Multiple sequence alignment - TraesCS3B01G417600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G417600 chr3B 100.000 3718 0 0 1 3718 654435533 654431816 0.000000e+00 6866.0
1 TraesCS3B01G417600 chr3B 90.000 240 22 2 208 447 95571064 95571301 3.610000e-80 309.0
2 TraesCS3B01G417600 chr3B 91.628 215 18 0 233 447 220790997 220790783 7.810000e-77 298.0
3 TraesCS3B01G417600 chr3A 91.379 2981 155 33 781 3703 634945665 634942729 0.000000e+00 3988.0
4 TraesCS3B01G417600 chr3A 94.737 133 6 1 2 133 634945952 634945820 4.870000e-49 206.0
5 TraesCS3B01G417600 chr3D 91.010 1713 101 25 631 2309 495494225 495492532 0.000000e+00 2261.0
6 TraesCS3B01G417600 chr3D 85.619 452 46 10 2489 2929 495492492 495492049 1.220000e-124 457.0
7 TraesCS3B01G417600 chr3D 81.312 503 57 21 3133 3630 495491772 495491302 1.260000e-99 374.0
8 TraesCS3B01G417600 chr3D 92.453 106 5 3 15 119 495496733 495496630 8.320000e-32 148.0
9 TraesCS3B01G417600 chr3D 98.387 62 1 0 3634 3695 495491259 495491198 3.930000e-20 110.0
10 TraesCS3B01G417600 chr3D 87.500 72 8 1 137 208 575932861 575932791 8.560000e-12 82.4
11 TraesCS3B01G417600 chr6D 87.854 247 28 2 208 454 26117956 26117712 4.700000e-74 289.0
12 TraesCS3B01G417600 chr6D 92.157 153 10 2 3035 3185 303059856 303060008 8.090000e-52 215.0
13 TraesCS3B01G417600 chr6D 95.745 47 2 0 2374 2420 192109416 192109462 3.980000e-10 76.8
14 TraesCS3B01G417600 chr4B 88.991 218 20 4 234 447 347387995 347387778 2.200000e-67 267.0
15 TraesCS3B01G417600 chr4B 91.139 158 13 1 3035 3192 146469219 146469375 2.910000e-51 213.0
16 TraesCS3B01G417600 chr4B 89.062 64 7 0 2416 2479 605884969 605884906 3.080000e-11 80.5
17 TraesCS3B01G417600 chr4B 81.928 83 5 2 2374 2446 216903836 216903918 1.110000e-05 62.1
18 TraesCS3B01G417600 chr1D 86.179 246 32 2 208 451 465969367 465969612 7.920000e-67 265.0
19 TraesCS3B01G417600 chr1D 92.105 152 8 4 3035 3184 305226298 305226447 1.050000e-50 211.0
20 TraesCS3B01G417600 chr1D 87.283 173 18 4 446 617 191676595 191676764 1.050000e-45 195.0
21 TraesCS3B01G417600 chr2D 86.441 236 32 0 212 447 622392776 622392541 3.680000e-65 259.0
22 TraesCS3B01G417600 chr2D 89.820 167 16 1 3035 3200 79056170 79056336 2.910000e-51 213.0
23 TraesCS3B01G417600 chr2D 87.283 173 18 4 446 617 379784628 379784797 1.050000e-45 195.0
24 TraesCS3B01G417600 chr2D 86.628 172 21 2 446 617 244337549 244337718 4.900000e-44 189.0
25 TraesCS3B01G417600 chr7A 85.597 243 31 3 208 447 20479229 20478988 6.160000e-63 252.0
26 TraesCS3B01G417600 chr7B 85.417 240 35 0 208 447 714418622 714418861 2.220000e-62 250.0
27 TraesCS3B01G417600 chr4D 84.774 243 34 3 208 449 225230567 225230807 1.330000e-59 241.0
28 TraesCS3B01G417600 chr4D 87.791 172 19 2 446 617 367327073 367327242 2.260000e-47 200.0
29 TraesCS3B01G417600 chr1B 92.857 154 9 2 3037 3190 632021073 632020922 4.830000e-54 222.0
30 TraesCS3B01G417600 chr6A 92.715 151 11 0 3035 3185 411770256 411770406 6.250000e-53 219.0
31 TraesCS3B01G417600 chr7D 92.667 150 11 0 3035 3184 34757015 34756866 2.250000e-52 217.0
32 TraesCS3B01G417600 chr7D 86.628 172 21 2 446 617 472250647 472250478 4.900000e-44 189.0
33 TraesCS3B01G417600 chr2A 89.697 165 16 1 3037 3200 79316010 79316174 3.760000e-50 209.0
34 TraesCS3B01G417600 chr2A 93.023 43 3 0 2414 2456 724000275 724000233 3.100000e-06 63.9
35 TraesCS3B01G417600 chr6B 86.705 173 20 3 446 617 475484564 475484734 4.900000e-44 189.0
36 TraesCS3B01G417600 chr5D 86.628 172 21 2 446 617 71758965 71758796 4.900000e-44 189.0
37 TraesCS3B01G417600 chr5B 86.628 172 22 1 446 617 231436790 231436960 4.900000e-44 189.0
38 TraesCS3B01G417600 chr5B 79.885 174 27 6 304 473 659742445 659742276 1.810000e-23 121.0
39 TraesCS3B01G417600 chr4A 86.628 172 21 2 446 617 563503707 563503538 4.900000e-44 189.0
40 TraesCS3B01G417600 chr4A 86.538 52 5 2 138 188 468409515 468409565 5.190000e-04 56.5
41 TraesCS3B01G417600 chr2B 87.324 71 7 1 2414 2484 42142219 42142151 3.080000e-11 80.5
42 TraesCS3B01G417600 chr2B 100.000 30 0 0 159 188 62556355 62556384 5.190000e-04 56.5
43 TraesCS3B01G417600 chr1A 90.385 52 4 1 148 198 461049742 461049793 2.400000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G417600 chr3B 654431816 654435533 3717 True 6866 6866 100.0000 1 3718 1 chr3B.!!$R2 3717
1 TraesCS3B01G417600 chr3A 634942729 634945952 3223 True 2097 3988 93.0580 2 3703 2 chr3A.!!$R1 3701
2 TraesCS3B01G417600 chr3D 495491198 495496733 5535 True 670 2261 89.7562 15 3695 5 chr3D.!!$R2 3680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 2297 0.104671 CTTGCCTTGGGTGTGTTTGG 59.895 55.0 0.0 0.0 0.0 3.28 F
515 2449 0.104882 TACCCACACTCTTCCCCACA 60.105 55.0 0.0 0.0 0.0 4.17 F
1409 3408 0.179097 GGAGTCATCTTCCCGTGCTC 60.179 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 3402 0.034059 AAGTCACTGGAAGGAGCACG 59.966 55.000 0.0 0.0 39.3 5.34 R
1708 3707 1.404181 GCCACTACATCGTCTGCTTCA 60.404 52.381 0.0 0.0 0.0 3.02 R
3028 5162 0.679505 TGTGAACGGAGGGAACAGAG 59.320 55.000 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.082117 CGAATCGTCGGGTTGAAGGG 61.082 60.000 0.00 0.00 43.81 3.95
95 96 2.514824 GAATCGGCCCTCAGGTGC 60.515 66.667 0.00 0.00 34.57 5.01
130 132 6.512741 GCTTCACTTTCTGAAACAACGGATTA 60.513 38.462 0.00 0.00 38.47 1.75
132 134 7.504924 TCACTTTCTGAAACAACGGATTAAT 57.495 32.000 0.00 0.00 0.00 1.40
133 135 7.581476 TCACTTTCTGAAACAACGGATTAATC 58.419 34.615 6.93 6.93 0.00 1.75
134 136 7.444183 TCACTTTCTGAAACAACGGATTAATCT 59.556 33.333 14.95 0.00 0.00 2.40
135 137 7.746475 CACTTTCTGAAACAACGGATTAATCTC 59.254 37.037 14.95 3.88 0.00 2.75
137 139 9.151471 CTTTCTGAAACAACGGATTAATCTCTA 57.849 33.333 14.95 0.00 0.00 2.43
138 140 9.667107 TTTCTGAAACAACGGATTAATCTCTAT 57.333 29.630 14.95 0.00 0.00 1.98
139 141 8.873215 TCTGAAACAACGGATTAATCTCTATC 57.127 34.615 14.95 5.97 0.00 2.08
140 142 8.696374 TCTGAAACAACGGATTAATCTCTATCT 58.304 33.333 14.95 0.00 0.00 1.98
141 143 9.967346 CTGAAACAACGGATTAATCTCTATCTA 57.033 33.333 14.95 0.00 0.00 1.98
185 1586 8.376270 AGTTGATGATGATGATGTATCTGTCAT 58.624 33.333 10.78 10.78 40.86 3.06
189 1590 6.698380 TGATGATGATGTATCTGTCATCCTG 58.302 40.000 22.82 0.00 46.40 3.86
191 1592 4.345837 TGATGATGTATCTGTCATCCTGCA 59.654 41.667 11.52 0.00 46.40 4.41
192 1593 4.758773 TGATGTATCTGTCATCCTGCAA 57.241 40.909 0.00 0.00 40.38 4.08
193 1594 5.300411 TGATGTATCTGTCATCCTGCAAT 57.700 39.130 0.00 0.00 40.38 3.56
194 1595 6.423776 TGATGTATCTGTCATCCTGCAATA 57.576 37.500 0.00 0.00 40.38 1.90
195 1596 7.012661 TGATGTATCTGTCATCCTGCAATAT 57.987 36.000 0.00 0.00 40.38 1.28
196 1597 8.137745 TGATGTATCTGTCATCCTGCAATATA 57.862 34.615 0.00 0.00 40.38 0.86
197 1598 8.255905 TGATGTATCTGTCATCCTGCAATATAG 58.744 37.037 0.00 0.00 40.38 1.31
199 1600 4.277515 TCTGTCATCCTGCAATATAGCC 57.722 45.455 0.00 0.00 0.00 3.93
200 1601 3.906218 TCTGTCATCCTGCAATATAGCCT 59.094 43.478 0.00 0.00 0.00 4.58
201 1602 4.001652 CTGTCATCCTGCAATATAGCCTG 58.998 47.826 0.00 0.00 0.00 4.85
202 1603 3.392285 TGTCATCCTGCAATATAGCCTGT 59.608 43.478 0.00 0.00 0.00 4.00
203 1604 3.999663 GTCATCCTGCAATATAGCCTGTC 59.000 47.826 0.00 0.00 0.00 3.51
206 1607 1.344438 CCTGCAATATAGCCTGTCCGA 59.656 52.381 0.00 0.00 0.00 4.55
207 1608 2.027745 CCTGCAATATAGCCTGTCCGAT 60.028 50.000 0.00 0.00 0.00 4.18
208 1609 3.257393 CTGCAATATAGCCTGTCCGATC 58.743 50.000 0.00 0.00 0.00 3.69
209 1610 2.263077 GCAATATAGCCTGTCCGATCG 58.737 52.381 8.51 8.51 0.00 3.69
210 1611 2.094700 GCAATATAGCCTGTCCGATCGA 60.095 50.000 18.66 0.00 0.00 3.59
213 1614 4.640789 ATATAGCCTGTCCGATCGAATC 57.359 45.455 18.66 6.93 0.00 2.52
226 2160 2.660802 GAATCGGGTGGTGTCGGT 59.339 61.111 0.00 0.00 0.00 4.69
228 2162 2.444700 GAATCGGGTGGTGTCGGTGT 62.445 60.000 0.00 0.00 0.00 4.16
229 2163 2.047213 AATCGGGTGGTGTCGGTGTT 62.047 55.000 0.00 0.00 0.00 3.32
230 2164 2.047213 ATCGGGTGGTGTCGGTGTTT 62.047 55.000 0.00 0.00 0.00 2.83
231 2165 2.248835 CGGGTGGTGTCGGTGTTTC 61.249 63.158 0.00 0.00 0.00 2.78
232 2166 1.153127 GGGTGGTGTCGGTGTTTCA 60.153 57.895 0.00 0.00 0.00 2.69
233 2167 1.164041 GGGTGGTGTCGGTGTTTCAG 61.164 60.000 0.00 0.00 0.00 3.02
235 2169 0.655733 GTGGTGTCGGTGTTTCAGTG 59.344 55.000 0.00 0.00 0.00 3.66
236 2170 0.250793 TGGTGTCGGTGTTTCAGTGT 59.749 50.000 0.00 0.00 0.00 3.55
237 2171 0.935196 GGTGTCGGTGTTTCAGTGTC 59.065 55.000 0.00 0.00 0.00 3.67
238 2172 0.575390 GTGTCGGTGTTTCAGTGTCG 59.425 55.000 0.00 0.00 0.00 4.35
239 2173 0.173935 TGTCGGTGTTTCAGTGTCGT 59.826 50.000 0.00 0.00 0.00 4.34
240 2174 1.404748 TGTCGGTGTTTCAGTGTCGTA 59.595 47.619 0.00 0.00 0.00 3.43
241 2175 2.034939 TGTCGGTGTTTCAGTGTCGTAT 59.965 45.455 0.00 0.00 0.00 3.06
242 2176 2.660236 GTCGGTGTTTCAGTGTCGTATC 59.340 50.000 0.00 0.00 0.00 2.24
243 2177 1.990563 CGGTGTTTCAGTGTCGTATCC 59.009 52.381 0.00 0.00 0.00 2.59
244 2178 2.352421 CGGTGTTTCAGTGTCGTATCCT 60.352 50.000 0.00 0.00 0.00 3.24
245 2179 3.660865 GGTGTTTCAGTGTCGTATCCTT 58.339 45.455 0.00 0.00 0.00 3.36
247 2181 3.678548 GTGTTTCAGTGTCGTATCCTTCC 59.321 47.826 0.00 0.00 0.00 3.46
248 2182 3.576982 TGTTTCAGTGTCGTATCCTTCCT 59.423 43.478 0.00 0.00 0.00 3.36
250 2184 3.081710 TCAGTGTCGTATCCTTCCTGA 57.918 47.619 0.00 0.00 0.00 3.86
251 2185 3.427573 TCAGTGTCGTATCCTTCCTGAA 58.572 45.455 0.00 0.00 0.00 3.02
252 2186 3.444034 TCAGTGTCGTATCCTTCCTGAAG 59.556 47.826 0.00 0.00 38.14 3.02
275 2209 4.021925 GCCTTGGAGCCCACGTCT 62.022 66.667 0.00 0.00 30.78 4.18
278 2212 2.915659 TTGGAGCCCACGTCTCGT 60.916 61.111 0.00 0.00 42.36 4.18
280 2214 3.371063 GGAGCCCACGTCTCGTCA 61.371 66.667 0.00 0.00 38.32 4.35
281 2215 2.711922 GGAGCCCACGTCTCGTCAT 61.712 63.158 0.00 0.00 38.32 3.06
283 2217 0.669077 GAGCCCACGTCTCGTCATAT 59.331 55.000 0.00 0.00 38.32 1.78
284 2218 0.385751 AGCCCACGTCTCGTCATATG 59.614 55.000 0.00 0.00 38.32 1.78
285 2219 1.215655 GCCCACGTCTCGTCATATGC 61.216 60.000 0.00 0.00 38.32 3.14
287 2221 0.934901 CCACGTCTCGTCATATGCGG 60.935 60.000 16.01 9.36 38.32 5.69
288 2222 1.299165 ACGTCTCGTCATATGCGGC 60.299 57.895 16.01 0.00 33.69 6.53
289 2223 1.008424 CGTCTCGTCATATGCGGCT 60.008 57.895 16.01 0.00 0.00 5.52
290 2224 0.595053 CGTCTCGTCATATGCGGCTT 60.595 55.000 16.01 0.00 0.00 4.35
291 2225 1.132588 GTCTCGTCATATGCGGCTTC 58.867 55.000 16.01 5.19 0.00 3.86
293 2227 0.855349 CTCGTCATATGCGGCTTCAC 59.145 55.000 16.01 0.26 0.00 3.18
294 2228 0.459899 TCGTCATATGCGGCTTCACT 59.540 50.000 16.01 0.00 0.00 3.41
295 2229 1.134818 TCGTCATATGCGGCTTCACTT 60.135 47.619 16.01 0.00 0.00 3.16
296 2230 1.258982 CGTCATATGCGGCTTCACTTC 59.741 52.381 0.00 0.00 0.00 3.01
297 2231 2.555199 GTCATATGCGGCTTCACTTCT 58.445 47.619 0.00 0.00 0.00 2.85
298 2232 2.939103 GTCATATGCGGCTTCACTTCTT 59.061 45.455 0.00 0.00 0.00 2.52
299 2233 3.001736 GTCATATGCGGCTTCACTTCTTC 59.998 47.826 0.00 0.00 0.00 2.87
301 2235 1.160137 ATGCGGCTTCACTTCTTCAC 58.840 50.000 0.00 0.00 0.00 3.18
303 2237 1.230324 GCGGCTTCACTTCTTCACTT 58.770 50.000 0.00 0.00 0.00 3.16
304 2238 2.224185 TGCGGCTTCACTTCTTCACTTA 60.224 45.455 0.00 0.00 0.00 2.24
305 2239 2.413453 GCGGCTTCACTTCTTCACTTAG 59.587 50.000 0.00 0.00 0.00 2.18
306 2240 3.654414 CGGCTTCACTTCTTCACTTAGT 58.346 45.455 0.00 0.00 0.00 2.24
308 2242 4.381411 GGCTTCACTTCTTCACTTAGTGT 58.619 43.478 12.41 0.00 40.08 3.55
309 2243 4.816925 GGCTTCACTTCTTCACTTAGTGTT 59.183 41.667 12.41 0.00 40.08 3.32
310 2244 5.989777 GGCTTCACTTCTTCACTTAGTGTTA 59.010 40.000 12.41 1.41 40.08 2.41
313 2247 7.115663 GCTTCACTTCTTCACTTAGTGTTAGAG 59.884 40.741 12.41 9.06 40.08 2.43
314 2248 7.818997 TCACTTCTTCACTTAGTGTTAGAGA 57.181 36.000 12.41 8.82 40.08 3.10
315 2249 8.410673 TCACTTCTTCACTTAGTGTTAGAGAT 57.589 34.615 12.41 6.06 40.08 2.75
317 2251 7.543868 CACTTCTTCACTTAGTGTTAGAGATGG 59.456 40.741 12.41 9.56 35.65 3.51
318 2252 7.233757 ACTTCTTCACTTAGTGTTAGAGATGGT 59.766 37.037 12.41 10.03 34.79 3.55
319 2253 6.925211 TCTTCACTTAGTGTTAGAGATGGTG 58.075 40.000 12.41 0.00 34.79 4.17
320 2254 6.493802 TCTTCACTTAGTGTTAGAGATGGTGT 59.506 38.462 12.41 0.00 34.79 4.16
323 2257 5.120830 CACTTAGTGTTAGAGATGGTGTTGC 59.879 44.000 3.88 0.00 0.00 4.17
324 2258 5.012148 ACTTAGTGTTAGAGATGGTGTTGCT 59.988 40.000 0.00 0.00 0.00 3.91
326 2260 4.822026 AGTGTTAGAGATGGTGTTGCTAC 58.178 43.478 0.00 0.00 0.00 3.58
328 2262 2.579207 TAGAGATGGTGTTGCTACGC 57.421 50.000 3.06 3.06 0.00 4.42
329 2263 0.898320 AGAGATGGTGTTGCTACGCT 59.102 50.000 11.51 0.00 35.12 5.07
330 2264 1.134965 AGAGATGGTGTTGCTACGCTC 60.135 52.381 11.51 2.79 35.12 5.03
331 2265 0.608130 AGATGGTGTTGCTACGCTCA 59.392 50.000 11.51 8.31 35.12 4.26
332 2266 1.001974 AGATGGTGTTGCTACGCTCAA 59.998 47.619 11.51 0.00 35.12 3.02
345 2279 2.423926 CGCTCAACGCCTATGTATCT 57.576 50.000 0.00 0.00 34.21 1.98
346 2280 2.743938 CGCTCAACGCCTATGTATCTT 58.256 47.619 0.00 0.00 34.21 2.40
348 2282 2.221981 GCTCAACGCCTATGTATCTTGC 59.778 50.000 0.00 0.00 0.00 4.01
349 2283 2.802816 CTCAACGCCTATGTATCTTGCC 59.197 50.000 0.00 0.00 0.00 4.52
350 2284 2.434336 TCAACGCCTATGTATCTTGCCT 59.566 45.455 0.00 0.00 0.00 4.75
351 2285 3.118408 TCAACGCCTATGTATCTTGCCTT 60.118 43.478 0.00 0.00 0.00 4.35
352 2286 2.838736 ACGCCTATGTATCTTGCCTTG 58.161 47.619 0.00 0.00 0.00 3.61
353 2287 2.146342 CGCCTATGTATCTTGCCTTGG 58.854 52.381 0.00 0.00 0.00 3.61
354 2288 2.508526 GCCTATGTATCTTGCCTTGGG 58.491 52.381 0.00 0.00 0.00 4.12
355 2289 2.158608 GCCTATGTATCTTGCCTTGGGT 60.159 50.000 0.00 0.00 0.00 4.51
357 2291 3.117888 CCTATGTATCTTGCCTTGGGTGT 60.118 47.826 0.00 0.00 0.00 4.16
358 2292 2.198827 TGTATCTTGCCTTGGGTGTG 57.801 50.000 0.00 0.00 0.00 3.82
359 2293 1.423541 TGTATCTTGCCTTGGGTGTGT 59.576 47.619 0.00 0.00 0.00 3.72
360 2294 2.158534 TGTATCTTGCCTTGGGTGTGTT 60.159 45.455 0.00 0.00 0.00 3.32
361 2295 2.086610 ATCTTGCCTTGGGTGTGTTT 57.913 45.000 0.00 0.00 0.00 2.83
362 2296 1.110442 TCTTGCCTTGGGTGTGTTTG 58.890 50.000 0.00 0.00 0.00 2.93
363 2297 0.104671 CTTGCCTTGGGTGTGTTTGG 59.895 55.000 0.00 0.00 0.00 3.28
364 2298 1.333636 TTGCCTTGGGTGTGTTTGGG 61.334 55.000 0.00 0.00 0.00 4.12
365 2299 1.760480 GCCTTGGGTGTGTTTGGGT 60.760 57.895 0.00 0.00 0.00 4.51
366 2300 2.026945 GCCTTGGGTGTGTTTGGGTG 62.027 60.000 0.00 0.00 0.00 4.61
367 2301 0.686112 CCTTGGGTGTGTTTGGGTGT 60.686 55.000 0.00 0.00 0.00 4.16
369 2303 0.251832 TTGGGTGTGTTTGGGTGTGT 60.252 50.000 0.00 0.00 0.00 3.72
370 2304 0.251832 TGGGTGTGTTTGGGTGTGTT 60.252 50.000 0.00 0.00 0.00 3.32
371 2305 0.174617 GGGTGTGTTTGGGTGTGTTG 59.825 55.000 0.00 0.00 0.00 3.33
372 2306 0.892063 GGTGTGTTTGGGTGTGTTGT 59.108 50.000 0.00 0.00 0.00 3.32
373 2307 1.403514 GGTGTGTTTGGGTGTGTTGTG 60.404 52.381 0.00 0.00 0.00 3.33
374 2308 0.244994 TGTGTTTGGGTGTGTTGTGC 59.755 50.000 0.00 0.00 0.00 4.57
375 2309 0.800300 GTGTTTGGGTGTGTTGTGCG 60.800 55.000 0.00 0.00 0.00 5.34
376 2310 1.226831 GTTTGGGTGTGTTGTGCGG 60.227 57.895 0.00 0.00 0.00 5.69
377 2311 2.418910 TTTGGGTGTGTTGTGCGGG 61.419 57.895 0.00 0.00 0.00 6.13
391 2325 4.659874 CGGGCGTGCGTTTGTGTC 62.660 66.667 0.00 0.00 0.00 3.67
392 2326 4.659874 GGGCGTGCGTTTGTGTCG 62.660 66.667 0.00 0.00 0.00 4.35
393 2327 4.659874 GGCGTGCGTTTGTGTCGG 62.660 66.667 0.00 0.00 0.00 4.79
394 2328 3.632107 GCGTGCGTTTGTGTCGGA 61.632 61.111 0.00 0.00 0.00 4.55
395 2329 2.950172 GCGTGCGTTTGTGTCGGAT 61.950 57.895 0.00 0.00 0.00 4.18
396 2330 1.154672 CGTGCGTTTGTGTCGGATG 60.155 57.895 0.00 0.00 0.00 3.51
397 2331 1.440353 GTGCGTTTGTGTCGGATGC 60.440 57.895 0.00 0.00 0.00 3.91
398 2332 1.596752 TGCGTTTGTGTCGGATGCT 60.597 52.632 0.00 0.00 0.00 3.79
399 2333 1.154413 GCGTTTGTGTCGGATGCTG 60.154 57.895 0.00 0.00 0.00 4.41
400 2334 1.841663 GCGTTTGTGTCGGATGCTGT 61.842 55.000 0.00 0.00 0.00 4.40
401 2335 0.586319 CGTTTGTGTCGGATGCTGTT 59.414 50.000 0.00 0.00 0.00 3.16
402 2336 1.660052 CGTTTGTGTCGGATGCTGTTG 60.660 52.381 0.00 0.00 0.00 3.33
403 2337 1.601903 GTTTGTGTCGGATGCTGTTGA 59.398 47.619 0.00 0.00 0.00 3.18
404 2338 2.183478 TTGTGTCGGATGCTGTTGAT 57.817 45.000 0.00 0.00 0.00 2.57
405 2339 1.725641 TGTGTCGGATGCTGTTGATC 58.274 50.000 0.00 0.00 0.00 2.92
406 2340 1.001860 TGTGTCGGATGCTGTTGATCA 59.998 47.619 0.00 0.00 0.00 2.92
407 2341 2.283298 GTGTCGGATGCTGTTGATCAT 58.717 47.619 0.00 0.00 0.00 2.45
408 2342 2.679837 GTGTCGGATGCTGTTGATCATT 59.320 45.455 0.00 0.00 0.00 2.57
409 2343 2.679336 TGTCGGATGCTGTTGATCATTG 59.321 45.455 0.00 0.00 0.00 2.82
410 2344 1.672363 TCGGATGCTGTTGATCATTGC 59.328 47.619 0.00 2.11 0.00 3.56
411 2345 1.674441 CGGATGCTGTTGATCATTGCT 59.326 47.619 13.60 3.20 0.00 3.91
412 2346 2.098607 CGGATGCTGTTGATCATTGCTT 59.901 45.455 13.60 8.97 0.00 3.91
413 2347 3.428452 CGGATGCTGTTGATCATTGCTTT 60.428 43.478 13.60 4.62 0.00 3.51
414 2348 4.201940 CGGATGCTGTTGATCATTGCTTTA 60.202 41.667 13.60 0.00 0.00 1.85
415 2349 5.506815 CGGATGCTGTTGATCATTGCTTTAT 60.507 40.000 13.60 2.87 0.00 1.40
416 2350 6.293571 CGGATGCTGTTGATCATTGCTTTATA 60.294 38.462 13.60 0.00 0.00 0.98
417 2351 7.574404 CGGATGCTGTTGATCATTGCTTTATAT 60.574 37.037 13.60 2.32 0.00 0.86
434 2368 2.754946 TATATAAAGCGGGGCGAAGG 57.245 50.000 0.00 0.00 0.00 3.46
446 2380 2.547026 GCGAAGGCCTTTTTCGGTA 58.453 52.632 21.54 0.00 45.50 4.02
447 2381 1.092348 GCGAAGGCCTTTTTCGGTAT 58.908 50.000 21.54 0.00 45.50 2.73
448 2382 2.282407 GCGAAGGCCTTTTTCGGTATA 58.718 47.619 21.54 0.00 45.50 1.47
450 2384 3.528532 CGAAGGCCTTTTTCGGTATAGT 58.471 45.455 21.54 0.00 42.63 2.12
452 2386 4.679905 CGAAGGCCTTTTTCGGTATAGTCT 60.680 45.833 21.54 0.00 42.63 3.24
454 2388 3.518303 AGGCCTTTTTCGGTATAGTCTGT 59.482 43.478 0.00 0.00 0.00 3.41
455 2389 3.869832 GGCCTTTTTCGGTATAGTCTGTC 59.130 47.826 0.00 0.00 0.00 3.51
456 2390 3.869832 GCCTTTTTCGGTATAGTCTGTCC 59.130 47.826 0.00 0.00 0.00 4.02
457 2391 4.622220 GCCTTTTTCGGTATAGTCTGTCCA 60.622 45.833 0.00 0.00 0.00 4.02
458 2392 5.484715 CCTTTTTCGGTATAGTCTGTCCAA 58.515 41.667 0.00 0.00 0.00 3.53
459 2393 6.113411 CCTTTTTCGGTATAGTCTGTCCAAT 58.887 40.000 0.00 0.00 0.00 3.16
460 2394 7.270047 CCTTTTTCGGTATAGTCTGTCCAATA 58.730 38.462 0.00 0.00 0.00 1.90
461 2395 7.931948 CCTTTTTCGGTATAGTCTGTCCAATAT 59.068 37.037 0.00 0.00 0.00 1.28
462 2396 9.976511 CTTTTTCGGTATAGTCTGTCCAATATA 57.023 33.333 0.00 0.00 0.00 0.86
490 2424 8.529424 TCTAACGGATAGAAAGGAAACTATGA 57.471 34.615 0.00 0.00 36.89 2.15
491 2425 8.411683 TCTAACGGATAGAAAGGAAACTATGAC 58.588 37.037 0.00 0.00 36.89 3.06
492 2426 6.540438 ACGGATAGAAAGGAAACTATGACA 57.460 37.500 0.00 0.00 42.68 3.58
493 2427 6.942976 ACGGATAGAAAGGAAACTATGACAA 58.057 36.000 0.00 0.00 42.68 3.18
494 2428 7.565680 ACGGATAGAAAGGAAACTATGACAAT 58.434 34.615 0.00 0.00 42.68 2.71
500 2434 8.349568 AGAAAGGAAACTATGACAATTTACCC 57.650 34.615 0.00 0.00 42.68 3.69
501 2435 7.947890 AGAAAGGAAACTATGACAATTTACCCA 59.052 33.333 0.00 0.00 42.68 4.51
502 2436 7.462571 AAGGAAACTATGACAATTTACCCAC 57.537 36.000 0.00 0.00 42.68 4.61
503 2437 6.548321 AGGAAACTATGACAATTTACCCACA 58.452 36.000 0.00 0.00 40.61 4.17
505 2439 6.433093 GGAAACTATGACAATTTACCCACACT 59.567 38.462 0.00 0.00 0.00 3.55
507 2441 6.374417 ACTATGACAATTTACCCACACTCT 57.626 37.500 0.00 0.00 0.00 3.24
508 2442 6.779860 ACTATGACAATTTACCCACACTCTT 58.220 36.000 0.00 0.00 0.00 2.85
509 2443 6.879458 ACTATGACAATTTACCCACACTCTTC 59.121 38.462 0.00 0.00 0.00 2.87
512 2446 3.089284 CAATTTACCCACACTCTTCCCC 58.911 50.000 0.00 0.00 0.00 4.81
513 2447 1.822425 TTTACCCACACTCTTCCCCA 58.178 50.000 0.00 0.00 0.00 4.96
515 2449 0.104882 TACCCACACTCTTCCCCACA 60.105 55.000 0.00 0.00 0.00 4.17
516 2450 0.772124 ACCCACACTCTTCCCCACAT 60.772 55.000 0.00 0.00 0.00 3.21
518 2452 1.203050 CCCACACTCTTCCCCACATTT 60.203 52.381 0.00 0.00 0.00 2.32
519 2453 1.888512 CCACACTCTTCCCCACATTTG 59.111 52.381 0.00 0.00 0.00 2.32
520 2454 1.270550 CACACTCTTCCCCACATTTGC 59.729 52.381 0.00 0.00 0.00 3.68
521 2455 1.133513 ACACTCTTCCCCACATTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
524 2458 2.042162 ACTCTTCCCCACATTTGCAGAT 59.958 45.455 0.00 0.00 0.00 2.90
526 2460 4.263905 ACTCTTCCCCACATTTGCAGATAA 60.264 41.667 0.00 0.00 0.00 1.75
527 2461 4.272489 TCTTCCCCACATTTGCAGATAAG 58.728 43.478 0.00 0.00 0.00 1.73
528 2462 3.017048 TCCCCACATTTGCAGATAAGG 57.983 47.619 0.00 0.00 0.00 2.69
530 2464 3.099141 CCCCACATTTGCAGATAAGGTT 58.901 45.455 6.43 0.00 0.00 3.50
531 2465 3.515104 CCCCACATTTGCAGATAAGGTTT 59.485 43.478 6.43 0.00 0.00 3.27
532 2466 4.020307 CCCCACATTTGCAGATAAGGTTTT 60.020 41.667 6.43 0.00 0.00 2.43
533 2467 5.170748 CCCACATTTGCAGATAAGGTTTTC 58.829 41.667 6.43 0.00 0.00 2.29
582 2516 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
583 2517 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
595 2529 8.938906 ACTCATACAAATGCATTTTGATTTTCC 58.061 29.630 21.95 0.00 46.36 3.13
596 2530 8.843885 TCATACAAATGCATTTTGATTTTCCA 57.156 26.923 21.95 0.00 46.36 3.53
597 2531 9.451002 TCATACAAATGCATTTTGATTTTCCAT 57.549 25.926 21.95 2.93 46.36 3.41
599 2533 6.915349 ACAAATGCATTTTGATTTTCCATGG 58.085 32.000 21.95 4.97 46.36 3.66
600 2534 6.715718 ACAAATGCATTTTGATTTTCCATGGA 59.284 30.769 21.95 11.44 46.36 3.41
601 2535 7.230913 ACAAATGCATTTTGATTTTCCATGGAA 59.769 29.630 23.63 23.63 46.36 3.53
602 2536 6.746745 ATGCATTTTGATTTTCCATGGAAC 57.253 33.333 27.04 15.92 33.41 3.62
603 2537 4.689812 TGCATTTTGATTTTCCATGGAACG 59.310 37.500 27.04 7.92 33.41 3.95
604 2538 4.435917 GCATTTTGATTTTCCATGGAACGC 60.436 41.667 27.04 18.03 33.41 4.84
606 2540 3.296322 TTGATTTTCCATGGAACGCAC 57.704 42.857 27.04 17.40 33.41 5.34
608 2542 0.525761 ATTTTCCATGGAACGCACGG 59.474 50.000 27.04 0.00 33.41 4.94
609 2543 1.519751 TTTTCCATGGAACGCACGGG 61.520 55.000 27.04 0.00 33.41 5.28
612 2546 3.133464 CATGGAACGCACGGGCAT 61.133 61.111 11.77 0.00 41.24 4.40
613 2547 2.361104 ATGGAACGCACGGGCATT 60.361 55.556 11.77 0.00 41.24 3.56
614 2548 1.976474 ATGGAACGCACGGGCATTT 60.976 52.632 11.77 0.51 41.24 2.32
615 2549 1.531739 ATGGAACGCACGGGCATTTT 61.532 50.000 11.77 0.00 41.24 1.82
616 2550 1.732683 GGAACGCACGGGCATTTTG 60.733 57.895 11.77 0.00 41.24 2.44
617 2551 1.732683 GAACGCACGGGCATTTTGG 60.733 57.895 11.77 0.00 41.24 3.28
618 2552 3.219645 AACGCACGGGCATTTTGGG 62.220 57.895 11.77 0.00 41.24 4.12
620 2554 4.001226 GCACGGGCATTTTGGGCA 62.001 61.111 3.77 0.00 40.72 5.36
621 2555 2.980475 CACGGGCATTTTGGGCAT 59.020 55.556 0.00 0.00 34.52 4.40
622 2556 1.153588 CACGGGCATTTTGGGCATC 60.154 57.895 0.00 0.00 34.52 3.91
626 2560 0.745486 GGGCATTTTGGGCATCTTGC 60.745 55.000 0.00 0.00 44.08 4.01
628 2562 1.481772 GGCATTTTGGGCATCTTGCTA 59.518 47.619 0.00 0.00 44.28 3.49
629 2563 2.482490 GGCATTTTGGGCATCTTGCTAG 60.482 50.000 0.00 0.00 44.28 3.42
630 2564 2.167075 GCATTTTGGGCATCTTGCTAGT 59.833 45.455 0.00 0.00 44.28 2.57
631 2565 3.368739 GCATTTTGGGCATCTTGCTAGTT 60.369 43.478 0.00 0.00 44.28 2.24
632 2566 4.142182 GCATTTTGGGCATCTTGCTAGTTA 60.142 41.667 0.00 0.00 44.28 2.24
633 2567 5.343249 CATTTTGGGCATCTTGCTAGTTAC 58.657 41.667 0.00 0.00 44.28 2.50
643 2577 6.404403 GCATCTTGCTAGTTACCCCTAAAAAC 60.404 42.308 0.00 0.00 40.96 2.43
663 2597 3.313274 CGGATTAATTACACACCGTGC 57.687 47.619 0.00 0.00 36.98 5.34
675 2609 0.511221 CACCGTGCCAAGAGTTAACG 59.489 55.000 0.00 0.00 0.00 3.18
676 2610 1.226030 ACCGTGCCAAGAGTTAACGC 61.226 55.000 0.43 0.43 33.07 4.84
682 2616 2.006888 GCCAAGAGTTAACGCTATGCA 58.993 47.619 20.54 0.00 0.00 3.96
892 2885 2.227194 CGGGACCATTTTAGCCCATAC 58.773 52.381 0.00 0.00 40.71 2.39
893 2886 2.422235 CGGGACCATTTTAGCCCATACA 60.422 50.000 0.00 0.00 40.71 2.29
914 2907 0.733150 GTTAGATGGGCCTTCGCAAC 59.267 55.000 17.70 17.70 38.69 4.17
990 2989 2.150014 ATCCCCTTCCCACCAAACCG 62.150 60.000 0.00 0.00 0.00 4.44
991 2990 2.836187 CCCCTTCCCACCAAACCGA 61.836 63.158 0.00 0.00 0.00 4.69
992 2991 1.303317 CCCTTCCCACCAAACCGAG 60.303 63.158 0.00 0.00 0.00 4.63
995 2994 1.515521 CTTCCCACCAAACCGAGCAC 61.516 60.000 0.00 0.00 0.00 4.40
1131 3130 0.966370 CTCCCTCGACGGTTTCCTCT 60.966 60.000 0.15 0.00 0.00 3.69
1156 3155 0.975040 AACCTCTGCGATCTCCAGCT 60.975 55.000 5.61 0.00 0.00 4.24
1158 3157 1.390383 CCTCTGCGATCTCCAGCTCA 61.390 60.000 5.61 0.00 0.00 4.26
1195 3194 1.228552 AGGCATTCCCGCAAACACT 60.229 52.632 0.00 0.00 39.21 3.55
1371 3370 2.737359 CGTTGTGGCCGTGAGTATACAT 60.737 50.000 5.50 0.00 0.00 2.29
1404 3403 2.770164 ACAAAGGAGTCATCTTCCCG 57.230 50.000 0.00 0.00 0.00 5.14
1406 3405 2.289694 ACAAAGGAGTCATCTTCCCGTG 60.290 50.000 0.00 0.00 0.00 4.94
1407 3406 0.250513 AAGGAGTCATCTTCCCGTGC 59.749 55.000 0.00 0.00 0.00 5.34
1408 3407 0.616111 AGGAGTCATCTTCCCGTGCT 60.616 55.000 0.00 0.00 0.00 4.40
1409 3408 0.179097 GGAGTCATCTTCCCGTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
1410 3409 0.179097 GAGTCATCTTCCCGTGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
1411 3410 0.616111 AGTCATCTTCCCGTGCTCCT 60.616 55.000 0.00 0.00 0.00 3.69
1412 3411 0.250513 GTCATCTTCCCGTGCTCCTT 59.749 55.000 0.00 0.00 0.00 3.36
1413 3412 0.537188 TCATCTTCCCGTGCTCCTTC 59.463 55.000 0.00 0.00 0.00 3.46
1420 3419 1.374758 CCGTGCTCCTTCCAGTGAC 60.375 63.158 0.00 0.00 0.00 3.67
1432 3431 7.225734 GCTCCTTCCAGTGACTTATTAATTCTC 59.774 40.741 0.00 0.00 0.00 2.87
1599 3598 2.187946 GGTGGACCAGAGATGGCG 59.812 66.667 0.00 0.00 35.64 5.69
1626 3625 3.980134 CAGTTGTGTTAATTGCGCAATCA 59.020 39.130 33.93 24.55 38.39 2.57
1708 3707 4.753610 CAGATTGTGCAAGTCGATGGATAT 59.246 41.667 0.00 0.00 0.00 1.63
1711 3710 4.135747 TGTGCAAGTCGATGGATATGAA 57.864 40.909 0.00 0.00 0.00 2.57
1717 3716 4.250116 AGTCGATGGATATGAAGCAGAC 57.750 45.455 0.00 0.00 0.00 3.51
1861 3860 0.181350 AGATTGGCCGATGGTCCTTC 59.819 55.000 11.28 0.00 0.00 3.46
1933 3932 6.757237 AGATTTGAGCCTCAGTGAGTATATG 58.243 40.000 18.74 4.31 0.00 1.78
2174 4221 1.135094 AGGAGTATGCCCAGGATGTG 58.865 55.000 0.00 0.00 0.00 3.21
2177 4224 2.292267 GAGTATGCCCAGGATGTGTTG 58.708 52.381 0.00 0.00 0.00 3.33
2183 4230 1.993956 CCCAGGATGTGTTGGTCAAA 58.006 50.000 0.00 0.00 32.40 2.69
2278 4326 5.121768 ACATACAAAACTTTCCCTTCGATCG 59.878 40.000 9.36 9.36 0.00 3.69
2378 4430 0.690762 AAACCTGCCATGTACTCCGT 59.309 50.000 0.00 0.00 0.00 4.69
2382 4434 2.106332 GCCATGTACTCCGTCCCG 59.894 66.667 0.00 0.00 0.00 5.14
2390 4442 2.424601 TGTACTCCGTCCCGAATTACTG 59.575 50.000 0.00 0.00 0.00 2.74
2417 4475 8.569641 GTCTTAGATTTGTCTAGATACGGACAT 58.430 37.037 0.00 0.00 41.27 3.06
2418 4476 8.568794 TCTTAGATTTGTCTAGATACGGACATG 58.431 37.037 0.00 0.00 41.27 3.21
2735 4803 8.135382 TCAACTAAGGACAGAAGCTAAATAGT 57.865 34.615 0.00 0.00 0.00 2.12
2890 4960 9.603921 AGAATTTTTGTCACAGATCATTGTTTT 57.396 25.926 0.00 0.00 0.00 2.43
2998 5132 5.215252 TCAGTTGAGTAGGAAGTTCTTGG 57.785 43.478 2.25 0.00 0.00 3.61
3005 5139 1.821088 AGGAAGTTCTTGGTCTGGGT 58.179 50.000 2.25 0.00 0.00 4.51
3028 5162 2.820037 GGTAGCTGCCGGTTGCTC 60.820 66.667 22.81 15.33 42.00 4.26
3032 5166 2.230994 TAGCTGCCGGTTGCTCTCTG 62.231 60.000 22.81 1.56 42.00 3.35
3033 5167 2.345244 CTGCCGGTTGCTCTCTGT 59.655 61.111 1.90 0.00 42.00 3.41
3174 5320 7.335627 TCCGAAACATCCTATATTTGTGAACT 58.664 34.615 0.00 0.00 0.00 3.01
3228 5374 7.885297 TCAATTTTTAGCAGAGTTTGTAGCAT 58.115 30.769 0.00 0.00 0.00 3.79
3229 5375 9.008965 TCAATTTTTAGCAGAGTTTGTAGCATA 57.991 29.630 0.00 0.00 0.00 3.14
3230 5376 9.282247 CAATTTTTAGCAGAGTTTGTAGCATAG 57.718 33.333 0.00 0.00 0.00 2.23
3231 5377 6.985188 TTTTAGCAGAGTTTGTAGCATAGG 57.015 37.500 0.00 0.00 0.00 2.57
3232 5378 5.677319 TTAGCAGAGTTTGTAGCATAGGT 57.323 39.130 0.00 0.00 0.00 3.08
3233 5379 6.785337 TTAGCAGAGTTTGTAGCATAGGTA 57.215 37.500 0.00 0.00 0.00 3.08
3234 5380 5.677319 AGCAGAGTTTGTAGCATAGGTAA 57.323 39.130 0.00 0.00 0.00 2.85
3235 5381 6.240549 AGCAGAGTTTGTAGCATAGGTAAT 57.759 37.500 0.00 0.00 0.00 1.89
3266 5418 4.399978 CAAACTATTGCCGTTAGTTTCGG 58.600 43.478 10.94 0.00 44.18 4.30
3267 5419 4.067192 AAACTATTGCCGTTAGTTTCGGT 58.933 39.130 8.97 0.00 43.11 4.69
3344 5497 4.221262 TGTGTGGTTTCGGTTATACTAGCT 59.779 41.667 0.00 0.00 0.00 3.32
3345 5498 5.418524 TGTGTGGTTTCGGTTATACTAGCTA 59.581 40.000 0.00 0.00 0.00 3.32
3346 5499 5.975939 GTGTGGTTTCGGTTATACTAGCTAG 59.024 44.000 19.44 19.44 0.00 3.42
3347 5500 4.981054 GTGGTTTCGGTTATACTAGCTAGC 59.019 45.833 20.91 6.62 0.00 3.42
3356 5509 7.610692 TCGGTTATACTAGCTAGCATTACTCAT 59.389 37.037 20.91 0.28 0.00 2.90
3393 5547 5.106515 GCAATTCTAGGTTCAGAACTGGAAC 60.107 44.000 13.13 0.00 42.99 3.62
3394 5548 6.234177 CAATTCTAGGTTCAGAACTGGAACT 58.766 40.000 13.13 5.94 43.20 3.01
3432 5586 0.899019 AACCAACCCACGCTGTTTTT 59.101 45.000 0.00 0.00 0.00 1.94
3467 5621 2.198827 CAGGTGATGCTGGGTACAAA 57.801 50.000 0.00 0.00 0.00 2.83
3521 5678 2.023771 CGTGCAGCGTCACAGTGAT 61.024 57.895 6.51 0.00 36.80 3.06
3524 5681 2.393768 GCAGCGTCACAGTGATGGG 61.394 63.158 21.96 9.34 34.08 4.00
3541 5698 2.579878 GGAGTGACCCATCGTCTCA 58.420 57.895 0.00 0.00 42.49 3.27
3558 5715 2.095461 CTCATCTCACCCGAAGACAGA 58.905 52.381 0.00 0.00 0.00 3.41
3703 5899 4.635765 GCTAATTGAATACTGTGCTGGTCA 59.364 41.667 0.00 0.00 0.00 4.02
3704 5900 5.297776 GCTAATTGAATACTGTGCTGGTCAT 59.702 40.000 0.00 0.00 0.00 3.06
3705 5901 5.571784 AATTGAATACTGTGCTGGTCATG 57.428 39.130 0.00 0.00 0.00 3.07
3706 5902 3.701205 TGAATACTGTGCTGGTCATGT 57.299 42.857 0.00 0.00 0.00 3.21
3707 5903 3.337358 TGAATACTGTGCTGGTCATGTG 58.663 45.455 0.00 0.00 0.00 3.21
3708 5904 3.244526 TGAATACTGTGCTGGTCATGTGT 60.245 43.478 0.00 0.00 0.00 3.72
3709 5905 2.168326 TACTGTGCTGGTCATGTGTG 57.832 50.000 0.00 0.00 0.00 3.82
3710 5906 0.181114 ACTGTGCTGGTCATGTGTGT 59.819 50.000 0.00 0.00 0.00 3.72
3711 5907 1.311859 CTGTGCTGGTCATGTGTGTT 58.688 50.000 0.00 0.00 0.00 3.32
3712 5908 1.002142 CTGTGCTGGTCATGTGTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
3713 5909 0.311790 GTGCTGGTCATGTGTGTTGG 59.688 55.000 0.00 0.00 0.00 3.77
3714 5910 0.106769 TGCTGGTCATGTGTGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
3715 5911 0.593128 GCTGGTCATGTGTGTTGGTC 59.407 55.000 0.00 0.00 0.00 4.02
3716 5912 1.815408 GCTGGTCATGTGTGTTGGTCT 60.815 52.381 0.00 0.00 0.00 3.85
3717 5913 1.875514 CTGGTCATGTGTGTTGGTCTG 59.124 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.250124 ACGATTCGCAAGGGTCACAA 60.250 50.000 5.86 0.00 38.47 3.33
54 55 2.592897 CGCCGTGCTGTATATATTCGTC 59.407 50.000 0.00 0.00 0.00 4.20
88 89 0.542938 AGCTCCACTACAGCACCTGA 60.543 55.000 0.00 0.00 39.56 3.86
95 96 3.993081 CAGAAAGTGAAGCTCCACTACAG 59.007 47.826 5.84 0.00 45.82 2.74
156 158 9.086758 ACAGATACATCATCATCATCAACTCTA 57.913 33.333 0.00 0.00 35.96 2.43
157 159 7.964624 ACAGATACATCATCATCATCAACTCT 58.035 34.615 0.00 0.00 35.96 3.24
159 161 7.732996 TGACAGATACATCATCATCATCAACT 58.267 34.615 0.00 0.00 35.96 3.16
160 162 7.958053 TGACAGATACATCATCATCATCAAC 57.042 36.000 0.00 0.00 35.96 3.18
161 163 8.773404 GATGACAGATACATCATCATCATCAA 57.227 34.615 20.66 0.00 46.98 2.57
173 1574 7.046652 GCTATATTGCAGGATGACAGATACAT 58.953 38.462 4.16 0.00 39.69 2.29
174 1575 6.401394 GCTATATTGCAGGATGACAGATACA 58.599 40.000 4.16 0.00 39.69 2.29
177 1578 4.535294 AGGCTATATTGCAGGATGACAGAT 59.465 41.667 11.27 0.00 39.69 2.90
178 1579 3.906218 AGGCTATATTGCAGGATGACAGA 59.094 43.478 11.27 0.00 39.69 3.41
179 1580 4.001652 CAGGCTATATTGCAGGATGACAG 58.998 47.826 11.27 0.00 39.69 3.51
185 1586 1.344438 CGGACAGGCTATATTGCAGGA 59.656 52.381 11.27 0.00 34.04 3.86
189 1590 2.094700 TCGATCGGACAGGCTATATTGC 60.095 50.000 16.41 0.00 0.00 3.56
191 1592 5.000012 GATTCGATCGGACAGGCTATATT 58.000 43.478 16.41 0.00 0.00 1.28
192 1593 4.640789 GATTCGATCGGACAGGCTATAT 57.359 45.455 16.41 0.00 0.00 0.86
206 1607 1.141019 CGACACCACCCGATTCGAT 59.859 57.895 7.83 0.00 0.00 3.59
207 1608 2.569657 CGACACCACCCGATTCGA 59.430 61.111 7.83 0.00 0.00 3.71
208 1609 2.508439 CCGACACCACCCGATTCG 60.508 66.667 0.00 0.00 0.00 3.34
209 1610 1.740296 CACCGACACCACCCGATTC 60.740 63.158 0.00 0.00 0.00 2.52
210 1611 2.047213 AACACCGACACCACCCGATT 62.047 55.000 0.00 0.00 0.00 3.34
213 1614 2.203098 AAACACCGACACCACCCG 60.203 61.111 0.00 0.00 0.00 5.28
222 2156 2.352030 GGATACGACACTGAAACACCGA 60.352 50.000 0.00 0.00 0.00 4.69
226 2160 3.576982 AGGAAGGATACGACACTGAAACA 59.423 43.478 0.00 0.00 46.39 2.83
228 2162 3.830178 TCAGGAAGGATACGACACTGAAA 59.170 43.478 0.00 0.00 46.39 2.69
229 2163 3.427573 TCAGGAAGGATACGACACTGAA 58.572 45.455 0.00 0.00 46.39 3.02
230 2164 3.081710 TCAGGAAGGATACGACACTGA 57.918 47.619 0.00 0.00 46.39 3.41
231 2165 3.775202 CTTCAGGAAGGATACGACACTG 58.225 50.000 1.01 0.00 46.39 3.66
258 2192 3.959991 GAGACGTGGGCTCCAAGGC 62.960 68.421 0.00 8.14 41.34 4.35
260 2194 2.125912 CGAGACGTGGGCTCCAAG 60.126 66.667 0.00 5.79 38.88 3.61
262 2196 3.371063 GACGAGACGTGGGCTCCA 61.371 66.667 0.00 0.00 41.37 3.86
263 2197 1.381928 TATGACGAGACGTGGGCTCC 61.382 60.000 0.00 0.00 41.37 4.70
264 2198 0.669077 ATATGACGAGACGTGGGCTC 59.331 55.000 0.00 0.00 41.37 4.70
265 2199 0.385751 CATATGACGAGACGTGGGCT 59.614 55.000 0.00 0.00 41.37 5.19
267 2201 0.934901 CGCATATGACGAGACGTGGG 60.935 60.000 6.97 0.00 41.37 4.61
269 2203 1.540607 GCCGCATATGACGAGACGTG 61.541 60.000 17.40 4.71 41.37 4.49
270 2204 1.299165 GCCGCATATGACGAGACGT 60.299 57.895 17.40 0.00 45.10 4.34
272 2206 1.132588 GAAGCCGCATATGACGAGAC 58.867 55.000 17.40 8.99 0.00 3.36
274 2208 0.855349 GTGAAGCCGCATATGACGAG 59.145 55.000 17.40 10.52 0.00 4.18
275 2209 0.459899 AGTGAAGCCGCATATGACGA 59.540 50.000 17.40 0.00 0.00 4.20
278 2212 2.988010 AGAAGTGAAGCCGCATATGA 57.012 45.000 6.97 0.00 0.00 2.15
280 2214 2.939103 GTGAAGAAGTGAAGCCGCATAT 59.061 45.455 0.00 0.00 0.00 1.78
281 2215 2.028112 AGTGAAGAAGTGAAGCCGCATA 60.028 45.455 0.00 0.00 0.00 3.14
283 2217 0.106708 AGTGAAGAAGTGAAGCCGCA 59.893 50.000 0.00 0.00 0.00 5.69
284 2218 1.230324 AAGTGAAGAAGTGAAGCCGC 58.770 50.000 0.00 0.00 0.00 6.53
285 2219 3.430218 CACTAAGTGAAGAAGTGAAGCCG 59.570 47.826 0.00 0.00 42.59 5.52
287 2221 5.993106 AACACTAAGTGAAGAAGTGAAGC 57.007 39.130 8.57 0.00 42.59 3.86
288 2222 8.353684 TCTCTAACACTAAGTGAAGAAGTGAAG 58.646 37.037 8.57 5.82 42.59 3.02
289 2223 8.234136 TCTCTAACACTAAGTGAAGAAGTGAA 57.766 34.615 8.57 0.00 42.59 3.18
290 2224 7.818997 TCTCTAACACTAAGTGAAGAAGTGA 57.181 36.000 8.57 0.00 42.59 3.41
291 2225 7.543868 CCATCTCTAACACTAAGTGAAGAAGTG 59.456 40.741 0.00 0.37 44.89 3.16
293 2227 7.543868 CACCATCTCTAACACTAAGTGAAGAAG 59.456 40.741 0.00 0.00 36.96 2.85
294 2228 7.015292 ACACCATCTCTAACACTAAGTGAAGAA 59.985 37.037 0.00 0.00 36.96 2.52
295 2229 6.493802 ACACCATCTCTAACACTAAGTGAAGA 59.506 38.462 0.00 0.00 36.96 2.87
296 2230 6.692486 ACACCATCTCTAACACTAAGTGAAG 58.308 40.000 0.00 0.00 36.96 3.02
297 2231 6.665992 ACACCATCTCTAACACTAAGTGAA 57.334 37.500 0.00 0.00 36.96 3.18
298 2232 6.455647 CAACACCATCTCTAACACTAAGTGA 58.544 40.000 0.00 0.00 36.96 3.41
299 2233 5.120830 GCAACACCATCTCTAACACTAAGTG 59.879 44.000 0.00 0.00 39.75 3.16
301 2235 5.482908 AGCAACACCATCTCTAACACTAAG 58.517 41.667 0.00 0.00 0.00 2.18
303 2237 5.392703 CGTAGCAACACCATCTCTAACACTA 60.393 44.000 0.00 0.00 0.00 2.74
304 2238 4.618460 CGTAGCAACACCATCTCTAACACT 60.618 45.833 0.00 0.00 0.00 3.55
305 2239 3.612860 CGTAGCAACACCATCTCTAACAC 59.387 47.826 0.00 0.00 0.00 3.32
306 2240 3.845178 CGTAGCAACACCATCTCTAACA 58.155 45.455 0.00 0.00 0.00 2.41
328 2262 2.802816 GGCAAGATACATAGGCGTTGAG 59.197 50.000 0.00 0.00 0.00 3.02
329 2263 2.434336 AGGCAAGATACATAGGCGTTGA 59.566 45.455 0.00 0.00 0.00 3.18
330 2264 2.838736 AGGCAAGATACATAGGCGTTG 58.161 47.619 0.00 0.00 0.00 4.10
331 2265 3.206150 CAAGGCAAGATACATAGGCGTT 58.794 45.455 0.00 0.00 33.41 4.84
332 2266 2.485479 CCAAGGCAAGATACATAGGCGT 60.485 50.000 0.00 0.00 0.00 5.68
335 2269 3.117888 ACACCCAAGGCAAGATACATAGG 60.118 47.826 0.00 0.00 0.00 2.57
336 2270 3.879295 CACACCCAAGGCAAGATACATAG 59.121 47.826 0.00 0.00 0.00 2.23
338 2272 2.041620 ACACACCCAAGGCAAGATACAT 59.958 45.455 0.00 0.00 0.00 2.29
339 2273 1.423541 ACACACCCAAGGCAAGATACA 59.576 47.619 0.00 0.00 0.00 2.29
341 2275 2.890311 CAAACACACCCAAGGCAAGATA 59.110 45.455 0.00 0.00 0.00 1.98
343 2277 1.110442 CAAACACACCCAAGGCAAGA 58.890 50.000 0.00 0.00 0.00 3.02
344 2278 0.104671 CCAAACACACCCAAGGCAAG 59.895 55.000 0.00 0.00 0.00 4.01
345 2279 1.333636 CCCAAACACACCCAAGGCAA 61.334 55.000 0.00 0.00 0.00 4.52
346 2280 1.760086 CCCAAACACACCCAAGGCA 60.760 57.895 0.00 0.00 0.00 4.75
348 2282 0.686112 ACACCCAAACACACCCAAGG 60.686 55.000 0.00 0.00 0.00 3.61
349 2283 0.459489 CACACCCAAACACACCCAAG 59.541 55.000 0.00 0.00 0.00 3.61
350 2284 0.251832 ACACACCCAAACACACCCAA 60.252 50.000 0.00 0.00 0.00 4.12
351 2285 0.251832 AACACACCCAAACACACCCA 60.252 50.000 0.00 0.00 0.00 4.51
352 2286 0.174617 CAACACACCCAAACACACCC 59.825 55.000 0.00 0.00 0.00 4.61
353 2287 0.892063 ACAACACACCCAAACACACC 59.108 50.000 0.00 0.00 0.00 4.16
354 2288 1.989430 CACAACACACCCAAACACAC 58.011 50.000 0.00 0.00 0.00 3.82
355 2289 0.244994 GCACAACACACCCAAACACA 59.755 50.000 0.00 0.00 0.00 3.72
357 2291 1.508545 CGCACAACACACCCAAACA 59.491 52.632 0.00 0.00 0.00 2.83
358 2292 1.226831 CCGCACAACACACCCAAAC 60.227 57.895 0.00 0.00 0.00 2.93
359 2293 2.418910 CCCGCACAACACACCCAAA 61.419 57.895 0.00 0.00 0.00 3.28
360 2294 2.830827 CCCGCACAACACACCCAA 60.831 61.111 0.00 0.00 0.00 4.12
364 2298 4.605967 CACGCCCGCACAACACAC 62.606 66.667 0.00 0.00 0.00 3.82
374 2308 4.659874 GACACAAACGCACGCCCG 62.660 66.667 0.00 0.00 0.00 6.13
375 2309 4.659874 CGACACAAACGCACGCCC 62.660 66.667 0.00 0.00 0.00 6.13
376 2310 4.659874 CCGACACAAACGCACGCC 62.660 66.667 0.00 0.00 0.00 5.68
377 2311 2.950172 ATCCGACACAAACGCACGC 61.950 57.895 0.00 0.00 0.00 5.34
378 2312 1.154672 CATCCGACACAAACGCACG 60.155 57.895 0.00 0.00 0.00 5.34
379 2313 1.440353 GCATCCGACACAAACGCAC 60.440 57.895 0.00 0.00 0.00 5.34
380 2314 1.596752 AGCATCCGACACAAACGCA 60.597 52.632 0.00 0.00 0.00 5.24
382 2316 0.586319 AACAGCATCCGACACAAACG 59.414 50.000 0.00 0.00 0.00 3.60
383 2317 1.601903 TCAACAGCATCCGACACAAAC 59.398 47.619 0.00 0.00 0.00 2.93
384 2318 1.960417 TCAACAGCATCCGACACAAA 58.040 45.000 0.00 0.00 0.00 2.83
385 2319 2.076100 GATCAACAGCATCCGACACAA 58.924 47.619 0.00 0.00 0.00 3.33
386 2320 1.001860 TGATCAACAGCATCCGACACA 59.998 47.619 0.00 0.00 0.00 3.72
387 2321 1.725641 TGATCAACAGCATCCGACAC 58.274 50.000 0.00 0.00 0.00 3.67
388 2322 2.679336 CAATGATCAACAGCATCCGACA 59.321 45.455 0.00 0.00 0.00 4.35
389 2323 2.540361 GCAATGATCAACAGCATCCGAC 60.540 50.000 0.00 0.00 0.00 4.79
390 2324 1.672363 GCAATGATCAACAGCATCCGA 59.328 47.619 0.00 0.00 0.00 4.55
391 2325 1.674441 AGCAATGATCAACAGCATCCG 59.326 47.619 16.47 0.00 0.00 4.18
392 2326 3.795623 AAGCAATGATCAACAGCATCC 57.204 42.857 16.47 0.00 0.00 3.51
411 2345 5.180271 CCTTCGCCCCGCTTTATATATAAA 58.820 41.667 15.47 15.47 0.00 1.40
412 2346 4.761975 CCTTCGCCCCGCTTTATATATAA 58.238 43.478 0.81 0.81 0.00 0.98
413 2347 3.431207 GCCTTCGCCCCGCTTTATATATA 60.431 47.826 0.00 0.00 0.00 0.86
414 2348 2.679930 GCCTTCGCCCCGCTTTATATAT 60.680 50.000 0.00 0.00 0.00 0.86
415 2349 1.338389 GCCTTCGCCCCGCTTTATATA 60.338 52.381 0.00 0.00 0.00 0.86
416 2350 0.605589 GCCTTCGCCCCGCTTTATAT 60.606 55.000 0.00 0.00 0.00 0.86
417 2351 1.227734 GCCTTCGCCCCGCTTTATA 60.228 57.895 0.00 0.00 0.00 0.98
428 2362 1.092348 ATACCGAAAAAGGCCTTCGC 58.908 50.000 20.79 10.21 43.35 4.70
430 2364 4.571176 CAGACTATACCGAAAAAGGCCTTC 59.429 45.833 20.79 5.52 33.69 3.46
432 2366 3.518303 ACAGACTATACCGAAAAAGGCCT 59.482 43.478 0.00 0.00 33.69 5.19
434 2368 3.869832 GGACAGACTATACCGAAAAAGGC 59.130 47.826 0.00 0.00 33.69 4.35
448 2382 9.702253 ATCCGTTAGATATATATTGGACAGACT 57.298 33.333 0.00 0.00 31.60 3.24
464 2398 9.144298 TCATAGTTTCCTTTCTATCCGTTAGAT 57.856 33.333 0.00 0.00 36.81 1.98
465 2399 8.411683 GTCATAGTTTCCTTTCTATCCGTTAGA 58.588 37.037 0.00 0.00 35.06 2.10
466 2400 8.195436 TGTCATAGTTTCCTTTCTATCCGTTAG 58.805 37.037 0.00 0.00 0.00 2.34
467 2401 8.070034 TGTCATAGTTTCCTTTCTATCCGTTA 57.930 34.615 0.00 0.00 0.00 3.18
468 2402 6.942976 TGTCATAGTTTCCTTTCTATCCGTT 58.057 36.000 0.00 0.00 0.00 4.44
469 2403 6.540438 TGTCATAGTTTCCTTTCTATCCGT 57.460 37.500 0.00 0.00 0.00 4.69
470 2404 8.438676 AATTGTCATAGTTTCCTTTCTATCCG 57.561 34.615 0.00 0.00 0.00 4.18
475 2409 7.947890 TGGGTAAATTGTCATAGTTTCCTTTCT 59.052 33.333 0.00 0.00 0.00 2.52
477 2411 7.507616 TGTGGGTAAATTGTCATAGTTTCCTTT 59.492 33.333 0.00 0.00 0.00 3.11
478 2412 7.007723 TGTGGGTAAATTGTCATAGTTTCCTT 58.992 34.615 0.00 0.00 0.00 3.36
479 2413 6.433093 GTGTGGGTAAATTGTCATAGTTTCCT 59.567 38.462 0.00 0.00 0.00 3.36
480 2414 6.433093 AGTGTGGGTAAATTGTCATAGTTTCC 59.567 38.462 0.00 0.00 0.00 3.13
482 2416 7.231467 AGAGTGTGGGTAAATTGTCATAGTTT 58.769 34.615 0.00 0.00 0.00 2.66
483 2417 6.779860 AGAGTGTGGGTAAATTGTCATAGTT 58.220 36.000 0.00 0.00 0.00 2.24
484 2418 6.374417 AGAGTGTGGGTAAATTGTCATAGT 57.626 37.500 0.00 0.00 0.00 2.12
485 2419 6.316390 GGAAGAGTGTGGGTAAATTGTCATAG 59.684 42.308 0.00 0.00 0.00 2.23
486 2420 6.177610 GGAAGAGTGTGGGTAAATTGTCATA 58.822 40.000 0.00 0.00 0.00 2.15
487 2421 5.010282 GGAAGAGTGTGGGTAAATTGTCAT 58.990 41.667 0.00 0.00 0.00 3.06
488 2422 4.394729 GGAAGAGTGTGGGTAAATTGTCA 58.605 43.478 0.00 0.00 0.00 3.58
489 2423 3.756963 GGGAAGAGTGTGGGTAAATTGTC 59.243 47.826 0.00 0.00 0.00 3.18
490 2424 3.499745 GGGGAAGAGTGTGGGTAAATTGT 60.500 47.826 0.00 0.00 0.00 2.71
491 2425 3.089284 GGGGAAGAGTGTGGGTAAATTG 58.911 50.000 0.00 0.00 0.00 2.32
492 2426 2.719705 TGGGGAAGAGTGTGGGTAAATT 59.280 45.455 0.00 0.00 0.00 1.82
493 2427 2.041216 GTGGGGAAGAGTGTGGGTAAAT 59.959 50.000 0.00 0.00 0.00 1.40
494 2428 1.422402 GTGGGGAAGAGTGTGGGTAAA 59.578 52.381 0.00 0.00 0.00 2.01
498 2432 0.405585 AATGTGGGGAAGAGTGTGGG 59.594 55.000 0.00 0.00 0.00 4.61
499 2433 1.888512 CAAATGTGGGGAAGAGTGTGG 59.111 52.381 0.00 0.00 0.00 4.17
500 2434 1.270550 GCAAATGTGGGGAAGAGTGTG 59.729 52.381 0.00 0.00 0.00 3.82
501 2435 1.133513 TGCAAATGTGGGGAAGAGTGT 60.134 47.619 0.00 0.00 0.00 3.55
502 2436 1.542915 CTGCAAATGTGGGGAAGAGTG 59.457 52.381 0.00 0.00 0.00 3.51
503 2437 1.425066 TCTGCAAATGTGGGGAAGAGT 59.575 47.619 0.00 0.00 0.00 3.24
505 2439 2.905415 ATCTGCAAATGTGGGGAAGA 57.095 45.000 0.00 0.00 0.00 2.87
507 2441 3.245586 ACCTTATCTGCAAATGTGGGGAA 60.246 43.478 0.00 0.00 0.00 3.97
508 2442 2.311542 ACCTTATCTGCAAATGTGGGGA 59.688 45.455 0.00 0.00 0.00 4.81
509 2443 2.738743 ACCTTATCTGCAAATGTGGGG 58.261 47.619 0.00 0.00 0.00 4.96
512 2446 6.029346 AGGAAAACCTTATCTGCAAATGTG 57.971 37.500 0.00 0.00 0.00 3.21
513 2447 6.570378 CGAAGGAAAACCTTATCTGCAAATGT 60.570 38.462 0.00 0.00 0.00 2.71
515 2449 5.476945 ACGAAGGAAAACCTTATCTGCAAAT 59.523 36.000 0.00 0.00 0.00 2.32
516 2450 4.825085 ACGAAGGAAAACCTTATCTGCAAA 59.175 37.500 0.00 0.00 0.00 3.68
518 2452 4.015872 ACGAAGGAAAACCTTATCTGCA 57.984 40.909 0.00 0.00 0.00 4.41
519 2453 5.372547 AAACGAAGGAAAACCTTATCTGC 57.627 39.130 0.00 0.00 0.00 4.26
520 2454 9.908152 AAATTAAACGAAGGAAAACCTTATCTG 57.092 29.630 0.00 0.00 0.00 2.90
557 2491 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
570 2504 8.937884 TGGAAAATCAAAATGCATTTGTATGAG 58.062 29.630 24.74 10.97 46.89 2.90
571 2505 8.843885 TGGAAAATCAAAATGCATTTGTATGA 57.156 26.923 24.74 22.77 46.89 2.15
572 2506 9.497030 CATGGAAAATCAAAATGCATTTGTATG 57.503 29.630 24.74 18.62 46.89 2.39
574 2508 7.881751 TCCATGGAAAATCAAAATGCATTTGTA 59.118 29.630 24.74 15.92 46.89 2.41
575 2509 6.715718 TCCATGGAAAATCAAAATGCATTTGT 59.284 30.769 24.74 12.30 46.89 2.83
576 2510 7.539366 GTTCCATGGAAAATCAAAATGCATTTG 59.461 33.333 28.64 17.67 41.51 2.32
577 2511 7.573469 CGTTCCATGGAAAATCAAAATGCATTT 60.573 33.333 28.64 18.99 35.75 2.32
578 2512 6.128227 CGTTCCATGGAAAATCAAAATGCATT 60.128 34.615 28.64 5.99 35.75 3.56
579 2513 5.352016 CGTTCCATGGAAAATCAAAATGCAT 59.648 36.000 28.64 0.00 35.75 3.96
580 2514 4.689812 CGTTCCATGGAAAATCAAAATGCA 59.310 37.500 28.64 0.00 35.75 3.96
581 2515 4.435917 GCGTTCCATGGAAAATCAAAATGC 60.436 41.667 28.64 16.87 35.75 3.56
582 2516 4.689812 TGCGTTCCATGGAAAATCAAAATG 59.310 37.500 28.64 10.93 35.75 2.32
583 2517 4.690280 GTGCGTTCCATGGAAAATCAAAAT 59.310 37.500 28.64 0.00 35.75 1.82
584 2518 4.054671 GTGCGTTCCATGGAAAATCAAAA 58.945 39.130 28.64 7.82 35.75 2.44
586 2520 2.351253 CGTGCGTTCCATGGAAAATCAA 60.351 45.455 28.64 10.24 35.75 2.57
588 2522 1.895051 CGTGCGTTCCATGGAAAATC 58.105 50.000 28.64 19.18 35.75 2.17
595 2529 2.211619 AAATGCCCGTGCGTTCCATG 62.212 55.000 0.00 0.00 45.88 3.66
596 2530 1.531739 AAAATGCCCGTGCGTTCCAT 61.532 50.000 0.00 0.00 45.88 3.41
597 2531 2.196925 AAAATGCCCGTGCGTTCCA 61.197 52.632 0.00 0.00 45.88 3.53
599 2533 1.732683 CCAAAATGCCCGTGCGTTC 60.733 57.895 0.00 0.00 45.88 3.95
601 2535 3.679738 CCCAAAATGCCCGTGCGT 61.680 61.111 0.00 0.00 41.78 5.24
603 2537 3.313713 ATGCCCAAAATGCCCGTGC 62.314 57.895 0.00 0.00 38.26 5.34
604 2538 1.153588 GATGCCCAAAATGCCCGTG 60.154 57.895 0.00 0.00 0.00 4.94
606 2540 0.460635 CAAGATGCCCAAAATGCCCG 60.461 55.000 0.00 0.00 0.00 6.13
608 2542 0.251073 AGCAAGATGCCCAAAATGCC 59.749 50.000 0.00 0.00 46.52 4.40
609 2543 2.167075 ACTAGCAAGATGCCCAAAATGC 59.833 45.455 0.00 0.00 46.52 3.56
612 2546 3.761752 GGTAACTAGCAAGATGCCCAAAA 59.238 43.478 0.00 0.00 46.52 2.44
613 2547 3.352648 GGTAACTAGCAAGATGCCCAAA 58.647 45.455 0.00 0.00 46.52 3.28
614 2548 2.356741 GGGTAACTAGCAAGATGCCCAA 60.357 50.000 4.33 0.00 46.03 4.12
615 2549 1.211949 GGGTAACTAGCAAGATGCCCA 59.788 52.381 4.33 0.00 46.03 5.36
616 2550 1.477014 GGGGTAACTAGCAAGATGCCC 60.477 57.143 0.00 0.96 46.52 5.36
617 2551 1.490910 AGGGGTAACTAGCAAGATGCC 59.509 52.381 0.00 0.00 46.52 4.40
618 2552 4.417426 TTAGGGGTAACTAGCAAGATGC 57.583 45.455 0.00 0.00 45.46 3.91
620 2554 5.878669 CGTTTTTAGGGGTAACTAGCAAGAT 59.121 40.000 0.00 0.00 0.00 2.40
621 2555 5.240121 CGTTTTTAGGGGTAACTAGCAAGA 58.760 41.667 0.00 0.00 0.00 3.02
622 2556 4.393990 CCGTTTTTAGGGGTAACTAGCAAG 59.606 45.833 0.00 0.00 0.00 4.01
626 2560 8.969260 ATTAATCCGTTTTTAGGGGTAACTAG 57.031 34.615 0.00 0.00 0.00 2.57
628 2562 9.177608 GTAATTAATCCGTTTTTAGGGGTAACT 57.822 33.333 0.00 0.00 0.00 2.24
629 2563 8.955388 TGTAATTAATCCGTTTTTAGGGGTAAC 58.045 33.333 0.00 0.00 0.00 2.50
630 2564 8.955388 GTGTAATTAATCCGTTTTTAGGGGTAA 58.045 33.333 0.00 0.00 0.00 2.85
631 2565 8.105829 TGTGTAATTAATCCGTTTTTAGGGGTA 58.894 33.333 0.00 0.00 0.00 3.69
632 2566 6.947158 TGTGTAATTAATCCGTTTTTAGGGGT 59.053 34.615 0.00 0.00 0.00 4.95
633 2567 7.252708 GTGTGTAATTAATCCGTTTTTAGGGG 58.747 38.462 0.00 0.00 0.00 4.79
643 2577 2.031191 GGCACGGTGTGTAATTAATCCG 59.969 50.000 10.24 8.91 42.94 4.18
663 2597 4.882671 ATTGCATAGCGTTAACTCTTGG 57.117 40.909 2.97 0.00 0.00 3.61
675 2609 1.672881 AGACAAGCCGAATTGCATAGC 59.327 47.619 0.00 0.00 33.28 2.97
676 2610 3.002042 CAGAGACAAGCCGAATTGCATAG 59.998 47.826 0.00 0.00 33.28 2.23
682 2616 4.008074 TCTTTCAGAGACAAGCCGAATT 57.992 40.909 0.00 0.00 0.00 2.17
815 2800 6.208599 TCCCATCTTAACAAAGTGGACATTTC 59.791 38.462 0.00 0.00 31.59 2.17
819 2804 4.394729 GTCCCATCTTAACAAAGTGGACA 58.605 43.478 13.91 0.00 40.52 4.02
820 2805 3.435671 CGTCCCATCTTAACAAAGTGGAC 59.564 47.826 0.00 0.00 38.09 4.02
892 2885 0.947244 GCGAAGGCCCATCTAACATG 59.053 55.000 0.00 0.00 0.00 3.21
893 2886 0.546122 TGCGAAGGCCCATCTAACAT 59.454 50.000 0.00 0.00 38.85 2.71
914 2907 1.531149 ACAGAAAACGCTGTTCGGATG 59.469 47.619 0.00 0.00 46.42 3.51
938 2931 0.474184 ATGTGGATAAGGGGCCGAAG 59.526 55.000 0.00 0.00 0.00 3.79
990 2989 2.034687 AGTGGCATGGTGGTGCTC 59.965 61.111 0.00 0.00 44.45 4.26
991 2990 2.282674 CAGTGGCATGGTGGTGCT 60.283 61.111 0.00 0.00 44.45 4.40
992 2991 4.060038 GCAGTGGCATGGTGGTGC 62.060 66.667 0.00 0.00 44.31 5.01
1131 3130 1.478510 GAGATCGCAGAGGTTGAAGGA 59.521 52.381 0.00 0.00 43.63 3.36
1371 3370 1.554822 CCTTTGTAGGGTCTGGGAGGA 60.555 57.143 0.00 0.00 37.94 3.71
1402 3401 1.374758 GTCACTGGAAGGAGCACGG 60.375 63.158 0.00 0.00 39.30 4.94
1403 3402 0.034059 AAGTCACTGGAAGGAGCACG 59.966 55.000 0.00 0.00 39.30 5.34
1404 3403 3.618690 ATAAGTCACTGGAAGGAGCAC 57.381 47.619 0.00 0.00 39.30 4.40
1406 3405 7.051000 AGAATTAATAAGTCACTGGAAGGAGC 58.949 38.462 3.26 0.00 39.30 4.70
1407 3406 8.482128 AGAGAATTAATAAGTCACTGGAAGGAG 58.518 37.037 3.26 0.00 39.30 3.69
1408 3407 8.380742 AGAGAATTAATAAGTCACTGGAAGGA 57.619 34.615 3.26 0.00 39.30 3.36
1409 3408 8.482128 AGAGAGAATTAATAAGTCACTGGAAGG 58.518 37.037 5.24 0.00 39.30 3.46
1410 3409 9.528018 GAGAGAGAATTAATAAGTCACTGGAAG 57.472 37.037 5.24 0.00 42.29 3.46
1411 3410 8.191446 CGAGAGAGAATTAATAAGTCACTGGAA 58.809 37.037 5.24 0.00 0.00 3.53
1412 3411 7.339721 ACGAGAGAGAATTAATAAGTCACTGGA 59.660 37.037 5.24 0.00 0.00 3.86
1413 3412 7.484975 ACGAGAGAGAATTAATAAGTCACTGG 58.515 38.462 5.24 4.65 0.00 4.00
1420 3419 7.763172 AGCACAACGAGAGAGAATTAATAAG 57.237 36.000 0.00 0.00 0.00 1.73
1432 3431 2.729467 CGAAGACCTAGCACAACGAGAG 60.729 54.545 0.00 0.00 0.00 3.20
1626 3625 2.854963 TGTGACAAAGAGAGCATTGCT 58.145 42.857 11.79 11.79 43.88 3.91
1708 3707 1.404181 GCCACTACATCGTCTGCTTCA 60.404 52.381 0.00 0.00 0.00 3.02
1711 3710 1.405821 GTAGCCACTACATCGTCTGCT 59.594 52.381 0.00 0.00 36.98 4.24
1717 3716 2.165641 TGTCAAGGTAGCCACTACATCG 59.834 50.000 7.05 0.00 38.58 3.84
1861 3860 4.143030 GCAACATAATGCCTCAGCGTATAG 60.143 45.833 0.00 0.00 44.31 1.31
1933 3932 6.109359 ACAGTTGCAGATTATCCTACAAGAC 58.891 40.000 0.00 0.00 0.00 3.01
2114 4161 5.646360 TGCAGCTGTATTAAGTAGGTTTTCC 59.354 40.000 16.64 0.00 41.05 3.13
2174 4221 5.376854 AGTAATCTGCATGTTTGACCAAC 57.623 39.130 0.00 0.00 35.71 3.77
2177 4224 4.168760 GCAAGTAATCTGCATGTTTGACC 58.831 43.478 0.00 0.00 0.00 4.02
2183 4230 4.764679 TTTTCGCAAGTAATCTGCATGT 57.235 36.364 0.00 0.00 39.48 3.21
2378 4430 6.070424 ACAAATCTAAGACCAGTAATTCGGGA 60.070 38.462 0.00 0.00 35.40 5.14
2390 4442 7.013083 TGTCCGTATCTAGACAAATCTAAGACC 59.987 40.741 0.00 0.00 39.96 3.85
2460 4518 4.914177 TTACCTCCGTCCCAAAGTATTT 57.086 40.909 0.00 0.00 40.26 1.40
2465 4523 4.482952 AAGTATTACCTCCGTCCCAAAG 57.517 45.455 0.00 0.00 0.00 2.77
2509 4569 5.126545 ACGTCCAGTATGCTACTACATTTGA 59.873 40.000 0.00 0.00 37.23 2.69
2735 4803 6.672266 TTGGTCATATTTGCTTTTTACCCA 57.328 33.333 0.00 0.00 0.00 4.51
2890 4960 9.715121 ACAAGACTTCGGTTTCAGTATTATTAA 57.285 29.630 0.00 0.00 0.00 1.40
2912 4982 3.748048 CCACACATGACCAGTCTAACAAG 59.252 47.826 0.00 0.00 0.00 3.16
2998 5132 2.483889 GCAGCTACCAGAATACCCAGAC 60.484 54.545 0.00 0.00 0.00 3.51
3005 5139 1.134521 CAACCGGCAGCTACCAGAATA 60.135 52.381 0.00 0.00 0.00 1.75
3028 5162 0.679505 TGTGAACGGAGGGAACAGAG 59.320 55.000 0.00 0.00 0.00 3.35
3032 5166 6.110707 TCTTATATTTGTGAACGGAGGGAAC 58.889 40.000 0.00 0.00 0.00 3.62
3033 5167 6.302535 TCTTATATTTGTGAACGGAGGGAA 57.697 37.500 0.00 0.00 0.00 3.97
3093 5232 5.054390 AGTGAACAAACACACGAAAATGT 57.946 34.783 0.00 0.00 42.45 2.71
3094 5233 5.092105 TGAGTGAACAAACACACGAAAATG 58.908 37.500 0.00 0.00 42.45 2.32
3096 5235 4.750952 TGAGTGAACAAACACACGAAAA 57.249 36.364 0.00 0.00 42.45 2.29
3100 5239 4.657055 TGAAATGAGTGAACAAACACACG 58.343 39.130 0.00 0.00 42.45 4.49
3174 5320 6.126768 CCCTTCTGTTAAATGATACTCCCTCA 60.127 42.308 0.00 0.00 0.00 3.86
3255 5407 5.005394 CCATGAATGACTACCGAAACTAACG 59.995 44.000 0.00 0.00 0.00 3.18
3344 5497 7.415095 GCCATAAACACACAATGAGTAATGCTA 60.415 37.037 0.00 0.00 0.00 3.49
3345 5498 6.625740 GCCATAAACACACAATGAGTAATGCT 60.626 38.462 0.00 0.00 0.00 3.79
3346 5499 5.516339 GCCATAAACACACAATGAGTAATGC 59.484 40.000 0.00 0.00 0.00 3.56
3347 5500 6.619744 TGCCATAAACACACAATGAGTAATG 58.380 36.000 0.00 0.00 0.00 1.90
3356 5509 5.772672 ACCTAGAATTGCCATAAACACACAA 59.227 36.000 0.00 0.00 0.00 3.33
3393 5547 2.675056 GGCACAGCTGCTGTTCGAG 61.675 63.158 31.20 20.81 42.59 4.04
3394 5548 1.815817 TAGGCACAGCTGCTGTTCGA 61.816 55.000 31.20 19.20 42.59 3.71
3410 5564 0.536460 AACAGCGTGGGTTGGTTAGG 60.536 55.000 0.00 0.00 0.00 2.69
3461 5615 0.309612 CACACCCCTGCGTTTTGTAC 59.690 55.000 0.00 0.00 0.00 2.90
3467 5621 4.265056 GGACCACACCCCTGCGTT 62.265 66.667 0.00 0.00 0.00 4.84
3474 5628 3.249189 TGCTCCTGGACCACACCC 61.249 66.667 0.00 0.00 0.00 4.61
3537 5694 2.095461 CTGTCTTCGGGTGAGATGAGA 58.905 52.381 0.00 0.00 0.00 3.27
3538 5695 2.095461 TCTGTCTTCGGGTGAGATGAG 58.905 52.381 0.00 0.00 0.00 2.90
3539 5696 1.819288 GTCTGTCTTCGGGTGAGATGA 59.181 52.381 0.00 0.00 0.00 2.92
3540 5697 1.546029 TGTCTGTCTTCGGGTGAGATG 59.454 52.381 0.00 0.00 0.00 2.90
3541 5698 1.546476 GTGTCTGTCTTCGGGTGAGAT 59.454 52.381 0.00 0.00 0.00 2.75
3558 5715 1.410517 CTGAGATAGCATGTCCGGTGT 59.589 52.381 0.00 0.00 0.00 4.16
3596 5753 7.233389 TGGCTCCTTTAAGATATGCTACTAG 57.767 40.000 0.00 0.00 0.00 2.57
3597 5754 7.070696 TGTTGGCTCCTTTAAGATATGCTACTA 59.929 37.037 0.00 0.00 0.00 1.82
3598 5755 6.126768 TGTTGGCTCCTTTAAGATATGCTACT 60.127 38.462 0.00 0.00 0.00 2.57
3599 5756 6.017852 GTGTTGGCTCCTTTAAGATATGCTAC 60.018 42.308 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.