Multiple sequence alignment - TraesCS3B01G417400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G417400 chr3B 100.000 4502 0 0 1 4502 654359489 654354988 0.000000e+00 8314.0
1 TraesCS3B01G417400 chr3B 99.076 1082 10 0 3421 4502 654346675 654345594 0.000000e+00 1943.0
2 TraesCS3B01G417400 chr3B 88.583 254 22 4 3789 4040 400325367 400325119 7.320000e-78 302.0
3 TraesCS3B01G417400 chr3B 100.000 67 0 0 1231 1297 654358193 654358127 1.700000e-24 124.0
4 TraesCS3B01G417400 chr3B 100.000 67 0 0 1297 1363 654358259 654358193 1.700000e-24 124.0
5 TraesCS3B01G417400 chr3B 90.196 51 5 0 1409 1459 654357937 654357887 2.910000e-07 67.6
6 TraesCS3B01G417400 chr3B 90.196 51 5 0 1553 1603 654358081 654358031 2.910000e-07 67.6
7 TraesCS3B01G417400 chr3D 95.083 3071 113 18 1466 4502 495322993 495319927 0.000000e+00 4800.0
8 TraesCS3B01G417400 chr3D 93.534 897 37 13 414 1303 495324008 495323126 0.000000e+00 1315.0
9 TraesCS3B01G417400 chr3D 92.411 224 8 5 1297 1511 495323198 495322975 1.220000e-80 311.0
10 TraesCS3B01G417400 chr3D 92.157 51 4 0 1409 1459 495322897 495322847 6.250000e-09 73.1
11 TraesCS3B01G417400 chr3D 92.308 52 2 2 1553 1603 495323077 495323027 6.250000e-09 73.1
12 TraesCS3B01G417400 chr4D 89.211 2484 172 32 1297 3717 450138025 450140475 0.000000e+00 3014.0
13 TraesCS3B01G417400 chr4D 85.175 742 83 20 564 1297 450137369 450138091 0.000000e+00 736.0
14 TraesCS3B01G417400 chr4D 85.490 255 36 1 3787 4040 395949211 395949465 9.600000e-67 265.0
15 TraesCS3B01G417400 chr4D 90.196 51 5 0 1553 1603 450138146 450138196 2.910000e-07 67.6
16 TraesCS3B01G417400 chr4B 88.536 2486 190 38 1294 3717 562880511 562882963 0.000000e+00 2924.0
17 TraesCS3B01G417400 chr4B 99.274 413 3 0 1 413 481231993 481232405 0.000000e+00 747.0
18 TraesCS3B01G417400 chr4B 85.040 742 87 17 564 1297 562879855 562880580 0.000000e+00 734.0
19 TraesCS3B01G417400 chr4B 88.235 51 6 0 1553 1603 562880635 562880685 1.350000e-05 62.1
20 TraesCS3B01G417400 chr4A 90.049 2251 178 19 1493 3720 16511988 16509761 0.000000e+00 2874.0
21 TraesCS3B01G417400 chr4A 99.041 417 4 0 1 417 729294614 729294198 0.000000e+00 749.0
22 TraesCS3B01G417400 chr4A 99.038 416 3 1 1 415 452351051 452350636 0.000000e+00 745.0
23 TraesCS3B01G417400 chr4A 86.025 551 64 11 759 1303 16512730 16512187 3.020000e-161 579.0
24 TraesCS3B01G417400 chr4A 84.581 227 23 6 1297 1511 16512259 16512033 9.810000e-52 215.0
25 TraesCS3B01G417400 chr3A 93.891 1768 74 9 1323 3059 634726060 634724296 0.000000e+00 2636.0
26 TraesCS3B01G417400 chr3A 93.225 1048 47 3 3057 4093 634712540 634711506 0.000000e+00 1520.0
27 TraesCS3B01G417400 chr3A 90.970 299 16 1 4165 4452 634711503 634711205 4.220000e-105 392.0
28 TraesCS3B01G417400 chr3A 100.000 43 0 0 1222 1264 634727356 634727314 3.730000e-11 80.5
29 TraesCS3B01G417400 chr3A 95.745 47 2 0 1257 1303 634726060 634726014 4.830000e-10 76.8
30 TraesCS3B01G417400 chr3A 100.000 34 0 0 1297 1330 634727347 634727314 3.760000e-06 63.9
31 TraesCS3B01G417400 chr3A 85.000 60 9 0 1409 1468 634725803 634725744 1.350000e-05 62.1
32 TraesCS3B01G417400 chr2B 99.279 416 3 0 1 416 77770430 77770845 0.000000e+00 752.0
33 TraesCS3B01G417400 chr2B 88.281 256 27 3 3789 4041 457345820 457346075 2.030000e-78 303.0
34 TraesCS3B01G417400 chr5A 99.274 413 3 0 1 413 554204926 554204514 0.000000e+00 747.0
35 TraesCS3B01G417400 chr2A 99.036 415 3 1 1 414 755847536 755847950 0.000000e+00 743.0
36 TraesCS3B01G417400 chr2A 88.235 255 28 2 3789 4041 522492940 522493194 2.030000e-78 303.0
37 TraesCS3B01G417400 chr7B 99.031 413 4 0 1 413 537251392 537250980 0.000000e+00 741.0
38 TraesCS3B01G417400 chr7A 99.031 413 4 0 1 413 732907932 732908344 0.000000e+00 741.0
39 TraesCS3B01G417400 chr6B 99.031 413 4 0 1 413 555205059 555205471 0.000000e+00 741.0
40 TraesCS3B01G417400 chr1B 88.163 245 23 6 3797 4038 340804709 340804468 2.050000e-73 287.0
41 TraesCS3B01G417400 chr2D 87.603 242 28 2 3798 4038 18206511 18206751 3.430000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G417400 chr3B 654354988 654359489 4501 True 1739.440000 8314 96.078400 1 4502 5 chr3B.!!$R3 4501
1 TraesCS3B01G417400 chr3B 654345594 654346675 1081 True 1943.000000 1943 99.076000 3421 4502 1 chr3B.!!$R2 1081
2 TraesCS3B01G417400 chr3D 495319927 495324008 4081 True 1314.440000 4800 93.098600 414 4502 5 chr3D.!!$R1 4088
3 TraesCS3B01G417400 chr4D 450137369 450140475 3106 False 1272.533333 3014 88.194000 564 3717 3 chr4D.!!$F2 3153
4 TraesCS3B01G417400 chr4B 562879855 562882963 3108 False 1240.033333 2924 87.270333 564 3717 3 chr4B.!!$F2 3153
5 TraesCS3B01G417400 chr4A 16509761 16512730 2969 True 1222.666667 2874 86.885000 759 3720 3 chr4A.!!$R3 2961
6 TraesCS3B01G417400 chr3A 634711205 634712540 1335 True 956.000000 1520 92.097500 3057 4452 2 chr3A.!!$R1 1395
7 TraesCS3B01G417400 chr3A 634724296 634727356 3060 True 583.860000 2636 94.927200 1222 3059 5 chr3A.!!$R2 1837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.035036 TTTGGATGGCGGTCGTGTAA 59.965 50.000 0.00 0.00 0.00 2.41 F
370 371 0.109458 CATGGCCGTATGCATCATGC 60.109 55.000 0.19 1.35 45.29 4.06 F
1786 3067 0.179034 GAGTGAGCCCCTTATGCAGG 60.179 60.000 0.00 0.00 43.49 4.85 F
2156 3446 1.079750 GAGAGGTTCCAGGTGTCGC 60.080 63.158 0.00 0.00 0.00 5.19 F
2970 4264 0.391228 GGAACCGGGTTGTGCAAATT 59.609 50.000 18.88 0.00 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 3067 0.035630 AAGGTGACTGCAGATGGAGC 60.036 55.000 23.35 10.12 42.68 4.70 R
2046 3336 1.355066 GCTTCGCTACTTGCTTCGCT 61.355 55.000 0.00 0.00 40.11 4.93 R
2667 3960 1.493022 ACAGGCTTACTTTCCACACCA 59.507 47.619 0.00 0.00 0.00 4.17 R
3137 4431 2.176045 TCCATCTTACGTTCTGCTCCA 58.824 47.619 0.00 0.00 0.00 3.86 R
4367 5701 0.863144 GACAAACGTTCCGCTGCTTA 59.137 50.000 0.00 0.00 0.00 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.664798 CGTCTTTAACAGATCAACAAATATCCA 58.335 33.333 0.00 0.00 32.60 3.41
33 34 8.991243 ACAGATCAACAAATATCCATGTTTTG 57.009 30.769 0.00 0.00 37.66 2.44
34 35 7.546667 ACAGATCAACAAATATCCATGTTTTGC 59.453 33.333 0.00 0.00 37.66 3.68
35 36 7.546316 CAGATCAACAAATATCCATGTTTTGCA 59.454 33.333 0.00 0.00 37.66 4.08
36 37 7.762615 AGATCAACAAATATCCATGTTTTGCAG 59.237 33.333 0.00 0.00 37.66 4.41
37 38 6.164876 TCAACAAATATCCATGTTTTGCAGG 58.835 36.000 0.00 0.00 37.66 4.85
38 39 5.743636 ACAAATATCCATGTTTTGCAGGT 57.256 34.783 0.00 0.00 34.47 4.00
39 40 6.112927 ACAAATATCCATGTTTTGCAGGTT 57.887 33.333 0.00 0.00 34.47 3.50
40 41 7.238486 ACAAATATCCATGTTTTGCAGGTTA 57.762 32.000 0.00 0.00 34.47 2.85
41 42 7.850193 ACAAATATCCATGTTTTGCAGGTTAT 58.150 30.769 0.00 0.00 34.47 1.89
42 43 7.981225 ACAAATATCCATGTTTTGCAGGTTATC 59.019 33.333 0.00 0.00 34.47 1.75
43 44 7.902920 AATATCCATGTTTTGCAGGTTATCT 57.097 32.000 0.00 0.00 0.00 1.98
44 45 7.902920 ATATCCATGTTTTGCAGGTTATCTT 57.097 32.000 0.00 0.00 0.00 2.40
45 46 5.643379 TCCATGTTTTGCAGGTTATCTTC 57.357 39.130 0.00 0.00 0.00 2.87
46 47 4.462483 TCCATGTTTTGCAGGTTATCTTCC 59.538 41.667 0.00 0.00 0.00 3.46
47 48 4.414852 CATGTTTTGCAGGTTATCTTCCG 58.585 43.478 0.00 0.00 0.00 4.30
48 49 3.745799 TGTTTTGCAGGTTATCTTCCGA 58.254 40.909 0.00 0.00 0.00 4.55
49 50 3.751175 TGTTTTGCAGGTTATCTTCCGAG 59.249 43.478 0.00 0.00 0.00 4.63
50 51 2.024176 TTGCAGGTTATCTTCCGAGC 57.976 50.000 0.00 0.00 0.00 5.03
51 52 0.901827 TGCAGGTTATCTTCCGAGCA 59.098 50.000 0.00 0.00 38.06 4.26
52 53 1.277842 TGCAGGTTATCTTCCGAGCAA 59.722 47.619 0.00 0.00 37.70 3.91
53 54 1.666189 GCAGGTTATCTTCCGAGCAAC 59.334 52.381 0.00 0.00 33.48 4.17
54 55 1.927174 CAGGTTATCTTCCGAGCAACG 59.073 52.381 0.00 0.00 42.18 4.10
71 72 3.274393 CGGCTCTTATCCGTTCCTG 57.726 57.895 0.00 0.00 41.85 3.86
72 73 0.249489 CGGCTCTTATCCGTTCCTGG 60.249 60.000 0.00 0.00 41.85 4.45
73 74 0.831307 GGCTCTTATCCGTTCCTGGT 59.169 55.000 0.00 0.00 0.00 4.00
74 75 1.202545 GGCTCTTATCCGTTCCTGGTC 60.203 57.143 0.00 0.00 0.00 4.02
75 76 1.536284 GCTCTTATCCGTTCCTGGTCG 60.536 57.143 0.00 0.28 0.00 4.79
76 77 0.458669 TCTTATCCGTTCCTGGTCGC 59.541 55.000 8.09 0.00 0.00 5.19
77 78 0.460311 CTTATCCGTTCCTGGTCGCT 59.540 55.000 8.09 2.34 0.00 4.93
78 79 1.679680 CTTATCCGTTCCTGGTCGCTA 59.320 52.381 8.09 1.14 0.00 4.26
79 80 1.027357 TATCCGTTCCTGGTCGCTAC 58.973 55.000 8.09 0.00 0.00 3.58
80 81 0.683504 ATCCGTTCCTGGTCGCTACT 60.684 55.000 8.09 0.00 0.00 2.57
81 82 1.139095 CCGTTCCTGGTCGCTACTC 59.861 63.158 8.09 0.00 0.00 2.59
82 83 1.592400 CCGTTCCTGGTCGCTACTCA 61.592 60.000 8.09 0.00 0.00 3.41
83 84 0.456312 CGTTCCTGGTCGCTACTCAC 60.456 60.000 0.00 0.00 0.00 3.51
84 85 0.889306 GTTCCTGGTCGCTACTCACT 59.111 55.000 0.00 0.00 0.00 3.41
85 86 1.135344 GTTCCTGGTCGCTACTCACTC 60.135 57.143 0.00 0.00 0.00 3.51
86 87 0.680280 TCCTGGTCGCTACTCACTCC 60.680 60.000 0.00 0.00 0.00 3.85
87 88 1.429825 CTGGTCGCTACTCACTCCG 59.570 63.158 0.00 0.00 0.00 4.63
88 89 1.002990 TGGTCGCTACTCACTCCGA 60.003 57.895 0.00 0.00 0.00 4.55
89 90 1.303799 TGGTCGCTACTCACTCCGAC 61.304 60.000 3.68 3.68 46.60 4.79
90 91 1.060622 GTCGCTACTCACTCCGACG 59.939 63.158 0.00 0.00 40.27 5.12
91 92 1.079612 TCGCTACTCACTCCGACGA 60.080 57.895 0.00 0.00 0.00 4.20
92 93 0.671472 TCGCTACTCACTCCGACGAA 60.671 55.000 0.00 0.00 0.00 3.85
93 94 0.247735 CGCTACTCACTCCGACGAAG 60.248 60.000 0.00 0.00 0.00 3.79
94 95 0.099082 GCTACTCACTCCGACGAAGG 59.901 60.000 0.00 0.00 0.00 3.46
95 96 0.099082 CTACTCACTCCGACGAAGGC 59.901 60.000 0.00 0.00 0.00 4.35
96 97 1.310933 TACTCACTCCGACGAAGGCC 61.311 60.000 0.00 0.00 0.00 5.19
97 98 2.599281 TCACTCCGACGAAGGCCA 60.599 61.111 5.01 0.00 0.00 5.36
98 99 2.125912 CACTCCGACGAAGGCCAG 60.126 66.667 5.01 0.00 0.00 4.85
99 100 3.382832 ACTCCGACGAAGGCCAGG 61.383 66.667 5.01 0.00 0.00 4.45
100 101 4.148825 CTCCGACGAAGGCCAGGG 62.149 72.222 5.01 0.00 0.00 4.45
101 102 4.689549 TCCGACGAAGGCCAGGGA 62.690 66.667 5.01 0.00 0.00 4.20
102 103 4.148825 CCGACGAAGGCCAGGGAG 62.149 72.222 5.01 0.00 0.00 4.30
103 104 4.821589 CGACGAAGGCCAGGGAGC 62.822 72.222 5.01 0.00 0.00 4.70
104 105 3.394836 GACGAAGGCCAGGGAGCT 61.395 66.667 5.01 0.00 0.00 4.09
105 106 2.930562 ACGAAGGCCAGGGAGCTT 60.931 61.111 5.01 0.00 0.00 3.74
106 107 2.352805 CGAAGGCCAGGGAGCTTT 59.647 61.111 5.01 0.00 34.33 3.51
107 108 1.303643 CGAAGGCCAGGGAGCTTTT 60.304 57.895 5.01 0.00 31.38 2.27
108 109 1.589716 CGAAGGCCAGGGAGCTTTTG 61.590 60.000 5.01 0.00 31.38 2.44
109 110 1.228988 AAGGCCAGGGAGCTTTTGG 60.229 57.895 5.01 7.51 35.06 3.28
110 111 2.023760 AAGGCCAGGGAGCTTTTGGT 62.024 55.000 5.01 0.00 34.43 3.67
111 112 1.533994 GGCCAGGGAGCTTTTGGTT 60.534 57.895 0.00 0.00 34.43 3.67
112 113 0.251608 GGCCAGGGAGCTTTTGGTTA 60.252 55.000 0.00 0.00 34.43 2.85
113 114 0.888619 GCCAGGGAGCTTTTGGTTAC 59.111 55.000 12.05 0.00 34.43 2.50
114 115 1.547901 GCCAGGGAGCTTTTGGTTACT 60.548 52.381 12.05 0.00 34.43 2.24
115 116 2.162681 CCAGGGAGCTTTTGGTTACTG 58.837 52.381 0.00 0.00 35.34 2.74
116 117 1.541588 CAGGGAGCTTTTGGTTACTGC 59.458 52.381 0.00 0.00 31.20 4.40
117 118 1.425448 AGGGAGCTTTTGGTTACTGCT 59.575 47.619 0.00 0.00 36.63 4.24
118 119 1.541588 GGGAGCTTTTGGTTACTGCTG 59.458 52.381 0.00 0.00 33.83 4.41
119 120 1.068264 GGAGCTTTTGGTTACTGCTGC 60.068 52.381 0.00 0.00 35.23 5.25
120 121 1.882623 GAGCTTTTGGTTACTGCTGCT 59.117 47.619 0.00 0.00 33.83 4.24
121 122 3.074412 GAGCTTTTGGTTACTGCTGCTA 58.926 45.455 0.00 0.00 33.83 3.49
122 123 3.690460 AGCTTTTGGTTACTGCTGCTAT 58.310 40.909 0.00 0.00 32.32 2.97
123 124 3.691609 AGCTTTTGGTTACTGCTGCTATC 59.308 43.478 0.00 0.00 32.32 2.08
124 125 3.181496 GCTTTTGGTTACTGCTGCTATCC 60.181 47.826 0.00 0.00 0.00 2.59
125 126 2.309528 TTGGTTACTGCTGCTATCCG 57.690 50.000 0.00 0.00 0.00 4.18
126 127 1.480789 TGGTTACTGCTGCTATCCGA 58.519 50.000 0.00 0.00 0.00 4.55
127 128 2.039418 TGGTTACTGCTGCTATCCGAT 58.961 47.619 0.00 0.00 0.00 4.18
128 129 2.224042 TGGTTACTGCTGCTATCCGATG 60.224 50.000 0.00 0.00 0.00 3.84
129 130 2.408050 GTTACTGCTGCTATCCGATGG 58.592 52.381 0.00 0.00 0.00 3.51
130 131 0.969149 TACTGCTGCTATCCGATGGG 59.031 55.000 0.00 0.00 0.00 4.00
140 141 2.746697 TCCGATGGGAGATGGTAGC 58.253 57.895 0.00 0.00 37.43 3.58
141 142 0.188587 TCCGATGGGAGATGGTAGCT 59.811 55.000 0.00 0.00 37.43 3.32
142 143 0.605589 CCGATGGGAGATGGTAGCTC 59.394 60.000 0.00 0.00 34.06 4.09
143 144 0.242286 CGATGGGAGATGGTAGCTCG 59.758 60.000 0.00 0.00 33.19 5.03
144 145 0.605589 GATGGGAGATGGTAGCTCGG 59.394 60.000 0.00 0.00 33.19 4.63
145 146 0.833834 ATGGGAGATGGTAGCTCGGG 60.834 60.000 0.00 0.00 33.19 5.14
146 147 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
147 148 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
148 149 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
149 150 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
150 151 3.372784 GGGAGATGGTAGCTCGGGATATA 60.373 52.174 0.00 0.00 33.19 0.86
151 152 4.475345 GGAGATGGTAGCTCGGGATATAT 58.525 47.826 0.00 0.00 33.19 0.86
152 153 4.896482 GGAGATGGTAGCTCGGGATATATT 59.104 45.833 0.00 0.00 33.19 1.28
153 154 5.010213 GGAGATGGTAGCTCGGGATATATTC 59.990 48.000 0.00 0.00 33.19 1.75
154 155 5.519808 AGATGGTAGCTCGGGATATATTCA 58.480 41.667 0.00 0.00 0.00 2.57
155 156 5.596361 AGATGGTAGCTCGGGATATATTCAG 59.404 44.000 0.00 0.00 0.00 3.02
156 157 3.447586 TGGTAGCTCGGGATATATTCAGC 59.552 47.826 0.00 0.00 0.00 4.26
157 158 3.181474 GGTAGCTCGGGATATATTCAGCC 60.181 52.174 0.00 0.00 0.00 4.85
158 159 1.478510 AGCTCGGGATATATTCAGCCG 59.521 52.381 0.00 0.00 32.31 5.52
159 160 1.471676 GCTCGGGATATATTCAGCCGG 60.472 57.143 0.00 0.00 32.05 6.13
160 161 1.825474 CTCGGGATATATTCAGCCGGT 59.175 52.381 1.90 0.00 32.05 5.28
161 162 2.233922 CTCGGGATATATTCAGCCGGTT 59.766 50.000 1.90 0.00 32.05 4.44
162 163 2.635915 TCGGGATATATTCAGCCGGTTT 59.364 45.455 1.90 0.00 32.05 3.27
163 164 2.742053 CGGGATATATTCAGCCGGTTTG 59.258 50.000 1.90 2.01 0.00 2.93
164 165 3.081804 GGGATATATTCAGCCGGTTTGG 58.918 50.000 1.90 0.00 42.50 3.28
165 166 3.244770 GGGATATATTCAGCCGGTTTGGA 60.245 47.826 1.90 0.00 42.00 3.53
166 167 4.567747 GGGATATATTCAGCCGGTTTGGAT 60.568 45.833 1.90 5.17 42.00 3.41
173 174 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
174 175 3.496131 CGGTTTGGATGGCGGTCG 61.496 66.667 0.00 0.00 0.00 4.79
175 176 2.359478 GGTTTGGATGGCGGTCGT 60.359 61.111 0.00 0.00 0.00 4.34
176 177 2.686816 GGTTTGGATGGCGGTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
177 178 1.964373 GTTTGGATGGCGGTCGTGT 60.964 57.895 0.00 0.00 0.00 4.49
178 179 0.671163 GTTTGGATGGCGGTCGTGTA 60.671 55.000 0.00 0.00 0.00 2.90
179 180 0.035036 TTTGGATGGCGGTCGTGTAA 59.965 50.000 0.00 0.00 0.00 2.41
180 181 0.671163 TTGGATGGCGGTCGTGTAAC 60.671 55.000 0.00 0.00 0.00 2.50
181 182 1.079681 GGATGGCGGTCGTGTAACA 60.080 57.895 0.00 0.00 35.74 2.41
182 183 1.082117 GGATGGCGGTCGTGTAACAG 61.082 60.000 0.00 0.00 35.74 3.16
183 184 1.079405 ATGGCGGTCGTGTAACAGG 60.079 57.895 0.00 0.00 35.74 4.00
184 185 1.537814 ATGGCGGTCGTGTAACAGGA 61.538 55.000 0.00 0.00 35.74 3.86
185 186 1.217244 GGCGGTCGTGTAACAGGAT 59.783 57.895 0.00 0.00 35.74 3.24
186 187 0.457035 GGCGGTCGTGTAACAGGATA 59.543 55.000 0.00 0.00 35.74 2.59
187 188 1.535437 GGCGGTCGTGTAACAGGATAG 60.535 57.143 0.00 0.00 35.74 2.08
188 189 1.535437 GCGGTCGTGTAACAGGATAGG 60.535 57.143 0.00 0.00 35.74 2.57
189 190 1.535437 CGGTCGTGTAACAGGATAGGC 60.535 57.143 0.00 0.00 35.74 3.93
190 191 1.479323 GGTCGTGTAACAGGATAGGCA 59.521 52.381 0.00 0.00 35.74 4.75
191 192 2.093869 GGTCGTGTAACAGGATAGGCAA 60.094 50.000 0.00 0.00 35.74 4.52
192 193 3.431766 GGTCGTGTAACAGGATAGGCAAT 60.432 47.826 0.00 0.00 35.74 3.56
193 194 4.189231 GTCGTGTAACAGGATAGGCAATT 58.811 43.478 0.00 0.00 35.74 2.32
194 195 5.353938 GTCGTGTAACAGGATAGGCAATTA 58.646 41.667 0.00 0.00 35.74 1.40
195 196 5.462398 GTCGTGTAACAGGATAGGCAATTAG 59.538 44.000 0.00 0.00 35.74 1.73
196 197 5.128171 TCGTGTAACAGGATAGGCAATTAGT 59.872 40.000 0.00 0.00 35.74 2.24
197 198 5.815740 CGTGTAACAGGATAGGCAATTAGTT 59.184 40.000 0.00 0.00 35.74 2.24
198 199 6.315393 CGTGTAACAGGATAGGCAATTAGTTT 59.685 38.462 0.00 0.00 35.74 2.66
199 200 7.493320 CGTGTAACAGGATAGGCAATTAGTTTA 59.507 37.037 0.00 0.00 35.74 2.01
200 201 8.610035 GTGTAACAGGATAGGCAATTAGTTTAC 58.390 37.037 0.00 0.00 36.32 2.01
201 202 7.771826 TGTAACAGGATAGGCAATTAGTTTACC 59.228 37.037 0.00 0.00 0.00 2.85
202 203 6.576778 ACAGGATAGGCAATTAGTTTACCT 57.423 37.500 0.00 0.00 34.42 3.08
203 204 6.357367 ACAGGATAGGCAATTAGTTTACCTG 58.643 40.000 0.00 0.00 44.25 4.00
204 205 6.069615 ACAGGATAGGCAATTAGTTTACCTGT 60.070 38.462 0.00 0.00 45.88 4.00
205 206 6.483640 CAGGATAGGCAATTAGTTTACCTGTC 59.516 42.308 0.00 0.00 37.77 3.51
206 207 6.387220 AGGATAGGCAATTAGTTTACCTGTCT 59.613 38.462 11.02 0.00 38.35 3.41
207 208 7.567622 AGGATAGGCAATTAGTTTACCTGTCTA 59.432 37.037 11.02 0.00 38.35 2.59
208 209 8.376270 GGATAGGCAATTAGTTTACCTGTCTAT 58.624 37.037 11.02 0.00 37.57 1.98
209 210 9.780186 GATAGGCAATTAGTTTACCTGTCTATT 57.220 33.333 0.00 0.00 35.59 1.73
211 212 8.879427 AGGCAATTAGTTTACCTGTCTATTTT 57.121 30.769 0.00 0.00 0.00 1.82
212 213 8.739972 AGGCAATTAGTTTACCTGTCTATTTTG 58.260 33.333 0.00 0.00 0.00 2.44
213 214 7.973944 GGCAATTAGTTTACCTGTCTATTTTGG 59.026 37.037 0.00 0.00 0.00 3.28
214 215 8.736244 GCAATTAGTTTACCTGTCTATTTTGGA 58.264 33.333 0.00 0.00 0.00 3.53
216 217 7.916914 TTAGTTTACCTGTCTATTTTGGAGC 57.083 36.000 0.00 0.00 0.00 4.70
217 218 5.254115 AGTTTACCTGTCTATTTTGGAGCC 58.746 41.667 0.00 0.00 0.00 4.70
218 219 4.919774 TTACCTGTCTATTTTGGAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
219 220 3.806949 ACCTGTCTATTTTGGAGCCAA 57.193 42.857 0.00 0.00 0.00 4.52
220 221 4.112634 ACCTGTCTATTTTGGAGCCAAA 57.887 40.909 10.49 10.49 43.23 3.28
221 222 3.826729 ACCTGTCTATTTTGGAGCCAAAC 59.173 43.478 13.90 4.37 44.39 2.93
222 223 3.119849 CCTGTCTATTTTGGAGCCAAACG 60.120 47.826 13.90 6.51 44.39 3.60
223 224 2.817258 TGTCTATTTTGGAGCCAAACGG 59.183 45.455 13.90 7.67 44.39 4.44
232 233 3.354678 GCCAAACGGCTGTGATGT 58.645 55.556 0.00 0.00 46.85 3.06
233 234 2.550487 GCCAAACGGCTGTGATGTA 58.450 52.632 0.00 0.00 46.85 2.29
234 235 1.094785 GCCAAACGGCTGTGATGTAT 58.905 50.000 0.00 0.00 46.85 2.29
235 236 2.285083 GCCAAACGGCTGTGATGTATA 58.715 47.619 0.00 0.00 46.85 1.47
236 237 2.680841 GCCAAACGGCTGTGATGTATAA 59.319 45.455 0.00 0.00 46.85 0.98
237 238 3.242739 GCCAAACGGCTGTGATGTATAAG 60.243 47.826 0.00 0.00 46.85 1.73
238 239 3.938963 CCAAACGGCTGTGATGTATAAGT 59.061 43.478 0.00 0.00 0.00 2.24
239 240 4.201812 CCAAACGGCTGTGATGTATAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
240 241 2.550978 ACGGCTGTGATGTATAAGTGC 58.449 47.619 0.00 0.00 0.00 4.40
241 242 2.168521 ACGGCTGTGATGTATAAGTGCT 59.831 45.455 0.00 0.00 0.00 4.40
242 243 3.198068 CGGCTGTGATGTATAAGTGCTT 58.802 45.455 0.00 0.00 0.00 3.91
243 244 3.623060 CGGCTGTGATGTATAAGTGCTTT 59.377 43.478 0.00 0.00 0.00 3.51
244 245 4.494690 CGGCTGTGATGTATAAGTGCTTTG 60.495 45.833 0.00 0.00 0.00 2.77
245 246 4.201950 GGCTGTGATGTATAAGTGCTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
246 247 4.731773 GCTGTGATGTATAAGTGCTTTGGC 60.732 45.833 0.00 0.00 39.26 4.52
247 248 4.588899 TGTGATGTATAAGTGCTTTGGCT 58.411 39.130 0.00 0.00 39.59 4.75
248 249 5.739959 TGTGATGTATAAGTGCTTTGGCTA 58.260 37.500 0.00 0.00 39.59 3.93
249 250 5.817296 TGTGATGTATAAGTGCTTTGGCTAG 59.183 40.000 0.00 0.00 39.59 3.42
250 251 4.816385 TGATGTATAAGTGCTTTGGCTAGC 59.184 41.667 6.04 6.04 41.59 3.42
251 252 4.487714 TGTATAAGTGCTTTGGCTAGCT 57.512 40.909 15.72 0.00 41.76 3.32
252 253 4.843728 TGTATAAGTGCTTTGGCTAGCTT 58.156 39.130 15.72 0.47 41.76 3.74
253 254 4.635765 TGTATAAGTGCTTTGGCTAGCTTG 59.364 41.667 15.72 3.73 41.76 4.01
254 255 1.986882 AAGTGCTTTGGCTAGCTTGT 58.013 45.000 15.72 0.00 41.76 3.16
255 256 1.242076 AGTGCTTTGGCTAGCTTGTG 58.758 50.000 15.72 4.44 41.76 3.33
256 257 0.954452 GTGCTTTGGCTAGCTTGTGT 59.046 50.000 15.72 0.00 41.76 3.72
257 258 2.151202 GTGCTTTGGCTAGCTTGTGTA 58.849 47.619 15.72 0.04 41.76 2.90
258 259 2.749621 GTGCTTTGGCTAGCTTGTGTAT 59.250 45.455 15.72 0.00 41.76 2.29
259 260 3.009723 TGCTTTGGCTAGCTTGTGTATC 58.990 45.455 15.72 0.00 41.76 2.24
260 261 3.274288 GCTTTGGCTAGCTTGTGTATCT 58.726 45.455 15.72 0.00 38.15 1.98
261 262 4.081142 TGCTTTGGCTAGCTTGTGTATCTA 60.081 41.667 15.72 0.00 41.76 1.98
262 263 4.509600 GCTTTGGCTAGCTTGTGTATCTAG 59.490 45.833 15.72 0.00 38.15 2.43
266 267 4.329462 GCTAGCTTGTGTATCTAGCCTT 57.671 45.455 7.70 0.00 45.70 4.35
267 268 4.303282 GCTAGCTTGTGTATCTAGCCTTC 58.697 47.826 7.70 0.00 45.70 3.46
268 269 3.444703 AGCTTGTGTATCTAGCCTTCG 57.555 47.619 0.00 0.00 43.81 3.79
269 270 2.101582 AGCTTGTGTATCTAGCCTTCGG 59.898 50.000 0.00 0.00 43.81 4.30
270 271 2.803492 GCTTGTGTATCTAGCCTTCGGG 60.803 54.545 0.00 0.00 38.58 5.14
280 281 4.473643 CCTTCGGGCTTTGTGTGA 57.526 55.556 0.00 0.00 0.00 3.58
281 282 2.247790 CCTTCGGGCTTTGTGTGAG 58.752 57.895 0.00 0.00 0.00 3.51
282 283 1.576421 CTTCGGGCTTTGTGTGAGC 59.424 57.895 0.00 0.00 39.41 4.26
290 291 3.443099 GCTTTGTGTGAGCCTTTTCTT 57.557 42.857 0.00 0.00 34.06 2.52
291 292 4.568152 GCTTTGTGTGAGCCTTTTCTTA 57.432 40.909 0.00 0.00 34.06 2.10
292 293 4.290969 GCTTTGTGTGAGCCTTTTCTTAC 58.709 43.478 0.00 0.00 34.06 2.34
293 294 4.036852 GCTTTGTGTGAGCCTTTTCTTACT 59.963 41.667 0.00 0.00 34.06 2.24
294 295 5.450550 GCTTTGTGTGAGCCTTTTCTTACTT 60.451 40.000 0.00 0.00 34.06 2.24
295 296 6.524101 TTTGTGTGAGCCTTTTCTTACTTT 57.476 33.333 0.00 0.00 0.00 2.66
296 297 6.524101 TTGTGTGAGCCTTTTCTTACTTTT 57.476 33.333 0.00 0.00 0.00 2.27
297 298 6.131544 TGTGTGAGCCTTTTCTTACTTTTC 57.868 37.500 0.00 0.00 0.00 2.29
298 299 5.885912 TGTGTGAGCCTTTTCTTACTTTTCT 59.114 36.000 0.00 0.00 0.00 2.52
299 300 6.377146 TGTGTGAGCCTTTTCTTACTTTTCTT 59.623 34.615 0.00 0.00 0.00 2.52
300 301 6.693113 GTGTGAGCCTTTTCTTACTTTTCTTG 59.307 38.462 0.00 0.00 0.00 3.02
301 302 6.377146 TGTGAGCCTTTTCTTACTTTTCTTGT 59.623 34.615 0.00 0.00 0.00 3.16
302 303 7.093945 TGTGAGCCTTTTCTTACTTTTCTTGTT 60.094 33.333 0.00 0.00 0.00 2.83
303 304 7.220875 GTGAGCCTTTTCTTACTTTTCTTGTTG 59.779 37.037 0.00 0.00 0.00 3.33
304 305 7.122055 TGAGCCTTTTCTTACTTTTCTTGTTGA 59.878 33.333 0.00 0.00 0.00 3.18
305 306 7.258441 AGCCTTTTCTTACTTTTCTTGTTGAC 58.742 34.615 0.00 0.00 0.00 3.18
306 307 7.033185 GCCTTTTCTTACTTTTCTTGTTGACA 58.967 34.615 0.00 0.00 0.00 3.58
307 308 7.544217 GCCTTTTCTTACTTTTCTTGTTGACAA 59.456 33.333 0.00 0.00 0.00 3.18
308 309 8.860128 CCTTTTCTTACTTTTCTTGTTGACAAC 58.140 33.333 11.54 11.54 0.00 3.32
309 310 8.751302 TTTTCTTACTTTTCTTGTTGACAACC 57.249 30.769 15.59 0.00 0.00 3.77
310 311 7.696992 TTCTTACTTTTCTTGTTGACAACCT 57.303 32.000 15.59 0.00 0.00 3.50
311 312 7.696992 TCTTACTTTTCTTGTTGACAACCTT 57.303 32.000 15.59 0.00 0.00 3.50
312 313 7.535139 TCTTACTTTTCTTGTTGACAACCTTG 58.465 34.615 15.59 6.01 0.00 3.61
313 314 5.975693 ACTTTTCTTGTTGACAACCTTGA 57.024 34.783 15.59 8.12 0.00 3.02
314 315 5.954335 ACTTTTCTTGTTGACAACCTTGAG 58.046 37.500 15.59 8.41 0.00 3.02
315 316 5.710099 ACTTTTCTTGTTGACAACCTTGAGA 59.290 36.000 15.59 10.37 0.00 3.27
316 317 5.560966 TTTCTTGTTGACAACCTTGAGAC 57.439 39.130 15.59 0.00 0.00 3.36
317 318 4.487714 TCTTGTTGACAACCTTGAGACT 57.512 40.909 15.59 0.00 0.00 3.24
318 319 4.843728 TCTTGTTGACAACCTTGAGACTT 58.156 39.130 15.59 0.00 0.00 3.01
319 320 4.635765 TCTTGTTGACAACCTTGAGACTTG 59.364 41.667 15.59 0.00 0.00 3.16
320 321 3.278574 TGTTGACAACCTTGAGACTTGG 58.721 45.455 15.59 0.00 0.00 3.61
321 322 3.054728 TGTTGACAACCTTGAGACTTGGA 60.055 43.478 15.59 0.00 0.00 3.53
322 323 3.475566 TGACAACCTTGAGACTTGGAG 57.524 47.619 0.00 0.00 0.00 3.86
323 324 3.038280 TGACAACCTTGAGACTTGGAGA 58.962 45.455 0.00 0.00 0.00 3.71
324 325 3.181465 TGACAACCTTGAGACTTGGAGAC 60.181 47.826 0.00 0.00 0.00 3.36
325 326 3.041946 ACAACCTTGAGACTTGGAGACT 58.958 45.455 0.00 0.00 0.00 3.24
326 327 3.456277 ACAACCTTGAGACTTGGAGACTT 59.544 43.478 0.00 0.00 0.00 3.01
327 328 4.080299 ACAACCTTGAGACTTGGAGACTTT 60.080 41.667 0.00 0.00 0.00 2.66
328 329 4.078639 ACCTTGAGACTTGGAGACTTTG 57.921 45.455 0.00 0.00 0.00 2.77
329 330 3.456277 ACCTTGAGACTTGGAGACTTTGT 59.544 43.478 0.00 0.00 0.00 2.83
330 331 3.812053 CCTTGAGACTTGGAGACTTTGTG 59.188 47.826 0.00 0.00 0.00 3.33
331 332 3.475566 TGAGACTTGGAGACTTTGTGG 57.524 47.619 0.00 0.00 0.00 4.17
332 333 3.038280 TGAGACTTGGAGACTTTGTGGA 58.962 45.455 0.00 0.00 0.00 4.02
333 334 3.181465 TGAGACTTGGAGACTTTGTGGAC 60.181 47.826 0.00 0.00 0.00 4.02
334 335 3.041946 AGACTTGGAGACTTTGTGGACT 58.958 45.455 0.00 0.00 0.00 3.85
335 336 4.223953 AGACTTGGAGACTTTGTGGACTA 58.776 43.478 0.00 0.00 0.00 2.59
336 337 4.841246 AGACTTGGAGACTTTGTGGACTAT 59.159 41.667 0.00 0.00 0.00 2.12
337 338 5.308237 AGACTTGGAGACTTTGTGGACTATT 59.692 40.000 0.00 0.00 0.00 1.73
338 339 5.941788 ACTTGGAGACTTTGTGGACTATTT 58.058 37.500 0.00 0.00 0.00 1.40
339 340 6.365520 ACTTGGAGACTTTGTGGACTATTTT 58.634 36.000 0.00 0.00 0.00 1.82
340 341 7.514721 ACTTGGAGACTTTGTGGACTATTTTA 58.485 34.615 0.00 0.00 0.00 1.52
341 342 8.164070 ACTTGGAGACTTTGTGGACTATTTTAT 58.836 33.333 0.00 0.00 0.00 1.40
342 343 7.921786 TGGAGACTTTGTGGACTATTTTATG 57.078 36.000 0.00 0.00 0.00 1.90
343 344 6.374333 TGGAGACTTTGTGGACTATTTTATGC 59.626 38.462 0.00 0.00 0.00 3.14
344 345 6.599638 GGAGACTTTGTGGACTATTTTATGCT 59.400 38.462 0.00 0.00 0.00 3.79
345 346 7.121315 GGAGACTTTGTGGACTATTTTATGCTT 59.879 37.037 0.00 0.00 0.00 3.91
346 347 9.162764 GAGACTTTGTGGACTATTTTATGCTTA 57.837 33.333 0.00 0.00 0.00 3.09
347 348 9.515226 AGACTTTGTGGACTATTTTATGCTTAA 57.485 29.630 0.00 0.00 0.00 1.85
356 357 9.626045 GGACTATTTTATGCTTAATAACATGGC 57.374 33.333 0.00 0.00 30.21 4.40
357 358 9.626045 GACTATTTTATGCTTAATAACATGGCC 57.374 33.333 0.00 0.00 30.21 5.36
358 359 8.296713 ACTATTTTATGCTTAATAACATGGCCG 58.703 33.333 0.00 0.00 30.21 6.13
359 360 6.458232 TTTTATGCTTAATAACATGGCCGT 57.542 33.333 0.00 0.00 30.21 5.68
360 361 7.569639 TTTTATGCTTAATAACATGGCCGTA 57.430 32.000 0.00 0.00 30.21 4.02
361 362 7.753309 TTTATGCTTAATAACATGGCCGTAT 57.247 32.000 0.00 0.00 30.21 3.06
362 363 5.627499 ATGCTTAATAACATGGCCGTATG 57.373 39.130 0.00 0.00 0.00 2.39
363 364 3.252215 TGCTTAATAACATGGCCGTATGC 59.748 43.478 0.00 0.00 40.16 3.14
364 365 3.252215 GCTTAATAACATGGCCGTATGCA 59.748 43.478 0.00 0.00 43.89 3.96
365 366 4.082787 GCTTAATAACATGGCCGTATGCAT 60.083 41.667 3.79 3.79 43.89 3.96
366 367 5.621197 TTAATAACATGGCCGTATGCATC 57.379 39.130 0.19 0.00 43.89 3.91
367 368 2.629336 TAACATGGCCGTATGCATCA 57.371 45.000 0.19 0.00 43.89 3.07
368 369 1.985473 AACATGGCCGTATGCATCAT 58.015 45.000 0.19 0.00 43.89 2.45
369 370 1.241165 ACATGGCCGTATGCATCATG 58.759 50.000 18.72 18.72 42.18 3.07
370 371 0.109458 CATGGCCGTATGCATCATGC 60.109 55.000 0.19 1.35 45.29 4.06
371 372 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.000 11.84 0.00 45.31 3.79
372 373 1.167781 TGGCCGTATGCATCATGCTG 61.168 55.000 11.84 0.00 45.31 4.41
373 374 0.886043 GGCCGTATGCATCATGCTGA 60.886 55.000 11.84 0.00 45.31 4.26
374 375 1.162698 GCCGTATGCATCATGCTGAT 58.837 50.000 11.84 0.00 45.31 2.90
385 386 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
387 388 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
389 390 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
390 391 3.764160 GATGCAGAGGCCGGGGAAG 62.764 68.421 2.18 0.00 40.13 3.46
438 439 3.813596 GGCGTCATGGCACCTAAG 58.186 61.111 0.00 0.00 44.08 2.18
439 440 2.472909 GGCGTCATGGCACCTAAGC 61.473 63.158 0.00 0.00 44.08 3.09
440 441 2.813179 GCGTCATGGCACCTAAGCG 61.813 63.158 0.00 0.00 34.64 4.68
441 442 2.173669 CGTCATGGCACCTAAGCGG 61.174 63.158 0.00 0.00 39.35 5.52
479 480 3.155167 CTCGCCCTCCTACCACCC 61.155 72.222 0.00 0.00 0.00 4.61
483 484 2.284405 CCCTCCTACCACCCACGT 60.284 66.667 0.00 0.00 0.00 4.49
495 496 2.201022 CCCACGTCTATCCCCTCCG 61.201 68.421 0.00 0.00 0.00 4.63
521 522 4.003648 CCTAGGTCATGACACAACCTTTC 58.996 47.826 26.47 6.52 40.53 2.62
590 591 4.487948 CATGGAAGCATTTTGTGTCGAAT 58.512 39.130 0.00 0.00 0.00 3.34
594 595 4.142600 GGAAGCATTTTGTGTCGAATAGCT 60.143 41.667 0.00 0.00 0.00 3.32
638 639 9.077885 ACCATCTCAACATTACAAAAGTAACAT 57.922 29.630 0.00 0.00 0.00 2.71
642 643 9.944663 TCTCAACATTACAAAAGTAACATTGTC 57.055 29.630 0.00 0.00 40.14 3.18
764 766 8.757164 TGTGTAGTAATCAGTGAACTGTAATG 57.243 34.615 10.14 0.00 44.12 1.90
765 767 7.330946 TGTGTAGTAATCAGTGAACTGTAATGC 59.669 37.037 10.14 1.14 44.12 3.56
787 789 7.892778 TGCGTGATGAACTATAAGTGTTAAA 57.107 32.000 0.00 0.00 0.00 1.52
789 791 8.387354 TGCGTGATGAACTATAAGTGTTAAATG 58.613 33.333 0.00 0.00 0.00 2.32
874 876 8.404000 GTTCTTTATGACTTCTATACTCACCGA 58.596 37.037 0.00 0.00 0.00 4.69
876 878 8.622157 TCTTTATGACTTCTATACTCACCGAAG 58.378 37.037 0.00 0.00 38.95 3.79
944 952 5.797051 GTCTAGACCTGTAGACGAGGATAT 58.203 45.833 12.13 0.00 39.61 1.63
961 969 3.366374 GGATATAAAGGAATTGCTGGCGC 60.366 47.826 0.00 0.00 0.00 6.53
975 983 0.597568 TGGCGCAAGTCTTCATTTGG 59.402 50.000 10.83 0.00 46.88 3.28
1021 1029 4.749323 CTGGAAATCAGCAGCCCA 57.251 55.556 0.00 0.00 36.60 5.36
1051 1059 2.227149 GTGTTGAATGATGCAGCAGTCA 59.773 45.455 28.97 28.97 40.62 3.41
1078 1086 0.945265 CAAACCCTTGCGCACATTGG 60.945 55.000 11.12 11.06 0.00 3.16
1219 1227 0.819259 TGTTCTGCCAACCTCTGCAC 60.819 55.000 0.00 0.00 33.17 4.57
1220 1228 0.536006 GTTCTGCCAACCTCTGCACT 60.536 55.000 0.00 0.00 33.17 4.40
1280 1288 8.162878 CCATATATGGTTCATATGAATGGAGC 57.837 38.462 21.85 9.14 41.15 4.70
1282 1290 8.837389 CATATATGGTTCATATGAATGGAGCTG 58.163 37.037 20.65 9.94 39.47 4.24
1283 1291 3.216800 TGGTTCATATGAATGGAGCTGC 58.783 45.455 20.65 0.00 39.47 5.25
1284 1292 3.117776 TGGTTCATATGAATGGAGCTGCT 60.118 43.478 20.65 0.00 39.47 4.24
1287 1295 5.709164 GGTTCATATGAATGGAGCTGCTAAT 59.291 40.000 20.65 0.00 36.36 1.73
1288 1296 6.349115 GGTTCATATGAATGGAGCTGCTAATG 60.349 42.308 20.65 1.79 36.36 1.90
1289 1297 4.698780 TCATATGAATGGAGCTGCTAATGC 59.301 41.667 6.82 0.00 35.22 3.56
1290 1298 2.723322 TGAATGGAGCTGCTAATGCT 57.277 45.000 6.82 0.00 44.24 3.79
1291 1299 3.843893 TGAATGGAGCTGCTAATGCTA 57.156 42.857 6.82 0.00 41.30 3.49
1292 1300 4.155063 TGAATGGAGCTGCTAATGCTAA 57.845 40.909 6.82 0.00 41.30 3.09
1293 1301 4.722220 TGAATGGAGCTGCTAATGCTAAT 58.278 39.130 6.82 0.00 41.30 1.73
1296 1304 2.173356 TGGAGCTGCTAATGCTAATGGT 59.827 45.455 6.82 0.00 41.30 3.55
1297 1305 2.810852 GGAGCTGCTAATGCTAATGGTC 59.189 50.000 0.15 0.00 41.30 4.02
1299 1307 2.441001 AGCTGCTAATGCTAATGGTCCT 59.559 45.455 0.00 0.00 39.21 3.85
1300 1308 2.551459 GCTGCTAATGCTAATGGTCCTG 59.449 50.000 0.00 0.00 40.48 3.86
1301 1309 2.551459 CTGCTAATGCTAATGGTCCTGC 59.449 50.000 0.00 0.00 40.48 4.85
1305 1313 3.589951 AATGCTAATGGTCCTGCAGAT 57.410 42.857 17.39 0.00 38.87 2.90
1306 1314 2.627515 TGCTAATGGTCCTGCAGATC 57.372 50.000 17.39 7.44 0.00 2.75
1307 1315 1.141657 TGCTAATGGTCCTGCAGATCC 59.858 52.381 17.39 16.91 0.00 3.36
1308 1316 1.544314 GCTAATGGTCCTGCAGATCCC 60.544 57.143 17.39 12.12 0.00 3.85
1310 1318 1.002069 AATGGTCCTGCAGATCCCAA 58.998 50.000 17.39 2.61 0.00 4.12
1311 1319 0.257039 ATGGTCCTGCAGATCCCAAC 59.743 55.000 17.39 3.21 0.00 3.77
1312 1320 1.077429 GGTCCTGCAGATCCCAACC 60.077 63.158 17.39 8.74 0.00 3.77
1313 1321 1.077429 GTCCTGCAGATCCCAACCC 60.077 63.158 17.39 0.00 0.00 4.11
1314 1322 2.124570 CCTGCAGATCCCAACCCG 60.125 66.667 17.39 0.00 0.00 5.28
1315 1323 2.124570 CTGCAGATCCCAACCCGG 60.125 66.667 8.42 0.00 0.00 5.73
1317 1325 2.438434 GCAGATCCCAACCCGGTG 60.438 66.667 0.00 0.00 0.00 4.94
1318 1326 2.438434 CAGATCCCAACCCGGTGC 60.438 66.667 0.00 0.00 0.00 5.01
1319 1327 2.933287 AGATCCCAACCCGGTGCA 60.933 61.111 0.00 0.00 0.00 4.57
1320 1328 2.034999 GATCCCAACCCGGTGCAA 59.965 61.111 0.00 0.00 0.00 4.08
1321 1329 2.282887 ATCCCAACCCGGTGCAAC 60.283 61.111 0.00 0.00 0.00 4.17
1365 2568 3.744660 AGCTGCTAATGCTAATGGTACC 58.255 45.455 4.43 4.43 39.21 3.34
1370 2573 4.638421 TGCTAATGCTAATGGTACCACAAC 59.362 41.667 19.09 7.92 40.48 3.32
1659 2937 6.357367 AGTAGATGGCGAACCTATTTTTCAT 58.643 36.000 0.00 0.00 36.63 2.57
1692 2970 4.384247 GCATCTAGCGTACATGAATCTGTC 59.616 45.833 0.00 0.00 0.00 3.51
1786 3067 0.179034 GAGTGAGCCCCTTATGCAGG 60.179 60.000 0.00 0.00 43.49 4.85
1791 3072 3.060614 GCCCCTTATGCAGGCTCCA 62.061 63.158 6.66 0.00 42.29 3.86
1821 3102 5.491078 AGTCACCTTATTGGAGGATGGTAAA 59.509 40.000 0.00 0.00 39.25 2.01
1893 3183 7.120873 CCTTCAAGTCATTCTGAAGATGTTGAT 59.879 37.037 12.26 0.00 39.88 2.57
1941 3231 2.365293 GCCCAGGAAAATTGACACAAGT 59.635 45.455 0.00 0.00 0.00 3.16
1977 3267 5.682659 CCATCTTTGTCTTCAGATGATCCT 58.317 41.667 10.16 0.00 40.19 3.24
2002 3292 6.294473 AGGGAATCTGCAGATAATGTACTTG 58.706 40.000 28.92 0.00 33.73 3.16
2046 3336 4.728409 CTGGTGCAGCTGGATGAA 57.272 55.556 17.12 1.45 0.00 2.57
2156 3446 1.079750 GAGAGGTTCCAGGTGTCGC 60.080 63.158 0.00 0.00 0.00 5.19
2241 3531 3.973305 TGGCAGGGATAGATTACATGTCA 59.027 43.478 0.00 0.00 0.00 3.58
2321 3614 7.231519 TGTGTATGAGAATACCGAAGATGATCT 59.768 37.037 0.00 0.00 0.00 2.75
2412 3705 2.037251 TGCACTGGAGAGGAGTTTGTAC 59.963 50.000 0.00 0.00 0.00 2.90
2515 3808 2.544721 ACAAGATCAGAGAAGCCTGGA 58.455 47.619 0.00 0.00 34.99 3.86
2541 3834 4.814967 AGAAAGGGAAATCTGGGTTCAAA 58.185 39.130 0.00 0.00 0.00 2.69
2642 3935 5.545723 GGGAAAATCCATCCTCTAGAGATCA 59.454 44.000 21.76 4.95 38.64 2.92
2780 4073 4.305539 TGAATTCCCTGAGCTCAATGAA 57.694 40.909 22.68 22.68 0.00 2.57
2824 4117 0.464452 AAGCGTATGCCTACCTGGTC 59.536 55.000 0.63 0.00 44.31 4.02
2910 4204 3.792401 TGTTAGTCGGATGCCTATGTTG 58.208 45.455 0.00 0.00 0.00 3.33
2942 4236 4.604843 ATGATTCATGCACTTGTGTACG 57.395 40.909 0.00 0.00 0.00 3.67
2969 4263 1.801309 CGGAACCGGGTTGTGCAAAT 61.801 55.000 18.88 0.00 35.56 2.32
2970 4264 0.391228 GGAACCGGGTTGTGCAAATT 59.609 50.000 18.88 0.00 0.00 1.82
3052 4346 1.214062 GATCCTATCCGAGCAGGCG 59.786 63.158 0.00 0.00 40.77 5.52
3082 4376 6.839124 TCTGTGAATATGCAGGTGAAATTT 57.161 33.333 0.00 0.00 33.81 1.82
3095 4389 6.258507 GCAGGTGAAATTTTTGACAAGAATGT 59.741 34.615 4.82 0.00 44.25 2.71
3108 4402 5.117355 ACAAGAATGTTGTTGATGCAGAG 57.883 39.130 9.29 0.00 35.91 3.35
3137 4431 1.918957 CATCTTTGAGACCCCTCCCTT 59.081 52.381 0.00 0.00 38.66 3.95
3159 4453 3.007506 TGGAGCAGAACGTAAGATGGAAA 59.992 43.478 0.00 0.00 43.62 3.13
3376 4670 2.421424 GCACTTAAGCACATTCCTCCAG 59.579 50.000 1.29 0.00 0.00 3.86
3763 5096 7.228706 ACTTTAGAAACATGATTCGAGTTTGGT 59.771 33.333 9.75 2.68 35.77 3.67
4018 5352 3.290710 GCCATGCCTAAAAATCTGAGGA 58.709 45.455 0.00 0.00 31.45 3.71
4367 5701 7.991460 TCTGATGAGCTTATCTTTGATGAACAT 59.009 33.333 18.31 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.664798 TGGATATTTGTTGATCTGTTAAAGACG 58.335 33.333 0.00 0.00 37.88 4.18
7 8 9.426837 CAAAACATGGATATTTGTTGATCTGTT 57.573 29.630 0.00 0.00 36.26 3.16
8 9 7.546667 GCAAAACATGGATATTTGTTGATCTGT 59.453 33.333 13.43 0.00 36.26 3.41
9 10 7.546316 TGCAAAACATGGATATTTGTTGATCTG 59.454 33.333 13.43 0.00 36.26 2.90
10 11 7.613585 TGCAAAACATGGATATTTGTTGATCT 58.386 30.769 13.43 0.00 36.26 2.75
11 12 7.010738 CCTGCAAAACATGGATATTTGTTGATC 59.989 37.037 13.43 0.00 36.26 2.92
12 13 6.819649 CCTGCAAAACATGGATATTTGTTGAT 59.180 34.615 13.43 0.00 36.26 2.57
13 14 6.164876 CCTGCAAAACATGGATATTTGTTGA 58.835 36.000 13.43 2.95 36.26 3.18
14 15 5.933463 ACCTGCAAAACATGGATATTTGTTG 59.067 36.000 13.43 8.69 36.26 3.33
15 16 6.112927 ACCTGCAAAACATGGATATTTGTT 57.887 33.333 13.43 0.00 37.66 2.83
16 17 5.743636 ACCTGCAAAACATGGATATTTGT 57.256 34.783 13.43 0.00 36.63 2.83
17 18 8.199449 AGATAACCTGCAAAACATGGATATTTG 58.801 33.333 0.00 4.59 37.17 2.32
18 19 8.310122 AGATAACCTGCAAAACATGGATATTT 57.690 30.769 0.00 0.00 0.00 1.40
19 20 7.902920 AGATAACCTGCAAAACATGGATATT 57.097 32.000 0.00 0.00 0.00 1.28
20 21 7.014615 GGAAGATAACCTGCAAAACATGGATAT 59.985 37.037 0.00 0.00 0.00 1.63
21 22 6.321181 GGAAGATAACCTGCAAAACATGGATA 59.679 38.462 0.00 0.00 0.00 2.59
22 23 5.127682 GGAAGATAACCTGCAAAACATGGAT 59.872 40.000 0.00 0.00 0.00 3.41
23 24 4.462483 GGAAGATAACCTGCAAAACATGGA 59.538 41.667 0.00 0.00 0.00 3.41
24 25 4.675146 CGGAAGATAACCTGCAAAACATGG 60.675 45.833 0.00 0.00 0.00 3.66
25 26 4.155826 TCGGAAGATAACCTGCAAAACATG 59.844 41.667 0.00 0.00 33.31 3.21
26 27 4.331968 TCGGAAGATAACCTGCAAAACAT 58.668 39.130 0.00 0.00 33.31 2.71
27 28 3.745799 TCGGAAGATAACCTGCAAAACA 58.254 40.909 0.00 0.00 33.31 2.83
28 29 3.426292 GCTCGGAAGATAACCTGCAAAAC 60.426 47.826 0.00 0.00 40.84 2.43
29 30 2.747446 GCTCGGAAGATAACCTGCAAAA 59.253 45.455 0.00 0.00 40.84 2.44
30 31 2.290008 TGCTCGGAAGATAACCTGCAAA 60.290 45.455 0.00 0.00 40.84 3.68
31 32 1.277842 TGCTCGGAAGATAACCTGCAA 59.722 47.619 0.00 0.00 40.84 4.08
32 33 0.901827 TGCTCGGAAGATAACCTGCA 59.098 50.000 0.00 0.00 40.84 4.41
33 34 1.666189 GTTGCTCGGAAGATAACCTGC 59.334 52.381 0.00 0.00 40.84 4.85
34 35 1.927174 CGTTGCTCGGAAGATAACCTG 59.073 52.381 0.00 0.00 40.84 4.00
35 36 2.295253 CGTTGCTCGGAAGATAACCT 57.705 50.000 0.00 0.00 40.84 3.50
54 55 0.831307 ACCAGGAACGGATAAGAGCC 59.169 55.000 0.00 0.00 0.00 4.70
55 56 1.536284 CGACCAGGAACGGATAAGAGC 60.536 57.143 0.00 0.00 0.00 4.09
56 57 1.536284 GCGACCAGGAACGGATAAGAG 60.536 57.143 11.40 0.00 0.00 2.85
57 58 0.458669 GCGACCAGGAACGGATAAGA 59.541 55.000 11.40 0.00 0.00 2.10
58 59 0.460311 AGCGACCAGGAACGGATAAG 59.540 55.000 11.40 0.00 0.00 1.73
59 60 1.406539 GTAGCGACCAGGAACGGATAA 59.593 52.381 11.40 0.00 0.00 1.75
60 61 1.027357 GTAGCGACCAGGAACGGATA 58.973 55.000 11.40 0.00 0.00 2.59
61 62 0.683504 AGTAGCGACCAGGAACGGAT 60.684 55.000 11.40 0.00 0.00 4.18
62 63 1.303888 AGTAGCGACCAGGAACGGA 60.304 57.895 11.40 0.00 0.00 4.69
63 64 1.139095 GAGTAGCGACCAGGAACGG 59.861 63.158 11.40 0.00 0.00 4.44
64 65 0.456312 GTGAGTAGCGACCAGGAACG 60.456 60.000 0.00 0.00 0.00 3.95
65 66 0.889306 AGTGAGTAGCGACCAGGAAC 59.111 55.000 0.00 0.00 0.00 3.62
66 67 1.174783 GAGTGAGTAGCGACCAGGAA 58.825 55.000 0.00 0.00 0.00 3.36
67 68 0.680280 GGAGTGAGTAGCGACCAGGA 60.680 60.000 0.00 0.00 0.00 3.86
68 69 1.810532 GGAGTGAGTAGCGACCAGG 59.189 63.158 0.00 0.00 0.00 4.45
69 70 1.025113 TCGGAGTGAGTAGCGACCAG 61.025 60.000 0.00 0.00 0.00 4.00
70 71 1.002990 TCGGAGTGAGTAGCGACCA 60.003 57.895 0.00 0.00 0.00 4.02
71 72 1.428620 GTCGGAGTGAGTAGCGACC 59.571 63.158 0.00 0.00 0.00 4.79
72 73 1.060622 CGTCGGAGTGAGTAGCGAC 59.939 63.158 0.00 0.00 0.00 5.19
73 74 0.671472 TTCGTCGGAGTGAGTAGCGA 60.671 55.000 0.00 0.00 0.00 4.93
74 75 0.247735 CTTCGTCGGAGTGAGTAGCG 60.248 60.000 0.00 0.00 0.00 4.26
75 76 0.099082 CCTTCGTCGGAGTGAGTAGC 59.901 60.000 0.00 0.00 0.00 3.58
76 77 0.099082 GCCTTCGTCGGAGTGAGTAG 59.901 60.000 0.00 0.00 0.00 2.57
77 78 1.310933 GGCCTTCGTCGGAGTGAGTA 61.311 60.000 0.00 0.00 0.00 2.59
78 79 2.637383 GGCCTTCGTCGGAGTGAGT 61.637 63.158 0.00 0.00 0.00 3.41
79 80 2.182030 GGCCTTCGTCGGAGTGAG 59.818 66.667 0.00 0.00 0.00 3.51
80 81 2.599281 TGGCCTTCGTCGGAGTGA 60.599 61.111 3.32 0.00 0.00 3.41
81 82 2.125912 CTGGCCTTCGTCGGAGTG 60.126 66.667 3.32 0.00 0.00 3.51
82 83 3.382832 CCTGGCCTTCGTCGGAGT 61.383 66.667 3.32 0.00 0.00 3.85
83 84 4.148825 CCCTGGCCTTCGTCGGAG 62.149 72.222 3.32 0.00 0.00 4.63
84 85 4.689549 TCCCTGGCCTTCGTCGGA 62.690 66.667 3.32 0.00 0.00 4.55
85 86 4.148825 CTCCCTGGCCTTCGTCGG 62.149 72.222 3.32 0.00 0.00 4.79
86 87 4.821589 GCTCCCTGGCCTTCGTCG 62.822 72.222 3.32 0.00 0.00 5.12
87 88 2.470938 AAAGCTCCCTGGCCTTCGTC 62.471 60.000 3.32 0.00 0.00 4.20
88 89 2.069165 AAAAGCTCCCTGGCCTTCGT 62.069 55.000 3.32 0.00 0.00 3.85
89 90 1.303643 AAAAGCTCCCTGGCCTTCG 60.304 57.895 3.32 0.00 0.00 3.79
90 91 1.253593 CCAAAAGCTCCCTGGCCTTC 61.254 60.000 3.32 0.00 0.00 3.46
91 92 1.228988 CCAAAAGCTCCCTGGCCTT 60.229 57.895 3.32 0.00 0.00 4.35
92 93 2.023760 AACCAAAAGCTCCCTGGCCT 62.024 55.000 3.32 0.00 33.19 5.19
93 94 0.251608 TAACCAAAAGCTCCCTGGCC 60.252 55.000 0.00 0.00 33.19 5.36
94 95 0.888619 GTAACCAAAAGCTCCCTGGC 59.111 55.000 8.26 0.00 33.19 4.85
95 96 2.162681 CAGTAACCAAAAGCTCCCTGG 58.837 52.381 7.05 7.05 36.24 4.45
96 97 1.541588 GCAGTAACCAAAAGCTCCCTG 59.458 52.381 0.00 0.00 0.00 4.45
97 98 1.425448 AGCAGTAACCAAAAGCTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
98 99 1.541588 CAGCAGTAACCAAAAGCTCCC 59.458 52.381 0.00 0.00 32.35 4.30
99 100 1.068264 GCAGCAGTAACCAAAAGCTCC 60.068 52.381 0.00 0.00 32.35 4.70
100 101 1.882623 AGCAGCAGTAACCAAAAGCTC 59.117 47.619 0.00 0.00 32.35 4.09
101 102 1.986882 AGCAGCAGTAACCAAAAGCT 58.013 45.000 0.00 0.00 35.63 3.74
102 103 3.181496 GGATAGCAGCAGTAACCAAAAGC 60.181 47.826 0.00 0.00 0.00 3.51
103 104 3.063997 CGGATAGCAGCAGTAACCAAAAG 59.936 47.826 0.00 0.00 0.00 2.27
104 105 3.006940 CGGATAGCAGCAGTAACCAAAA 58.993 45.455 0.00 0.00 0.00 2.44
105 106 2.235155 TCGGATAGCAGCAGTAACCAAA 59.765 45.455 0.00 0.00 0.00 3.28
106 107 1.828595 TCGGATAGCAGCAGTAACCAA 59.171 47.619 0.00 0.00 0.00 3.67
107 108 1.480789 TCGGATAGCAGCAGTAACCA 58.519 50.000 0.00 0.00 0.00 3.67
108 109 2.408050 CATCGGATAGCAGCAGTAACC 58.592 52.381 0.00 0.00 0.00 2.85
109 110 2.408050 CCATCGGATAGCAGCAGTAAC 58.592 52.381 0.00 0.00 0.00 2.50
110 111 1.344438 CCCATCGGATAGCAGCAGTAA 59.656 52.381 0.00 0.00 0.00 2.24
111 112 0.969149 CCCATCGGATAGCAGCAGTA 59.031 55.000 0.00 0.00 0.00 2.74
112 113 0.760567 TCCCATCGGATAGCAGCAGT 60.761 55.000 0.00 0.00 31.13 4.40
113 114 0.037512 CTCCCATCGGATAGCAGCAG 60.038 60.000 0.00 0.00 37.60 4.24
114 115 0.469892 TCTCCCATCGGATAGCAGCA 60.470 55.000 0.00 0.00 37.60 4.41
115 116 0.901124 ATCTCCCATCGGATAGCAGC 59.099 55.000 0.00 0.00 37.60 5.25
116 117 1.206610 CCATCTCCCATCGGATAGCAG 59.793 57.143 0.00 0.00 37.60 4.24
117 118 1.269958 CCATCTCCCATCGGATAGCA 58.730 55.000 0.00 0.00 37.60 3.49
118 119 1.270907 ACCATCTCCCATCGGATAGC 58.729 55.000 0.00 0.00 37.60 2.97
119 120 2.428890 GCTACCATCTCCCATCGGATAG 59.571 54.545 0.00 0.00 37.60 2.08
120 121 2.043115 AGCTACCATCTCCCATCGGATA 59.957 50.000 0.00 0.00 37.60 2.59
121 122 1.203237 AGCTACCATCTCCCATCGGAT 60.203 52.381 0.00 0.00 37.60 4.18
122 123 0.188587 AGCTACCATCTCCCATCGGA 59.811 55.000 0.00 0.00 36.45 4.55
123 124 0.605589 GAGCTACCATCTCCCATCGG 59.394 60.000 0.00 0.00 0.00 4.18
124 125 0.242286 CGAGCTACCATCTCCCATCG 59.758 60.000 0.00 0.00 0.00 3.84
125 126 0.605589 CCGAGCTACCATCTCCCATC 59.394 60.000 0.00 0.00 0.00 3.51
126 127 0.833834 CCCGAGCTACCATCTCCCAT 60.834 60.000 0.00 0.00 0.00 4.00
127 128 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
128 129 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
129 130 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
130 131 5.594725 TGAATATATCCCGAGCTACCATCTC 59.405 44.000 0.00 0.00 0.00 2.75
131 132 5.519808 TGAATATATCCCGAGCTACCATCT 58.480 41.667 0.00 0.00 0.00 2.90
132 133 5.737635 GCTGAATATATCCCGAGCTACCATC 60.738 48.000 0.00 0.00 0.00 3.51
133 134 4.100189 GCTGAATATATCCCGAGCTACCAT 59.900 45.833 0.00 0.00 0.00 3.55
134 135 3.447586 GCTGAATATATCCCGAGCTACCA 59.552 47.826 0.00 0.00 0.00 3.25
135 136 3.181474 GGCTGAATATATCCCGAGCTACC 60.181 52.174 0.00 0.00 0.00 3.18
136 137 3.489398 CGGCTGAATATATCCCGAGCTAC 60.489 52.174 7.80 0.00 41.34 3.58
137 138 2.688446 CGGCTGAATATATCCCGAGCTA 59.312 50.000 7.80 0.00 41.34 3.32
138 139 1.478510 CGGCTGAATATATCCCGAGCT 59.521 52.381 7.80 0.00 41.34 4.09
139 140 1.471676 CCGGCTGAATATATCCCGAGC 60.472 57.143 12.76 6.29 41.34 5.03
140 141 1.825474 ACCGGCTGAATATATCCCGAG 59.175 52.381 0.00 7.67 41.34 4.63
141 142 1.933021 ACCGGCTGAATATATCCCGA 58.067 50.000 0.00 0.00 41.34 5.14
142 143 2.742053 CAAACCGGCTGAATATATCCCG 59.258 50.000 0.00 6.95 38.71 5.14
143 144 3.081804 CCAAACCGGCTGAATATATCCC 58.918 50.000 0.00 0.00 0.00 3.85
144 145 4.015872 TCCAAACCGGCTGAATATATCC 57.984 45.455 0.00 0.00 33.14 2.59
145 146 4.396166 CCATCCAAACCGGCTGAATATATC 59.604 45.833 0.00 0.00 32.15 1.63
146 147 4.335416 CCATCCAAACCGGCTGAATATAT 58.665 43.478 0.00 0.00 32.15 0.86
147 148 3.750371 CCATCCAAACCGGCTGAATATA 58.250 45.455 0.00 0.00 32.15 0.86
148 149 2.586425 CCATCCAAACCGGCTGAATAT 58.414 47.619 0.00 0.00 32.15 1.28
149 150 2.021723 GCCATCCAAACCGGCTGAATA 61.022 52.381 0.00 0.00 42.78 1.75
150 151 1.322538 GCCATCCAAACCGGCTGAAT 61.323 55.000 0.00 0.00 42.78 2.57
151 152 1.976474 GCCATCCAAACCGGCTGAA 60.976 57.895 0.00 0.00 42.78 3.02
152 153 2.361104 GCCATCCAAACCGGCTGA 60.361 61.111 0.00 0.00 42.78 4.26
153 154 3.814268 CGCCATCCAAACCGGCTG 61.814 66.667 0.00 0.00 43.95 4.85
156 157 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
157 158 3.496131 CGACCGCCATCCAAACCG 61.496 66.667 0.00 0.00 0.00 4.44
158 159 2.359478 ACGACCGCCATCCAAACC 60.359 61.111 0.00 0.00 0.00 3.27
159 160 0.671163 TACACGACCGCCATCCAAAC 60.671 55.000 0.00 0.00 0.00 2.93
160 161 0.035036 TTACACGACCGCCATCCAAA 59.965 50.000 0.00 0.00 0.00 3.28
161 162 0.671163 GTTACACGACCGCCATCCAA 60.671 55.000 0.00 0.00 0.00 3.53
162 163 1.079681 GTTACACGACCGCCATCCA 60.080 57.895 0.00 0.00 0.00 3.41
163 164 1.079681 TGTTACACGACCGCCATCC 60.080 57.895 0.00 0.00 0.00 3.51
164 165 1.082117 CCTGTTACACGACCGCCATC 61.082 60.000 0.00 0.00 0.00 3.51
165 166 1.079405 CCTGTTACACGACCGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
166 167 1.537814 ATCCTGTTACACGACCGCCA 61.538 55.000 0.00 0.00 0.00 5.69
167 168 0.457035 TATCCTGTTACACGACCGCC 59.543 55.000 0.00 0.00 0.00 6.13
168 169 1.535437 CCTATCCTGTTACACGACCGC 60.535 57.143 0.00 0.00 0.00 5.68
169 170 1.535437 GCCTATCCTGTTACACGACCG 60.535 57.143 0.00 0.00 0.00 4.79
170 171 1.479323 TGCCTATCCTGTTACACGACC 59.521 52.381 0.00 0.00 0.00 4.79
171 172 2.953466 TGCCTATCCTGTTACACGAC 57.047 50.000 0.00 0.00 0.00 4.34
172 173 4.481368 AATTGCCTATCCTGTTACACGA 57.519 40.909 0.00 0.00 0.00 4.35
173 174 5.357257 ACTAATTGCCTATCCTGTTACACG 58.643 41.667 0.00 0.00 0.00 4.49
174 175 7.625828 AAACTAATTGCCTATCCTGTTACAC 57.374 36.000 0.00 0.00 0.00 2.90
175 176 7.771826 GGTAAACTAATTGCCTATCCTGTTACA 59.228 37.037 0.00 0.00 40.38 2.41
176 177 8.151141 GGTAAACTAATTGCCTATCCTGTTAC 57.849 38.462 0.00 0.00 40.38 2.50
187 188 7.973944 CCAAAATAGACAGGTAAACTAATTGCC 59.026 37.037 0.00 0.00 43.60 4.52
188 189 8.736244 TCCAAAATAGACAGGTAAACTAATTGC 58.264 33.333 0.00 0.00 0.00 3.56
190 191 8.957466 GCTCCAAAATAGACAGGTAAACTAATT 58.043 33.333 0.00 0.00 0.00 1.40
191 192 7.556635 GGCTCCAAAATAGACAGGTAAACTAAT 59.443 37.037 0.00 0.00 0.00 1.73
192 193 6.882678 GGCTCCAAAATAGACAGGTAAACTAA 59.117 38.462 0.00 0.00 0.00 2.24
193 194 6.013206 TGGCTCCAAAATAGACAGGTAAACTA 60.013 38.462 0.00 0.00 0.00 2.24
194 195 5.222048 TGGCTCCAAAATAGACAGGTAAACT 60.222 40.000 0.00 0.00 0.00 2.66
195 196 5.007682 TGGCTCCAAAATAGACAGGTAAAC 58.992 41.667 0.00 0.00 0.00 2.01
196 197 5.249780 TGGCTCCAAAATAGACAGGTAAA 57.750 39.130 0.00 0.00 0.00 2.01
197 198 4.919774 TGGCTCCAAAATAGACAGGTAA 57.080 40.909 0.00 0.00 0.00 2.85
198 199 4.919774 TTGGCTCCAAAATAGACAGGTA 57.080 40.909 0.00 0.00 32.36 3.08
199 200 3.806949 TTGGCTCCAAAATAGACAGGT 57.193 42.857 0.00 0.00 32.36 4.00
200 201 3.119849 CGTTTGGCTCCAAAATAGACAGG 60.120 47.826 14.97 0.00 45.86 4.00
201 202 3.119849 CCGTTTGGCTCCAAAATAGACAG 60.120 47.826 14.97 1.92 45.86 3.51
202 203 2.817258 CCGTTTGGCTCCAAAATAGACA 59.183 45.455 14.97 0.00 45.86 3.41
203 204 3.487563 CCGTTTGGCTCCAAAATAGAC 57.512 47.619 14.97 3.42 45.86 2.59
216 217 3.938963 ACTTATACATCACAGCCGTTTGG 59.061 43.478 0.00 0.00 38.77 3.28
217 218 4.727734 GCACTTATACATCACAGCCGTTTG 60.728 45.833 0.00 0.00 0.00 2.93
218 219 3.374058 GCACTTATACATCACAGCCGTTT 59.626 43.478 0.00 0.00 0.00 3.60
219 220 2.936498 GCACTTATACATCACAGCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
220 221 2.168521 AGCACTTATACATCACAGCCGT 59.831 45.455 0.00 0.00 0.00 5.68
221 222 2.826428 AGCACTTATACATCACAGCCG 58.174 47.619 0.00 0.00 0.00 5.52
222 223 4.201950 CCAAAGCACTTATACATCACAGCC 60.202 45.833 0.00 0.00 0.00 4.85
223 224 4.731773 GCCAAAGCACTTATACATCACAGC 60.732 45.833 0.00 0.00 39.53 4.40
224 225 4.637534 AGCCAAAGCACTTATACATCACAG 59.362 41.667 0.00 0.00 43.56 3.66
225 226 4.588899 AGCCAAAGCACTTATACATCACA 58.411 39.130 0.00 0.00 43.56 3.58
226 227 5.277538 GCTAGCCAAAGCACTTATACATCAC 60.278 44.000 2.29 0.00 43.56 3.06
227 228 4.816385 GCTAGCCAAAGCACTTATACATCA 59.184 41.667 2.29 0.00 43.56 3.07
228 229 5.059833 AGCTAGCCAAAGCACTTATACATC 58.940 41.667 12.13 0.00 45.30 3.06
229 230 5.041191 AGCTAGCCAAAGCACTTATACAT 57.959 39.130 12.13 0.00 45.30 2.29
230 231 4.487714 AGCTAGCCAAAGCACTTATACA 57.512 40.909 12.13 0.00 45.30 2.29
231 232 4.636206 ACAAGCTAGCCAAAGCACTTATAC 59.364 41.667 12.13 0.00 45.30 1.47
232 233 4.635765 CACAAGCTAGCCAAAGCACTTATA 59.364 41.667 12.13 0.00 45.30 0.98
233 234 3.441572 CACAAGCTAGCCAAAGCACTTAT 59.558 43.478 12.13 0.00 45.30 1.73
234 235 2.813754 CACAAGCTAGCCAAAGCACTTA 59.186 45.455 12.13 0.00 45.30 2.24
235 236 1.610522 CACAAGCTAGCCAAAGCACTT 59.389 47.619 12.13 0.00 45.30 3.16
236 237 1.242076 CACAAGCTAGCCAAAGCACT 58.758 50.000 12.13 0.00 45.30 4.40
237 238 0.954452 ACACAAGCTAGCCAAAGCAC 59.046 50.000 12.13 0.00 45.30 4.40
238 239 2.559698 TACACAAGCTAGCCAAAGCA 57.440 45.000 12.13 0.00 45.30 3.91
239 240 3.274288 AGATACACAAGCTAGCCAAAGC 58.726 45.455 12.13 0.00 43.11 3.51
246 247 4.541779 CGAAGGCTAGATACACAAGCTAG 58.458 47.826 0.00 0.00 36.48 3.42
247 248 3.318275 CCGAAGGCTAGATACACAAGCTA 59.682 47.826 0.00 0.00 46.14 3.32
248 249 2.101582 CCGAAGGCTAGATACACAAGCT 59.898 50.000 0.00 0.00 46.14 3.74
249 250 2.474816 CCGAAGGCTAGATACACAAGC 58.525 52.381 0.00 0.00 46.14 4.01
264 265 1.576421 GCTCACACAAAGCCCGAAG 59.424 57.895 0.00 0.00 33.53 3.79
265 266 3.744559 GCTCACACAAAGCCCGAA 58.255 55.556 0.00 0.00 33.53 4.30
270 271 3.443099 AAGAAAAGGCTCACACAAAGC 57.557 42.857 0.00 0.00 39.09 3.51
271 272 5.757850 AGTAAGAAAAGGCTCACACAAAG 57.242 39.130 0.00 0.00 0.00 2.77
272 273 6.524101 AAAGTAAGAAAAGGCTCACACAAA 57.476 33.333 0.00 0.00 0.00 2.83
273 274 6.377146 AGAAAAGTAAGAAAAGGCTCACACAA 59.623 34.615 0.00 0.00 0.00 3.33
274 275 5.885912 AGAAAAGTAAGAAAAGGCTCACACA 59.114 36.000 0.00 0.00 0.00 3.72
275 276 6.378710 AGAAAAGTAAGAAAAGGCTCACAC 57.621 37.500 0.00 0.00 0.00 3.82
276 277 6.377146 ACAAGAAAAGTAAGAAAAGGCTCACA 59.623 34.615 0.00 0.00 0.00 3.58
277 278 6.796426 ACAAGAAAAGTAAGAAAAGGCTCAC 58.204 36.000 0.00 0.00 0.00 3.51
278 279 7.122055 TCAACAAGAAAAGTAAGAAAAGGCTCA 59.878 33.333 0.00 0.00 0.00 4.26
279 280 7.432545 GTCAACAAGAAAAGTAAGAAAAGGCTC 59.567 37.037 0.00 0.00 0.00 4.70
280 281 7.093945 TGTCAACAAGAAAAGTAAGAAAAGGCT 60.094 33.333 0.00 0.00 0.00 4.58
281 282 7.033185 TGTCAACAAGAAAAGTAAGAAAAGGC 58.967 34.615 0.00 0.00 0.00 4.35
282 283 8.860128 GTTGTCAACAAGAAAAGTAAGAAAAGG 58.140 33.333 10.93 0.00 36.39 3.11
283 284 8.860128 GGTTGTCAACAAGAAAAGTAAGAAAAG 58.140 33.333 17.29 0.00 36.39 2.27
284 285 8.581578 AGGTTGTCAACAAGAAAAGTAAGAAAA 58.418 29.630 17.29 0.00 36.39 2.29
285 286 8.117813 AGGTTGTCAACAAGAAAAGTAAGAAA 57.882 30.769 17.29 0.00 36.39 2.52
286 287 7.696992 AGGTTGTCAACAAGAAAAGTAAGAA 57.303 32.000 17.29 0.00 36.39 2.52
287 288 7.392113 TCAAGGTTGTCAACAAGAAAAGTAAGA 59.608 33.333 17.29 0.00 36.39 2.10
288 289 7.535139 TCAAGGTTGTCAACAAGAAAAGTAAG 58.465 34.615 17.29 0.00 36.39 2.34
289 290 7.392113 TCTCAAGGTTGTCAACAAGAAAAGTAA 59.608 33.333 17.29 0.00 36.39 2.24
290 291 6.882140 TCTCAAGGTTGTCAACAAGAAAAGTA 59.118 34.615 17.29 0.00 36.39 2.24
291 292 5.710099 TCTCAAGGTTGTCAACAAGAAAAGT 59.290 36.000 17.29 0.00 36.39 2.66
292 293 6.030228 GTCTCAAGGTTGTCAACAAGAAAAG 58.970 40.000 17.29 6.83 36.39 2.27
293 294 5.710099 AGTCTCAAGGTTGTCAACAAGAAAA 59.290 36.000 17.29 1.38 36.39 2.29
294 295 5.253330 AGTCTCAAGGTTGTCAACAAGAAA 58.747 37.500 17.29 0.00 36.39 2.52
295 296 4.843728 AGTCTCAAGGTTGTCAACAAGAA 58.156 39.130 17.29 0.00 36.39 2.52
296 297 4.487714 AGTCTCAAGGTTGTCAACAAGA 57.512 40.909 17.29 10.62 36.39 3.02
297 298 4.201950 CCAAGTCTCAAGGTTGTCAACAAG 60.202 45.833 17.29 8.69 36.39 3.16
298 299 3.694072 CCAAGTCTCAAGGTTGTCAACAA 59.306 43.478 17.29 0.00 0.00 2.83
299 300 3.054728 TCCAAGTCTCAAGGTTGTCAACA 60.055 43.478 17.29 0.00 0.00 3.33
300 301 3.541632 TCCAAGTCTCAAGGTTGTCAAC 58.458 45.455 7.20 7.20 0.00 3.18
301 302 3.454447 TCTCCAAGTCTCAAGGTTGTCAA 59.546 43.478 0.00 0.00 0.00 3.18
302 303 3.038280 TCTCCAAGTCTCAAGGTTGTCA 58.962 45.455 0.00 0.00 0.00 3.58
303 304 3.070302 AGTCTCCAAGTCTCAAGGTTGTC 59.930 47.826 0.00 0.00 0.00 3.18
304 305 3.041946 AGTCTCCAAGTCTCAAGGTTGT 58.958 45.455 0.00 0.00 0.00 3.32
305 306 3.760580 AGTCTCCAAGTCTCAAGGTTG 57.239 47.619 0.00 0.00 0.00 3.77
306 307 4.080299 ACAAAGTCTCCAAGTCTCAAGGTT 60.080 41.667 0.00 0.00 0.00 3.50
307 308 3.456277 ACAAAGTCTCCAAGTCTCAAGGT 59.544 43.478 0.00 0.00 0.00 3.50
308 309 3.812053 CACAAAGTCTCCAAGTCTCAAGG 59.188 47.826 0.00 0.00 0.00 3.61
309 310 3.812053 CCACAAAGTCTCCAAGTCTCAAG 59.188 47.826 0.00 0.00 0.00 3.02
310 311 3.454447 TCCACAAAGTCTCCAAGTCTCAA 59.546 43.478 0.00 0.00 0.00 3.02
311 312 3.038280 TCCACAAAGTCTCCAAGTCTCA 58.962 45.455 0.00 0.00 0.00 3.27
312 313 3.070302 AGTCCACAAAGTCTCCAAGTCTC 59.930 47.826 0.00 0.00 0.00 3.36
313 314 3.041946 AGTCCACAAAGTCTCCAAGTCT 58.958 45.455 0.00 0.00 0.00 3.24
314 315 3.477210 AGTCCACAAAGTCTCCAAGTC 57.523 47.619 0.00 0.00 0.00 3.01
315 316 5.568620 AATAGTCCACAAAGTCTCCAAGT 57.431 39.130 0.00 0.00 0.00 3.16
316 317 6.884280 AAAATAGTCCACAAAGTCTCCAAG 57.116 37.500 0.00 0.00 0.00 3.61
317 318 7.094377 GCATAAAATAGTCCACAAAGTCTCCAA 60.094 37.037 0.00 0.00 0.00 3.53
318 319 6.374333 GCATAAAATAGTCCACAAAGTCTCCA 59.626 38.462 0.00 0.00 0.00 3.86
319 320 6.599638 AGCATAAAATAGTCCACAAAGTCTCC 59.400 38.462 0.00 0.00 0.00 3.71
320 321 7.617041 AGCATAAAATAGTCCACAAAGTCTC 57.383 36.000 0.00 0.00 0.00 3.36
321 322 9.515226 TTAAGCATAAAATAGTCCACAAAGTCT 57.485 29.630 0.00 0.00 0.00 3.24
330 331 9.626045 GCCATGTTATTAAGCATAAAATAGTCC 57.374 33.333 0.00 0.00 0.00 3.85
331 332 9.626045 GGCCATGTTATTAAGCATAAAATAGTC 57.374 33.333 0.00 0.00 0.00 2.59
332 333 8.296713 CGGCCATGTTATTAAGCATAAAATAGT 58.703 33.333 2.24 0.00 0.00 2.12
333 334 8.296713 ACGGCCATGTTATTAAGCATAAAATAG 58.703 33.333 2.24 0.00 0.00 1.73
334 335 8.172352 ACGGCCATGTTATTAAGCATAAAATA 57.828 30.769 2.24 0.00 0.00 1.40
335 336 7.049799 ACGGCCATGTTATTAAGCATAAAAT 57.950 32.000 2.24 0.00 0.00 1.82
336 337 6.458232 ACGGCCATGTTATTAAGCATAAAA 57.542 33.333 2.24 0.00 0.00 1.52
337 338 7.589395 CATACGGCCATGTTATTAAGCATAAA 58.411 34.615 2.24 0.00 0.00 1.40
338 339 6.348950 GCATACGGCCATGTTATTAAGCATAA 60.349 38.462 2.24 0.00 36.11 1.90
339 340 5.123186 GCATACGGCCATGTTATTAAGCATA 59.877 40.000 2.24 0.00 36.11 3.14
340 341 4.082787 GCATACGGCCATGTTATTAAGCAT 60.083 41.667 2.24 0.00 36.11 3.79
341 342 3.252215 GCATACGGCCATGTTATTAAGCA 59.748 43.478 2.24 0.00 36.11 3.91
342 343 3.252215 TGCATACGGCCATGTTATTAAGC 59.748 43.478 2.24 0.00 43.89 3.09
343 344 5.181056 TGATGCATACGGCCATGTTATTAAG 59.819 40.000 2.24 0.00 43.89 1.85
344 345 5.066593 TGATGCATACGGCCATGTTATTAA 58.933 37.500 2.24 0.00 43.89 1.40
345 346 4.646572 TGATGCATACGGCCATGTTATTA 58.353 39.130 2.24 0.00 43.89 0.98
346 347 3.485394 TGATGCATACGGCCATGTTATT 58.515 40.909 2.24 0.00 43.89 1.40
347 348 3.138884 TGATGCATACGGCCATGTTAT 57.861 42.857 2.24 0.00 43.89 1.89
348 349 2.629336 TGATGCATACGGCCATGTTA 57.371 45.000 2.24 0.00 43.89 2.41
349 350 1.610038 CATGATGCATACGGCCATGTT 59.390 47.619 14.23 0.00 43.89 2.71
350 351 1.241165 CATGATGCATACGGCCATGT 58.759 50.000 14.23 0.00 43.89 3.21
351 352 0.109458 GCATGATGCATACGGCCATG 60.109 55.000 13.36 16.92 44.26 3.66
352 353 2.260247 GCATGATGCATACGGCCAT 58.740 52.632 13.36 0.00 44.26 4.40
353 354 3.748623 GCATGATGCATACGGCCA 58.251 55.556 13.36 0.00 44.26 5.36
370 371 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
372 373 3.764160 CTTCCCCGGCCTCTGCATC 62.764 68.421 0.00 0.00 40.13 3.91
373 374 3.801997 CTTCCCCGGCCTCTGCAT 61.802 66.667 0.00 0.00 40.13 3.96
431 432 3.134127 GGCTTGGCCGCTTAGGTG 61.134 66.667 0.00 0.00 39.62 4.00
441 442 0.393132 GTAGGGAGTTCAGGCTTGGC 60.393 60.000 0.00 0.00 0.00 4.52
479 480 1.336125 GTTACGGAGGGGATAGACGTG 59.664 57.143 0.00 0.00 38.34 4.49
483 484 2.377869 CCTAGGTTACGGAGGGGATAGA 59.622 54.545 0.00 0.00 0.00 1.98
495 496 4.020485 AGGTTGTGTCATGACCTAGGTTAC 60.020 45.833 22.85 12.59 41.83 2.50
521 522 2.991250 ACTATGGCAGCAAAGTACCTG 58.009 47.619 0.00 0.00 0.00 4.00
566 567 2.228582 CGACACAAAATGCTTCCATGGA 59.771 45.455 11.44 11.44 0.00 3.41
594 595 1.201181 GGTACATGCGAAAATGGCACA 59.799 47.619 0.00 0.00 44.23 4.57
638 639 2.483877 GCCATCAATCGAACTGTGACAA 59.516 45.455 0.00 0.00 0.00 3.18
642 643 1.805943 TGTGCCATCAATCGAACTGTG 59.194 47.619 0.00 0.00 0.00 3.66
726 728 7.105588 TGATTACTACACAGAAGACATGCAAT 58.894 34.615 0.00 0.00 0.00 3.56
764 766 8.388103 ACATTTAACACTTATAGTTCATCACGC 58.612 33.333 0.00 0.00 0.00 5.34
961 969 8.526147 ACTGATATTTTCCCAAATGAAGACTTG 58.474 33.333 0.00 0.00 34.29 3.16
975 983 4.725790 AAGCTGCCAACTGATATTTTCC 57.274 40.909 0.00 0.00 0.00 3.13
1021 1029 4.338964 TGCATCATTCAACACAACTGAAGT 59.661 37.500 0.00 0.00 36.30 3.01
1051 1059 2.332654 GCAAGGGTTTGGCGTCGAT 61.333 57.895 0.00 0.00 34.79 3.59
1078 1086 2.048603 GTGCAGGGAACATGGGAGC 61.049 63.158 0.00 0.00 0.00 4.70
1135 1143 0.603975 GGGGTGACACAGAGAACTGC 60.604 60.000 8.08 0.00 46.95 4.40
1179 1187 0.251297 CACCAGGCATTCCCAGTTCA 60.251 55.000 0.00 0.00 35.39 3.18
1219 1227 3.288484 TGCAGGAGCGGACAGTAG 58.712 61.111 0.00 0.00 46.23 2.57
1264 1272 6.609533 CATTAGCAGCTCCATTCATATGAAC 58.390 40.000 20.19 7.52 36.80 3.18
1265 1273 5.182570 GCATTAGCAGCTCCATTCATATGAA 59.817 40.000 20.07 20.07 41.58 2.57
1266 1274 4.698780 GCATTAGCAGCTCCATTCATATGA 59.301 41.667 0.00 0.00 41.58 2.15
1267 1275 4.700692 AGCATTAGCAGCTCCATTCATATG 59.299 41.667 0.00 0.00 45.49 1.78
1268 1276 4.919793 AGCATTAGCAGCTCCATTCATAT 58.080 39.130 0.00 0.00 45.49 1.78
1269 1277 4.362470 AGCATTAGCAGCTCCATTCATA 57.638 40.909 0.00 0.00 45.49 2.15
1270 1278 3.225177 AGCATTAGCAGCTCCATTCAT 57.775 42.857 0.00 0.00 45.49 2.57
1271 1279 2.723322 AGCATTAGCAGCTCCATTCA 57.277 45.000 0.00 0.00 45.49 2.57
1274 1282 3.181436 ACCATTAGCATTAGCAGCTCCAT 60.181 43.478 0.00 0.00 45.49 3.41
1275 1283 2.173356 ACCATTAGCATTAGCAGCTCCA 59.827 45.455 0.00 0.00 45.49 3.86
1276 1284 2.810852 GACCATTAGCATTAGCAGCTCC 59.189 50.000 0.00 0.00 45.49 4.70
1277 1285 2.810852 GGACCATTAGCATTAGCAGCTC 59.189 50.000 0.00 0.00 45.49 4.09
1278 1286 2.441001 AGGACCATTAGCATTAGCAGCT 59.559 45.455 0.00 0.00 45.49 4.24
1280 1288 2.551459 GCAGGACCATTAGCATTAGCAG 59.449 50.000 0.00 0.00 45.49 4.24
1282 1290 2.551459 CTGCAGGACCATTAGCATTAGC 59.449 50.000 5.57 0.00 42.56 3.09
1283 1291 4.077300 TCTGCAGGACCATTAGCATTAG 57.923 45.455 15.13 0.00 36.28 1.73
1284 1292 4.505566 GGATCTGCAGGACCATTAGCATTA 60.506 45.833 15.13 0.00 36.28 1.90
1287 1295 1.141657 GGATCTGCAGGACCATTAGCA 59.858 52.381 15.13 0.00 35.43 3.49
1288 1296 1.544314 GGGATCTGCAGGACCATTAGC 60.544 57.143 23.81 4.57 0.00 3.09
1289 1297 1.770658 TGGGATCTGCAGGACCATTAG 59.229 52.381 23.81 0.00 0.00 1.73
1290 1298 1.891933 TGGGATCTGCAGGACCATTA 58.108 50.000 23.81 11.96 0.00 1.90
1291 1299 1.002069 TTGGGATCTGCAGGACCATT 58.998 50.000 23.81 2.23 0.00 3.16
1292 1300 0.257039 GTTGGGATCTGCAGGACCAT 59.743 55.000 23.81 8.56 0.00 3.55
1293 1301 1.685224 GTTGGGATCTGCAGGACCA 59.315 57.895 23.81 20.74 0.00 4.02
1296 1304 2.669133 CGGGTTGGGATCTGCAGGA 61.669 63.158 15.13 0.57 0.00 3.86
1297 1305 2.124570 CGGGTTGGGATCTGCAGG 60.125 66.667 15.13 0.00 0.00 4.85
1299 1307 2.933287 ACCGGGTTGGGATCTGCA 60.933 61.111 6.32 0.00 44.64 4.41
1300 1308 2.438434 CACCGGGTTGGGATCTGC 60.438 66.667 6.32 0.00 44.64 4.26
1301 1309 2.438434 GCACCGGGTTGGGATCTG 60.438 66.667 6.32 0.00 44.64 2.90
1305 1313 4.589675 GGTTGCACCGGGTTGGGA 62.590 66.667 6.32 0.00 44.64 4.37
1306 1314 2.773007 TATGGTTGCACCGGGTTGGG 62.773 60.000 6.32 0.00 42.58 4.12
1307 1315 0.682855 ATATGGTTGCACCGGGTTGG 60.683 55.000 6.32 0.00 42.58 3.77
1308 1316 2.045561 TATATGGTTGCACCGGGTTG 57.954 50.000 6.32 0.00 42.58 3.77
1310 1318 1.202879 CCATATATGGTTGCACCGGGT 60.203 52.381 21.85 0.00 42.58 5.28
1311 1319 1.533625 CCATATATGGTTGCACCGGG 58.466 55.000 21.85 0.00 42.58 5.73
1321 1329 7.997223 AGCTCCATTCATATGAACCATATATGG 59.003 37.037 27.16 27.16 40.62 2.74
1592 2870 2.079158 CGACAGAAACATCTGGCACAT 58.921 47.619 11.89 0.00 45.78 3.21
1659 2937 1.032794 CGCTAGATGCAGGAGGTGTA 58.967 55.000 0.00 0.00 43.06 2.90
1692 2970 0.313987 GTCGCCCCCTTTTCTTTGTG 59.686 55.000 0.00 0.00 0.00 3.33
1786 3067 0.035630 AAGGTGACTGCAGATGGAGC 60.036 55.000 23.35 10.12 42.68 4.70
1791 3072 3.118112 CCTCCAATAAGGTGACTGCAGAT 60.118 47.826 23.35 4.35 42.68 2.90
1821 3102 3.403558 GGCCGCCCTCTCTTCCTT 61.404 66.667 0.00 0.00 0.00 3.36
1893 3183 3.558006 CACGTTTTGATGTGTCACCACTA 59.442 43.478 0.00 0.00 42.34 2.74
1941 3231 2.045634 GATGGCAGGTGCAGCAGA 60.046 61.111 19.63 0.00 44.36 4.26
1977 3267 7.071196 ACAAGTACATTATCTGCAGATTCCCTA 59.929 37.037 32.94 13.21 36.05 3.53
2002 3292 2.518949 CCGCAGTGCATCAAACATAAC 58.481 47.619 16.83 0.00 0.00 1.89
2031 3321 2.758089 CGCTTCATCCAGCTGCACC 61.758 63.158 8.66 0.00 37.68 5.01
2046 3336 1.355066 GCTTCGCTACTTGCTTCGCT 61.355 55.000 0.00 0.00 40.11 4.93
2156 3446 3.040147 AGTAGAACATGTCACCAACCG 57.960 47.619 0.00 0.00 0.00 4.44
2241 3531 3.056035 CCTCCTCGTTACCAAACTTAGCT 60.056 47.826 0.00 0.00 33.15 3.32
2321 3614 5.305902 TGTCCAGTGTAAACCAGAACATCTA 59.694 40.000 0.00 0.00 0.00 1.98
2412 3705 6.240549 ACAACTCTAATGGGATTACCTCTG 57.759 41.667 0.00 0.00 41.11 3.35
2515 3808 2.929043 ACCCAGATTTCCCTTTCTCCAT 59.071 45.455 0.00 0.00 0.00 3.41
2559 3852 1.694696 GGTTGTCCAGGTTCTCTCAGT 59.305 52.381 0.00 0.00 0.00 3.41
2667 3960 1.493022 ACAGGCTTACTTTCCACACCA 59.507 47.619 0.00 0.00 0.00 4.17
2824 4117 5.337219 TGCGTACAAGAACAGTTGTTATG 57.663 39.130 0.00 3.58 41.06 1.90
2859 4153 2.288825 TGAAGCACTGTAAGGAAGGTCG 60.289 50.000 0.00 0.00 39.30 4.79
2910 4204 5.177725 TGCATGAATCATTGCACTCATAC 57.822 39.130 13.52 0.00 31.84 2.39
2964 4258 5.343307 AGTGGATTTGGATACCAATTTGC 57.657 39.130 4.03 2.23 43.55 3.68
2969 4263 6.074648 ACTTCAAAGTGGATTTGGATACCAA 58.925 36.000 0.00 0.00 46.93 3.67
2970 4264 5.640147 ACTTCAAAGTGGATTTGGATACCA 58.360 37.500 0.00 0.00 46.93 3.25
3052 4346 6.016860 TCACCTGCATATTCACAGATAAATGC 60.017 38.462 0.00 0.00 35.90 3.56
3082 4376 5.658468 TGCATCAACAACATTCTTGTCAAA 58.342 33.333 0.00 0.00 34.06 2.69
3095 4389 2.768253 ATCGTCCTCTGCATCAACAA 57.232 45.000 0.00 0.00 0.00 2.83
3108 4402 8.838081 GAGGGGTCTCAAAGATGTAATCGTCC 62.838 50.000 0.00 0.00 43.18 4.79
3137 4431 2.176045 TCCATCTTACGTTCTGCTCCA 58.824 47.619 0.00 0.00 0.00 3.86
3308 4602 6.610425 TCCCTCATCACCATGATCATATAGAG 59.390 42.308 8.15 9.64 38.42 2.43
3376 4670 7.875041 ACCATAATCATATGTAAGCTCTGTCAC 59.125 37.037 1.90 0.00 37.75 3.67
4018 5352 2.614259 AGGACCTGAATATCCAGCGAT 58.386 47.619 0.00 0.00 37.47 4.58
4367 5701 0.863144 GACAAACGTTCCGCTGCTTA 59.137 50.000 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.