Multiple sequence alignment - TraesCS3B01G416500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G416500 chr3B 100.000 2348 0 0 1 2348 653991121 653993468 0.000000e+00 4337
1 TraesCS3B01G416500 chr3B 88.176 296 35 0 2049 2344 548053398 548053693 1.030000e-93 353
2 TraesCS3B01G416500 chr3D 91.881 2180 166 10 173 2344 495165427 495167603 0.000000e+00 3035
3 TraesCS3B01G416500 chr3D 95.105 143 7 0 1 143 406223791 406223933 2.350000e-55 226
4 TraesCS3B01G416500 chr3A 91.472 1888 144 16 168 2047 634573343 634575221 0.000000e+00 2579
5 TraesCS3B01G416500 chr3A 89.562 297 29 2 2049 2344 523610017 523610312 2.200000e-100 375
6 TraesCS3B01G416500 chr7A 77.465 710 147 10 767 1472 574090433 574091133 1.680000e-111 412
7 TraesCS3B01G416500 chr4B 84.518 394 47 13 173 559 504993475 504993861 6.130000e-101 377
8 TraesCS3B01G416500 chr4B 83.846 390 55 8 175 561 657859542 657859926 4.770000e-97 364
9 TraesCS3B01G416500 chr4B 95.205 146 7 0 1 146 89307618 89307473 5.050000e-57 231
10 TraesCS3B01G416500 chr2A 84.171 398 54 9 168 561 778725897 778726289 6.130000e-101 377
11 TraesCS3B01G416500 chr2A 87.662 308 32 5 2041 2347 176659262 176658960 1.030000e-93 353
12 TraesCS3B01G416500 chr1D 89.865 296 27 3 2049 2343 37440914 37440621 6.130000e-101 377
13 TraesCS3B01G416500 chr1D 96.503 143 5 0 1 143 208460094 208459952 1.080000e-58 237
14 TraesCS3B01G416500 chr1D 96.503 143 5 0 1 143 439147387 439147245 1.080000e-58 237
15 TraesCS3B01G416500 chr6D 84.091 396 51 12 175 564 48675156 48674767 2.850000e-99 372
16 TraesCS3B01G416500 chr6D 95.205 146 7 0 1 146 363631348 363631203 5.050000e-57 231
17 TraesCS3B01G416500 chr4D 88.667 300 32 2 2049 2347 335890565 335890267 4.770000e-97 364
18 TraesCS3B01G416500 chr2D 83.756 394 54 9 170 558 594145935 594146323 4.770000e-97 364
19 TraesCS3B01G416500 chr2D 83.333 402 57 9 168 564 331613406 331613010 1.720000e-96 363
20 TraesCS3B01G416500 chr2D 97.203 143 4 0 1 143 273823927 273824069 2.330000e-60 243
21 TraesCS3B01G416500 chr2D 92.453 159 10 2 1 157 245446397 245446239 2.350000e-55 226
22 TraesCS3B01G416500 chr5B 83.088 408 58 10 175 576 251778767 251778365 6.170000e-96 361
23 TraesCS3B01G416500 chr5B 87.838 296 35 1 2049 2344 686409546 686409840 1.730000e-91 346
24 TraesCS3B01G416500 chr5B 85.321 109 8 4 762 869 710241373 710241474 3.190000e-19 106
25 TraesCS3B01G416500 chr5A 88.294 299 35 0 2049 2347 632834135 632833837 2.220000e-95 359
26 TraesCS3B01G416500 chr5D 87.708 301 34 2 2049 2347 385950373 385950074 4.800000e-92 348
27 TraesCS3B01G416500 chr5D 80.488 328 48 12 574 898 556523783 556523469 1.080000e-58 237
28 TraesCS3B01G416500 chr1B 95.918 147 6 0 1 147 310983254 310983400 3.020000e-59 239
29 TraesCS3B01G416500 chr2B 94.667 150 8 0 1 150 175257960 175257811 1.400000e-57 233
30 TraesCS3B01G416500 chr7D 79.348 184 34 4 767 948 506665751 506665932 2.450000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G416500 chr3B 653991121 653993468 2347 False 4337 4337 100.000 1 2348 1 chr3B.!!$F2 2347
1 TraesCS3B01G416500 chr3D 495165427 495167603 2176 False 3035 3035 91.881 173 2344 1 chr3D.!!$F2 2171
2 TraesCS3B01G416500 chr3A 634573343 634575221 1878 False 2579 2579 91.472 168 2047 1 chr3A.!!$F2 1879
3 TraesCS3B01G416500 chr7A 574090433 574091133 700 False 412 412 77.465 767 1472 1 chr7A.!!$F1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.110486 TCTTTGGCTCCCCTTGTGTC 59.89 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1602 0.179111 CTCGGCAGCCTCGTCAAATA 60.179 55.0 10.54 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.739276 AATCTCTAGGTGTGATTAAATTGACAA 57.261 29.630 0.00 0.00 37.19 3.18
29 30 8.547967 TCTCTAGGTGTGATTAAATTGACAAC 57.452 34.615 0.00 0.00 0.00 3.32
30 31 8.375506 TCTCTAGGTGTGATTAAATTGACAACT 58.624 33.333 0.00 0.00 39.65 3.16
31 32 8.547967 TCTAGGTGTGATTAAATTGACAACTC 57.452 34.615 0.00 0.00 37.53 3.01
32 33 8.154203 TCTAGGTGTGATTAAATTGACAACTCA 58.846 33.333 0.00 0.00 37.53 3.41
33 34 7.581213 AGGTGTGATTAAATTGACAACTCAA 57.419 32.000 0.00 0.00 40.77 3.02
34 35 7.425606 AGGTGTGATTAAATTGACAACTCAAC 58.574 34.615 0.00 0.00 39.28 3.18
35 36 7.285401 AGGTGTGATTAAATTGACAACTCAACT 59.715 33.333 0.00 0.00 39.28 3.16
36 37 7.379529 GGTGTGATTAAATTGACAACTCAACTG 59.620 37.037 0.00 0.00 39.28 3.16
37 38 6.917477 TGTGATTAAATTGACAACTCAACTGC 59.083 34.615 0.00 0.00 39.28 4.40
38 39 7.141363 GTGATTAAATTGACAACTCAACTGCT 58.859 34.615 0.00 0.00 39.28 4.24
39 40 8.289618 GTGATTAAATTGACAACTCAACTGCTA 58.710 33.333 0.00 0.00 39.28 3.49
40 41 8.845227 TGATTAAATTGACAACTCAACTGCTAA 58.155 29.630 0.00 0.00 39.28 3.09
41 42 9.846248 GATTAAATTGACAACTCAACTGCTAAT 57.154 29.630 0.00 0.00 39.28 1.73
44 45 7.986085 AATTGACAACTCAACTGCTAATAGT 57.014 32.000 0.00 0.00 39.28 2.12
45 46 7.986085 ATTGACAACTCAACTGCTAATAGTT 57.014 32.000 0.00 0.00 39.28 2.24
46 47 9.502091 AATTGACAACTCAACTGCTAATAGTTA 57.498 29.630 0.00 0.00 39.28 2.24
47 48 7.884816 TGACAACTCAACTGCTAATAGTTAC 57.115 36.000 0.00 0.00 38.78 2.50
48 49 7.438564 TGACAACTCAACTGCTAATAGTTACA 58.561 34.615 0.00 0.00 38.78 2.41
49 50 7.929245 TGACAACTCAACTGCTAATAGTTACAA 59.071 33.333 0.00 0.00 38.78 2.41
50 51 8.671384 ACAACTCAACTGCTAATAGTTACAAA 57.329 30.769 0.00 0.00 38.78 2.83
51 52 9.284968 ACAACTCAACTGCTAATAGTTACAAAT 57.715 29.630 0.00 0.00 38.78 2.32
65 66 6.775594 AGTTACAAATATTCTTTGGCTCCC 57.224 37.500 3.09 0.00 33.92 4.30
66 67 5.656859 AGTTACAAATATTCTTTGGCTCCCC 59.343 40.000 3.09 0.00 33.92 4.81
67 68 4.337264 ACAAATATTCTTTGGCTCCCCT 57.663 40.909 3.09 0.00 33.92 4.79
68 69 4.687976 ACAAATATTCTTTGGCTCCCCTT 58.312 39.130 3.09 0.00 33.92 3.95
69 70 4.467438 ACAAATATTCTTTGGCTCCCCTTG 59.533 41.667 3.09 0.00 33.92 3.61
70 71 4.337264 AATATTCTTTGGCTCCCCTTGT 57.663 40.909 0.00 0.00 0.00 3.16
71 72 1.928868 ATTCTTTGGCTCCCCTTGTG 58.071 50.000 0.00 0.00 0.00 3.33
72 73 0.555769 TTCTTTGGCTCCCCTTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
73 74 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.000 0.00 0.00 0.00 3.67
74 75 1.228124 TTTGGCTCCCCTTGTGTCG 60.228 57.895 0.00 0.00 0.00 4.35
75 76 1.701031 TTTGGCTCCCCTTGTGTCGA 61.701 55.000 0.00 0.00 0.00 4.20
76 77 1.701031 TTGGCTCCCCTTGTGTCGAA 61.701 55.000 0.00 0.00 0.00 3.71
77 78 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
78 79 0.744771 GGCTCCCCTTGTGTCGAATC 60.745 60.000 0.00 0.00 0.00 2.52
79 80 0.250513 GCTCCCCTTGTGTCGAATCT 59.749 55.000 0.00 0.00 0.00 2.40
80 81 1.480954 GCTCCCCTTGTGTCGAATCTA 59.519 52.381 0.00 0.00 0.00 1.98
81 82 2.103263 GCTCCCCTTGTGTCGAATCTAT 59.897 50.000 0.00 0.00 0.00 1.98
82 83 3.321111 GCTCCCCTTGTGTCGAATCTATA 59.679 47.826 0.00 0.00 0.00 1.31
83 84 4.021016 GCTCCCCTTGTGTCGAATCTATAT 60.021 45.833 0.00 0.00 0.00 0.86
84 85 5.185249 GCTCCCCTTGTGTCGAATCTATATA 59.815 44.000 0.00 0.00 0.00 0.86
85 86 6.127310 GCTCCCCTTGTGTCGAATCTATATAT 60.127 42.308 0.00 0.00 0.00 0.86
86 87 7.579723 GCTCCCCTTGTGTCGAATCTATATATT 60.580 40.741 0.00 0.00 0.00 1.28
87 88 8.202461 TCCCCTTGTGTCGAATCTATATATTT 57.798 34.615 0.00 0.00 0.00 1.40
88 89 8.094548 TCCCCTTGTGTCGAATCTATATATTTG 58.905 37.037 0.00 0.00 0.00 2.32
89 90 7.334421 CCCCTTGTGTCGAATCTATATATTTGG 59.666 40.741 0.00 0.00 0.00 3.28
90 91 7.334421 CCCTTGTGTCGAATCTATATATTTGGG 59.666 40.741 0.00 0.00 0.00 4.12
91 92 7.878127 CCTTGTGTCGAATCTATATATTTGGGT 59.122 37.037 0.00 0.00 0.00 4.51
92 93 9.273016 CTTGTGTCGAATCTATATATTTGGGTT 57.727 33.333 0.00 0.00 0.00 4.11
93 94 8.601845 TGTGTCGAATCTATATATTTGGGTTG 57.398 34.615 0.00 0.00 0.00 3.77
94 95 8.425703 TGTGTCGAATCTATATATTTGGGTTGA 58.574 33.333 0.00 0.00 0.00 3.18
95 96 9.268268 GTGTCGAATCTATATATTTGGGTTGAA 57.732 33.333 0.00 0.00 0.00 2.69
114 115 7.849160 GGTTGAATACTCTACCCTCTAAAACT 58.151 38.462 0.00 0.00 40.45 2.66
115 116 7.764901 GGTTGAATACTCTACCCTCTAAAACTG 59.235 40.741 0.00 0.00 40.45 3.16
116 117 8.312564 GTTGAATACTCTACCCTCTAAAACTGT 58.687 37.037 0.00 0.00 0.00 3.55
117 118 8.431910 TGAATACTCTACCCTCTAAAACTGTT 57.568 34.615 0.00 0.00 0.00 3.16
118 119 8.311836 TGAATACTCTACCCTCTAAAACTGTTG 58.688 37.037 0.00 0.00 0.00 3.33
119 120 4.895961 ACTCTACCCTCTAAAACTGTTGC 58.104 43.478 0.00 0.00 0.00 4.17
120 121 3.921677 TCTACCCTCTAAAACTGTTGCG 58.078 45.455 0.00 0.00 0.00 4.85
121 122 2.922740 ACCCTCTAAAACTGTTGCGA 57.077 45.000 0.00 0.00 0.00 5.10
122 123 3.418684 ACCCTCTAAAACTGTTGCGAT 57.581 42.857 0.00 0.00 0.00 4.58
123 124 3.335579 ACCCTCTAAAACTGTTGCGATC 58.664 45.455 0.00 0.00 0.00 3.69
124 125 2.678336 CCCTCTAAAACTGTTGCGATCC 59.322 50.000 0.00 0.00 0.00 3.36
125 126 2.678336 CCTCTAAAACTGTTGCGATCCC 59.322 50.000 0.00 0.00 0.00 3.85
126 127 2.678336 CTCTAAAACTGTTGCGATCCCC 59.322 50.000 0.00 0.00 0.00 4.81
127 128 2.304761 TCTAAAACTGTTGCGATCCCCT 59.695 45.455 0.00 0.00 0.00 4.79
128 129 2.871096 AAAACTGTTGCGATCCCCTA 57.129 45.000 0.00 0.00 0.00 3.53
129 130 3.366052 AAAACTGTTGCGATCCCCTAT 57.634 42.857 0.00 0.00 0.00 2.57
130 131 4.497291 AAAACTGTTGCGATCCCCTATA 57.503 40.909 0.00 0.00 0.00 1.31
131 132 3.470645 AACTGTTGCGATCCCCTATAC 57.529 47.619 0.00 0.00 0.00 1.47
132 133 2.679082 ACTGTTGCGATCCCCTATACT 58.321 47.619 0.00 0.00 0.00 2.12
133 134 3.039011 ACTGTTGCGATCCCCTATACTT 58.961 45.455 0.00 0.00 0.00 2.24
134 135 3.181465 ACTGTTGCGATCCCCTATACTTG 60.181 47.826 0.00 0.00 0.00 3.16
135 136 2.769663 TGTTGCGATCCCCTATACTTGT 59.230 45.455 0.00 0.00 0.00 3.16
136 137 3.131396 GTTGCGATCCCCTATACTTGTG 58.869 50.000 0.00 0.00 0.00 3.33
137 138 1.691976 TGCGATCCCCTATACTTGTGG 59.308 52.381 0.00 0.00 0.00 4.17
138 139 1.002087 GCGATCCCCTATACTTGTGGG 59.998 57.143 0.00 0.00 40.59 4.61
139 140 2.326428 CGATCCCCTATACTTGTGGGT 58.674 52.381 0.00 0.00 39.31 4.51
140 141 2.704065 CGATCCCCTATACTTGTGGGTT 59.296 50.000 0.00 0.00 39.31 4.11
141 142 3.899360 CGATCCCCTATACTTGTGGGTTA 59.101 47.826 0.00 0.00 39.31 2.85
142 143 4.530946 CGATCCCCTATACTTGTGGGTTAT 59.469 45.833 0.00 0.00 39.31 1.89
143 144 5.012768 CGATCCCCTATACTTGTGGGTTATT 59.987 44.000 0.00 0.00 39.31 1.40
144 145 6.211986 CGATCCCCTATACTTGTGGGTTATTA 59.788 42.308 0.00 0.00 39.31 0.98
145 146 7.569599 ATCCCCTATACTTGTGGGTTATTAG 57.430 40.000 0.00 0.00 39.31 1.73
146 147 6.455241 TCCCCTATACTTGTGGGTTATTAGT 58.545 40.000 0.00 0.00 39.31 2.24
147 148 6.910290 TCCCCTATACTTGTGGGTTATTAGTT 59.090 38.462 0.00 0.00 39.31 2.24
148 149 6.996282 CCCCTATACTTGTGGGTTATTAGTTG 59.004 42.308 0.00 0.00 39.31 3.16
149 150 6.996282 CCCTATACTTGTGGGTTATTAGTTGG 59.004 42.308 0.00 0.00 36.32 3.77
150 151 7.366191 CCCTATACTTGTGGGTTATTAGTTGGT 60.366 40.741 0.00 0.00 36.32 3.67
151 152 8.707449 CCTATACTTGTGGGTTATTAGTTGGTA 58.293 37.037 0.00 0.00 0.00 3.25
153 154 8.974060 ATACTTGTGGGTTATTAGTTGGTATG 57.026 34.615 0.00 0.00 0.00 2.39
154 155 6.786122 ACTTGTGGGTTATTAGTTGGTATGT 58.214 36.000 0.00 0.00 0.00 2.29
155 156 6.882678 ACTTGTGGGTTATTAGTTGGTATGTC 59.117 38.462 0.00 0.00 0.00 3.06
156 157 5.747342 TGTGGGTTATTAGTTGGTATGTCC 58.253 41.667 0.00 0.00 0.00 4.02
157 158 5.128205 GTGGGTTATTAGTTGGTATGTCCC 58.872 45.833 0.00 0.00 34.77 4.46
158 159 5.041015 TGGGTTATTAGTTGGTATGTCCCT 58.959 41.667 0.00 0.00 34.77 4.20
159 160 5.493250 TGGGTTATTAGTTGGTATGTCCCTT 59.507 40.000 0.00 0.00 34.77 3.95
160 161 6.011451 TGGGTTATTAGTTGGTATGTCCCTTT 60.011 38.462 0.00 0.00 34.77 3.11
161 162 6.320418 GGGTTATTAGTTGGTATGTCCCTTTG 59.680 42.308 0.00 0.00 34.77 2.77
162 163 6.320418 GGTTATTAGTTGGTATGTCCCTTTGG 59.680 42.308 0.00 0.00 34.77 3.28
163 164 5.789574 ATTAGTTGGTATGTCCCTTTGGA 57.210 39.130 0.00 0.00 38.75 3.53
171 172 4.449900 TCCCTTTGGACCAACCCT 57.550 55.556 6.36 0.00 35.03 4.34
187 188 1.216678 ACCCTTGGACCAACATGTCAA 59.783 47.619 1.69 0.00 36.97 3.18
242 244 4.331968 GTCCCACTCAATTACCAACATCA 58.668 43.478 0.00 0.00 0.00 3.07
320 322 7.201947 CCCACACTTATCATTGTGAGATAGAGA 60.202 40.741 3.30 0.00 45.03 3.10
323 325 9.194972 ACACTTATCATTGTGAGATAGAGAGAA 57.805 33.333 0.00 0.00 37.59 2.87
343 345 2.902608 ACTGACATGTAGGTCTTGGGA 58.097 47.619 0.00 0.00 38.61 4.37
374 376 8.765488 TGGTCATATAACATGATCAAATGGTT 57.235 30.769 0.00 5.16 36.34 3.67
389 391 5.298276 TCAAATGGTTTGACCTGACAGTAAC 59.702 40.000 0.93 0.85 44.21 2.50
390 392 3.916359 TGGTTTGACCTGACAGTAACA 57.084 42.857 0.93 0.00 39.58 2.41
393 395 4.406326 TGGTTTGACCTGACAGTAACAGTA 59.594 41.667 0.93 0.00 39.58 2.74
404 406 6.179756 TGACAGTAACAGTATCAATGCCATT 58.820 36.000 0.00 0.00 0.00 3.16
432 434 6.340962 ACCGAATATCTAATGGAACGATGA 57.659 37.500 0.00 0.00 0.00 2.92
468 471 6.039717 GGTATCTAATGCCATTTTGAGCAAGA 59.960 38.462 0.00 0.00 43.36 3.02
477 480 5.163794 GCCATTTTGAGCAAGAATTTCATGG 60.164 40.000 4.01 3.70 0.00 3.66
636 639 9.073587 ACCCTCCCTTAATCAATATGCTATTAT 57.926 33.333 0.00 0.00 0.00 1.28
650 653 8.848474 ATATGCTATTATGAGTACCAACCAAC 57.152 34.615 0.00 0.00 0.00 3.77
764 767 2.418628 GCATTGCATGTACACGGTTACT 59.581 45.455 3.15 0.00 0.00 2.24
908 912 1.674962 GCCTGCACCTCATTCATCTTC 59.325 52.381 0.00 0.00 0.00 2.87
912 916 1.329906 GCACCTCATTCATCTTCAGCG 59.670 52.381 0.00 0.00 0.00 5.18
963 967 4.892655 TCAAAGTTTCATAAGCGCATACG 58.107 39.130 11.47 0.00 44.07 3.06
1013 1017 1.139058 GTCAGCAATGAGGACCGGTAT 59.861 52.381 7.34 0.00 0.00 2.73
1032 1036 6.432162 CCGGTATCCTCATCATCATCATTTTT 59.568 38.462 0.00 0.00 0.00 1.94
1039 1043 6.040054 CCTCATCATCATCATTTTTGCCACTA 59.960 38.462 0.00 0.00 0.00 2.74
1065 1069 1.175983 TGGCTTACCCCTTTGCAACG 61.176 55.000 0.00 0.00 33.59 4.10
1068 1072 1.892209 CTTACCCCTTTGCAACGTCT 58.108 50.000 0.00 0.00 0.00 4.18
1092 1096 4.810033 GCCGAGGAAGAGTGGTATCCTATA 60.810 50.000 0.00 0.00 43.55 1.31
1116 1120 0.404040 ACCCCGACAATGAACCACAT 59.596 50.000 0.00 0.00 41.45 3.21
1122 1126 2.160219 CGACAATGAACCACATGTCCAG 59.840 50.000 0.00 0.00 39.39 3.86
1128 1132 0.773644 AACCACATGTCCAGGAGCTT 59.226 50.000 7.66 0.00 0.00 3.74
1131 1135 0.037303 CACATGTCCAGGAGCTTGGT 59.963 55.000 4.36 0.00 39.35 3.67
1134 1138 2.360475 GTCCAGGAGCTTGGTGGC 60.360 66.667 4.36 0.00 39.35 5.01
1188 1192 2.476185 CGACGGGCTCAAATTCATCAAC 60.476 50.000 0.00 0.00 0.00 3.18
1334 1338 1.667154 CGCACCCTCATCTCCTTCGA 61.667 60.000 0.00 0.00 0.00 3.71
1339 1343 1.195115 CCTCATCTCCTTCGAACCCA 58.805 55.000 0.00 0.00 0.00 4.51
1446 1453 7.307692 GCGGTGTGGAAAACATAATTGAATTTT 60.308 33.333 0.00 0.00 41.97 1.82
1482 1489 2.025699 TGGCCTACAAAATGGGGAGTAC 60.026 50.000 3.32 0.00 0.00 2.73
1536 1545 2.161855 GTGGTCATGTTGCATCTCCAA 58.838 47.619 0.00 0.00 0.00 3.53
1578 1587 1.182667 TCTAAGTAGCAAGCTCGCCA 58.817 50.000 0.00 0.00 0.00 5.69
1593 1602 1.816214 CGCCATTTTTGTTGCGCGTT 61.816 50.000 8.43 0.00 40.58 4.84
1599 1608 4.084849 CCATTTTTGTTGCGCGTTATTTGA 60.085 37.500 8.43 0.00 0.00 2.69
1600 1609 4.424476 TTTTTGTTGCGCGTTATTTGAC 57.576 36.364 8.43 0.00 0.00 3.18
1612 1621 0.179111 TATTTGACGAGGCTGCCGAG 60.179 55.000 13.96 13.66 0.00 4.63
1652 1661 6.769608 TGATACTATCAATCGTGCATGTTC 57.230 37.500 5.68 0.00 36.11 3.18
1768 1779 3.266510 ACACTCAGACAAGAGCAAACA 57.733 42.857 0.00 0.00 39.26 2.83
1792 1803 8.156165 ACAGCCAATCCAAATTTTCTAATGAAA 58.844 29.630 0.00 0.00 40.08 2.69
1846 1857 6.585695 ACGAAGGACTATCAAGAACTACAA 57.414 37.500 0.00 0.00 0.00 2.41
1983 1998 9.802039 TTTGACTTCAAACATAACTTATAGGGT 57.198 29.630 0.07 0.00 40.55 4.34
2025 2040 9.981114 AATGGAGTGTTGTAATTTTAGGAAAAG 57.019 29.630 0.00 0.00 33.22 2.27
2027 2042 9.629878 TGGAGTGTTGTAATTTTAGGAAAAGTA 57.370 29.630 0.00 0.00 33.22 2.24
2098 2113 5.279960 GGGTAAAAGGCCTCACAATCAATTT 60.280 40.000 5.23 1.57 0.00 1.82
2100 2115 7.364673 GGGTAAAAGGCCTCACAATCAATTTAT 60.365 37.037 5.23 0.00 0.00 1.40
2112 2127 7.818446 TCACAATCAATTTATGTGTCCAATTGG 59.182 33.333 19.08 19.08 43.72 3.16
2154 2169 6.096705 TGTGACCAAGTCAACAATTTCTCAAT 59.903 34.615 0.00 0.00 44.49 2.57
2257 2272 8.547967 TTATGACTTAGTCACCTGATTTTGAC 57.452 34.615 17.92 0.00 45.65 3.18
2259 2274 5.163248 TGACTTAGTCACCTGATTTTGACCA 60.163 40.000 11.42 0.00 42.73 4.02
2282 2297 6.264067 CCAGGTCAATAATTTCTCAAGGATCC 59.736 42.308 2.48 2.48 0.00 3.36
2283 2298 7.059156 CAGGTCAATAATTTCTCAAGGATCCT 58.941 38.462 9.02 9.02 0.00 3.24
2286 2301 7.013750 GGTCAATAATTTCTCAAGGATCCTTCC 59.986 40.741 24.67 12.97 42.96 3.46
2330 2345 9.561069 TTATCATACTCCCTAATTTTGAAGCTC 57.439 33.333 0.00 0.00 0.00 4.09
2333 2348 7.770897 TCATACTCCCTAATTTTGAAGCTCTTC 59.229 37.037 2.80 2.80 39.91 2.87
2336 2351 7.106890 ACTCCCTAATTTTGAAGCTCTTCTAC 58.893 38.462 10.56 0.00 40.14 2.59
2344 2359 4.377839 TGAAGCTCTTCTACTCGATTGG 57.622 45.455 10.56 0.00 40.14 3.16
2345 2360 3.131223 TGAAGCTCTTCTACTCGATTGGG 59.869 47.826 10.56 0.00 40.14 4.12
2346 2361 3.019799 AGCTCTTCTACTCGATTGGGA 57.980 47.619 0.00 0.00 0.00 4.37
2347 2362 3.366396 AGCTCTTCTACTCGATTGGGAA 58.634 45.455 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.739276 TTGTCAATTTAATCACACCTAGAGATT 57.261 29.630 0.00 0.00 40.12 2.40
3 4 9.167311 GTTGTCAATTTAATCACACCTAGAGAT 57.833 33.333 0.00 0.00 0.00 2.75
4 5 8.375506 AGTTGTCAATTTAATCACACCTAGAGA 58.624 33.333 0.00 0.00 0.00 3.10
5 6 8.553459 AGTTGTCAATTTAATCACACCTAGAG 57.447 34.615 0.00 0.00 0.00 2.43
6 7 8.154203 TGAGTTGTCAATTTAATCACACCTAGA 58.846 33.333 0.00 0.00 0.00 2.43
7 8 8.322906 TGAGTTGTCAATTTAATCACACCTAG 57.677 34.615 0.00 0.00 0.00 3.02
8 9 8.564574 GTTGAGTTGTCAATTTAATCACACCTA 58.435 33.333 0.00 0.00 44.58 3.08
9 10 7.285401 AGTTGAGTTGTCAATTTAATCACACCT 59.715 33.333 0.00 0.00 44.58 4.00
10 11 7.379529 CAGTTGAGTTGTCAATTTAATCACACC 59.620 37.037 0.00 0.00 44.58 4.16
11 12 7.096477 GCAGTTGAGTTGTCAATTTAATCACAC 60.096 37.037 0.00 0.00 44.58 3.82
12 13 6.917477 GCAGTTGAGTTGTCAATTTAATCACA 59.083 34.615 0.00 0.00 44.58 3.58
13 14 7.141363 AGCAGTTGAGTTGTCAATTTAATCAC 58.859 34.615 0.00 0.00 44.58 3.06
14 15 7.275888 AGCAGTTGAGTTGTCAATTTAATCA 57.724 32.000 0.00 0.00 44.58 2.57
15 16 9.846248 ATTAGCAGTTGAGTTGTCAATTTAATC 57.154 29.630 0.00 0.00 44.58 1.75
18 19 9.502091 ACTATTAGCAGTTGAGTTGTCAATTTA 57.498 29.630 0.00 0.00 44.58 1.40
19 20 8.396272 ACTATTAGCAGTTGAGTTGTCAATTT 57.604 30.769 0.00 0.00 44.58 1.82
20 21 7.986085 ACTATTAGCAGTTGAGTTGTCAATT 57.014 32.000 0.00 0.00 44.58 2.32
21 22 7.986085 AACTATTAGCAGTTGAGTTGTCAAT 57.014 32.000 0.00 0.00 44.58 2.57
22 23 7.929245 TGTAACTATTAGCAGTTGAGTTGTCAA 59.071 33.333 0.00 0.00 40.55 3.18
23 24 7.438564 TGTAACTATTAGCAGTTGAGTTGTCA 58.561 34.615 0.00 0.00 39.12 3.58
24 25 7.884816 TGTAACTATTAGCAGTTGAGTTGTC 57.115 36.000 0.00 0.00 39.12 3.18
25 26 8.671384 TTTGTAACTATTAGCAGTTGAGTTGT 57.329 30.769 0.00 0.00 39.12 3.32
39 40 8.914011 GGGAGCCAAAGAATATTTGTAACTATT 58.086 33.333 0.00 0.00 0.00 1.73
40 41 7.505923 GGGGAGCCAAAGAATATTTGTAACTAT 59.494 37.037 0.00 0.00 0.00 2.12
41 42 6.831868 GGGGAGCCAAAGAATATTTGTAACTA 59.168 38.462 0.00 0.00 0.00 2.24
42 43 5.656859 GGGGAGCCAAAGAATATTTGTAACT 59.343 40.000 0.00 0.00 0.00 2.24
43 44 5.656859 AGGGGAGCCAAAGAATATTTGTAAC 59.343 40.000 0.00 0.00 0.00 2.50
44 45 5.837829 AGGGGAGCCAAAGAATATTTGTAA 58.162 37.500 0.00 0.00 0.00 2.41
45 46 5.466127 AGGGGAGCCAAAGAATATTTGTA 57.534 39.130 0.00 0.00 0.00 2.41
46 47 4.337264 AGGGGAGCCAAAGAATATTTGT 57.663 40.909 0.00 0.00 0.00 2.83
47 48 4.467438 ACAAGGGGAGCCAAAGAATATTTG 59.533 41.667 0.00 0.00 0.00 2.32
48 49 4.467438 CACAAGGGGAGCCAAAGAATATTT 59.533 41.667 0.00 0.00 0.00 1.40
49 50 4.026052 CACAAGGGGAGCCAAAGAATATT 58.974 43.478 0.00 0.00 0.00 1.28
50 51 3.011708 ACACAAGGGGAGCCAAAGAATAT 59.988 43.478 0.00 0.00 0.00 1.28
51 52 2.378547 ACACAAGGGGAGCCAAAGAATA 59.621 45.455 0.00 0.00 0.00 1.75
52 53 1.147817 ACACAAGGGGAGCCAAAGAAT 59.852 47.619 0.00 0.00 0.00 2.40
53 54 0.555769 ACACAAGGGGAGCCAAAGAA 59.444 50.000 0.00 0.00 0.00 2.52
54 55 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
55 56 1.237285 CGACACAAGGGGAGCCAAAG 61.237 60.000 0.00 0.00 0.00 2.77
56 57 1.228124 CGACACAAGGGGAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
57 58 1.701031 TTCGACACAAGGGGAGCCAA 61.701 55.000 0.00 0.00 0.00 4.52
58 59 1.488705 ATTCGACACAAGGGGAGCCA 61.489 55.000 0.00 0.00 0.00 4.75
59 60 0.744771 GATTCGACACAAGGGGAGCC 60.745 60.000 0.00 0.00 0.00 4.70
60 61 0.250513 AGATTCGACACAAGGGGAGC 59.749 55.000 0.00 0.00 0.00 4.70
61 62 5.730296 ATATAGATTCGACACAAGGGGAG 57.270 43.478 0.00 0.00 0.00 4.30
62 63 7.792364 AATATATAGATTCGACACAAGGGGA 57.208 36.000 0.00 0.00 0.00 4.81
63 64 7.334421 CCAAATATATAGATTCGACACAAGGGG 59.666 40.741 0.00 0.00 0.00 4.79
64 65 7.334421 CCCAAATATATAGATTCGACACAAGGG 59.666 40.741 0.00 0.00 0.00 3.95
65 66 7.878127 ACCCAAATATATAGATTCGACACAAGG 59.122 37.037 0.00 0.00 0.00 3.61
66 67 8.833231 ACCCAAATATATAGATTCGACACAAG 57.167 34.615 0.00 0.00 0.00 3.16
67 68 9.051679 CAACCCAAATATATAGATTCGACACAA 57.948 33.333 0.00 0.00 0.00 3.33
68 69 8.425703 TCAACCCAAATATATAGATTCGACACA 58.574 33.333 0.00 0.00 0.00 3.72
69 70 8.827177 TCAACCCAAATATATAGATTCGACAC 57.173 34.615 0.00 0.00 0.00 3.67
89 90 7.764901 CAGTTTTAGAGGGTAGAGTATTCAACC 59.235 40.741 0.00 0.00 0.00 3.77
90 91 8.312564 ACAGTTTTAGAGGGTAGAGTATTCAAC 58.687 37.037 0.00 0.00 0.00 3.18
91 92 8.431910 ACAGTTTTAGAGGGTAGAGTATTCAA 57.568 34.615 0.00 0.00 0.00 2.69
92 93 8.311836 CAACAGTTTTAGAGGGTAGAGTATTCA 58.688 37.037 0.00 0.00 0.00 2.57
93 94 7.278203 GCAACAGTTTTAGAGGGTAGAGTATTC 59.722 40.741 0.00 0.00 0.00 1.75
94 95 7.104290 GCAACAGTTTTAGAGGGTAGAGTATT 58.896 38.462 0.00 0.00 0.00 1.89
95 96 6.627508 CGCAACAGTTTTAGAGGGTAGAGTAT 60.628 42.308 0.00 0.00 0.00 2.12
96 97 5.336213 CGCAACAGTTTTAGAGGGTAGAGTA 60.336 44.000 0.00 0.00 0.00 2.59
97 98 4.560919 CGCAACAGTTTTAGAGGGTAGAGT 60.561 45.833 0.00 0.00 0.00 3.24
98 99 3.927142 CGCAACAGTTTTAGAGGGTAGAG 59.073 47.826 0.00 0.00 0.00 2.43
99 100 3.575256 TCGCAACAGTTTTAGAGGGTAGA 59.425 43.478 0.00 0.00 0.00 2.59
100 101 3.921677 TCGCAACAGTTTTAGAGGGTAG 58.078 45.455 0.00 0.00 0.00 3.18
101 102 4.501071 GATCGCAACAGTTTTAGAGGGTA 58.499 43.478 0.00 0.00 0.00 3.69
102 103 2.922740 TCGCAACAGTTTTAGAGGGT 57.077 45.000 0.00 0.00 0.00 4.34
103 104 2.678336 GGATCGCAACAGTTTTAGAGGG 59.322 50.000 0.00 0.00 0.00 4.30
104 105 2.678336 GGGATCGCAACAGTTTTAGAGG 59.322 50.000 4.64 0.00 0.00 3.69
105 106 2.678336 GGGGATCGCAACAGTTTTAGAG 59.322 50.000 12.32 0.00 0.00 2.43
106 107 2.304761 AGGGGATCGCAACAGTTTTAGA 59.695 45.455 12.32 0.00 0.00 2.10
107 108 2.711542 AGGGGATCGCAACAGTTTTAG 58.288 47.619 12.32 0.00 0.00 1.85
108 109 2.871096 AGGGGATCGCAACAGTTTTA 57.129 45.000 12.32 0.00 0.00 1.52
109 110 2.871096 TAGGGGATCGCAACAGTTTT 57.129 45.000 12.32 0.00 0.00 2.43
110 111 3.454812 AGTATAGGGGATCGCAACAGTTT 59.545 43.478 12.32 0.00 0.00 2.66
111 112 3.039011 AGTATAGGGGATCGCAACAGTT 58.961 45.455 12.32 0.00 0.00 3.16
112 113 2.679082 AGTATAGGGGATCGCAACAGT 58.321 47.619 12.32 0.00 0.00 3.55
113 114 3.181465 ACAAGTATAGGGGATCGCAACAG 60.181 47.826 12.32 4.14 0.00 3.16
114 115 2.769663 ACAAGTATAGGGGATCGCAACA 59.230 45.455 12.32 0.00 0.00 3.33
115 116 3.131396 CACAAGTATAGGGGATCGCAAC 58.869 50.000 12.32 4.19 0.00 4.17
116 117 2.104111 CCACAAGTATAGGGGATCGCAA 59.896 50.000 12.32 0.00 0.00 4.85
117 118 1.691976 CCACAAGTATAGGGGATCGCA 59.308 52.381 12.32 0.00 0.00 5.10
118 119 1.002087 CCCACAAGTATAGGGGATCGC 59.998 57.143 0.06 0.06 43.57 4.58
125 126 7.571025 ACCAACTAATAACCCACAAGTATAGG 58.429 38.462 0.00 0.00 0.00 2.57
128 129 8.554011 ACATACCAACTAATAACCCACAAGTAT 58.446 33.333 0.00 0.00 0.00 2.12
129 130 7.920227 ACATACCAACTAATAACCCACAAGTA 58.080 34.615 0.00 0.00 0.00 2.24
130 131 6.786122 ACATACCAACTAATAACCCACAAGT 58.214 36.000 0.00 0.00 0.00 3.16
131 132 6.317893 GGACATACCAACTAATAACCCACAAG 59.682 42.308 0.00 0.00 38.79 3.16
132 133 6.181908 GGACATACCAACTAATAACCCACAA 58.818 40.000 0.00 0.00 38.79 3.33
133 134 5.339365 GGGACATACCAACTAATAACCCACA 60.339 44.000 0.00 0.00 41.20 4.17
134 135 5.104235 AGGGACATACCAACTAATAACCCAC 60.104 44.000 0.00 0.00 41.20 4.61
135 136 5.041015 AGGGACATACCAACTAATAACCCA 58.959 41.667 0.00 0.00 41.20 4.51
136 137 5.641789 AGGGACATACCAACTAATAACCC 57.358 43.478 0.00 0.00 41.20 4.11
137 138 6.320418 CCAAAGGGACATACCAACTAATAACC 59.680 42.308 0.00 0.00 41.20 2.85
138 139 7.114095 TCCAAAGGGACATACCAACTAATAAC 58.886 38.462 0.00 0.00 38.64 1.89
139 140 7.273457 TCCAAAGGGACATACCAACTAATAA 57.727 36.000 0.00 0.00 38.64 1.40
140 141 6.894735 TCCAAAGGGACATACCAACTAATA 57.105 37.500 0.00 0.00 38.64 0.98
141 142 5.789574 TCCAAAGGGACATACCAACTAAT 57.210 39.130 0.00 0.00 38.64 1.73
154 155 0.187361 CAAGGGTTGGTCCAAAGGGA 59.813 55.000 5.69 0.00 42.29 4.20
155 156 0.831711 CCAAGGGTTGGTCCAAAGGG 60.832 60.000 5.69 0.08 45.93 3.95
156 157 2.745379 CCAAGGGTTGGTCCAAAGG 58.255 57.895 5.69 0.13 45.93 3.11
165 166 1.613437 GACATGTTGGTCCAAGGGTTG 59.387 52.381 3.96 3.26 0.00 3.77
166 167 1.216678 TGACATGTTGGTCCAAGGGTT 59.783 47.619 3.96 0.00 36.97 4.11
171 172 3.476552 GAGAGTTGACATGTTGGTCCAA 58.523 45.455 0.00 0.00 36.97 3.53
187 188 5.922960 ACATAGTGAGATAGAGGGAGAGT 57.077 43.478 0.00 0.00 0.00 3.24
293 295 3.609853 TCTCACAATGATAAGTGTGGGC 58.390 45.455 10.70 0.00 44.41 5.36
320 322 3.261897 CCCAAGACCTACATGTCAGTTCT 59.738 47.826 0.00 0.00 37.73 3.01
323 325 2.902608 TCCCAAGACCTACATGTCAGT 58.097 47.619 0.00 0.00 37.73 3.41
369 371 4.141482 ACTGTTACTGTCAGGTCAAACCAT 60.141 41.667 4.53 0.00 41.95 3.55
374 376 6.413783 TTGATACTGTTACTGTCAGGTCAA 57.586 37.500 4.53 11.77 38.26 3.18
381 383 6.683974 AATGGCATTGATACTGTTACTGTC 57.316 37.500 12.82 0.00 0.00 3.51
404 406 8.945481 TCGTTCCATTAGATATTCGGTAAAAA 57.055 30.769 0.00 0.00 0.00 1.94
410 412 6.156519 TGTCATCGTTCCATTAGATATTCGG 58.843 40.000 0.00 0.00 0.00 4.30
448 450 7.332430 TGAAATTCTTGCTCAAAATGGCATTAG 59.668 33.333 14.05 8.60 38.30 1.73
454 456 6.167685 TCCATGAAATTCTTGCTCAAAATGG 58.832 36.000 0.00 1.06 0.00 3.16
468 471 9.439500 CTCAAAATACCATTGTTCCATGAAATT 57.561 29.630 0.00 0.00 0.00 1.82
504 507 9.155975 CTCACTACTCAGTTTTGCTATTACAAT 57.844 33.333 0.00 0.00 30.46 2.71
507 510 7.813148 TGTCTCACTACTCAGTTTTGCTATTAC 59.187 37.037 0.00 0.00 30.46 1.89
512 515 4.141937 TGTGTCTCACTACTCAGTTTTGCT 60.142 41.667 1.72 0.00 35.11 3.91
558 561 9.159254 TGGAGTGACATAGATAAATTGATAGGT 57.841 33.333 0.00 0.00 0.00 3.08
908 912 1.280746 CTTGTTGTGGTGCTCGCTG 59.719 57.895 0.00 0.00 0.00 5.18
912 916 0.110056 CGATGCTTGTTGTGGTGCTC 60.110 55.000 0.00 0.00 0.00 4.26
949 953 1.858458 GCTTGACGTATGCGCTTATGA 59.142 47.619 24.54 4.96 42.83 2.15
963 967 2.335011 GTGCGGGTTTGGCTTGAC 59.665 61.111 0.00 0.00 0.00 3.18
1013 1017 4.957327 TGGCAAAAATGATGATGATGAGGA 59.043 37.500 0.00 0.00 0.00 3.71
1018 1022 7.788026 ACAATAGTGGCAAAAATGATGATGAT 58.212 30.769 0.00 0.00 0.00 2.45
1021 1025 6.127647 ACGACAATAGTGGCAAAAATGATGAT 60.128 34.615 0.00 0.00 30.49 2.45
1039 1043 0.696501 AAGGGGTAAGCCACGACAAT 59.303 50.000 0.00 0.00 44.83 2.71
1065 1069 1.216710 CCACTCTTCCTCGGCAGAC 59.783 63.158 0.00 0.00 0.00 3.51
1068 1072 1.112113 GATACCACTCTTCCTCGGCA 58.888 55.000 0.00 0.00 0.00 5.69
1092 1096 1.540367 TTCATTGTCGGGGTCCCCT 60.540 57.895 25.34 2.04 42.67 4.79
1116 1120 3.160585 CCACCAAGCTCCTGGACA 58.839 61.111 11.52 0.00 38.96 4.02
1218 1222 1.478916 TCGAGGCGATATTTCACACCA 59.521 47.619 0.00 0.00 0.00 4.17
1254 1258 3.666253 CCGGGTTGGCCGTTGTTC 61.666 66.667 0.00 0.00 34.97 3.18
1339 1343 1.944709 GTTGGTTGCCACTTAGTTCGT 59.055 47.619 0.00 0.00 30.78 3.85
1458 1465 2.233676 CTCCCCATTTTGTAGGCCAAAC 59.766 50.000 5.01 2.84 42.63 2.93
1517 1526 2.583024 TTGGAGATGCAACATGACCA 57.417 45.000 0.00 0.00 0.00 4.02
1578 1587 4.374508 CGTCAAATAACGCGCAACAAAAAT 60.375 37.500 5.73 0.00 35.64 1.82
1593 1602 0.179111 CTCGGCAGCCTCGTCAAATA 60.179 55.000 10.54 0.00 0.00 1.40
1599 1608 2.755876 TGATCTCGGCAGCCTCGT 60.756 61.111 10.54 0.00 0.00 4.18
1600 1609 1.448119 TAGTGATCTCGGCAGCCTCG 61.448 60.000 10.54 0.00 0.00 4.63
1612 1621 9.405587 GATAGTATCAAGAAAGTGCTAGTGATC 57.594 37.037 5.21 0.00 0.00 2.92
1641 1650 1.599518 GTGTGGGGAACATGCACGA 60.600 57.895 0.00 0.00 41.97 4.35
1646 1655 3.533606 TTTTTGTGTGTGGGGAACATG 57.466 42.857 0.00 0.00 41.97 3.21
1732 1742 5.525012 TCTGAGTGTAGTTGCATTGCATATC 59.475 40.000 12.95 6.53 38.76 1.63
1768 1779 9.387257 GATTTCATTAGAAAATTTGGATTGGCT 57.613 29.630 0.00 0.00 46.06 4.75
1824 1835 7.648510 GGTATTGTAGTTCTTGATAGTCCTTCG 59.351 40.741 0.00 0.00 0.00 3.79
1929 1944 5.877564 TGCATCGTTTGACCATGTTTATAGA 59.122 36.000 0.00 0.00 0.00 1.98
1982 1997 7.545615 ACACTCCATTTGTCTTTGAAAAGAAAC 59.454 33.333 7.05 0.00 45.77 2.78
1983 1998 7.610865 ACACTCCATTTGTCTTTGAAAAGAAA 58.389 30.769 7.05 0.00 45.77 2.52
2047 2062 6.486941 AGGGAGCTTAGTGGTATAGTAGATC 58.513 44.000 0.00 0.00 0.00 2.75
2053 2068 4.345854 CCCTAGGGAGCTTAGTGGTATAG 58.654 52.174 24.99 0.00 37.50 1.31
2126 2141 6.877236 AGAAATTGTTGACTTGGTCACAATT 58.123 32.000 21.03 21.03 44.89 2.32
2130 2145 5.499139 TGAGAAATTGTTGACTTGGTCAC 57.501 39.130 0.00 0.00 42.60 3.67
2132 2147 5.403466 GCATTGAGAAATTGTTGACTTGGTC 59.597 40.000 0.00 0.00 0.00 4.02
2220 2235 7.873505 GTGACTAAGTCATAAACTGAAGACCTT 59.126 37.037 0.00 0.00 44.63 3.50
2229 2244 9.003658 CAAAATCAGGTGACTAAGTCATAAACT 57.996 33.333 0.00 0.00 44.63 2.66
2235 2250 5.163248 TGGTCAAAATCAGGTGACTAAGTCA 60.163 40.000 4.02 0.00 43.06 3.41
2236 2251 5.305585 TGGTCAAAATCAGGTGACTAAGTC 58.694 41.667 4.02 0.00 43.06 3.01
2257 2272 6.264067 GGATCCTTGAGAAATTATTGACCTGG 59.736 42.308 3.84 0.00 0.00 4.45
2259 2274 7.218314 AGGATCCTTGAGAAATTATTGACCT 57.782 36.000 9.02 0.00 0.00 3.85
2305 2320 8.938883 AGAGCTTCAAAATTAGGGAGTATGATA 58.061 33.333 0.00 0.00 0.00 2.15
2307 2322 7.200434 AGAGCTTCAAAATTAGGGAGTATGA 57.800 36.000 0.00 0.00 0.00 2.15
2309 2324 7.866870 AGAAGAGCTTCAAAATTAGGGAGTAT 58.133 34.615 12.32 0.00 41.84 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.