCTC 60.878 60.000 0.00 0.00 34.52 2.87
1196 1453 3.770040 CCCATCACACTCGGCGGA 61.770 66.667 7.21 0.00 0.00 5.54
1271 1528 1.198713 TCCTCATGGTCTCCTTCTGC 58.801 55.000 0.00 0.00 34.23 4.26
1416 1718 0.539669 AAGGGAAGGGAAAACCAGCG 60.540 55.000 0.00 0.00 43.89 5.18
1436 1738 1.002033 GCTCAACTGCACTGAAACTGG 60.002 52.381 0.00 0.00 0.00 4.00
1483 1785 1.678101 AGCAAAGAGAACACTTGCACC 59.322 47.619 8.55 0.00 31.57 5.01
1504 1806 6.142320 GCAAACAGAAAAAGTATGTGTAGTGC 59.858 38.462 0.00 0.00 32.21 4.40
1509 1811 6.862209 TCAAGCAAACAGAAAAAGTATGTGT 58.138 32.000 0.00 0.00 0.00 3.72
1530 1832 2.025981 ACCCATTCATACTGCAGCTCAA 60.026 45.455 15.27 1.76 0.00 3.02
1540 1842 2.710377 TCACAGTGCACCCATTCATAC 58.290 47.619 14.63 0.00 0.00 2.39
1547 1849 0.106268 ACCAATTCACAGTGCACCCA 60.106 50.000 14.63 0.00 0.00 4.51
1550 1852 1.032014 ACCACCAATTCACAGTGCAC 58.968 50.000 9.40 9.40 0.00 4.57
1651 1956 0.813821 GGGAAGCCAGATTGCAGTTC 59.186 55.000 0.00 0.00 0.00 3.01
1807 2115 9.401058 CTAATTAAAGAGAGGGTGTCATCAAAT 57.599 33.333 0.00 0.00 0.00 2.32
1838 2146 2.282820 GCTAGTGATAGTTGAACTGCGC 59.717 50.000 8.33 0.00 0.00 6.09
1909 2219 4.516698 TCACAGAGAAATGAAAAGAGGTGC 59.483 41.667 0.00 0.00 0.00 5.01
1910 2220 5.334724 GCTCACAGAGAAATGAAAAGAGGTG 60.335 44.000 0.00 0.00 0.00 4.00
1912 2222 5.002516 AGCTCACAGAGAAATGAAAAGAGG 58.997 41.667 0.00 0.00 0.00 3.69
2049 2359 6.203723 GCCACTTATTCTCTACTAAATGCCAG 59.796 42.308 0.00 0.00 0.00 4.85
2087 2397 2.368548 TCAGGTTGCACTGAGCTAAAGA 59.631 45.455 3.01 0.00 42.26 2.52
2115 2425 0.579630 CAGCGACGTTGTTGTGCTTA 59.420 50.000 11.24 0.00 32.66 3.09
2158 2468 8.161425 GGATATCCTGTTAAGGCCACTATTTAA 58.839 37.037 14.97 0.00 44.11 1.52
2196 2506 5.645497 CCTTTATCTACTTTCTGCAGCAAGT 59.355 40.000 29.92 29.92 35.74 3.16
2226 2536 6.952773 AACAACTTTGCACCTCTAATGTTA 57.047 33.333 0.00 0.00 0.00 2.41
2238 2548 4.693566 CCGAGGATAACTAACAACTTTGCA 59.306 41.667 0.00 0.00 0.00 4.08
2273 2583 4.078363 ACTTTGCACATTATCCGAAACG 57.922 40.909 0.00 0.00 0.00 3.60
2333 2647 3.385755 TCTCGAATCTGGCATTCATCTCA 59.614 43.478 2.13 0.00 0.00 3.27
2389 2703 1.630126 ATGCCATGGCTCGGTCTTCT 61.630 55.000 35.53 7.74 42.51 2.85
2422 2736 2.947652 CCGATGCACCTCTCATGAAATT 59.052 45.455 0.00 0.00 0.00 1.82
2430 2749 1.338200 ACTTGTTCCGATGCACCTCTC 60.338 52.381 0.00 0.00 0.00 3.20
2441 2760 0.606401 AGGGATGCACACTTGTTCCG 60.606 55.000 0.00 0.00 31.32 4.30
2457 2776 3.632145 ACACACTTCTGTAAAAGCAAGGG 59.368 43.478 0.00 0.00 0.00 3.95
2459 2778 5.525378 AGAGACACACTTCTGTAAAAGCAAG 59.475 40.000 0.00 0.00 0.00 4.01
2461 2780 5.023533 AGAGACACACTTCTGTAAAAGCA 57.976 39.130 0.00 0.00 0.00 3.91
2462 2781 5.993106 AAGAGACACACTTCTGTAAAAGC 57.007 39.130 0.00 0.00 0.00 3.51
2472 2791 4.077300 TCATCAGCAAAGAGACACACTT 57.923 40.909 0.00 0.00 0.00 3.16
2482 2801 3.620374 ACTCGCTAACATCATCAGCAAAG 59.380 43.478 0.00 0.00 34.94 2.77
2537 2856 3.895998 AGTTAGTACTCCCTCCGTTAGG 58.104 50.000 0.00 0.00 46.09 2.69
2538 2857 5.911378 AAAGTTAGTACTCCCTCCGTTAG 57.089 43.478 0.00 0.00 31.99 2.34
2539 2858 5.539955 ACAAAAGTTAGTACTCCCTCCGTTA 59.460 40.000 0.00 0.00 31.99 3.18
2540 2859 4.346127 ACAAAAGTTAGTACTCCCTCCGTT 59.654 41.667 0.00 0.00 31.99 4.44
2541 2860 3.899980 ACAAAAGTTAGTACTCCCTCCGT 59.100 43.478 0.00 0.00 31.99 4.69
2542 2861 4.532314 ACAAAAGTTAGTACTCCCTCCG 57.468 45.455 0.00 0.00 31.99 4.63
2543 2862 6.514541 GCAAAACAAAAGTTAGTACTCCCTCC 60.515 42.308 0.00 0.00 31.99 4.30
2544 2863 6.262496 AGCAAAACAAAAGTTAGTACTCCCTC 59.738 38.462 0.00 0.00 31.99 4.30
2545 2864 6.039382 CAGCAAAACAAAAGTTAGTACTCCCT 59.961 38.462 0.00 0.00 31.99 4.20
2546 2865 6.038936 TCAGCAAAACAAAAGTTAGTACTCCC 59.961 38.462 0.00 0.00 31.99 4.30
2547 2866 7.023197 TCAGCAAAACAAAAGTTAGTACTCC 57.977 36.000 0.00 0.00 31.99 3.85
2548 2867 8.342634 TCATCAGCAAAACAAAAGTTAGTACTC 58.657 33.333 0.00 0.00 31.99 2.59
2549 2868 8.220755 TCATCAGCAAAACAAAAGTTAGTACT 57.779 30.769 0.00 0.00 35.68 2.73
2550 2869 9.463443 AATCATCAGCAAAACAAAAGTTAGTAC 57.537 29.630 0.00 0.00 0.00 2.73
2746 3069 4.166725 ACCACATGAGAGAGAGAGAGAGAT 59.833 45.833 0.00 0.00 0.00 2.75
2747 3070 3.523157 ACCACATGAGAGAGAGAGAGAGA 59.477 47.826 0.00 0.00 0.00 3.10
2748 3071 3.628942 CACCACATGAGAGAGAGAGAGAG 59.371 52.174 0.00 0.00 0.00 3.20
2749 3072 3.265479 TCACCACATGAGAGAGAGAGAGA 59.735 47.826 0.00 0.00 31.91 3.10
2750 3073 3.619419 TCACCACATGAGAGAGAGAGAG 58.381 50.000 0.00 0.00 31.91 3.20
2751 3074 3.728385 TCACCACATGAGAGAGAGAGA 57.272 47.619 0.00 0.00 31.91 3.10
2809 3134 1.496001 TCATGCATGTGATTAGCCCCT 59.504 47.619 25.43 0.00 0.00 4.79
2810 3135 1.610522 GTCATGCATGTGATTAGCCCC 59.389 52.381 25.43 0.00 0.00 5.80
2844 3169 4.218417 ACCAAAGATAGCATGGTCACAAAC 59.782 41.667 0.00 0.00 43.90 2.93
2845 3170 4.406456 ACCAAAGATAGCATGGTCACAAA 58.594 39.130 0.00 0.00 43.90 2.83
2847 3172 3.719268 ACCAAAGATAGCATGGTCACA 57.281 42.857 0.00 0.00 43.90 3.58
2852 3177 3.243636 GCCATTGACCAAAGATAGCATGG 60.244 47.826 0.00 1.67 40.16 3.66
2853 3178 3.549423 CGCCATTGACCAAAGATAGCATG 60.549 47.826 0.00 0.00 0.00 4.06
2854 3179 2.620115 CGCCATTGACCAAAGATAGCAT 59.380 45.455 0.00 0.00 0.00 3.79
2855 3180 2.016318 CGCCATTGACCAAAGATAGCA 58.984 47.619 0.00 0.00 0.00 3.49
2856 3181 2.032178 GTCGCCATTGACCAAAGATAGC 59.968 50.000 0.00 0.00 32.61 2.97
2857 3182 3.310774 CAGTCGCCATTGACCAAAGATAG 59.689 47.826 0.00 0.00 39.77 2.08
2858 3183 3.270027 CAGTCGCCATTGACCAAAGATA 58.730 45.455 0.00 0.00 39.77 1.98
2902 3227 7.177568 AGTGAGTATGTGTATGAGAGAAGTGTT 59.822 37.037 0.00 0.00 0.00 3.32
2906 3236 7.326968 TGAGTGAGTATGTGTATGAGAGAAG 57.673 40.000 0.00 0.00 0.00 2.85
2907 3237 7.888250 ATGAGTGAGTATGTGTATGAGAGAA 57.112 36.000 0.00 0.00 0.00 2.87
2926 3256 2.289694 ACGCTCTGCCACTTTTATGAGT 60.290 45.455 0.00 0.00 0.00 3.41
2959 3289 1.350193 GTCATGTACAGACGTGCAGG 58.650 55.000 4.53 4.53 41.30 4.85
2971 3301 3.759086 GTGTGAGACTGAGAGGTCATGTA 59.241 47.826 0.00 0.00 38.57 2.29
3002 3332 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3003 3333 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3007 3337 4.160439 GTGTGAGAGAGAGAGAGAGAGAGA 59.840 50.000 0.00 0.00 0.00 3.10
3163 3496 5.047164 TGAACTTACTGCAGGATAACCGTAA 60.047 40.000 19.93 4.77 41.83 3.18
3201 3534 8.773033 AGAAACGGAGGGAGTATAACTTATTA 57.227 34.615 0.00 0.00 0.00 0.98
3210 3543 9.377238 ACTTATATTTAGAAACGGAGGGAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
3211 3544 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
3212 3545 7.201983 GGACTTATATTTAGAAACGGAGGGAGT 60.202 40.741 0.00 0.00 0.00 3.85
3213 3546 7.153315 GGACTTATATTTAGAAACGGAGGGAG 58.847 42.308 0.00 0.00 0.00 4.30
3214 3547 6.239120 CGGACTTATATTTAGAAACGGAGGGA 60.239 42.308 0.00 0.00 0.00 4.20
3215 3548 5.924825 CGGACTTATATTTAGAAACGGAGGG 59.075 44.000 0.00 0.00 0.00 4.30
3216 3549 6.510536 ACGGACTTATATTTAGAAACGGAGG 58.489 40.000 0.00 0.00 0.00 4.30
3217 3550 7.998753 AACGGACTTATATTTAGAAACGGAG 57.001 36.000 0.00 0.00 0.00 4.63
3218 3551 9.520204 CTAAACGGACTTATATTTAGAAACGGA 57.480 33.333 0.00 0.00 36.97 4.69
3219 3552 9.520204 TCTAAACGGACTTATATTTAGAAACGG 57.480 33.333 3.44 0.00 39.50 4.44
3231 3564 9.712305 CATATTGGAATCTCTAAACGGACTTAT 57.288 33.333 0.00 0.00 0.00 1.73
3232 3565 8.701895 ACATATTGGAATCTCTAAACGGACTTA 58.298 33.333 0.00 0.00 0.00 2.24
3233 3566 7.565680 ACATATTGGAATCTCTAAACGGACTT 58.434 34.615 0.00 0.00 0.00 3.01
3234 3567 7.125792 ACATATTGGAATCTCTAAACGGACT 57.874 36.000 0.00 0.00 0.00 3.85
3235 3568 8.142551 AGTACATATTGGAATCTCTAAACGGAC 58.857 37.037 0.00 0.00 0.00 4.79
3236 3569 8.246430 AGTACATATTGGAATCTCTAAACGGA 57.754 34.615 0.00 0.00 0.00 4.69
3237 3570 9.408069 GTAGTACATATTGGAATCTCTAAACGG 57.592 37.037 0.00 0.00 0.00 4.44
3238 3571 9.961265 TGTAGTACATATTGGAATCTCTAAACG 57.039 33.333 0.00 0.00 0.00 3.60
3243 3576 8.740906 CCGTATGTAGTACATATTGGAATCTCT 58.259 37.037 25.83 4.67 42.39 3.10
3244 3577 8.737175 TCCGTATGTAGTACATATTGGAATCTC 58.263 37.037 28.04 14.00 42.39 2.75
3245 3578 8.645814 TCCGTATGTAGTACATATTGGAATCT 57.354 34.615 28.04 7.52 42.39 2.40
3246 3579 7.488471 GCTCCGTATGTAGTACATATTGGAATC 59.512 40.741 28.87 23.28 42.54 2.52
3247 3580 7.039293 TGCTCCGTATGTAGTACATATTGGAAT 60.039 37.037 28.87 9.95 42.54 3.01
3248 3581 6.265876 TGCTCCGTATGTAGTACATATTGGAA 59.734 38.462 28.87 20.47 42.54 3.53
3249 3582 5.771165 TGCTCCGTATGTAGTACATATTGGA 59.229 40.000 28.11 28.11 42.39 3.53
3250 3583 6.020971 TGCTCCGTATGTAGTACATATTGG 57.979 41.667 24.89 24.89 42.39 3.16
3251 3584 7.940178 TTTGCTCCGTATGTAGTACATATTG 57.060 36.000 22.65 17.91 42.39 1.90
3252 3585 8.988934 CATTTTGCTCCGTATGTAGTACATATT 58.011 33.333 22.65 3.44 42.39 1.28
3253 3586 8.364894 TCATTTTGCTCCGTATGTAGTACATAT 58.635 33.333 22.65 4.14 42.39 1.78
3254 3587 7.718525 TCATTTTGCTCCGTATGTAGTACATA 58.281 34.615 17.33 17.33 39.88 2.29
3255 3588 6.578944 TCATTTTGCTCCGTATGTAGTACAT 58.421 36.000 19.36 19.36 42.35 2.29
3256 3589 5.968254 TCATTTTGCTCCGTATGTAGTACA 58.032 37.500 5.24 5.24 32.61 2.90
3257 3590 6.019801 CACTCATTTTGCTCCGTATGTAGTAC 60.020 42.308 0.00 0.00 0.00 2.73
3258 3591 6.040247 CACTCATTTTGCTCCGTATGTAGTA 58.960 40.000 0.00 0.00 0.00 1.82
3259 3592 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3260 3593 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3261 3594 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3262 3595 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3263 3596 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3264 3597 5.003804 AGTTTCACTCATTTTGCTCCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
3265 3598 4.385825 AGTTTCACTCATTTTGCTCCGTA 58.614 39.130 0.00 0.00 0.00 4.02
3266 3599 3.214328 AGTTTCACTCATTTTGCTCCGT 58.786 40.909 0.00 0.00 0.00 4.69
3267 3600 3.814945 GAGTTTCACTCATTTTGCTCCG 58.185 45.455 0.00 0.00 44.45 4.63
3296 3629 9.743581 TGGACTAAATACGGATGTATATAGACA 57.256 33.333 2.07 2.07 40.42 3.41
3305 3638 9.793259 ATTTCAATATGGACTAAATACGGATGT 57.207 29.630 0.00 0.00 0.00 3.06
3308 3641 9.706691 GAGATTTCAATATGGACTAAATACGGA 57.293 33.333 0.00 0.00 0.00 4.69
3309 3642 9.712305 AGAGATTTCAATATGGACTAAATACGG 57.288 33.333 0.00 0.00 0.00 4.02
3333 3666 9.635520 CCGTTTCTAAATACAAGTCTTTCTAGA 57.364 33.333 0.00 0.00 0.00 2.43
3334 3667 9.635520 TCCGTTTCTAAATACAAGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
3335 3668 9.635520 CTCCGTTTCTAAATACAAGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
3336 3669 7.603024 CCTCCGTTTCTAAATACAAGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
3337 3670 7.148457 CCCTCCGTTTCTAAATACAAGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
3338 3671 6.653740 CCCTCCGTTTCTAAATACAAGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
3339 3672 6.013984 TCCCTCCGTTTCTAAATACAAGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
3340 3673 5.482878 TCCCTCCGTTTCTAAATACAAGTCT 59.517 40.000 0.00 0.00 0.00 3.24
3341 3674 5.727434 TCCCTCCGTTTCTAAATACAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
3342 3675 5.750352 TCCCTCCGTTTCTAAATACAAGT 57.250 39.130 0.00 0.00 0.00 3.16
3343 3676 8.904099 ATATTCCCTCCGTTTCTAAATACAAG 57.096 34.615 0.00 0.00 0.00 3.16
3350 3683 9.908747 TCAATTTAATATTCCCTCCGTTTCTAA 57.091 29.630 0.00 0.00 0.00 2.10
3351 3684 9.908747 TTCAATTTAATATTCCCTCCGTTTCTA 57.091 29.630 0.00 0.00 0.00 2.10
3352 3685 8.817092 TTCAATTTAATATTCCCTCCGTTTCT 57.183 30.769 0.00 0.00 0.00 2.52
3353 3686 8.683615 ACTTCAATTTAATATTCCCTCCGTTTC 58.316 33.333 0.00 0.00 0.00 2.78
3354 3687 8.589701 ACTTCAATTTAATATTCCCTCCGTTT 57.410 30.769 0.00 0.00 0.00 3.60
3355 3688 8.589701 AACTTCAATTTAATATTCCCTCCGTT 57.410 30.769 0.00 0.00 0.00 4.44
3356 3689 8.053355 AGAACTTCAATTTAATATTCCCTCCGT 58.947 33.333 0.00 0.00 0.00 4.69
3357 3690 8.451908 AGAACTTCAATTTAATATTCCCTCCG 57.548 34.615 0.00 0.00 0.00 4.63
3396 3756 3.807622 TCGTCTTCACAAATCAACCTCAC 59.192 43.478 0.00 0.00 0.00 3.51
3442 3802 5.080969 TGCAAACTAAATAGTAGAGCCGT 57.919 39.130 0.00 0.00 34.99 5.68
3443 3803 6.604735 AATGCAAACTAAATAGTAGAGCCG 57.395 37.500 0.00 0.00 34.99 5.52
3444 3804 7.126398 CGAAATGCAAACTAAATAGTAGAGCC 58.874 38.462 0.00 0.00 34.99 4.70
3445 3805 7.685594 ACGAAATGCAAACTAAATAGTAGAGC 58.314 34.615 0.00 0.20 34.99 4.09
3446 3806 8.869897 TGACGAAATGCAAACTAAATAGTAGAG 58.130 33.333 0.00 0.00 34.99 2.43
3447 3807 8.766000 TGACGAAATGCAAACTAAATAGTAGA 57.234 30.769 0.00 0.00 34.99 2.59
3450 3810 8.395633 GGTATGACGAAATGCAAACTAAATAGT 58.604 33.333 0.00 0.00 38.39 2.12
3495 3882 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
3517 3904 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3520 3907 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3523 3910 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3526 3913 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3527 3914 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3529 3916 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3530 3917 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3532 3919 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3533 3920 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3535 3922 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3536 3923 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3538 3925 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3540 3927 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3543 3930 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3544 3931 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3545 3932 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3546 3933 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3547 3934 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3548 3935 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3549 3936 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3550 3937 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3553 3940 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3554 3941 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3555 3942 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3584 3971 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3586 3973 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
3587 3974 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
3588 3975 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
3589 3976 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
3590 3977 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
3591 3978 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
3592 3979 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
3593 3980 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
3594 3981 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
3595 3982 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
3611 3998 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
3612 3999 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3629 4016 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
3630 4017 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
3631 4018 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
3632 4019 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
3633 4020 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
3639 4026 7.909485 TTCTACTCCCTCCGTTTCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
3642 4029 5.626116 GCATTCTACTCCCTCCGTTTCTAAA 60.626 44.000 0.00 0.00 0.00 1.85
3645 4032 2.168728 GCATTCTACTCCCTCCGTTTCT 59.831 50.000 0.00 0.00 0.00 2.52
3646 4033 2.093658 TGCATTCTACTCCCTCCGTTTC 60.094 50.000 0.00 0.00 0.00 2.78
3647 4034 1.906574 TGCATTCTACTCCCTCCGTTT 59.093 47.619 0.00 0.00 0.00 3.60
3669 4056 6.365247 GGTTCTCATGATAAAATGCATGATGC 59.635 38.462 11.12 11.12 46.79 3.91
3670 4057 7.430441 TGGTTCTCATGATAAAATGCATGATG 58.570 34.615 0.00 0.00 46.79 3.07
3710 4100 8.903820 AGTGCTATTTTTCATACATCCCTTTAC 58.096 33.333 0.00 0.00 0.00 2.01
3743 4133 3.941483 GCTCACTCTTAGCCAAATAGCAA 59.059 43.478 0.00 0.00 33.73 3.91
3798 4188 6.220930 GCACATCATTGCATTTTATGATCCT 58.779 36.000 8.35 0.00 42.49 3.24
3823 4213 9.868389 GCATTTTTCTTTCTTTCTTTGGTTATG 57.132 29.630 0.00 0.00 0.00 1.90
3889 4279 1.985159 TGCTAACACCAATCCTCCAGT 59.015 47.619 0.00 0.00 0.00 4.00
3911 4301 2.806608 ATTTGCAGCACAGACAAAGG 57.193 45.000 0.00 0.00 36.78 3.11
3993 4384 7.047891 TGGTGATAGCTTACTGTTAATTCTGG 58.952 38.462 0.00 0.00 0.00 3.86
4046 4439 5.028549 TCTAGTGGTAGAGGGTTACTACG 57.971 47.826 0.00 0.00 39.26 3.51
4047 4440 8.986929 TTTATCTAGTGGTAGAGGGTTACTAC 57.013 38.462 0.00 0.00 38.73 2.73
4290 4703 3.709141 CCTGGGTCAAAGGAAAAAGGAAA 59.291 43.478 0.00 0.00 36.91 3.13
4342 4755 2.013400 TGTGCTGGTTGTACACTTGTG 58.987 47.619 0.00 0.00 36.38 3.33
4375 4788 9.264782 CACAAGAGTTTTTGCAACTAAAAATTG 57.735 29.630 0.00 6.84 40.43 2.32
4509 4929 2.409570 AGGGTGGTTAAGAGGCTATCC 58.590 52.381 0.00 0.00 0.00 2.59
4620 5041 4.650131 TGATCATATGCAGCCATTTTTGGA 59.350 37.500 0.00 0.00 32.85 3.53
4833 5255 0.179054 GGTTTGGATAGACTCGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
4947 5371 3.874543 CACTAACTGTAAACCTGTGTGCA 59.125 43.478 0.00 0.00 0.00 4.57
4989 5413 1.225704 GATCCAACTGGGCCAGAGG 59.774 63.158 38.99 34.18 35.18 3.69
5147 5573 4.234550 TGTAGTGATATGCCCCAGATCTT 58.765 43.478 0.00 0.00 33.78 2.40
5158 5585 9.838975 CTCTAGTTCTATTGCTGTAGTGATATG 57.161 37.037 0.00 0.00 0.00 1.78
5188 5623 3.715648 AATCAGTACCATCTCCCTCCT 57.284 47.619 0.00 0.00 0.00 3.69
5189 5624 4.779993 AAAATCAGTACCATCTCCCTCC 57.220 45.455 0.00 0.00 0.00 4.30
5192 5627 9.384764 GCTATATTAAAATCAGTACCATCTCCC 57.615 37.037 0.00 0.00 0.00 4.30
5193 5628 9.944376 TGCTATATTAAAATCAGTACCATCTCC 57.056 33.333 0.00 0.00 0.00 3.71
5195 5630 9.950496 CCTGCTATATTAAAATCAGTACCATCT 57.050 33.333 0.00 0.00 0.00 2.90
5241 5677 5.555966 TCATAAACCATGCTCTGTTACACA 58.444 37.500 0.00 0.00 34.35 3.72
5265 5701 9.595823 TTATTCCCGCTATCTTAATATAGTTGC 57.404 33.333 9.02 0.00 32.89 4.17
5273 5709 6.890293 GGGATCTTATTCCCGCTATCTTAAT 58.110 40.000 0.00 0.00 45.84 1.40
5274 5710 6.295719 GGGATCTTATTCCCGCTATCTTAA 57.704 41.667 0.00 0.00 45.84 1.85
5379 5839 7.361799 CGGCACATAACAGTAGTATAGCATCTA 60.362 40.741 0.00 0.00 0.00 1.98
5403 5863 4.033932 TGTTTCTGATATTGTCGCATTCGG 59.966 41.667 0.00 0.00 36.13 4.30
5405 5865 6.111768 AGTGTTTCTGATATTGTCGCATTC 57.888 37.500 0.00 0.00 0.00 2.67
5780 6745 1.453155 CATGTTGTAGCCCTGTCCAC 58.547 55.000 0.00 0.00 0.00 4.02
5978 6951 0.864659 TAGCTAGCCATGGTAGGGGA 59.135 55.000 14.67 0.00 34.62 4.81
6127 7180 6.151985 TCCGGTTCATAATAAATGTTGCAGTT 59.848 34.615 0.00 0.00 0.00 3.16
6133 7186 7.571025 ACTACCTCCGGTTCATAATAAATGTT 58.429 34.615 0.00 0.00 37.09 2.71
6148 7201 4.219944 TGCAATATAAGCTACTACCTCCGG 59.780 45.833 0.00 0.00 0.00 5.14
6296 7521 4.133078 CCAGAACTGAGCAGAAAGAAAGT 58.867 43.478 4.21 0.00 0.00 2.66
6478 7704 0.312416 GACGATGAGGATGGAGACCG 59.688 60.000 0.00 0.00 0.00 4.79
6599 7825 3.246301 ACCATGTGGGATATGGAGAGAG 58.754 50.000 10.72 0.00 46.42 3.20
6600 7826 3.350992 ACCATGTGGGATATGGAGAGA 57.649 47.619 10.72 0.00 46.42 3.10
7073 8300 0.751277 TGAAGTTGCTGGTGGTGGTG 60.751 55.000 0.00 0.00 0.00 4.17
7074 8301 0.751643 GTGAAGTTGCTGGTGGTGGT 60.752 55.000 0.00 0.00 0.00 4.16
7075 8302 0.751277 TGTGAAGTTGCTGGTGGTGG 60.751 55.000 0.00 0.00 0.00 4.61
7162 8389 8.429641 AGTGAAGGATAAAGAACTGTTAGTTGA 58.570 33.333 0.00 0.00 38.80 3.18
7187 8414 4.202441 ACCACCTGATGCAAGCTATAAAG 58.798 43.478 0.00 0.00 0.00 1.85
7198 8425 1.001641 AGCCTGAACCACCTGATGC 60.002 57.895 0.00 0.00 0.00 3.91
7199 8426 0.617413 AGAGCCTGAACCACCTGATG 59.383 55.000 0.00 0.00 0.00 3.07
7200 8427 2.254152 TAGAGCCTGAACCACCTGAT 57.746 50.000 0.00 0.00 0.00 2.90
7201 8428 1.902508 CTTAGAGCCTGAACCACCTGA 59.097 52.381 0.00 0.00 0.00 3.86
7202 8429 1.065854 CCTTAGAGCCTGAACCACCTG 60.066 57.143 0.00 0.00 0.00 4.00
7241 8470 1.067213 GCACTCCTGAACCTGTCTCTC 60.067 57.143 0.00 0.00 0.00 3.20
7461 8690 1.828595 GAGAGAAAGAGAGTGGGTCCC 59.171 57.143 0.00 0.00 0.00 4.46
7483 8712 1.467734 CATCAAAGCCTCTCTGCACAC 59.532 52.381 0.00 0.00 0.00 3.82
7486 8715 0.327259 AGCATCAAAGCCTCTCTGCA 59.673 50.000 0.00 0.00 34.23 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.