Multiple sequence alignment - TraesCS3B01G416800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G416800 chr3B 100.000 3056 0 0 1 3056 654180538 654177483 0.000000e+00 5644.0
1 TraesCS3B01G416800 chr3B 88.208 653 76 1 1474 2125 654308035 654307383 0.000000e+00 778.0
2 TraesCS3B01G416800 chr3B 76.840 1209 232 30 955 2126 654083354 654082157 3.320000e-179 638.0
3 TraesCS3B01G416800 chr3B 80.757 608 112 2 1474 2077 654337102 654336496 1.280000e-128 470.0
4 TraesCS3B01G416800 chr3D 92.627 2360 136 19 434 2782 495235218 495232886 0.000000e+00 3360.0
5 TraesCS3B01G416800 chr3D 86.524 653 85 2 1474 2125 495277739 495277089 0.000000e+00 715.0
6 TraesCS3B01G416800 chr3D 78.250 1154 206 26 959 2077 495307928 495306785 0.000000e+00 699.0
7 TraesCS3B01G416800 chr3D 77.089 1209 225 33 959 2126 495215496 495214299 0.000000e+00 651.0
8 TraesCS3B01G416800 chr3D 86.261 444 26 18 1 439 495247706 495247293 1.670000e-122 449.0
9 TraesCS3B01G416800 chr3D 92.222 180 14 0 2776 2955 495231870 495231691 3.910000e-64 255.0
10 TraesCS3B01G416800 chr3A 93.318 1287 77 7 1503 2785 634661738 634660457 0.000000e+00 1892.0
11 TraesCS3B01G416800 chr3A 86.197 1036 118 15 1474 2506 634667077 634666064 0.000000e+00 1098.0
12 TraesCS3B01G416800 chr3A 92.621 515 37 1 992 1506 634662565 634662052 0.000000e+00 739.0
13 TraesCS3B01G416800 chr3A 86.232 138 12 4 697 833 634662832 634662701 3.180000e-30 143.0
14 TraesCS3B01G416800 chr3A 80.108 186 18 11 489 665 634663008 634662833 1.490000e-23 121.0
15 TraesCS3B01G416800 chr5D 92.966 981 56 10 1834 2809 369027172 369028144 0.000000e+00 1417.0
16 TraesCS3B01G416800 chr1D 98.077 104 2 0 2953 3056 22443387 22443284 6.730000e-42 182.0
17 TraesCS3B01G416800 chr6B 98.039 102 2 0 2955 3056 23284304 23284203 8.710000e-41 178.0
18 TraesCS3B01G416800 chr6B 98.020 101 2 0 2956 3056 687174443 687174543 3.130000e-40 176.0
19 TraesCS3B01G416800 chr6B 85.294 68 10 0 3 70 620465025 620465092 1.520000e-08 71.3
20 TraesCS3B01G416800 chrUn 98.020 101 2 0 2956 3056 330935983 330936083 3.130000e-40 176.0
21 TraesCS3B01G416800 chr5A 98.020 101 2 0 2956 3056 34380480 34380580 3.130000e-40 176.0
22 TraesCS3B01G416800 chr4B 98.020 101 2 0 2956 3056 573998747 573998647 3.130000e-40 176.0
23 TraesCS3B01G416800 chr4A 97.115 104 3 0 2953 3056 450392761 450392658 3.130000e-40 176.0
24 TraesCS3B01G416800 chr4A 92.308 52 3 1 20 70 158596608 158596557 4.230000e-09 73.1
25 TraesCS3B01G416800 chr4A 92.157 51 3 1 26 76 158600267 158600218 1.520000e-08 71.3
26 TraesCS3B01G416800 chr5B 97.030 101 3 0 2956 3056 548247861 548247761 1.460000e-38 171.0
27 TraesCS3B01G416800 chr2D 94.545 110 6 0 2947 3056 460287716 460287607 1.460000e-38 171.0
28 TraesCS3B01G416800 chr2A 78.571 252 48 4 1489 1737 759323288 759323536 8.770000e-36 161.0
29 TraesCS3B01G416800 chr7A 81.982 111 18 2 3 111 708550392 708550282 3.240000e-15 93.5
30 TraesCS3B01G416800 chr7A 88.158 76 8 1 3 77 708551140 708551065 4.200000e-14 89.8
31 TraesCS3B01G416800 chr1A 84.783 92 10 3 2 93 126321272 126321359 4.200000e-14 89.8
32 TraesCS3B01G416800 chr7D 80.612 98 16 3 3 97 615888955 615888858 4.230000e-09 73.1
33 TraesCS3B01G416800 chr7B 84.211 76 10 2 6 79 708856567 708856492 4.230000e-09 73.1
34 TraesCS3B01G416800 chr1B 84.848 66 10 0 3 68 489824562 489824627 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G416800 chr3B 654177483 654180538 3055 True 5644.0 5644 100.0000 1 3056 1 chr3B.!!$R2 3055
1 TraesCS3B01G416800 chr3B 654307383 654308035 652 True 778.0 778 88.2080 1474 2125 1 chr3B.!!$R3 651
2 TraesCS3B01G416800 chr3B 654082157 654083354 1197 True 638.0 638 76.8400 955 2126 1 chr3B.!!$R1 1171
3 TraesCS3B01G416800 chr3B 654336496 654337102 606 True 470.0 470 80.7570 1474 2077 1 chr3B.!!$R4 603
4 TraesCS3B01G416800 chr3D 495231691 495235218 3527 True 1807.5 3360 92.4245 434 2955 2 chr3D.!!$R5 2521
5 TraesCS3B01G416800 chr3D 495277089 495277739 650 True 715.0 715 86.5240 1474 2125 1 chr3D.!!$R3 651
6 TraesCS3B01G416800 chr3D 495306785 495307928 1143 True 699.0 699 78.2500 959 2077 1 chr3D.!!$R4 1118
7 TraesCS3B01G416800 chr3D 495214299 495215496 1197 True 651.0 651 77.0890 959 2126 1 chr3D.!!$R1 1167
8 TraesCS3B01G416800 chr3A 634660457 634667077 6620 True 798.6 1892 87.6952 489 2785 5 chr3A.!!$R1 2296
9 TraesCS3B01G416800 chr5D 369027172 369028144 972 False 1417.0 1417 92.9660 1834 2809 1 chr5D.!!$F1 975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.095245 CGTCCTTACATGTTGCAGCG 59.905 55.0 2.3 0.32 0.0 5.18 F
819 4408 0.167470 CGCTGTGATCTTTGGCTGTG 59.833 55.0 0.0 0.00 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 5708 0.037303 TGGGCTTCTCTTTCCTGCAG 59.963 55.0 6.78 6.78 0.00 4.41 R
2588 6564 0.168128 ATTTTACGTCTGCGCTTGGC 59.832 50.0 9.73 1.67 42.83 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 8.919145 TCAACTTGTATAAAACATTTTCCTGGT 58.081 29.630 0.00 0.00 38.10 4.00
83 84 8.245195 ACTTGTATAAAACATTTTCCTGGTGT 57.755 30.769 0.00 0.00 38.10 4.16
84 85 9.357161 ACTTGTATAAAACATTTTCCTGGTGTA 57.643 29.630 0.00 0.00 38.10 2.90
122 123 9.675464 ATTATGTGAATGAAAGAAAATTGGCAT 57.325 25.926 0.00 0.00 0.00 4.40
125 126 7.440198 TGTGAATGAAAGAAAATTGGCATGTA 58.560 30.769 0.00 0.00 0.00 2.29
127 128 8.385111 GTGAATGAAAGAAAATTGGCATGTATG 58.615 33.333 0.00 0.00 0.00 2.39
128 129 8.312564 TGAATGAAAGAAAATTGGCATGTATGA 58.687 29.630 0.00 0.00 0.00 2.15
129 130 9.153721 GAATGAAAGAAAATTGGCATGTATGAA 57.846 29.630 0.00 0.00 0.00 2.57
130 131 9.504708 AATGAAAGAAAATTGGCATGTATGAAA 57.495 25.926 0.00 0.00 0.00 2.69
132 133 9.334947 TGAAAGAAAATTGGCATGTATGAAAAA 57.665 25.926 0.00 0.00 0.00 1.94
168 169 9.724839 TTATGAAAACCGAAGTAAGAAACAAAG 57.275 29.630 0.00 0.00 0.00 2.77
170 171 7.818642 TGAAAACCGAAGTAAGAAACAAAGAA 58.181 30.769 0.00 0.00 0.00 2.52
171 172 8.298140 TGAAAACCGAAGTAAGAAACAAAGAAA 58.702 29.630 0.00 0.00 0.00 2.52
174 175 8.628882 AACCGAAGTAAGAAACAAAGAAAATG 57.371 30.769 0.00 0.00 0.00 2.32
175 176 7.992008 ACCGAAGTAAGAAACAAAGAAAATGA 58.008 30.769 0.00 0.00 0.00 2.57
176 177 8.463607 ACCGAAGTAAGAAACAAAGAAAATGAA 58.536 29.630 0.00 0.00 0.00 2.57
236 237 8.950208 AAAAATCCAAAGAAAACCGATGTAAA 57.050 26.923 0.00 0.00 0.00 2.01
237 238 7.940178 AAATCCAAAGAAAACCGATGTAAAC 57.060 32.000 0.00 0.00 0.00 2.01
238 239 6.642707 ATCCAAAGAAAACCGATGTAAACA 57.357 33.333 0.00 0.00 0.00 2.83
239 240 6.067263 TCCAAAGAAAACCGATGTAAACAG 57.933 37.500 0.00 0.00 0.00 3.16
240 241 5.591067 TCCAAAGAAAACCGATGTAAACAGT 59.409 36.000 0.00 0.00 0.00 3.55
241 242 5.685511 CCAAAGAAAACCGATGTAAACAGTG 59.314 40.000 0.00 0.00 0.00 3.66
242 243 6.459024 CCAAAGAAAACCGATGTAAACAGTGA 60.459 38.462 0.00 0.00 0.00 3.41
243 244 6.687081 AAGAAAACCGATGTAAACAGTGAA 57.313 33.333 0.00 0.00 0.00 3.18
244 245 6.687081 AGAAAACCGATGTAAACAGTGAAA 57.313 33.333 0.00 0.00 0.00 2.69
246 247 7.712797 AGAAAACCGATGTAAACAGTGAAAAT 58.287 30.769 0.00 0.00 0.00 1.82
247 248 7.860872 AGAAAACCGATGTAAACAGTGAAAATC 59.139 33.333 0.00 0.00 0.00 2.17
248 249 5.277601 ACCGATGTAAACAGTGAAAATCG 57.722 39.130 0.00 3.99 36.19 3.34
249 250 4.088648 CCGATGTAAACAGTGAAAATCGC 58.911 43.478 0.00 0.00 35.36 4.58
250 251 3.773549 CGATGTAAACAGTGAAAATCGCG 59.226 43.478 0.00 0.00 30.95 5.87
251 252 4.433674 CGATGTAAACAGTGAAAATCGCGA 60.434 41.667 13.09 13.09 30.95 5.87
252 253 5.545658 ATGTAAACAGTGAAAATCGCGAT 57.454 34.783 17.62 17.62 30.95 4.58
253 254 6.507299 CGATGTAAACAGTGAAAATCGCGATA 60.507 38.462 24.00 3.08 30.95 2.92
254 255 6.469139 TGTAAACAGTGAAAATCGCGATAA 57.531 33.333 24.00 5.80 30.95 1.75
255 256 6.889494 TGTAAACAGTGAAAATCGCGATAAA 58.111 32.000 24.00 5.42 30.95 1.40
258 259 5.856126 ACAGTGAAAATCGCGATAAAGAA 57.144 34.783 24.00 4.65 30.95 2.52
260 261 6.664515 ACAGTGAAAATCGCGATAAAGAAAA 58.335 32.000 24.00 1.80 30.95 2.29
261 262 7.305474 ACAGTGAAAATCGCGATAAAGAAAAT 58.695 30.769 24.00 0.00 30.95 1.82
262 263 7.481798 ACAGTGAAAATCGCGATAAAGAAAATC 59.518 33.333 24.00 11.71 30.95 2.17
264 265 7.481798 AGTGAAAATCGCGATAAAGAAAATCAC 59.518 33.333 24.00 22.63 30.95 3.06
265 266 7.270365 GTGAAAATCGCGATAAAGAAAATCACA 59.730 33.333 24.00 5.26 33.15 3.58
266 267 7.481483 TGAAAATCGCGATAAAGAAAATCACAG 59.519 33.333 24.00 0.00 0.00 3.66
267 268 4.857871 TCGCGATAAAGAAAATCACAGG 57.142 40.909 3.71 0.00 0.00 4.00
268 269 4.500127 TCGCGATAAAGAAAATCACAGGA 58.500 39.130 3.71 0.00 0.00 3.86
270 271 5.410132 TCGCGATAAAGAAAATCACAGGAAA 59.590 36.000 3.71 0.00 0.00 3.13
273 274 7.201266 CGCGATAAAGAAAATCACAGGAAAAAG 60.201 37.037 0.00 0.00 0.00 2.27
274 275 7.807907 GCGATAAAGAAAATCACAGGAAAAAGA 59.192 33.333 0.00 0.00 0.00 2.52
275 276 9.118236 CGATAAAGAAAATCACAGGAAAAAGAC 57.882 33.333 0.00 0.00 0.00 3.01
277 278 6.451064 AAGAAAATCACAGGAAAAAGACGT 57.549 33.333 0.00 0.00 0.00 4.34
278 279 5.821204 AGAAAATCACAGGAAAAAGACGTG 58.179 37.500 0.00 0.00 0.00 4.49
279 280 3.626028 AATCACAGGAAAAAGACGTGC 57.374 42.857 0.00 0.00 0.00 5.34
280 281 2.325583 TCACAGGAAAAAGACGTGCT 57.674 45.000 0.00 0.00 0.00 4.40
281 282 1.939934 TCACAGGAAAAAGACGTGCTG 59.060 47.619 0.00 0.00 38.97 4.41
282 283 0.663153 ACAGGAAAAAGACGTGCTGC 59.337 50.000 0.00 0.00 36.73 5.25
285 286 0.663153 GGAAAAAGACGTGCTGCAGT 59.337 50.000 16.64 3.27 0.00 4.40
286 287 1.065551 GGAAAAAGACGTGCTGCAGTT 59.934 47.619 16.64 0.00 0.00 3.16
288 289 3.058224 GGAAAAAGACGTGCTGCAGTTAT 60.058 43.478 16.64 0.00 0.00 1.89
290 291 2.169832 AAGACGTGCTGCAGTTATGT 57.830 45.000 16.64 15.67 0.00 2.29
291 292 3.313012 AAGACGTGCTGCAGTTATGTA 57.687 42.857 16.64 0.00 0.00 2.29
293 294 2.231478 AGACGTGCTGCAGTTATGTACT 59.769 45.455 16.64 11.81 37.68 2.73
296 297 3.116300 CGTGCTGCAGTTATGTACTAGG 58.884 50.000 16.64 0.00 34.56 3.02
297 298 2.866762 GTGCTGCAGTTATGTACTAGGC 59.133 50.000 16.64 0.00 34.56 3.93
299 300 3.126831 GCTGCAGTTATGTACTAGGCTG 58.873 50.000 16.64 0.00 34.56 4.85
303 304 4.120589 GCAGTTATGTACTAGGCTGGTTC 58.879 47.826 9.37 4.54 34.56 3.62
304 305 4.382685 GCAGTTATGTACTAGGCTGGTTCA 60.383 45.833 9.37 11.08 34.56 3.18
305 306 5.109903 CAGTTATGTACTAGGCTGGTTCAC 58.890 45.833 9.37 2.63 34.56 3.18
307 308 1.913778 TGTACTAGGCTGGTTCACGA 58.086 50.000 9.37 0.00 0.00 4.35
308 309 1.542915 TGTACTAGGCTGGTTCACGAC 59.457 52.381 9.37 1.02 0.00 4.34
328 329 3.365265 CCAGGCTGGTGGCGAAAC 61.365 66.667 25.74 0.00 44.18 2.78
329 330 3.726517 CAGGCTGGTGGCGAAACG 61.727 66.667 6.61 0.00 44.18 3.60
330 331 4.250305 AGGCTGGTGGCGAAACGT 62.250 61.111 0.00 0.00 44.18 3.99
331 332 3.723348 GGCTGGTGGCGAAACGTC 61.723 66.667 0.00 0.00 42.94 4.34
332 333 3.723348 GCTGGTGGCGAAACGTCC 61.723 66.667 0.00 0.00 0.00 4.79
333 334 2.030562 CTGGTGGCGAAACGTCCT 59.969 61.111 0.00 0.00 0.00 3.85
334 335 1.597027 CTGGTGGCGAAACGTCCTT 60.597 57.895 0.00 0.00 0.00 3.36
335 336 0.320073 CTGGTGGCGAAACGTCCTTA 60.320 55.000 0.00 0.00 0.00 2.69
336 337 0.600782 TGGTGGCGAAACGTCCTTAC 60.601 55.000 0.00 0.00 0.00 2.34
337 338 0.600782 GGTGGCGAAACGTCCTTACA 60.601 55.000 0.00 0.00 0.00 2.41
338 339 1.435577 GTGGCGAAACGTCCTTACAT 58.564 50.000 0.00 0.00 0.00 2.29
339 340 1.127951 GTGGCGAAACGTCCTTACATG 59.872 52.381 0.00 0.00 0.00 3.21
340 341 1.270412 TGGCGAAACGTCCTTACATGT 60.270 47.619 2.69 2.69 0.00 3.21
341 342 1.802365 GGCGAAACGTCCTTACATGTT 59.198 47.619 2.30 0.00 0.00 2.71
342 343 2.412325 GGCGAAACGTCCTTACATGTTG 60.412 50.000 2.30 0.00 0.00 3.33
344 345 2.222213 CGAAACGTCCTTACATGTTGCA 59.778 45.455 2.30 0.00 0.00 4.08
345 346 3.664276 CGAAACGTCCTTACATGTTGCAG 60.664 47.826 2.30 0.00 0.00 4.41
347 348 0.095245 CGTCCTTACATGTTGCAGCG 59.905 55.000 2.30 0.32 0.00 5.18
348 349 0.447801 GTCCTTACATGTTGCAGCGG 59.552 55.000 2.30 0.00 0.00 5.52
349 350 0.676466 TCCTTACATGTTGCAGCGGG 60.676 55.000 2.30 0.00 0.00 6.13
350 351 1.137404 CTTACATGTTGCAGCGGGC 59.863 57.895 2.30 0.00 45.13 6.13
360 361 1.064783 GCAGCGGGCAAGAAATAGC 59.935 57.895 0.00 0.00 43.97 2.97
361 362 1.379642 GCAGCGGGCAAGAAATAGCT 61.380 55.000 0.00 0.00 43.97 3.32
362 363 0.379669 CAGCGGGCAAGAAATAGCTG 59.620 55.000 0.00 0.80 44.51 4.24
363 364 1.064783 GCGGGCAAGAAATAGCTGC 59.935 57.895 0.00 0.00 0.00 5.25
364 365 1.729881 CGGGCAAGAAATAGCTGCC 59.270 57.895 0.00 3.68 44.31 4.85
366 367 1.064783 GGCAAGAAATAGCTGCCGC 59.935 57.895 0.00 0.00 35.86 6.53
367 368 1.297893 GCAAGAAATAGCTGCCGCG 60.298 57.895 0.00 0.00 42.32 6.46
369 370 0.302890 CAAGAAATAGCTGCCGCGAG 59.697 55.000 8.23 0.00 42.32 5.03
370 371 0.175760 AAGAAATAGCTGCCGCGAGA 59.824 50.000 8.23 0.00 42.32 4.04
371 372 0.390860 AGAAATAGCTGCCGCGAGAT 59.609 50.000 8.23 0.00 42.32 2.75
373 374 2.232452 AGAAATAGCTGCCGCGAGATAT 59.768 45.455 8.23 3.27 42.32 1.63
376 377 0.452184 TAGCTGCCGCGAGATATAGC 59.548 55.000 8.23 7.87 42.32 2.97
377 378 1.807573 GCTGCCGCGAGATATAGCC 60.808 63.158 8.23 0.00 0.00 3.93
378 379 1.153745 CTGCCGCGAGATATAGCCC 60.154 63.158 8.23 0.00 0.00 5.19
379 380 2.184579 GCCGCGAGATATAGCCCC 59.815 66.667 8.23 0.00 0.00 5.80
381 382 2.490217 CGCGAGATATAGCCCCGG 59.510 66.667 0.00 0.00 0.00 5.73
382 383 2.184579 GCGAGATATAGCCCCGGC 59.815 66.667 0.00 0.00 42.33 6.13
396 397 4.745751 CGGCGGGCTAACGAACCA 62.746 66.667 0.00 0.00 35.47 3.67
397 398 2.124860 GGCGGGCTAACGAACCAT 60.125 61.111 0.00 0.00 35.47 3.55
400 401 1.743623 CGGGCTAACGAACCATGCA 60.744 57.895 0.00 0.00 35.47 3.96
401 402 1.095228 CGGGCTAACGAACCATGCAT 61.095 55.000 0.00 0.00 35.47 3.96
402 403 1.102978 GGGCTAACGAACCATGCATT 58.897 50.000 0.00 0.00 0.00 3.56
403 404 2.294074 GGGCTAACGAACCATGCATTA 58.706 47.619 0.00 0.00 0.00 1.90
404 405 2.290641 GGGCTAACGAACCATGCATTAG 59.709 50.000 0.00 0.00 0.00 1.73
405 406 2.290641 GGCTAACGAACCATGCATTAGG 59.709 50.000 0.00 0.00 0.00 2.69
406 407 2.290641 GCTAACGAACCATGCATTAGGG 59.709 50.000 7.89 4.15 35.97 3.53
407 408 1.102978 AACGAACCATGCATTAGGGC 58.897 50.000 7.89 0.00 32.00 5.19
416 417 0.253044 TGCATTAGGGCAGACCAGTC 59.747 55.000 0.00 0.00 43.89 3.51
417 418 0.464554 GCATTAGGGCAGACCAGTCC 60.465 60.000 0.00 0.00 43.89 3.85
418 419 0.181350 CATTAGGGCAGACCAGTCCC 59.819 60.000 0.00 0.00 43.89 4.46
419 420 0.988678 ATTAGGGCAGACCAGTCCCC 60.989 60.000 0.00 4.43 43.89 4.81
420 421 3.635869 TAGGGCAGACCAGTCCCCC 62.636 68.421 13.61 13.61 43.89 5.40
479 480 7.330700 AGTTTCTTTGACATTCTTTCGCAAAAA 59.669 29.630 0.00 0.00 0.00 1.94
523 4108 9.751542 GACATTATATATAACCGGAGAATGGAG 57.248 37.037 9.46 0.00 0.00 3.86
563 4148 3.060138 TGCACGTCGCTAGTTAAAAACTG 60.060 43.478 10.54 0.00 40.30 3.16
569 4154 4.694037 GTCGCTAGTTAAAAACTGGTGGAT 59.306 41.667 14.21 0.00 46.54 3.41
735 4324 6.369615 TCCGGTAAACTTAGCACTGAATTTAC 59.630 38.462 0.00 0.00 33.67 2.01
766 4355 0.740737 GCTGATTGCTTGCCCGTAAT 59.259 50.000 0.00 0.00 38.95 1.89
767 4356 1.134946 GCTGATTGCTTGCCCGTAATT 59.865 47.619 0.00 0.00 38.95 1.40
768 4357 2.357637 GCTGATTGCTTGCCCGTAATTA 59.642 45.455 0.00 0.00 38.95 1.40
769 4358 3.181491 GCTGATTGCTTGCCCGTAATTAA 60.181 43.478 0.00 0.00 38.95 1.40
800 4389 2.287668 GCTGCTGGCATGATCAGAAATC 60.288 50.000 17.21 3.79 41.35 2.17
819 4408 0.167470 CGCTGTGATCTTTGGCTGTG 59.833 55.000 0.00 0.00 0.00 3.66
839 4428 2.107705 GCTGCTTGCATCTGCTGAT 58.892 52.632 14.48 0.00 42.66 2.90
861 4450 1.617850 TGAAATTGCCATTCGTTGCCT 59.382 42.857 0.00 0.00 0.00 4.75
884 4473 6.471233 TGATCGTCAGAAGGATCAGTTATT 57.529 37.500 10.14 0.00 46.51 1.40
886 4475 5.011090 TCGTCAGAAGGATCAGTTATTGG 57.989 43.478 0.00 0.00 0.00 3.16
902 4491 5.782845 AGTTATTGGGGCTATTTGTTTGGAA 59.217 36.000 0.00 0.00 0.00 3.53
903 4492 4.824479 ATTGGGGCTATTTGTTTGGAAG 57.176 40.909 0.00 0.00 0.00 3.46
925 4514 1.336148 TGCGTCTGTTAGTACCGGTTG 60.336 52.381 15.04 0.00 0.00 3.77
937 4526 0.953960 ACCGGTTGCCGTGAAAGATC 60.954 55.000 0.00 0.00 46.80 2.75
941 4530 0.672401 GTTGCCGTGAAAGATCGGGA 60.672 55.000 5.78 0.00 45.85 5.14
951 4540 4.292178 GATCGGGAGGCTCAGCGG 62.292 72.222 17.69 4.48 0.00 5.52
986 4602 8.773033 AGCCCATATCAGATTCAGTTAAATTT 57.227 30.769 0.00 0.00 0.00 1.82
999 4615 5.538053 TCAGTTAAATTTTGCCCATCTGTCA 59.462 36.000 0.00 0.00 0.00 3.58
1100 4716 2.186826 ACCTGCTTGTGGTCAACGC 61.187 57.895 0.00 0.00 31.03 4.84
1116 4732 2.094659 CGCCTACTCGCACACCAAG 61.095 63.158 0.00 0.00 0.00 3.61
1174 4790 3.203040 CCCTTTCATGGTAGGAGGACATT 59.797 47.826 13.65 0.00 33.13 2.71
1269 4885 7.655236 TTTCCTCGTCGATAAAAATGTTACA 57.345 32.000 0.00 0.00 0.00 2.41
1272 4888 7.092079 TCCTCGTCGATAAAAATGTTACAGAA 58.908 34.615 0.00 0.00 0.00 3.02
1273 4889 7.599621 TCCTCGTCGATAAAAATGTTACAGAAA 59.400 33.333 0.00 0.00 0.00 2.52
1329 4945 1.659601 CAGCATGAGAAGCAAGACTCG 59.340 52.381 0.00 0.00 39.69 4.18
1456 5072 4.759183 TCAACGATGATTGTTTCACCATCA 59.241 37.500 0.00 0.00 37.11 3.07
1581 5541 2.737180 CTCACTGCACACCGGTCT 59.263 61.111 2.59 0.00 0.00 3.85
1590 5550 1.095228 CACACCGGTCTGTGCTTGTT 61.095 55.000 2.59 0.00 39.93 2.83
1620 5580 0.532573 CGGTCTTCAAGGCAGAGCTA 59.467 55.000 0.00 0.00 36.75 3.32
1637 5597 1.689258 GCTATTTGGCCCCATGAAGGT 60.689 52.381 0.00 0.00 34.66 3.50
1647 5607 1.449601 CATGAAGGTAGGCGCGGTT 60.450 57.895 8.83 0.00 0.00 4.44
1665 5625 3.057596 CGGTTGCCAGTGTCATACAAATT 60.058 43.478 0.00 0.00 0.00 1.82
1718 5679 5.448632 CCTTGCTAAGCTTTATTTACACCGG 60.449 44.000 3.20 0.00 0.00 5.28
1747 5708 1.000283 CCGAGATGGAGGTAGACATGC 60.000 57.143 0.00 0.00 42.00 4.06
1750 5711 1.415659 AGATGGAGGTAGACATGCTGC 59.584 52.381 0.00 0.00 0.00 5.25
1818 5782 3.128764 CGGCGGCAGATAGATACAATCTA 59.871 47.826 10.53 0.00 45.23 1.98
1869 5833 8.542497 AAAAGTTATGCAAACTCATAGACGTA 57.458 30.769 12.60 0.00 31.33 3.57
1873 5837 3.920446 TGCAAACTCATAGACGTAAGCA 58.080 40.909 0.00 0.00 45.62 3.91
2088 6053 4.263018 ACGGTTAGTTCCTGAAACCTAC 57.737 45.455 0.00 0.00 40.44 3.18
2189 6155 4.665212 AGACATTTTACTTGCATGCATCG 58.335 39.130 23.37 17.81 0.00 3.84
2254 6228 2.551459 GCACCATCCTATGTTGATCTGC 59.449 50.000 0.00 0.00 0.00 4.26
2375 6349 3.935315 TGATGCCTCTCTGTTCTCAAAG 58.065 45.455 0.00 0.00 0.00 2.77
2401 6375 9.914131 GATATTATTACCAAATTTGCTCCCTTC 57.086 33.333 12.92 0.00 0.00 3.46
2441 6415 4.863131 GGATTGTACTAAGTGTCAGGTTCG 59.137 45.833 0.00 0.00 0.00 3.95
2535 6509 5.935206 TGACTATTGCTTGTGGTCGATTAAA 59.065 36.000 0.00 0.00 0.00 1.52
2618 6595 3.003480 AGACGTAAAATCCTTGCTCTGC 58.997 45.455 0.00 0.00 0.00 4.26
2758 6736 4.667519 AAACAAGAGTCCTAGTCGTGTT 57.332 40.909 9.36 9.36 46.83 3.32
2785 7785 8.877779 CATCAAGTGCTTTGCCTATACTATATC 58.122 37.037 0.00 0.00 36.70 1.63
2793 7793 8.973182 GCTTTGCCTATACTATATCCTAGAAGT 58.027 37.037 0.00 0.00 0.00 3.01
2849 7849 6.715347 ATGAAGAATAAAACATGCCCTACC 57.285 37.500 0.00 0.00 0.00 3.18
2850 7850 5.826643 TGAAGAATAAAACATGCCCTACCT 58.173 37.500 0.00 0.00 0.00 3.08
2877 7877 2.595386 GCTTTAACCACTGAATTGCCG 58.405 47.619 0.00 0.00 0.00 5.69
2893 7893 4.806342 TTGCCGTCAAGTTTTAGTCTTC 57.194 40.909 0.00 0.00 0.00 2.87
2906 7906 9.543783 AAGTTTTAGTCTTCGTTTCTTAGATGT 57.456 29.630 0.00 0.00 0.00 3.06
2917 7917 5.334105 CGTTTCTTAGATGTGTGACAAAGGG 60.334 44.000 0.00 0.00 0.00 3.95
2927 7927 5.197451 TGTGTGACAAAGGGTATCACTTTT 58.803 37.500 5.32 0.00 42.65 2.27
2965 7965 8.827177 TTTAGTCATGGTTACTGTTAGAGTTG 57.173 34.615 0.00 0.00 35.96 3.16
2966 7966 6.420913 AGTCATGGTTACTGTTAGAGTTGT 57.579 37.500 0.00 0.00 35.96 3.32
2967 7967 6.223852 AGTCATGGTTACTGTTAGAGTTGTG 58.776 40.000 0.00 0.00 35.96 3.33
2968 7968 5.989777 GTCATGGTTACTGTTAGAGTTGTGT 59.010 40.000 0.00 0.00 35.96 3.72
2969 7969 6.145696 GTCATGGTTACTGTTAGAGTTGTGTC 59.854 42.308 0.00 0.00 35.96 3.67
2970 7970 4.613944 TGGTTACTGTTAGAGTTGTGTCG 58.386 43.478 0.00 0.00 35.96 4.35
2971 7971 4.338964 TGGTTACTGTTAGAGTTGTGTCGA 59.661 41.667 0.00 0.00 35.96 4.20
2972 7972 5.163530 TGGTTACTGTTAGAGTTGTGTCGAA 60.164 40.000 0.00 0.00 35.96 3.71
2973 7973 5.924825 GGTTACTGTTAGAGTTGTGTCGAAT 59.075 40.000 0.00 0.00 35.96 3.34
2974 7974 7.086376 GGTTACTGTTAGAGTTGTGTCGAATA 58.914 38.462 0.00 0.00 35.96 1.75
2975 7975 7.758528 GGTTACTGTTAGAGTTGTGTCGAATAT 59.241 37.037 0.00 0.00 35.96 1.28
2976 7976 9.136952 GTTACTGTTAGAGTTGTGTCGAATATT 57.863 33.333 0.00 0.00 35.96 1.28
2977 7977 7.582435 ACTGTTAGAGTTGTGTCGAATATTG 57.418 36.000 0.00 0.00 0.00 1.90
2978 7978 7.152645 ACTGTTAGAGTTGTGTCGAATATTGT 58.847 34.615 0.00 0.00 0.00 2.71
2979 7979 7.116376 ACTGTTAGAGTTGTGTCGAATATTGTG 59.884 37.037 0.00 0.00 0.00 3.33
2980 7980 6.926826 TGTTAGAGTTGTGTCGAATATTGTGT 59.073 34.615 0.00 0.00 0.00 3.72
2981 7981 8.083462 TGTTAGAGTTGTGTCGAATATTGTGTA 58.917 33.333 0.00 0.00 0.00 2.90
2982 7982 6.946229 AGAGTTGTGTCGAATATTGTGTAC 57.054 37.500 0.00 0.00 0.00 2.90
2983 7983 6.452242 AGAGTTGTGTCGAATATTGTGTACA 58.548 36.000 0.00 0.00 0.00 2.90
2984 7984 6.365247 AGAGTTGTGTCGAATATTGTGTACAC 59.635 38.462 19.36 19.36 38.13 2.90
2985 7985 5.118050 AGTTGTGTCGAATATTGTGTACACG 59.882 40.000 20.61 7.44 39.98 4.49
2986 7986 3.921630 TGTGTCGAATATTGTGTACACGG 59.078 43.478 20.61 4.55 39.98 4.94
2987 7987 3.922240 GTGTCGAATATTGTGTACACGGT 59.078 43.478 20.61 13.79 0.00 4.83
2988 7988 5.094812 GTGTCGAATATTGTGTACACGGTA 58.905 41.667 20.61 15.41 0.00 4.02
2989 7989 5.228635 GTGTCGAATATTGTGTACACGGTAG 59.771 44.000 20.61 8.52 0.00 3.18
2990 7990 4.736793 GTCGAATATTGTGTACACGGTAGG 59.263 45.833 20.61 7.14 0.00 3.18
2991 7991 4.398988 TCGAATATTGTGTACACGGTAGGT 59.601 41.667 20.61 8.38 0.00 3.08
2992 7992 5.104374 CGAATATTGTGTACACGGTAGGTT 58.896 41.667 20.61 10.45 0.00 3.50
2993 7993 6.094742 TCGAATATTGTGTACACGGTAGGTTA 59.905 38.462 20.61 5.40 0.00 2.85
2994 7994 6.197096 CGAATATTGTGTACACGGTAGGTTAC 59.803 42.308 20.61 6.22 0.00 2.50
2995 7995 4.870123 ATTGTGTACACGGTAGGTTACA 57.130 40.909 20.61 0.00 0.00 2.41
2996 7996 3.921119 TGTGTACACGGTAGGTTACAG 57.079 47.619 20.61 0.00 0.00 2.74
2997 7997 3.221771 TGTGTACACGGTAGGTTACAGT 58.778 45.455 20.61 0.00 37.58 3.55
2998 7998 3.636300 TGTGTACACGGTAGGTTACAGTT 59.364 43.478 20.61 0.00 34.89 3.16
2999 7999 3.983344 GTGTACACGGTAGGTTACAGTTG 59.017 47.826 10.84 0.00 34.89 3.16
3000 8000 2.825861 ACACGGTAGGTTACAGTTGG 57.174 50.000 0.00 0.00 34.89 3.77
3001 8001 2.318908 ACACGGTAGGTTACAGTTGGA 58.681 47.619 0.00 0.00 34.89 3.53
3002 8002 2.036346 ACACGGTAGGTTACAGTTGGAC 59.964 50.000 0.00 0.00 34.89 4.02
3003 8003 2.298163 CACGGTAGGTTACAGTTGGACT 59.702 50.000 0.00 0.00 34.89 3.85
3004 8004 2.560105 ACGGTAGGTTACAGTTGGACTC 59.440 50.000 0.00 0.00 33.28 3.36
3005 8005 2.824341 CGGTAGGTTACAGTTGGACTCT 59.176 50.000 0.00 0.00 0.00 3.24
3006 8006 3.367087 CGGTAGGTTACAGTTGGACTCTG 60.367 52.174 0.00 0.00 38.68 3.35
3007 8007 3.830755 GGTAGGTTACAGTTGGACTCTGA 59.169 47.826 0.00 0.00 36.81 3.27
3008 8008 4.082136 GGTAGGTTACAGTTGGACTCTGAG 60.082 50.000 2.45 2.45 36.81 3.35
3009 8009 3.577919 AGGTTACAGTTGGACTCTGAGT 58.422 45.455 10.66 10.66 36.81 3.41
3010 8010 4.737578 AGGTTACAGTTGGACTCTGAGTA 58.262 43.478 10.86 0.00 36.81 2.59
3011 8011 4.767928 AGGTTACAGTTGGACTCTGAGTAG 59.232 45.833 10.86 0.00 36.81 2.57
3012 8012 4.523558 GGTTACAGTTGGACTCTGAGTAGT 59.476 45.833 10.86 5.68 36.81 2.73
3013 8013 5.709164 GGTTACAGTTGGACTCTGAGTAGTA 59.291 44.000 10.86 4.80 36.81 1.82
3014 8014 6.377712 GGTTACAGTTGGACTCTGAGTAGTAT 59.622 42.308 10.86 0.00 36.81 2.12
3015 8015 7.093858 GGTTACAGTTGGACTCTGAGTAGTATT 60.094 40.741 10.86 0.00 36.81 1.89
3016 8016 6.274157 ACAGTTGGACTCTGAGTAGTATTG 57.726 41.667 10.86 9.43 36.81 1.90
3017 8017 5.775701 ACAGTTGGACTCTGAGTAGTATTGT 59.224 40.000 10.86 10.02 36.81 2.71
3018 8018 6.096036 CAGTTGGACTCTGAGTAGTATTGTG 58.904 44.000 10.86 0.00 35.20 3.33
3019 8019 5.775701 AGTTGGACTCTGAGTAGTATTGTGT 59.224 40.000 10.86 0.00 0.00 3.72
3020 8020 6.267928 AGTTGGACTCTGAGTAGTATTGTGTT 59.732 38.462 10.86 0.00 0.00 3.32
3021 8021 6.665992 TGGACTCTGAGTAGTATTGTGTTT 57.334 37.500 10.86 0.00 0.00 2.83
3022 8022 7.770366 TGGACTCTGAGTAGTATTGTGTTTA 57.230 36.000 10.86 0.00 0.00 2.01
3023 8023 7.600065 TGGACTCTGAGTAGTATTGTGTTTAC 58.400 38.462 10.86 0.00 0.00 2.01
3024 8024 7.231925 TGGACTCTGAGTAGTATTGTGTTTACA 59.768 37.037 10.86 0.00 34.31 2.41
3025 8025 8.251721 GGACTCTGAGTAGTATTGTGTTTACAT 58.748 37.037 10.86 0.00 36.53 2.29
3028 8028 9.737427 CTCTGAGTAGTATTGTGTTTACATAGG 57.263 37.037 0.00 0.00 36.53 2.57
3029 8029 9.470399 TCTGAGTAGTATTGTGTTTACATAGGA 57.530 33.333 0.00 0.00 36.53 2.94
3039 8039 8.642908 TTGTGTTTACATAGGATATGAAGTCG 57.357 34.615 3.87 0.00 36.53 4.18
3040 8040 7.778083 TGTGTTTACATAGGATATGAAGTCGT 58.222 34.615 3.87 0.00 0.00 4.34
3041 8041 7.704899 TGTGTTTACATAGGATATGAAGTCGTG 59.295 37.037 3.87 0.00 0.00 4.35
3042 8042 7.705325 GTGTTTACATAGGATATGAAGTCGTGT 59.295 37.037 3.87 0.00 0.00 4.49
3043 8043 7.919091 TGTTTACATAGGATATGAAGTCGTGTC 59.081 37.037 3.87 0.00 0.00 3.67
3044 8044 5.455056 ACATAGGATATGAAGTCGTGTCC 57.545 43.478 7.96 7.96 41.71 4.02
3051 8051 6.622549 GGATATGAAGTCGTGTCCTAATAGG 58.377 44.000 0.00 0.00 39.29 2.57
3052 8052 6.433404 GGATATGAAGTCGTGTCCTAATAGGA 59.567 42.308 4.61 4.61 43.43 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.757227 CCAGGAAAATGTTTTATACAAGTTGAA 57.243 29.630 10.54 0.00 40.89 2.69
55 56 8.919145 ACCAGGAAAATGTTTTATACAAGTTGA 58.081 29.630 10.54 0.00 40.89 3.18
56 57 8.977505 CACCAGGAAAATGTTTTATACAAGTTG 58.022 33.333 0.00 0.00 40.89 3.16
57 58 8.700973 ACACCAGGAAAATGTTTTATACAAGTT 58.299 29.630 0.00 0.00 40.89 2.66
96 97 9.675464 ATGCCAATTTTCTTTCATTCACATAAT 57.325 25.926 0.00 0.00 0.00 1.28
97 98 8.937884 CATGCCAATTTTCTTTCATTCACATAA 58.062 29.630 0.00 0.00 0.00 1.90
98 99 8.095792 ACATGCCAATTTTCTTTCATTCACATA 58.904 29.630 0.00 0.00 0.00 2.29
100 101 6.289834 ACATGCCAATTTTCTTTCATTCACA 58.710 32.000 0.00 0.00 0.00 3.58
101 102 6.790285 ACATGCCAATTTTCTTTCATTCAC 57.210 33.333 0.00 0.00 0.00 3.18
102 103 8.312564 TCATACATGCCAATTTTCTTTCATTCA 58.687 29.630 0.00 0.00 0.00 2.57
103 104 8.706492 TCATACATGCCAATTTTCTTTCATTC 57.294 30.769 0.00 0.00 0.00 2.67
104 105 9.504708 TTTCATACATGCCAATTTTCTTTCATT 57.495 25.926 0.00 0.00 0.00 2.57
105 106 9.504708 TTTTCATACATGCCAATTTTCTTTCAT 57.495 25.926 0.00 0.00 0.00 2.57
110 111 9.941325 TGTATTTTTCATACATGCCAATTTTCT 57.059 25.926 0.00 0.00 30.34 2.52
142 143 9.724839 CTTTGTTTCTTACTTCGGTTTTCATAA 57.275 29.630 0.00 0.00 0.00 1.90
143 144 9.111613 TCTTTGTTTCTTACTTCGGTTTTCATA 57.888 29.630 0.00 0.00 0.00 2.15
144 145 7.992008 TCTTTGTTTCTTACTTCGGTTTTCAT 58.008 30.769 0.00 0.00 0.00 2.57
145 146 7.380431 TCTTTGTTTCTTACTTCGGTTTTCA 57.620 32.000 0.00 0.00 0.00 2.69
146 147 8.677871 TTTCTTTGTTTCTTACTTCGGTTTTC 57.322 30.769 0.00 0.00 0.00 2.29
147 148 9.647797 ATTTTCTTTGTTTCTTACTTCGGTTTT 57.352 25.926 0.00 0.00 0.00 2.43
148 149 9.083080 CATTTTCTTTGTTTCTTACTTCGGTTT 57.917 29.630 0.00 0.00 0.00 3.27
149 150 8.463607 TCATTTTCTTTGTTTCTTACTTCGGTT 58.536 29.630 0.00 0.00 0.00 4.44
150 151 7.992008 TCATTTTCTTTGTTTCTTACTTCGGT 58.008 30.769 0.00 0.00 0.00 4.69
151 152 8.850454 TTCATTTTCTTTGTTTCTTACTTCGG 57.150 30.769 0.00 0.00 0.00 4.30
211 212 8.822855 GTTTACATCGGTTTTCTTTGGATTTTT 58.177 29.630 0.00 0.00 0.00 1.94
212 213 7.982354 TGTTTACATCGGTTTTCTTTGGATTTT 59.018 29.630 0.00 0.00 0.00 1.82
213 214 7.493367 TGTTTACATCGGTTTTCTTTGGATTT 58.507 30.769 0.00 0.00 0.00 2.17
214 215 7.045126 TGTTTACATCGGTTTTCTTTGGATT 57.955 32.000 0.00 0.00 0.00 3.01
215 216 6.264518 ACTGTTTACATCGGTTTTCTTTGGAT 59.735 34.615 0.00 0.00 0.00 3.41
217 218 5.685511 CACTGTTTACATCGGTTTTCTTTGG 59.314 40.000 0.00 0.00 0.00 3.28
218 219 6.491394 TCACTGTTTACATCGGTTTTCTTTG 58.509 36.000 0.00 0.00 0.00 2.77
219 220 6.687081 TCACTGTTTACATCGGTTTTCTTT 57.313 33.333 0.00 0.00 0.00 2.52
220 221 6.687081 TTCACTGTTTACATCGGTTTTCTT 57.313 33.333 0.00 0.00 0.00 2.52
221 222 6.687081 TTTCACTGTTTACATCGGTTTTCT 57.313 33.333 0.00 0.00 0.00 2.52
222 223 7.149192 CGATTTTCACTGTTTACATCGGTTTTC 60.149 37.037 0.00 0.00 0.00 2.29
223 224 6.635239 CGATTTTCACTGTTTACATCGGTTTT 59.365 34.615 0.00 0.00 0.00 2.43
224 225 6.140110 CGATTTTCACTGTTTACATCGGTTT 58.860 36.000 0.00 0.00 0.00 3.27
225 226 5.685841 CGATTTTCACTGTTTACATCGGTT 58.314 37.500 0.00 0.00 0.00 4.44
226 227 4.378046 GCGATTTTCACTGTTTACATCGGT 60.378 41.667 9.78 0.00 0.00 4.69
227 228 4.088648 GCGATTTTCACTGTTTACATCGG 58.911 43.478 9.78 0.00 0.00 4.18
228 229 3.773549 CGCGATTTTCACTGTTTACATCG 59.226 43.478 0.00 0.00 0.00 3.84
229 230 4.953269 TCGCGATTTTCACTGTTTACATC 58.047 39.130 3.71 0.00 0.00 3.06
230 231 5.545658 ATCGCGATTTTCACTGTTTACAT 57.454 34.783 17.62 0.00 0.00 2.29
231 232 6.469139 TTATCGCGATTTTCACTGTTTACA 57.531 33.333 28.81 0.00 0.00 2.41
232 233 7.231607 TCTTTATCGCGATTTTCACTGTTTAC 58.768 34.615 28.81 0.00 0.00 2.01
234 235 6.236017 TCTTTATCGCGATTTTCACTGTTT 57.764 33.333 28.81 0.53 0.00 2.83
236 237 5.856126 TTCTTTATCGCGATTTTCACTGT 57.144 34.783 28.81 2.01 0.00 3.55
237 238 7.481483 TGATTTTCTTTATCGCGATTTTCACTG 59.519 33.333 28.81 10.66 0.00 3.66
238 239 7.481798 GTGATTTTCTTTATCGCGATTTTCACT 59.518 33.333 28.81 3.75 0.00 3.41
239 240 7.270365 TGTGATTTTCTTTATCGCGATTTTCAC 59.730 33.333 28.81 23.28 35.74 3.18
240 241 7.301789 TGTGATTTTCTTTATCGCGATTTTCA 58.698 30.769 28.81 14.57 35.74 2.69
241 242 7.044706 CCTGTGATTTTCTTTATCGCGATTTTC 60.045 37.037 28.81 12.37 35.74 2.29
242 243 6.747280 CCTGTGATTTTCTTTATCGCGATTTT 59.253 34.615 28.81 6.40 35.74 1.82
243 244 6.093495 TCCTGTGATTTTCTTTATCGCGATTT 59.907 34.615 28.81 7.29 35.74 2.17
244 245 5.584649 TCCTGTGATTTTCTTTATCGCGATT 59.415 36.000 28.81 11.54 35.74 3.34
246 247 4.500127 TCCTGTGATTTTCTTTATCGCGA 58.500 39.130 13.09 13.09 35.74 5.87
247 248 4.857871 TCCTGTGATTTTCTTTATCGCG 57.142 40.909 0.00 0.00 35.74 5.87
248 249 7.807907 TCTTTTTCCTGTGATTTTCTTTATCGC 59.192 33.333 0.00 0.00 34.04 4.58
249 250 9.118236 GTCTTTTTCCTGTGATTTTCTTTATCG 57.882 33.333 0.00 0.00 0.00 2.92
250 251 9.118236 CGTCTTTTTCCTGTGATTTTCTTTATC 57.882 33.333 0.00 0.00 0.00 1.75
251 252 8.630037 ACGTCTTTTTCCTGTGATTTTCTTTAT 58.370 29.630 0.00 0.00 0.00 1.40
252 253 7.913297 CACGTCTTTTTCCTGTGATTTTCTTTA 59.087 33.333 0.00 0.00 32.39 1.85
253 254 6.751888 CACGTCTTTTTCCTGTGATTTTCTTT 59.248 34.615 0.00 0.00 32.39 2.52
254 255 6.265577 CACGTCTTTTTCCTGTGATTTTCTT 58.734 36.000 0.00 0.00 32.39 2.52
255 256 5.733373 GCACGTCTTTTTCCTGTGATTTTCT 60.733 40.000 0.00 0.00 32.39 2.52
258 259 3.632145 AGCACGTCTTTTTCCTGTGATTT 59.368 39.130 0.00 0.00 32.39 2.17
260 261 2.549754 CAGCACGTCTTTTTCCTGTGAT 59.450 45.455 0.00 0.00 32.39 3.06
261 262 1.939934 CAGCACGTCTTTTTCCTGTGA 59.060 47.619 0.00 0.00 32.39 3.58
262 263 1.597937 GCAGCACGTCTTTTTCCTGTG 60.598 52.381 0.00 0.00 0.00 3.66
264 265 0.662619 TGCAGCACGTCTTTTTCCTG 59.337 50.000 0.00 0.00 0.00 3.86
265 266 0.947244 CTGCAGCACGTCTTTTTCCT 59.053 50.000 0.00 0.00 0.00 3.36
266 267 0.663153 ACTGCAGCACGTCTTTTTCC 59.337 50.000 15.27 0.00 0.00 3.13
267 268 2.475200 AACTGCAGCACGTCTTTTTC 57.525 45.000 15.27 0.00 0.00 2.29
268 269 3.315191 ACATAACTGCAGCACGTCTTTTT 59.685 39.130 15.27 0.00 0.00 1.94
270 271 2.494059 ACATAACTGCAGCACGTCTTT 58.506 42.857 15.27 0.66 0.00 2.52
273 274 2.607187 AGTACATAACTGCAGCACGTC 58.393 47.619 15.27 0.00 36.93 4.34
274 275 2.743636 AGTACATAACTGCAGCACGT 57.256 45.000 15.27 8.73 36.93 4.49
275 276 3.116300 CCTAGTACATAACTGCAGCACG 58.884 50.000 15.27 2.27 39.39 5.34
277 278 2.766263 AGCCTAGTACATAACTGCAGCA 59.234 45.455 15.27 1.58 39.39 4.41
278 279 3.126831 CAGCCTAGTACATAACTGCAGC 58.873 50.000 15.27 0.00 39.39 5.25
279 280 3.133003 ACCAGCCTAGTACATAACTGCAG 59.867 47.826 13.48 13.48 39.39 4.41
280 281 3.104512 ACCAGCCTAGTACATAACTGCA 58.895 45.455 0.00 0.00 39.39 4.41
281 282 3.821421 ACCAGCCTAGTACATAACTGC 57.179 47.619 0.00 0.00 39.39 4.40
282 283 5.109903 GTGAACCAGCCTAGTACATAACTG 58.890 45.833 0.00 0.00 39.39 3.16
285 286 4.018490 TCGTGAACCAGCCTAGTACATAA 58.982 43.478 0.00 0.00 0.00 1.90
286 287 3.379372 GTCGTGAACCAGCCTAGTACATA 59.621 47.826 0.00 0.00 0.00 2.29
288 289 1.542915 GTCGTGAACCAGCCTAGTACA 59.457 52.381 0.00 0.00 0.00 2.90
311 312 3.365265 GTTTCGCCACCAGCCTGG 61.365 66.667 9.83 9.83 45.02 4.45
312 313 3.726517 CGTTTCGCCACCAGCCTG 61.727 66.667 0.00 0.00 38.78 4.85
313 314 4.250305 ACGTTTCGCCACCAGCCT 62.250 61.111 0.00 0.00 38.78 4.58
314 315 3.723348 GACGTTTCGCCACCAGCC 61.723 66.667 0.00 0.00 38.78 4.85
315 316 3.723348 GGACGTTTCGCCACCAGC 61.723 66.667 0.00 0.00 38.52 4.85
316 317 0.320073 TAAGGACGTTTCGCCACCAG 60.320 55.000 0.00 0.00 0.00 4.00
319 320 1.127951 CATGTAAGGACGTTTCGCCAC 59.872 52.381 0.00 0.00 0.00 5.01
321 322 1.435577 ACATGTAAGGACGTTTCGCC 58.564 50.000 0.00 0.00 0.00 5.54
324 325 3.810373 CTGCAACATGTAAGGACGTTTC 58.190 45.455 0.00 0.00 0.00 2.78
325 326 2.031157 GCTGCAACATGTAAGGACGTTT 60.031 45.455 0.00 0.00 0.00 3.60
326 327 1.535462 GCTGCAACATGTAAGGACGTT 59.465 47.619 0.00 0.00 0.00 3.99
327 328 1.156736 GCTGCAACATGTAAGGACGT 58.843 50.000 0.00 0.00 0.00 4.34
328 329 0.095245 CGCTGCAACATGTAAGGACG 59.905 55.000 0.00 0.00 0.00 4.79
329 330 0.447801 CCGCTGCAACATGTAAGGAC 59.552 55.000 0.00 0.00 0.00 3.85
330 331 0.676466 CCCGCTGCAACATGTAAGGA 60.676 55.000 0.00 0.00 0.00 3.36
331 332 1.802636 CCCGCTGCAACATGTAAGG 59.197 57.895 0.00 0.00 0.00 2.69
332 333 1.137404 GCCCGCTGCAACATGTAAG 59.863 57.895 0.00 0.00 40.77 2.34
333 334 3.273048 GCCCGCTGCAACATGTAA 58.727 55.556 0.00 0.00 40.77 2.41
342 343 1.064783 GCTATTTCTTGCCCGCTGC 59.935 57.895 0.00 0.00 41.77 5.25
344 345 1.379642 GCAGCTATTTCTTGCCCGCT 61.380 55.000 0.00 0.00 0.00 5.52
345 346 1.064783 GCAGCTATTTCTTGCCCGC 59.935 57.895 0.00 0.00 0.00 6.13
347 348 1.729881 CGGCAGCTATTTCTTGCCC 59.270 57.895 8.96 0.00 42.24 5.36
348 349 1.064783 GCGGCAGCTATTTCTTGCC 59.935 57.895 0.00 4.70 41.84 4.52
349 350 1.297893 CGCGGCAGCTATTTCTTGC 60.298 57.895 7.38 0.00 42.32 4.01
350 351 0.302890 CTCGCGGCAGCTATTTCTTG 59.697 55.000 6.13 0.00 42.32 3.02
351 352 0.175760 TCTCGCGGCAGCTATTTCTT 59.824 50.000 6.13 0.00 42.32 2.52
352 353 0.390860 ATCTCGCGGCAGCTATTTCT 59.609 50.000 6.13 0.00 42.32 2.52
353 354 2.065993 TATCTCGCGGCAGCTATTTC 57.934 50.000 6.13 0.00 42.32 2.17
354 355 2.751166 ATATCTCGCGGCAGCTATTT 57.249 45.000 6.13 0.00 42.32 1.40
357 358 0.452184 GCTATATCTCGCGGCAGCTA 59.548 55.000 6.13 0.00 42.32 3.32
358 359 1.214062 GCTATATCTCGCGGCAGCT 59.786 57.895 6.13 0.00 42.32 4.24
359 360 1.807573 GGCTATATCTCGCGGCAGC 60.808 63.158 6.13 0.00 40.74 5.25
360 361 1.153745 GGGCTATATCTCGCGGCAG 60.154 63.158 6.13 0.00 0.00 4.85
361 362 2.646175 GGGGCTATATCTCGCGGCA 61.646 63.158 6.13 0.00 0.00 5.69
362 363 2.184579 GGGGCTATATCTCGCGGC 59.815 66.667 6.13 0.00 0.00 6.53
363 364 2.490217 CGGGGCTATATCTCGCGG 59.510 66.667 6.13 0.00 34.07 6.46
364 365 2.490217 CCGGGGCTATATCTCGCG 59.510 66.667 0.00 0.00 36.76 5.87
366 367 2.490217 CGCCGGGGCTATATCTCG 59.510 66.667 5.22 0.00 39.32 4.04
367 368 2.893398 CCGCCGGGGCTATATCTC 59.107 66.667 14.15 0.00 39.32 2.75
379 380 4.745751 TGGTTCGTTAGCCCGCCG 62.746 66.667 0.00 0.00 0.00 6.46
381 382 3.098555 CATGGTTCGTTAGCCCGC 58.901 61.111 0.00 0.00 0.00 6.13
382 383 1.095228 ATGCATGGTTCGTTAGCCCG 61.095 55.000 0.00 0.00 0.00 6.13
383 384 1.102978 AATGCATGGTTCGTTAGCCC 58.897 50.000 0.00 0.00 0.00 5.19
384 385 2.290641 CCTAATGCATGGTTCGTTAGCC 59.709 50.000 0.00 0.00 33.73 3.93
385 386 2.290641 CCCTAATGCATGGTTCGTTAGC 59.709 50.000 0.00 0.00 33.73 3.09
386 387 2.290641 GCCCTAATGCATGGTTCGTTAG 59.709 50.000 0.00 0.00 34.45 2.34
387 388 2.294074 GCCCTAATGCATGGTTCGTTA 58.706 47.619 0.00 0.00 0.00 3.18
389 390 0.034574 TGCCCTAATGCATGGTTCGT 60.035 50.000 0.00 0.00 36.04 3.85
390 391 0.664761 CTGCCCTAATGCATGGTTCG 59.335 55.000 0.00 0.00 41.16 3.95
392 393 1.686115 GGTCTGCCCTAATGCATGGTT 60.686 52.381 0.00 0.00 41.16 3.67
393 394 0.106519 GGTCTGCCCTAATGCATGGT 60.107 55.000 0.00 0.00 41.16 3.55
394 395 0.106569 TGGTCTGCCCTAATGCATGG 60.107 55.000 0.00 0.00 41.16 3.66
395 396 1.315690 CTGGTCTGCCCTAATGCATG 58.684 55.000 0.00 0.00 41.16 4.06
396 397 0.921896 ACTGGTCTGCCCTAATGCAT 59.078 50.000 0.00 0.00 41.16 3.96
397 398 0.253044 GACTGGTCTGCCCTAATGCA 59.747 55.000 0.00 0.00 39.37 3.96
400 401 0.988678 GGGGACTGGTCTGCCCTAAT 60.989 60.000 0.00 0.00 41.72 1.73
401 402 1.615424 GGGGACTGGTCTGCCCTAA 60.615 63.158 0.00 0.00 41.72 2.69
402 403 2.040606 GGGGACTGGTCTGCCCTA 59.959 66.667 0.00 0.00 41.72 3.53
435 436 5.602561 AGAAACTGGTCTGCCCTAAATTTTT 59.397 36.000 0.00 0.00 0.00 1.94
438 439 4.388577 AGAAACTGGTCTGCCCTAAATT 57.611 40.909 0.00 0.00 0.00 1.82
439 440 4.388577 AAGAAACTGGTCTGCCCTAAAT 57.611 40.909 0.00 0.00 0.00 1.40
440 441 3.876309 AAGAAACTGGTCTGCCCTAAA 57.124 42.857 0.00 0.00 0.00 1.85
492 493 9.938280 TTCTCCGGTTATATATAATGTCAAAGG 57.062 33.333 8.40 5.39 0.00 3.11
495 496 9.884636 CCATTCTCCGGTTATATATAATGTCAA 57.115 33.333 8.40 0.00 0.00 3.18
496 497 9.262240 TCCATTCTCCGGTTATATATAATGTCA 57.738 33.333 8.40 0.00 0.00 3.58
497 498 9.751542 CTCCATTCTCCGGTTATATATAATGTC 57.248 37.037 8.40 2.01 0.00 3.06
498 499 8.204836 GCTCCATTCTCCGGTTATATATAATGT 58.795 37.037 8.40 0.00 0.00 2.71
499 500 8.424918 AGCTCCATTCTCCGGTTATATATAATG 58.575 37.037 8.40 4.93 0.00 1.90
500 501 8.554490 AGCTCCATTCTCCGGTTATATATAAT 57.446 34.615 8.40 0.00 0.00 1.28
501 502 7.973048 AGCTCCATTCTCCGGTTATATATAA 57.027 36.000 0.00 0.81 0.00 0.98
523 4108 2.202479 GAATTGGACGCCGCAAGC 60.202 61.111 0.00 0.00 38.52 4.01
669 4258 2.743928 CAGACGAACCCTGCTGGC 60.744 66.667 3.63 0.00 37.83 4.85
766 4355 2.783135 CCAGCAGCAAGAGGAACTTAA 58.217 47.619 0.00 0.00 41.55 1.85
767 4356 1.611673 GCCAGCAGCAAGAGGAACTTA 60.612 52.381 0.00 0.00 40.08 2.24
768 4357 0.892814 GCCAGCAGCAAGAGGAACTT 60.893 55.000 0.00 0.00 40.08 2.66
769 4358 1.303155 GCCAGCAGCAAGAGGAACT 60.303 57.895 0.00 0.00 42.51 3.01
788 4377 4.958509 AGATCACAGCGATTTCTGATCAT 58.041 39.130 12.74 0.00 40.98 2.45
790 4379 5.499935 CAAAGATCACAGCGATTTCTGATC 58.500 41.667 0.00 5.11 39.49 2.92
800 4389 0.167470 CACAGCCAAAGATCACAGCG 59.833 55.000 0.00 0.00 0.00 5.18
839 4428 2.945278 GCAACGAATGGCAATTTCAGA 58.055 42.857 0.00 0.00 0.00 3.27
861 4450 6.276091 CAATAACTGATCCTTCTGACGATCA 58.724 40.000 13.24 13.24 41.94 2.92
884 4473 3.252554 ACTTCCAAACAAATAGCCCCA 57.747 42.857 0.00 0.00 0.00 4.96
886 4475 3.325870 GCAACTTCCAAACAAATAGCCC 58.674 45.455 0.00 0.00 0.00 5.19
902 4491 1.068055 CCGGTACTAACAGACGCAACT 60.068 52.381 0.00 0.00 0.00 3.16
903 4492 1.336240 ACCGGTACTAACAGACGCAAC 60.336 52.381 4.49 0.00 0.00 4.17
925 4514 1.521681 CCTCCCGATCTTTCACGGC 60.522 63.158 0.00 0.00 46.59 5.68
941 4530 4.853050 GATGCAGCCGCTGAGCCT 62.853 66.667 24.80 2.19 39.64 4.58
951 4540 2.943690 CTGATATGGGCTATGATGCAGC 59.056 50.000 0.00 0.00 38.35 5.25
957 4546 6.692849 AACTGAATCTGATATGGGCTATGA 57.307 37.500 0.00 0.00 0.00 2.15
986 4602 2.583024 TGACATTGACAGATGGGCAA 57.417 45.000 0.00 0.00 0.00 4.52
999 4615 3.674997 AGACACGCCTGTAAATGACATT 58.325 40.909 0.00 0.00 37.45 2.71
1100 4716 1.741770 GCCTTGGTGTGCGAGTAGG 60.742 63.158 0.00 0.00 0.00 3.18
1116 4732 3.138798 CCAGCAGATGCAGTGGCC 61.139 66.667 7.68 0.00 45.16 5.36
1174 4790 1.725641 CAGTAGAAGATGCGCCAACA 58.274 50.000 4.18 0.00 0.00 3.33
1269 4885 3.515602 ACCTGCACCTTCAGATTTTCT 57.484 42.857 0.00 0.00 36.19 2.52
1272 4888 2.158475 TCCAACCTGCACCTTCAGATTT 60.158 45.455 0.00 0.00 36.19 2.17
1273 4889 1.425066 TCCAACCTGCACCTTCAGATT 59.575 47.619 0.00 0.00 36.19 2.40
1326 4942 4.211164 TCTTTTGCACGAATATATGCCGAG 59.789 41.667 12.83 7.50 41.33 4.63
1329 4945 4.222114 GCTCTTTTGCACGAATATATGCC 58.778 43.478 0.00 0.00 41.33 4.40
1456 5072 2.434884 CACGGCAAGGTCGCATCT 60.435 61.111 0.00 0.00 32.11 2.90
1567 5527 2.108976 CACAGACCGGTGTGCAGT 59.891 61.111 30.13 9.65 41.39 4.40
1590 5550 1.176619 TGAAGACCGAAGACCGAGCA 61.177 55.000 0.00 0.00 41.76 4.26
1620 5580 1.062962 CCTACCTTCATGGGGCCAAAT 60.063 52.381 4.39 0.00 41.11 2.32
1647 5607 5.048782 GTCTTCAATTTGTATGACACTGGCA 60.049 40.000 0.00 0.00 0.00 4.92
1650 5610 7.025365 CCATGTCTTCAATTTGTATGACACTG 58.975 38.462 17.04 15.56 37.28 3.66
1665 5625 3.953612 ACACTTTTGCTTCCATGTCTTCA 59.046 39.130 0.00 0.00 0.00 3.02
1718 5679 2.136196 CTCCATCTCGGGTAGCGAGC 62.136 65.000 0.00 0.00 33.88 5.03
1747 5708 0.037303 TGGGCTTCTCTTTCCTGCAG 59.963 55.000 6.78 6.78 0.00 4.41
1750 5711 2.867109 TCTTGGGCTTCTCTTTCCTG 57.133 50.000 0.00 0.00 0.00 3.86
1818 5782 4.286032 TCACATAGTACCTTCAGCCTTTGT 59.714 41.667 0.00 0.00 0.00 2.83
1869 5833 7.390718 AGAATAAAAATAGTCTTCACCGTGCTT 59.609 33.333 0.00 0.00 0.00 3.91
1873 5837 8.258708 AGCTAGAATAAAAATAGTCTTCACCGT 58.741 33.333 0.00 0.00 0.00 4.83
2088 6053 3.564225 AGTAAGGCTTCAACTTGGAAACG 59.436 43.478 1.30 0.00 0.00 3.60
2189 6155 4.854361 CAGTCATGCATCTAGAACACAC 57.146 45.455 0.00 0.00 0.00 3.82
2254 6228 4.216472 GGTTCAAGTCTTGGCTAAAAGGAG 59.784 45.833 12.66 0.00 0.00 3.69
2375 6349 9.914131 GAAGGGAGCAAATTTGGTAATAATATC 57.086 33.333 22.04 10.79 39.30 1.63
2401 6375 8.432805 AGTACAATCCATAACTAGGAATCCTTG 58.567 37.037 7.30 8.37 38.93 3.61
2515 6489 7.032580 CCATTTTTAATCGACCACAAGCAATA 58.967 34.615 0.00 0.00 0.00 1.90
2588 6564 0.168128 ATTTTACGTCTGCGCTTGGC 59.832 50.000 9.73 1.67 42.83 4.52
2594 6571 1.732259 AGCAAGGATTTTACGTCTGCG 59.268 47.619 0.00 0.00 44.93 5.18
2595 6572 3.003480 AGAGCAAGGATTTTACGTCTGC 58.997 45.455 0.00 0.00 0.00 4.26
2618 6595 0.396435 GGTGGCTTTCCCCCAAAAAG 59.604 55.000 0.00 0.00 36.91 2.27
2666 6644 6.885376 TCGTAAACAAAATAGGCCAAGGAATA 59.115 34.615 5.01 0.00 0.00 1.75
2758 6736 5.102953 AGTATAGGCAAAGCACTTGATGA 57.897 39.130 2.93 0.00 37.17 2.92
2849 7849 2.162681 CAGTGGTTAAAGCCCTTGGAG 58.837 52.381 0.00 0.00 0.00 3.86
2850 7850 1.777878 TCAGTGGTTAAAGCCCTTGGA 59.222 47.619 0.00 0.00 0.00 3.53
2877 7877 9.028185 TCTAAGAAACGAAGACTAAAACTTGAC 57.972 33.333 0.00 0.00 0.00 3.18
2893 7893 5.334105 CCCTTTGTCACACATCTAAGAAACG 60.334 44.000 0.00 0.00 0.00 3.60
2906 7906 7.175990 GGAATAAAAGTGATACCCTTTGTCACA 59.824 37.037 7.39 0.00 43.51 3.58
2940 7940 8.426489 ACAACTCTAACAGTAACCATGACTAAA 58.574 33.333 0.00 0.00 32.30 1.85
2955 7955 6.926826 ACACAATATTCGACACAACTCTAACA 59.073 34.615 0.00 0.00 0.00 2.41
2956 7956 7.347508 ACACAATATTCGACACAACTCTAAC 57.652 36.000 0.00 0.00 0.00 2.34
2957 7957 8.083462 TGTACACAATATTCGACACAACTCTAA 58.917 33.333 0.00 0.00 0.00 2.10
2958 7958 7.539710 GTGTACACAATATTCGACACAACTCTA 59.460 37.037 21.14 0.00 37.66 2.43
2959 7959 6.365247 GTGTACACAATATTCGACACAACTCT 59.635 38.462 21.14 0.00 37.66 3.24
2960 7960 6.522761 GTGTACACAATATTCGACACAACTC 58.477 40.000 21.14 0.00 37.66 3.01
2961 7961 5.118050 CGTGTACACAATATTCGACACAACT 59.882 40.000 24.98 0.00 37.61 3.16
2962 7962 5.302711 CGTGTACACAATATTCGACACAAC 58.697 41.667 24.98 0.00 37.61 3.32
2963 7963 4.386350 CCGTGTACACAATATTCGACACAA 59.614 41.667 24.98 0.00 37.61 3.33
2964 7964 3.921630 CCGTGTACACAATATTCGACACA 59.078 43.478 24.98 3.67 37.61 3.72
2965 7965 3.922240 ACCGTGTACACAATATTCGACAC 59.078 43.478 24.98 0.00 35.07 3.67
2966 7966 4.177165 ACCGTGTACACAATATTCGACA 57.823 40.909 24.98 0.00 0.00 4.35
2967 7967 4.736793 CCTACCGTGTACACAATATTCGAC 59.263 45.833 24.98 0.00 0.00 4.20
2968 7968 4.398988 ACCTACCGTGTACACAATATTCGA 59.601 41.667 24.98 1.25 0.00 3.71
2969 7969 4.675510 ACCTACCGTGTACACAATATTCG 58.324 43.478 24.98 9.58 0.00 3.34
2970 7970 7.035004 TGTAACCTACCGTGTACACAATATTC 58.965 38.462 24.98 7.67 0.00 1.75
2971 7971 6.934056 TGTAACCTACCGTGTACACAATATT 58.066 36.000 24.98 13.02 0.00 1.28
2972 7972 6.153340 ACTGTAACCTACCGTGTACACAATAT 59.847 38.462 24.98 9.71 0.00 1.28
2973 7973 5.476599 ACTGTAACCTACCGTGTACACAATA 59.523 40.000 24.98 14.85 0.00 1.90
2974 7974 4.281688 ACTGTAACCTACCGTGTACACAAT 59.718 41.667 24.98 14.51 0.00 2.71
2975 7975 3.636300 ACTGTAACCTACCGTGTACACAA 59.364 43.478 24.98 9.34 0.00 3.33
2976 7976 3.221771 ACTGTAACCTACCGTGTACACA 58.778 45.455 24.98 5.60 0.00 3.72
2977 7977 3.923017 ACTGTAACCTACCGTGTACAC 57.077 47.619 16.32 16.32 0.00 2.90
2978 7978 3.005684 CCAACTGTAACCTACCGTGTACA 59.994 47.826 0.00 0.00 0.00 2.90
2979 7979 3.255642 TCCAACTGTAACCTACCGTGTAC 59.744 47.826 0.00 0.00 0.00 2.90
2980 7980 3.255642 GTCCAACTGTAACCTACCGTGTA 59.744 47.826 0.00 0.00 0.00 2.90
2981 7981 2.036346 GTCCAACTGTAACCTACCGTGT 59.964 50.000 0.00 0.00 0.00 4.49
2982 7982 2.298163 AGTCCAACTGTAACCTACCGTG 59.702 50.000 0.00 0.00 0.00 4.94
2983 7983 2.560105 GAGTCCAACTGTAACCTACCGT 59.440 50.000 0.00 0.00 0.00 4.83
2984 7984 2.824341 AGAGTCCAACTGTAACCTACCG 59.176 50.000 0.00 0.00 0.00 4.02
2985 7985 3.830755 TCAGAGTCCAACTGTAACCTACC 59.169 47.826 0.00 0.00 36.81 3.18
2986 7986 4.523558 ACTCAGAGTCCAACTGTAACCTAC 59.476 45.833 0.00 0.00 36.81 3.18
2987 7987 4.737578 ACTCAGAGTCCAACTGTAACCTA 58.262 43.478 0.00 0.00 36.81 3.08
2988 7988 3.577919 ACTCAGAGTCCAACTGTAACCT 58.422 45.455 0.00 0.00 36.81 3.50
2989 7989 4.523558 ACTACTCAGAGTCCAACTGTAACC 59.476 45.833 6.27 0.00 36.81 2.85
2990 7990 5.708877 ACTACTCAGAGTCCAACTGTAAC 57.291 43.478 6.27 0.00 36.81 2.50
2991 7991 7.450634 ACAATACTACTCAGAGTCCAACTGTAA 59.549 37.037 6.27 0.00 36.81 2.41
2992 7992 6.946583 ACAATACTACTCAGAGTCCAACTGTA 59.053 38.462 6.27 3.18 36.81 2.74
2993 7993 5.775701 ACAATACTACTCAGAGTCCAACTGT 59.224 40.000 6.27 4.17 36.81 3.55
2994 7994 6.096036 CACAATACTACTCAGAGTCCAACTG 58.904 44.000 6.27 3.54 36.80 3.16
2995 7995 5.775701 ACACAATACTACTCAGAGTCCAACT 59.224 40.000 6.27 0.00 0.00 3.16
2996 7996 6.026947 ACACAATACTACTCAGAGTCCAAC 57.973 41.667 6.27 0.00 0.00 3.77
2997 7997 6.665992 AACACAATACTACTCAGAGTCCAA 57.334 37.500 6.27 0.00 0.00 3.53
2998 7998 6.665992 AAACACAATACTACTCAGAGTCCA 57.334 37.500 6.27 0.00 0.00 4.02
2999 7999 7.600065 TGTAAACACAATACTACTCAGAGTCC 58.400 38.462 6.27 0.00 0.00 3.85
3002 8002 9.737427 CCTATGTAAACACAATACTACTCAGAG 57.263 37.037 0.00 0.00 0.00 3.35
3003 8003 9.470399 TCCTATGTAAACACAATACTACTCAGA 57.530 33.333 0.00 0.00 0.00 3.27
3013 8013 9.261180 CGACTTCATATCCTATGTAAACACAAT 57.739 33.333 0.00 0.00 0.00 2.71
3014 8014 8.255206 ACGACTTCATATCCTATGTAAACACAA 58.745 33.333 0.00 0.00 0.00 3.33
3015 8015 7.704899 CACGACTTCATATCCTATGTAAACACA 59.295 37.037 0.00 0.00 0.00 3.72
3016 8016 7.705325 ACACGACTTCATATCCTATGTAAACAC 59.295 37.037 0.00 0.00 0.00 3.32
3017 8017 7.778083 ACACGACTTCATATCCTATGTAAACA 58.222 34.615 0.00 0.00 0.00 2.83
3018 8018 7.381678 GGACACGACTTCATATCCTATGTAAAC 59.618 40.741 0.00 0.00 0.00 2.01
3019 8019 7.287005 AGGACACGACTTCATATCCTATGTAAA 59.713 37.037 0.00 0.00 34.77 2.01
3020 8020 6.776116 AGGACACGACTTCATATCCTATGTAA 59.224 38.462 0.00 0.00 34.77 2.41
3021 8021 6.304624 AGGACACGACTTCATATCCTATGTA 58.695 40.000 0.00 0.00 34.77 2.29
3022 8022 5.141182 AGGACACGACTTCATATCCTATGT 58.859 41.667 0.00 0.00 34.77 2.29
3023 8023 5.713792 AGGACACGACTTCATATCCTATG 57.286 43.478 0.00 0.00 34.77 2.23
3024 8024 9.179909 CTATTAGGACACGACTTCATATCCTAT 57.820 37.037 0.00 0.00 38.35 2.57
3025 8025 7.610692 CCTATTAGGACACGACTTCATATCCTA 59.389 40.741 3.41 0.00 37.67 2.94
3026 8026 6.434652 CCTATTAGGACACGACTTCATATCCT 59.565 42.308 3.41 0.00 37.67 3.24
3027 8027 6.433404 TCCTATTAGGACACGACTTCATATCC 59.567 42.308 8.42 0.00 40.06 2.59
3028 8028 7.450124 TCCTATTAGGACACGACTTCATATC 57.550 40.000 8.42 0.00 40.06 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.