Multiple sequence alignment - TraesCS3B01G414600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G414600 chr3B 100.000 4322 0 0 1 4322 651376181 651371860 0.000000e+00 7982.0
1 TraesCS3B01G414600 chr3B 98.649 296 4 0 2100 2395 662857186 662856891 3.830000e-145 525.0
2 TraesCS3B01G414600 chr3B 97.690 303 6 1 2099 2401 657541662 657541963 1.780000e-143 520.0
3 TraesCS3B01G414600 chr3B 86.667 75 7 1 1564 1635 651374525 651374451 3.580000e-11 80.5
4 TraesCS3B01G414600 chr3B 86.667 75 7 1 1657 1731 651374618 651374547 3.580000e-11 80.5
5 TraesCS3B01G414600 chr3D 90.370 1298 75 24 2392 3684 488386794 488385542 0.000000e+00 1659.0
6 TraesCS3B01G414600 chr3D 92.424 594 34 4 3740 4322 488385367 488384774 0.000000e+00 837.0
7 TraesCS3B01G414600 chr3D 86.856 738 45 12 1383 2101 488387498 488386794 0.000000e+00 778.0
8 TraesCS3B01G414600 chr3D 89.231 455 40 7 917 1366 488388135 488387685 1.050000e-155 560.0
9 TraesCS3B01G414600 chr3A 87.521 1210 102 28 922 2101 632030916 632029726 0.000000e+00 1352.0
10 TraesCS3B01G414600 chr3A 94.614 854 43 3 2394 3246 632029727 632028876 0.000000e+00 1319.0
11 TraesCS3B01G414600 chr3A 95.701 628 20 3 3696 4322 632028157 632027536 0.000000e+00 1003.0
12 TraesCS3B01G414600 chr3A 91.502 506 30 9 3198 3697 632028710 632028212 0.000000e+00 684.0
13 TraesCS3B01G414600 chr3A 91.781 73 3 1 1568 1637 632030178 632030106 9.890000e-17 99.0
14 TraesCS3B01G414600 chr2D 86.469 776 95 7 1 774 148286882 148286115 0.000000e+00 843.0
15 TraesCS3B01G414600 chr2D 86.352 762 98 6 16 774 628787591 628786833 0.000000e+00 826.0
16 TraesCS3B01G414600 chr2D 100.000 30 0 0 1172 1201 476278067 476278038 6.040000e-04 56.5
17 TraesCS3B01G414600 chr7B 85.861 778 102 8 1 774 159620404 159619631 0.000000e+00 821.0
18 TraesCS3B01G414600 chr7B 98.333 300 5 0 2096 2395 569765652 569765951 1.060000e-145 527.0
19 TraesCS3B01G414600 chr7B 98.649 296 4 0 2100 2395 121051701 121051996 3.830000e-145 525.0
20 TraesCS3B01G414600 chr4B 82.861 776 104 8 1 774 602988947 602989695 0.000000e+00 669.0
21 TraesCS3B01G414600 chr4B 97.394 307 6 2 2096 2401 574509709 574510014 4.950000e-144 521.0
22 TraesCS3B01G414600 chr4B 87.879 264 27 2 515 774 668800550 668800288 5.430000e-79 305.0
23 TraesCS3B01G414600 chr4B 87.500 264 28 2 515 774 668428144 668427882 2.530000e-77 300.0
24 TraesCS3B01G414600 chr6D 87.810 484 58 1 1 483 158989338 158989821 2.260000e-157 566.0
25 TraesCS3B01G414600 chr6D 86.957 276 27 7 499 774 159008776 159009042 7.020000e-78 302.0
26 TraesCS3B01G414600 chr5B 98.333 300 5 0 2096 2395 571656757 571657056 1.060000e-145 527.0
27 TraesCS3B01G414600 chr5B 98.649 296 4 0 2100 2395 627033286 627033581 3.830000e-145 525.0
28 TraesCS3B01G414600 chr6B 98.649 296 4 0 2100 2395 538067742 538068037 3.830000e-145 525.0
29 TraesCS3B01G414600 chr1B 98.316 297 5 0 2099 2395 622759458 622759162 4.950000e-144 521.0
30 TraesCS3B01G414600 chrUn 87.500 264 28 2 515 774 29314966 29315228 2.530000e-77 300.0
31 TraesCS3B01G414600 chr5A 84.848 264 28 5 515 774 707995687 707995432 5.550000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G414600 chr3B 651371860 651376181 4321 True 2714.333333 7982 91.111333 1 4322 3 chr3B.!!$R2 4321
1 TraesCS3B01G414600 chr3D 488384774 488388135 3361 True 958.500000 1659 89.720250 917 4322 4 chr3D.!!$R1 3405
2 TraesCS3B01G414600 chr3A 632027536 632030916 3380 True 891.400000 1352 92.223800 922 4322 5 chr3A.!!$R1 3400
3 TraesCS3B01G414600 chr2D 148286115 148286882 767 True 843.000000 843 86.469000 1 774 1 chr2D.!!$R1 773
4 TraesCS3B01G414600 chr2D 628786833 628787591 758 True 826.000000 826 86.352000 16 774 1 chr2D.!!$R3 758
5 TraesCS3B01G414600 chr7B 159619631 159620404 773 True 821.000000 821 85.861000 1 774 1 chr7B.!!$R1 773
6 TraesCS3B01G414600 chr4B 602988947 602989695 748 False 669.000000 669 82.861000 1 774 1 chr4B.!!$F2 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 892 0.031178 GCCCTGTGTTTGCACTTGAG 59.969 55.0 0.00 0.0 45.44 3.02 F
2238 2448 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.0 13.12 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2469 0.034767 AGAGATGTGGGGTGTGCATG 60.035 55.0 0.0 0.0 0.0 4.06 R
4050 4612 0.107945 CCTTCTCCTTCCTGCCTTCG 60.108 60.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.243704 GGAGACATCCTCTACTGTCATGC 60.244 52.174 5.58 0.00 43.35 4.06
61 62 2.833943 ACATCCTCTACTGTCATGCACA 59.166 45.455 0.00 0.00 0.00 4.57
70 71 3.603532 ACTGTCATGCACAATGTCTAGG 58.396 45.455 0.00 0.00 37.56 3.02
81 82 3.245229 ACAATGTCTAGGTGCATTTGGGA 60.245 43.478 0.00 0.00 33.55 4.37
85 86 4.037222 TGTCTAGGTGCATTTGGGATCTA 58.963 43.478 0.00 0.00 27.89 1.98
107 108 3.090037 TCCGAGGAACCTCTAGTTTCTG 58.910 50.000 17.18 1.26 44.96 3.02
144 145 3.498927 GGAGACGGACACGAAAATCTA 57.501 47.619 0.00 0.00 44.60 1.98
253 254 6.927381 GCAAAGCAATATATGAAGGCATCTTT 59.073 34.615 0.00 0.00 35.94 2.52
255 256 6.492007 AGCAATATATGAAGGCATCTTTCG 57.508 37.500 0.00 0.00 35.94 3.46
256 257 6.233434 AGCAATATATGAAGGCATCTTTCGA 58.767 36.000 0.00 0.00 35.94 3.71
270 271 5.009010 GCATCTTTCGAAACCCACATCATAT 59.991 40.000 6.47 0.00 0.00 1.78
311 312 5.520288 TCATAATTAAGTGAGCTCGAGCAAC 59.480 40.000 36.87 31.30 45.16 4.17
317 318 2.094957 AGTGAGCTCGAGCAACTTACTC 60.095 50.000 36.87 23.86 45.16 2.59
324 325 1.454201 GAGCAACTTACTCCAAGGGC 58.546 55.000 0.00 0.00 38.70 5.19
331 332 1.211457 CTTACTCCAAGGGCAGAGCAT 59.789 52.381 0.00 0.00 33.18 3.79
340 341 3.503363 GCAGAGCATGTGACCGCC 61.503 66.667 0.00 0.00 0.00 6.13
343 344 4.408821 GAGCATGTGACCGCCCCA 62.409 66.667 0.00 0.00 0.00 4.96
396 398 2.499685 CCGCCCGGTCTCCTAAAG 59.500 66.667 0.00 0.00 0.00 1.85
402 404 2.742204 GCCCGGTCTCCTAAAGATCAAC 60.742 54.545 0.00 0.00 34.49 3.18
415 417 1.003580 AGATCAACGTGGATGGTGCTT 59.996 47.619 10.99 0.00 0.00 3.91
446 448 0.704076 ATACATGGGGGTGCAGTTGT 59.296 50.000 0.00 0.00 0.00 3.32
447 449 0.251121 TACATGGGGGTGCAGTTGTG 60.251 55.000 0.00 0.00 0.00 3.33
450 452 4.912395 GGGGGTGCAGTTGTGGCA 62.912 66.667 0.00 0.00 39.32 4.92
483 485 2.235898 TGAAAATGGCACCTATTTGGGC 59.764 45.455 0.00 0.00 41.11 5.36
486 488 0.466189 ATGGCACCTATTTGGGCTCG 60.466 55.000 0.00 0.00 41.11 5.03
488 490 0.679960 GGCACCTATTTGGGCTCGTT 60.680 55.000 0.00 0.00 41.11 3.85
494 496 1.133025 CTATTTGGGCTCGTTTGCAGG 59.867 52.381 0.00 0.00 34.04 4.85
496 498 2.632602 TTTGGGCTCGTTTGCAGGGA 62.633 55.000 0.00 0.00 34.04 4.20
564 566 1.522580 GGAAGCTCTTGCCCTAGCG 60.523 63.158 0.00 0.00 43.63 4.26
579 581 4.739137 GCCCTAGCGGATGATCTTGATATC 60.739 50.000 0.00 0.00 0.00 1.63
583 585 2.935201 GCGGATGATCTTGATATCCAGC 59.065 50.000 9.11 8.93 40.28 4.85
600 602 4.815533 CCAGCATATGGTAGTAGCATCT 57.184 45.455 17.80 6.27 44.91 2.90
603 605 5.105023 CCAGCATATGGTAGTAGCATCTGAT 60.105 44.000 24.11 18.16 44.91 2.90
608 610 2.771372 TGGTAGTAGCATCTGATTGCCA 59.229 45.455 0.00 1.41 43.83 4.92
611 613 2.928334 AGTAGCATCTGATTGCCAAGG 58.072 47.619 7.97 0.00 43.83 3.61
633 635 4.753107 GGAGTGGTAAAAGACATCAACGAA 59.247 41.667 0.00 0.00 0.00 3.85
669 671 2.936919 ATGCGGCTATCATCCAAGAA 57.063 45.000 0.00 0.00 0.00 2.52
672 674 3.554934 TGCGGCTATCATCCAAGAAATT 58.445 40.909 0.00 0.00 0.00 1.82
674 676 3.316308 GCGGCTATCATCCAAGAAATTGT 59.684 43.478 0.00 0.00 0.00 2.71
675 677 4.515191 GCGGCTATCATCCAAGAAATTGTA 59.485 41.667 0.00 0.00 0.00 2.41
684 686 5.142061 TCCAAGAAATTGTAGCACGTAGA 57.858 39.130 0.00 0.00 0.00 2.59
685 687 5.730550 TCCAAGAAATTGTAGCACGTAGAT 58.269 37.500 0.00 0.00 0.00 1.98
686 688 5.810587 TCCAAGAAATTGTAGCACGTAGATC 59.189 40.000 0.00 0.00 0.00 2.75
726 734 6.510317 GCTCTTTTATTCATGAGCGTAGGAAC 60.510 42.308 0.00 0.00 41.67 3.62
751 759 9.466497 ACTTTAATTTTGAGGCTCATAATCTCA 57.534 29.630 26.31 15.50 35.95 3.27
756 764 7.943079 TTTTGAGGCTCATAATCTCATCAAA 57.057 32.000 19.50 8.69 37.38 2.69
771 779 9.715121 AATCTCATCAAATTTGCTTGTAATTGT 57.285 25.926 13.54 0.00 0.00 2.71
773 781 9.844790 TCTCATCAAATTTGCTTGTAATTGTAG 57.155 29.630 13.54 5.58 0.00 2.74
774 782 8.464770 TCATCAAATTTGCTTGTAATTGTAGC 57.535 30.769 13.54 0.00 35.50 3.58
775 783 8.087136 TCATCAAATTTGCTTGTAATTGTAGCA 58.913 29.630 13.54 6.81 42.71 3.49
776 784 7.636259 TCAAATTTGCTTGTAATTGTAGCAC 57.364 32.000 13.54 0.00 43.96 4.40
777 785 6.644592 TCAAATTTGCTTGTAATTGTAGCACC 59.355 34.615 13.54 0.00 43.96 5.01
778 786 5.982890 ATTTGCTTGTAATTGTAGCACCT 57.017 34.783 9.58 0.50 43.96 4.00
779 787 7.461182 AATTTGCTTGTAATTGTAGCACCTA 57.539 32.000 9.58 1.92 43.96 3.08
780 788 7.645058 ATTTGCTTGTAATTGTAGCACCTAT 57.355 32.000 9.58 3.63 43.96 2.57
781 789 6.435430 TTGCTTGTAATTGTAGCACCTATG 57.565 37.500 9.58 0.00 43.96 2.23
782 790 5.739959 TGCTTGTAATTGTAGCACCTATGA 58.260 37.500 6.81 0.00 39.79 2.15
783 791 6.176896 TGCTTGTAATTGTAGCACCTATGAA 58.823 36.000 6.81 0.00 39.79 2.57
784 792 6.093495 TGCTTGTAATTGTAGCACCTATGAAC 59.907 38.462 6.81 0.00 39.79 3.18
785 793 6.093495 GCTTGTAATTGTAGCACCTATGAACA 59.907 38.462 0.00 0.00 35.05 3.18
786 794 7.201732 GCTTGTAATTGTAGCACCTATGAACAT 60.202 37.037 0.00 0.00 35.05 2.71
787 795 8.574251 TTGTAATTGTAGCACCTATGAACATT 57.426 30.769 0.00 0.00 0.00 2.71
788 796 7.984391 TGTAATTGTAGCACCTATGAACATTG 58.016 34.615 0.00 0.00 0.00 2.82
789 797 7.609918 TGTAATTGTAGCACCTATGAACATTGT 59.390 33.333 0.00 0.00 0.00 2.71
790 798 7.466746 AATTGTAGCACCTATGAACATTGTT 57.533 32.000 0.63 0.63 0.00 2.83
791 799 8.574251 AATTGTAGCACCTATGAACATTGTTA 57.426 30.769 1.15 0.00 0.00 2.41
792 800 6.978343 TGTAGCACCTATGAACATTGTTAC 57.022 37.500 1.15 0.00 0.00 2.50
793 801 5.878116 TGTAGCACCTATGAACATTGTTACC 59.122 40.000 1.15 0.00 0.00 2.85
794 802 4.917385 AGCACCTATGAACATTGTTACCA 58.083 39.130 1.15 0.00 0.00 3.25
795 803 5.321102 AGCACCTATGAACATTGTTACCAA 58.679 37.500 1.15 0.00 34.45 3.67
796 804 5.951747 AGCACCTATGAACATTGTTACCAAT 59.048 36.000 1.15 0.00 42.03 3.16
797 805 6.095440 AGCACCTATGAACATTGTTACCAATC 59.905 38.462 1.15 0.00 39.28 2.67
798 806 6.127758 GCACCTATGAACATTGTTACCAATCA 60.128 38.462 1.15 0.00 39.28 2.57
799 807 7.576666 GCACCTATGAACATTGTTACCAATCAA 60.577 37.037 1.15 0.00 39.28 2.57
800 808 8.469200 CACCTATGAACATTGTTACCAATCAAT 58.531 33.333 1.15 0.00 39.28 2.57
801 809 9.693739 ACCTATGAACATTGTTACCAATCAATA 57.306 29.630 1.15 0.00 39.28 1.90
806 814 9.689976 TGAACATTGTTACCAATCAATAAAGTG 57.310 29.630 1.15 0.00 39.28 3.16
807 815 9.139174 GAACATTGTTACCAATCAATAAAGTGG 57.861 33.333 1.15 0.00 39.28 4.00
808 816 7.610865 ACATTGTTACCAATCAATAAAGTGGG 58.389 34.615 0.00 0.00 39.28 4.61
809 817 5.652994 TGTTACCAATCAATAAAGTGGGC 57.347 39.130 0.00 0.00 35.32 5.36
810 818 4.156922 TGTTACCAATCAATAAAGTGGGCG 59.843 41.667 0.00 0.00 35.32 6.13
811 819 3.080300 ACCAATCAATAAAGTGGGCGA 57.920 42.857 0.00 0.00 35.32 5.54
812 820 3.016736 ACCAATCAATAAAGTGGGCGAG 58.983 45.455 0.00 0.00 35.32 5.03
813 821 3.278574 CCAATCAATAAAGTGGGCGAGA 58.721 45.455 0.00 0.00 0.00 4.04
814 822 3.885297 CCAATCAATAAAGTGGGCGAGAT 59.115 43.478 0.00 0.00 0.00 2.75
815 823 4.339247 CCAATCAATAAAGTGGGCGAGATT 59.661 41.667 0.00 0.00 0.00 2.40
816 824 5.163519 CCAATCAATAAAGTGGGCGAGATTT 60.164 40.000 0.00 0.00 0.00 2.17
817 825 5.757850 ATCAATAAAGTGGGCGAGATTTC 57.242 39.130 0.00 0.00 0.00 2.17
818 826 4.843728 TCAATAAAGTGGGCGAGATTTCT 58.156 39.130 0.00 0.00 0.00 2.52
819 827 4.876107 TCAATAAAGTGGGCGAGATTTCTC 59.124 41.667 0.00 0.00 39.55 2.87
820 828 2.859165 AAAGTGGGCGAGATTTCTCA 57.141 45.000 8.23 0.00 43.00 3.27
821 829 2.859165 AAGTGGGCGAGATTTCTCAA 57.141 45.000 8.23 0.00 43.00 3.02
822 830 2.859165 AGTGGGCGAGATTTCTCAAA 57.141 45.000 8.23 0.00 43.00 2.69
823 831 3.140325 AGTGGGCGAGATTTCTCAAAA 57.860 42.857 8.23 0.00 43.00 2.44
824 832 3.486383 AGTGGGCGAGATTTCTCAAAAA 58.514 40.909 8.23 0.00 43.00 1.94
846 854 3.923017 AAAAGGGTCATTCGCTCTTTG 57.077 42.857 0.00 0.00 38.40 2.77
847 855 2.568623 AAGGGTCATTCGCTCTTTGT 57.431 45.000 0.00 0.00 38.40 2.83
848 856 2.568623 AGGGTCATTCGCTCTTTGTT 57.431 45.000 0.00 0.00 34.08 2.83
849 857 2.863809 AGGGTCATTCGCTCTTTGTTT 58.136 42.857 0.00 0.00 34.08 2.83
850 858 2.814336 AGGGTCATTCGCTCTTTGTTTC 59.186 45.455 0.00 0.00 34.08 2.78
851 859 2.814336 GGGTCATTCGCTCTTTGTTTCT 59.186 45.455 0.00 0.00 0.00 2.52
852 860 3.253432 GGGTCATTCGCTCTTTGTTTCTT 59.747 43.478 0.00 0.00 0.00 2.52
853 861 4.261614 GGGTCATTCGCTCTTTGTTTCTTT 60.262 41.667 0.00 0.00 0.00 2.52
854 862 5.281727 GGTCATTCGCTCTTTGTTTCTTTT 58.718 37.500 0.00 0.00 0.00 2.27
855 863 6.435428 GGTCATTCGCTCTTTGTTTCTTTTA 58.565 36.000 0.00 0.00 0.00 1.52
856 864 6.578919 GGTCATTCGCTCTTTGTTTCTTTTAG 59.421 38.462 0.00 0.00 0.00 1.85
857 865 6.578919 GTCATTCGCTCTTTGTTTCTTTTAGG 59.421 38.462 0.00 0.00 0.00 2.69
858 866 4.483476 TCGCTCTTTGTTTCTTTTAGGC 57.517 40.909 0.00 0.00 0.00 3.93
859 867 3.880490 TCGCTCTTTGTTTCTTTTAGGCA 59.120 39.130 0.00 0.00 0.00 4.75
860 868 4.336993 TCGCTCTTTGTTTCTTTTAGGCAA 59.663 37.500 0.00 0.00 0.00 4.52
861 869 5.040635 CGCTCTTTGTTTCTTTTAGGCAAA 58.959 37.500 0.00 0.00 0.00 3.68
862 870 5.691754 CGCTCTTTGTTTCTTTTAGGCAAAT 59.308 36.000 0.00 0.00 0.00 2.32
863 871 6.200854 CGCTCTTTGTTTCTTTTAGGCAAATT 59.799 34.615 0.00 0.00 0.00 1.82
864 872 7.254421 CGCTCTTTGTTTCTTTTAGGCAAATTT 60.254 33.333 0.00 0.00 0.00 1.82
865 873 7.852454 GCTCTTTGTTTCTTTTAGGCAAATTTG 59.148 33.333 14.03 14.03 0.00 2.32
878 886 2.286872 CAAATTTGCCCTGTGTTTGCA 58.713 42.857 5.01 0.00 0.00 4.08
879 887 1.952193 AATTTGCCCTGTGTTTGCAC 58.048 45.000 0.00 0.00 45.44 4.57
880 888 1.122227 ATTTGCCCTGTGTTTGCACT 58.878 45.000 0.00 0.00 45.44 4.40
881 889 0.901124 TTTGCCCTGTGTTTGCACTT 59.099 45.000 0.00 0.00 45.44 3.16
882 890 0.175302 TTGCCCTGTGTTTGCACTTG 59.825 50.000 0.00 0.00 45.44 3.16
883 891 0.682532 TGCCCTGTGTTTGCACTTGA 60.683 50.000 0.00 0.00 45.44 3.02
884 892 0.031178 GCCCTGTGTTTGCACTTGAG 59.969 55.000 0.00 0.00 45.44 3.02
885 893 0.670162 CCCTGTGTTTGCACTTGAGG 59.330 55.000 0.00 0.00 45.44 3.86
886 894 0.031178 CCTGTGTTTGCACTTGAGGC 59.969 55.000 0.00 0.00 45.44 4.70
887 895 0.317269 CTGTGTTTGCACTTGAGGCG 60.317 55.000 0.00 0.00 45.44 5.52
888 896 0.746204 TGTGTTTGCACTTGAGGCGA 60.746 50.000 0.00 0.00 45.44 5.54
889 897 0.317020 GTGTTTGCACTTGAGGCGAC 60.317 55.000 0.00 0.00 42.13 5.19
890 898 0.746204 TGTTTGCACTTGAGGCGACA 60.746 50.000 0.00 0.00 0.00 4.35
891 899 0.593128 GTTTGCACTTGAGGCGACAT 59.407 50.000 0.00 0.00 0.00 3.06
892 900 1.001378 GTTTGCACTTGAGGCGACATT 60.001 47.619 0.00 0.00 0.00 2.71
893 901 0.592637 TTGCACTTGAGGCGACATTG 59.407 50.000 0.00 0.00 0.00 2.82
894 902 1.154150 GCACTTGAGGCGACATTGC 60.154 57.895 0.00 0.00 0.00 3.56
902 910 3.370231 GCGACATTGCCCCCGTTT 61.370 61.111 0.00 0.00 0.00 3.60
903 911 2.041686 GCGACATTGCCCCCGTTTA 61.042 57.895 0.00 0.00 0.00 2.01
904 912 1.988834 GCGACATTGCCCCCGTTTAG 61.989 60.000 0.00 0.00 0.00 1.85
905 913 1.807226 GACATTGCCCCCGTTTAGC 59.193 57.895 0.00 0.00 0.00 3.09
906 914 1.663379 GACATTGCCCCCGTTTAGCC 61.663 60.000 0.00 0.00 0.00 3.93
907 915 2.043349 ATTGCCCCCGTTTAGCCC 60.043 61.111 0.00 0.00 0.00 5.19
908 916 2.925117 ATTGCCCCCGTTTAGCCCA 61.925 57.895 0.00 0.00 0.00 5.36
909 917 2.236959 ATTGCCCCCGTTTAGCCCAT 62.237 55.000 0.00 0.00 0.00 4.00
910 918 2.518587 GCCCCCGTTTAGCCCATC 60.519 66.667 0.00 0.00 0.00 3.51
911 919 2.194868 CCCCCGTTTAGCCCATCC 59.805 66.667 0.00 0.00 0.00 3.51
912 920 2.685534 CCCCCGTTTAGCCCATCCA 61.686 63.158 0.00 0.00 0.00 3.41
913 921 1.304952 CCCCGTTTAGCCCATCCAA 59.695 57.895 0.00 0.00 0.00 3.53
914 922 1.035385 CCCCGTTTAGCCCATCCAAC 61.035 60.000 0.00 0.00 0.00 3.77
915 923 1.373590 CCCGTTTAGCCCATCCAACG 61.374 60.000 0.00 0.00 41.31 4.10
927 935 1.676006 CATCCAACGGTAAAGCCCATC 59.324 52.381 0.00 0.00 0.00 3.51
938 946 3.443045 GCCCATCAACAGCCCACG 61.443 66.667 0.00 0.00 0.00 4.94
989 997 5.362430 GGACAAAATATAATGGCTGTTCCCA 59.638 40.000 0.00 0.00 39.65 4.37
1025 1034 5.350504 TCTTTTTGTTGCCAATTTCCTCA 57.649 34.783 0.00 0.00 0.00 3.86
1026 1035 5.738909 TCTTTTTGTTGCCAATTTCCTCAA 58.261 33.333 0.00 0.00 0.00 3.02
1027 1036 5.816777 TCTTTTTGTTGCCAATTTCCTCAAG 59.183 36.000 0.00 0.00 0.00 3.02
1030 1039 1.620323 GTTGCCAATTTCCTCAAGGCT 59.380 47.619 0.00 0.00 45.42 4.58
1031 1040 1.259609 TGCCAATTTCCTCAAGGCTG 58.740 50.000 0.00 0.00 45.42 4.85
1032 1041 1.260544 GCCAATTTCCTCAAGGCTGT 58.739 50.000 0.00 0.00 42.01 4.40
1033 1042 1.203287 GCCAATTTCCTCAAGGCTGTC 59.797 52.381 0.00 0.00 42.01 3.51
1034 1043 2.800250 CCAATTTCCTCAAGGCTGTCT 58.200 47.619 0.00 0.00 34.44 3.41
1063 1076 3.157949 CCCCTTCCTCTCCCGAGC 61.158 72.222 0.00 0.00 35.90 5.03
1091 1104 1.152819 TACATCTCTACCGCCGGCT 60.153 57.895 26.68 9.55 0.00 5.52
1162 1176 2.537560 CGCCATCGCCATTCCTGTC 61.538 63.158 0.00 0.00 0.00 3.51
1166 1180 0.816825 CATCGCCATTCCTGTCCCTG 60.817 60.000 0.00 0.00 0.00 4.45
1214 1228 0.801836 GTCCGCGATTTTGGGCATTG 60.802 55.000 8.23 0.00 0.00 2.82
1243 1257 6.140786 GGTTTTCAGGTACGATCTTGTTTTC 58.859 40.000 0.00 0.00 0.00 2.29
1247 1261 4.022589 TCAGGTACGATCTTGTTTTCGTCT 60.023 41.667 0.78 0.00 44.72 4.18
1248 1262 4.090066 CAGGTACGATCTTGTTTTCGTCTG 59.910 45.833 0.78 1.22 44.72 3.51
1334 1348 1.543802 CATCTAGATCCGCCTCTGGTC 59.456 57.143 1.03 0.00 0.00 4.02
1336 1350 0.535328 CTAGATCCGCCTCTGGTCGA 60.535 60.000 0.00 0.00 0.00 4.20
1338 1352 2.043852 ATCCGCCTCTGGTCGAGT 60.044 61.111 0.00 0.00 38.11 4.18
1339 1353 2.065906 GATCCGCCTCTGGTCGAGTC 62.066 65.000 0.00 0.00 38.11 3.36
1343 1357 1.806568 GCCTCTGGTCGAGTCTCTG 59.193 63.158 0.00 0.00 38.11 3.35
1487 1675 2.143122 TGTGTTCATCTTCGCTGGAAC 58.857 47.619 0.00 0.00 39.93 3.62
1523 1711 2.360165 CCAAATAACTCTGATGCCCAGC 59.640 50.000 0.00 0.00 42.62 4.85
1533 1721 3.054139 TCTGATGCCCAGCTACTCAAATT 60.054 43.478 0.00 0.00 42.62 1.82
1623 1814 7.310671 GGAAAGCTGGAGAAAATTTAGGGATTT 60.311 37.037 0.00 0.00 0.00 2.17
1648 1839 6.711194 TGTCCGTTATCAAAGTGTCCATTAAA 59.289 34.615 0.00 0.00 0.00 1.52
1649 1840 7.392113 TGTCCGTTATCAAAGTGTCCATTAAAT 59.608 33.333 0.00 0.00 0.00 1.40
1650 1841 8.885722 GTCCGTTATCAAAGTGTCCATTAAATA 58.114 33.333 0.00 0.00 0.00 1.40
1660 1851 2.488153 GTCCATTAAATATCGCTGGCCC 59.512 50.000 0.00 0.00 0.00 5.80
1665 1856 4.846779 TTAAATATCGCTGGCCCAATTC 57.153 40.909 0.00 0.00 0.00 2.17
1676 1867 0.817013 GCCCAATTCGCAAATCTCCA 59.183 50.000 0.00 0.00 0.00 3.86
1694 1885 4.962362 TCTCCAATACCAATGCACTCTAGA 59.038 41.667 0.00 0.00 0.00 2.43
1736 1936 6.118170 AGGGATTTGTCAGTCATCACTAATG 58.882 40.000 0.00 0.00 36.65 1.90
1800 2001 3.689872 AGGTAGATGCCCAGTTCTCTA 57.310 47.619 0.00 0.00 0.00 2.43
1832 2033 7.188468 TGCTTAAAATTTTGTCATTGCCTTC 57.812 32.000 13.76 0.00 0.00 3.46
1924 2125 6.295249 TGATGTTGTGTCAATTAACTCCTCA 58.705 36.000 0.00 0.00 0.00 3.86
1925 2126 6.942005 TGATGTTGTGTCAATTAACTCCTCAT 59.058 34.615 0.00 0.00 0.00 2.90
1942 2143 5.129634 TCCTCATAACTGTTGAACTTGCAA 58.870 37.500 2.69 0.00 0.00 4.08
1951 2152 7.935338 ACTGTTGAACTTGCAAATCAATTAG 57.065 32.000 22.79 22.90 35.70 1.73
1952 2153 7.491682 ACTGTTGAACTTGCAAATCAATTAGT 58.508 30.769 22.79 23.32 35.70 2.24
1953 2154 8.629158 ACTGTTGAACTTGCAAATCAATTAGTA 58.371 29.630 25.60 14.51 35.70 1.82
2108 2318 2.682155 CAGTCTTTGCTACTCCCTCC 57.318 55.000 0.00 0.00 0.00 4.30
2109 2319 1.134965 CAGTCTTTGCTACTCCCTCCG 60.135 57.143 0.00 0.00 0.00 4.63
2110 2320 0.896226 GTCTTTGCTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
2111 2321 1.135053 GTCTTTGCTACTCCCTCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
2112 2322 1.187087 CTTTGCTACTCCCTCCGTCT 58.813 55.000 0.00 0.00 0.00 4.18
2113 2323 2.025605 TCTTTGCTACTCCCTCCGTCTA 60.026 50.000 0.00 0.00 0.00 2.59
2114 2324 2.054232 TTGCTACTCCCTCCGTCTAG 57.946 55.000 0.00 0.00 0.00 2.43
2115 2325 0.183014 TGCTACTCCCTCCGTCTAGG 59.817 60.000 0.00 0.00 42.97 3.02
2116 2326 0.183252 GCTACTCCCTCCGTCTAGGT 59.817 60.000 0.00 0.00 41.99 3.08
2117 2327 1.970092 CTACTCCCTCCGTCTAGGTG 58.030 60.000 0.00 0.00 41.99 4.00
2118 2328 1.489649 CTACTCCCTCCGTCTAGGTGA 59.510 57.143 0.00 0.00 41.99 4.02
2119 2329 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
2120 2330 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
2121 2331 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
2122 2332 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
2123 2333 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
2124 2334 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
2125 2335 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
2126 2336 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
2127 2337 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
2128 2338 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
2130 2340 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
2131 2341 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
2132 2342 6.017770 CCGTCTAGGTGAGTAAGTCATCTTAG 60.018 46.154 0.00 0.00 45.09 2.18
2133 2343 6.017770 CGTCTAGGTGAGTAAGTCATCTTAGG 60.018 46.154 0.00 0.00 45.09 2.69
2134 2344 6.829811 GTCTAGGTGAGTAAGTCATCTTAGGT 59.170 42.308 0.00 0.00 45.09 3.08
2135 2345 7.339976 GTCTAGGTGAGTAAGTCATCTTAGGTT 59.660 40.741 0.00 0.00 45.09 3.50
2136 2346 6.287589 AGGTGAGTAAGTCATCTTAGGTTG 57.712 41.667 0.00 0.00 45.09 3.77
2137 2347 5.780793 AGGTGAGTAAGTCATCTTAGGTTGT 59.219 40.000 0.00 0.00 45.09 3.32
2138 2348 5.869888 GGTGAGTAAGTCATCTTAGGTTGTG 59.130 44.000 0.00 0.00 37.56 3.33
2139 2349 5.348997 GTGAGTAAGTCATCTTAGGTTGTGC 59.651 44.000 0.00 0.00 37.56 4.57
2140 2350 5.011635 TGAGTAAGTCATCTTAGGTTGTGCA 59.988 40.000 0.00 0.00 36.90 4.57
2141 2351 5.238583 AGTAAGTCATCTTAGGTTGTGCAC 58.761 41.667 10.75 10.75 36.90 4.57
2142 2352 4.392138 GTAAGTCATCTTAGGTTGTGCACC 59.608 45.833 15.69 0.00 39.22 5.01
2143 2353 4.858007 TAAGTCATCTTAGGTTGTGCACCG 60.858 45.833 15.69 0.00 41.54 4.94
2144 2354 7.249927 TAAGTCATCTTAGGTTGTGCACCGT 62.250 44.000 15.69 3.89 41.54 4.83
2149 2359 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
2150 2360 2.115911 GGTTGTGCACCGTGACCAA 61.116 57.895 15.69 1.00 35.12 3.67
2151 2361 1.355210 GTTGTGCACCGTGACCAAG 59.645 57.895 15.69 0.00 0.00 3.61
2152 2362 1.821759 TTGTGCACCGTGACCAAGG 60.822 57.895 15.69 0.44 35.99 3.61
2153 2363 2.110213 GTGCACCGTGACCAAGGA 59.890 61.111 5.22 0.00 33.97 3.36
2154 2364 1.961277 GTGCACCGTGACCAAGGAG 60.961 63.158 5.22 2.30 33.97 3.69
2155 2365 2.358737 GCACCGTGACCAAGGAGG 60.359 66.667 8.91 2.33 45.67 4.30
2156 2366 2.879233 GCACCGTGACCAAGGAGGA 61.879 63.158 8.91 0.00 41.22 3.71
2157 2367 1.293498 CACCGTGACCAAGGAGGAG 59.707 63.158 8.91 0.00 41.22 3.69
2158 2368 1.913762 ACCGTGACCAAGGAGGAGG 60.914 63.158 8.91 0.00 41.22 4.30
2159 2369 2.660064 CCGTGACCAAGGAGGAGGG 61.660 68.421 0.00 0.00 41.22 4.30
2160 2370 2.660064 CGTGACCAAGGAGGAGGGG 61.660 68.421 0.00 0.00 41.22 4.79
2161 2371 1.229529 GTGACCAAGGAGGAGGGGA 60.230 63.158 0.00 0.00 41.22 4.81
2162 2372 0.840722 GTGACCAAGGAGGAGGGGAA 60.841 60.000 0.00 0.00 41.22 3.97
2163 2373 0.104144 TGACCAAGGAGGAGGGGAAA 60.104 55.000 0.00 0.00 41.22 3.13
2164 2374 1.073098 GACCAAGGAGGAGGGGAAAA 58.927 55.000 0.00 0.00 41.22 2.29
2165 2375 0.778083 ACCAAGGAGGAGGGGAAAAC 59.222 55.000 0.00 0.00 41.22 2.43
2166 2376 0.322546 CCAAGGAGGAGGGGAAAACG 60.323 60.000 0.00 0.00 41.22 3.60
2167 2377 0.690762 CAAGGAGGAGGGGAAAACGA 59.309 55.000 0.00 0.00 0.00 3.85
2168 2378 0.984995 AAGGAGGAGGGGAAAACGAG 59.015 55.000 0.00 0.00 0.00 4.18
2169 2379 0.116541 AGGAGGAGGGGAAAACGAGA 59.883 55.000 0.00 0.00 0.00 4.04
2170 2380 0.537653 GGAGGAGGGGAAAACGAGAG 59.462 60.000 0.00 0.00 0.00 3.20
2171 2381 1.558233 GAGGAGGGGAAAACGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10
2172 2382 1.900486 GAGGAGGGGAAAACGAGAGAA 59.100 52.381 0.00 0.00 0.00 2.87
2173 2383 1.624312 AGGAGGGGAAAACGAGAGAAC 59.376 52.381 0.00 0.00 0.00 3.01
2174 2384 1.624312 GGAGGGGAAAACGAGAGAACT 59.376 52.381 0.00 0.00 0.00 3.01
2175 2385 2.038689 GGAGGGGAAAACGAGAGAACTT 59.961 50.000 0.00 0.00 0.00 2.66
2176 2386 3.260128 GGAGGGGAAAACGAGAGAACTTA 59.740 47.826 0.00 0.00 0.00 2.24
2177 2387 4.262765 GGAGGGGAAAACGAGAGAACTTAA 60.263 45.833 0.00 0.00 0.00 1.85
2178 2388 5.489249 GAGGGGAAAACGAGAGAACTTAAT 58.511 41.667 0.00 0.00 0.00 1.40
2179 2389 5.246307 AGGGGAAAACGAGAGAACTTAATG 58.754 41.667 0.00 0.00 0.00 1.90
2180 2390 5.001874 GGGGAAAACGAGAGAACTTAATGT 58.998 41.667 0.00 0.00 0.00 2.71
2181 2391 5.472478 GGGGAAAACGAGAGAACTTAATGTT 59.528 40.000 0.00 0.00 42.38 2.71
2225 2435 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
2226 2436 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
2227 2437 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
2228 2438 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
2229 2439 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
2230 2440 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
2231 2441 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
2232 2442 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
2233 2443 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
2234 2444 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
2235 2445 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
2236 2446 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
2237 2447 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
2238 2448 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
2239 2449 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
2240 2450 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
2241 2451 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
2242 2452 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
2243 2453 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
2244 2454 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
2245 2455 2.412089 GCATGTCGTGTTTGGTAGTCTC 59.588 50.000 0.00 0.00 0.00 3.36
2246 2456 3.649073 CATGTCGTGTTTGGTAGTCTCA 58.351 45.455 0.00 0.00 0.00 3.27
2247 2457 3.804786 TGTCGTGTTTGGTAGTCTCAA 57.195 42.857 0.00 0.00 0.00 3.02
2248 2458 3.713288 TGTCGTGTTTGGTAGTCTCAAG 58.287 45.455 0.00 0.00 0.00 3.02
2249 2459 3.131577 TGTCGTGTTTGGTAGTCTCAAGT 59.868 43.478 0.00 0.00 0.00 3.16
2250 2460 3.734735 GTCGTGTTTGGTAGTCTCAAGTC 59.265 47.826 0.00 0.00 0.00 3.01
2251 2461 3.382227 TCGTGTTTGGTAGTCTCAAGTCA 59.618 43.478 0.00 0.00 0.00 3.41
2252 2462 4.038763 TCGTGTTTGGTAGTCTCAAGTCAT 59.961 41.667 0.00 0.00 0.00 3.06
2253 2463 4.750098 CGTGTTTGGTAGTCTCAAGTCATT 59.250 41.667 0.00 0.00 0.00 2.57
2254 2464 5.924254 CGTGTTTGGTAGTCTCAAGTCATTA 59.076 40.000 0.00 0.00 0.00 1.90
2255 2465 6.422701 CGTGTTTGGTAGTCTCAAGTCATTAA 59.577 38.462 0.00 0.00 0.00 1.40
2256 2466 7.042321 CGTGTTTGGTAGTCTCAAGTCATTAAA 60.042 37.037 0.00 0.00 0.00 1.52
2257 2467 8.617809 GTGTTTGGTAGTCTCAAGTCATTAAAA 58.382 33.333 0.00 0.00 0.00 1.52
2258 2468 8.836413 TGTTTGGTAGTCTCAAGTCATTAAAAG 58.164 33.333 0.00 0.00 0.00 2.27
2259 2469 7.435068 TTGGTAGTCTCAAGTCATTAAAAGC 57.565 36.000 0.00 0.00 0.00 3.51
2260 2470 6.530120 TGGTAGTCTCAAGTCATTAAAAGCA 58.470 36.000 0.00 0.00 0.00 3.91
2261 2471 7.168219 TGGTAGTCTCAAGTCATTAAAAGCAT 58.832 34.615 0.00 0.00 0.00 3.79
2262 2472 7.119699 TGGTAGTCTCAAGTCATTAAAAGCATG 59.880 37.037 0.00 0.00 0.00 4.06
2263 2473 5.947443 AGTCTCAAGTCATTAAAAGCATGC 58.053 37.500 10.51 10.51 0.00 4.06
2264 2474 5.474532 AGTCTCAAGTCATTAAAAGCATGCA 59.525 36.000 21.98 0.00 0.00 3.96
2265 2475 5.570589 GTCTCAAGTCATTAAAAGCATGCAC 59.429 40.000 21.98 6.43 0.00 4.57
2266 2476 5.241285 TCTCAAGTCATTAAAAGCATGCACA 59.759 36.000 21.98 0.00 0.00 4.57
2267 2477 5.221880 TCAAGTCATTAAAAGCATGCACAC 58.778 37.500 21.98 4.04 0.00 3.82
2268 2478 4.178545 AGTCATTAAAAGCATGCACACC 57.821 40.909 21.98 0.00 0.00 4.16
2269 2479 3.056607 AGTCATTAAAAGCATGCACACCC 60.057 43.478 21.98 0.00 0.00 4.61
2270 2480 2.233431 TCATTAAAAGCATGCACACCCC 59.767 45.455 21.98 0.00 0.00 4.95
2271 2481 1.709578 TTAAAAGCATGCACACCCCA 58.290 45.000 21.98 0.00 0.00 4.96
2272 2482 0.965439 TAAAAGCATGCACACCCCAC 59.035 50.000 21.98 0.00 0.00 4.61
2273 2483 1.047596 AAAAGCATGCACACCCCACA 61.048 50.000 21.98 0.00 0.00 4.17
2274 2484 0.832983 AAAGCATGCACACCCCACAT 60.833 50.000 21.98 0.00 0.00 3.21
2275 2485 1.252904 AAGCATGCACACCCCACATC 61.253 55.000 21.98 0.00 0.00 3.06
2276 2486 1.679977 GCATGCACACCCCACATCT 60.680 57.895 14.21 0.00 0.00 2.90
2277 2487 1.660560 GCATGCACACCCCACATCTC 61.661 60.000 14.21 0.00 0.00 2.75
2278 2488 0.034767 CATGCACACCCCACATCTCT 60.035 55.000 0.00 0.00 0.00 3.10
2279 2489 0.700564 ATGCACACCCCACATCTCTT 59.299 50.000 0.00 0.00 0.00 2.85
2280 2490 1.357137 TGCACACCCCACATCTCTTA 58.643 50.000 0.00 0.00 0.00 2.10
2281 2491 1.915489 TGCACACCCCACATCTCTTAT 59.085 47.619 0.00 0.00 0.00 1.73
2282 2492 2.308570 TGCACACCCCACATCTCTTATT 59.691 45.455 0.00 0.00 0.00 1.40
2283 2493 2.684881 GCACACCCCACATCTCTTATTG 59.315 50.000 0.00 0.00 0.00 1.90
2284 2494 3.282021 CACACCCCACATCTCTTATTGG 58.718 50.000 0.00 0.00 0.00 3.16
2285 2495 2.919602 ACACCCCACATCTCTTATTGGT 59.080 45.455 0.00 0.00 0.00 3.67
2286 2496 3.333680 ACACCCCACATCTCTTATTGGTT 59.666 43.478 0.00 0.00 0.00 3.67
2287 2497 3.696051 CACCCCACATCTCTTATTGGTTG 59.304 47.826 0.00 0.00 0.00 3.77
2288 2498 3.591527 ACCCCACATCTCTTATTGGTTGA 59.408 43.478 0.00 0.00 0.00 3.18
2289 2499 4.230502 ACCCCACATCTCTTATTGGTTGAT 59.769 41.667 0.00 0.00 0.00 2.57
2290 2500 5.431731 ACCCCACATCTCTTATTGGTTGATA 59.568 40.000 0.00 0.00 0.00 2.15
2291 2501 6.103205 ACCCCACATCTCTTATTGGTTGATAT 59.897 38.462 0.00 0.00 0.00 1.63
2292 2502 6.432162 CCCCACATCTCTTATTGGTTGATATG 59.568 42.308 0.00 0.00 0.00 1.78
2293 2503 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
2294 2504 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
2295 2505 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
2296 2506 9.112725 CACATCTCTTATTGGTTGATATGTCAA 57.887 33.333 0.03 0.03 41.89 3.18
2297 2507 9.334947 ACATCTCTTATTGGTTGATATGTCAAG 57.665 33.333 4.98 0.00 44.58 3.02
2298 2508 9.551734 CATCTCTTATTGGTTGATATGTCAAGA 57.448 33.333 4.98 0.00 44.58 3.02
2300 2510 9.958180 TCTCTTATTGGTTGATATGTCAAGAAA 57.042 29.630 4.98 3.84 44.58 2.52
2301 2511 9.994432 CTCTTATTGGTTGATATGTCAAGAAAC 57.006 33.333 4.98 0.00 44.58 2.78
2302 2512 9.513906 TCTTATTGGTTGATATGTCAAGAAACA 57.486 29.630 4.98 0.63 44.58 2.83
2305 2515 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
2306 2516 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
2307 2517 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
2308 2518 8.134895 TGGTTGATATGTCAAGAAACAAGAAAC 58.865 33.333 4.98 0.00 44.58 2.78
2309 2519 7.323656 GGTTGATATGTCAAGAAACAAGAAACG 59.676 37.037 4.98 0.00 44.58 3.60
2310 2520 7.722795 TGATATGTCAAGAAACAAGAAACGA 57.277 32.000 0.00 0.00 31.81 3.85
2311 2521 8.322906 TGATATGTCAAGAAACAAGAAACGAT 57.677 30.769 0.00 0.00 31.81 3.73
2312 2522 8.229811 TGATATGTCAAGAAACAAGAAACGATG 58.770 33.333 0.00 0.00 31.81 3.84
2313 2523 5.811399 TGTCAAGAAACAAGAAACGATGT 57.189 34.783 0.00 0.00 0.00 3.06
2314 2524 6.912203 TGTCAAGAAACAAGAAACGATGTA 57.088 33.333 0.00 0.00 0.00 2.29
2315 2525 6.943981 TGTCAAGAAACAAGAAACGATGTAG 58.056 36.000 0.00 0.00 0.00 2.74
2316 2526 6.759356 TGTCAAGAAACAAGAAACGATGTAGA 59.241 34.615 0.00 0.00 0.00 2.59
2317 2527 7.279090 TGTCAAGAAACAAGAAACGATGTAGAA 59.721 33.333 0.00 0.00 0.00 2.10
2318 2528 8.283291 GTCAAGAAACAAGAAACGATGTAGAAT 58.717 33.333 0.00 0.00 0.00 2.40
2319 2529 8.836413 TCAAGAAACAAGAAACGATGTAGAATT 58.164 29.630 0.00 0.00 0.00 2.17
2320 2530 9.450807 CAAGAAACAAGAAACGATGTAGAATTT 57.549 29.630 0.00 0.00 0.00 1.82
2325 2535 8.895932 ACAAGAAACGATGTAGAATTTAATGC 57.104 30.769 0.00 0.00 0.00 3.56
2326 2536 8.511321 ACAAGAAACGATGTAGAATTTAATGCA 58.489 29.630 0.00 0.00 0.00 3.96
2327 2537 8.788813 CAAGAAACGATGTAGAATTTAATGCAC 58.211 33.333 0.00 0.00 0.00 4.57
2328 2538 7.472543 AGAAACGATGTAGAATTTAATGCACC 58.527 34.615 0.00 0.00 0.00 5.01
2329 2539 5.403897 ACGATGTAGAATTTAATGCACCG 57.596 39.130 0.00 0.00 0.00 4.94
2330 2540 4.211389 CGATGTAGAATTTAATGCACCGC 58.789 43.478 0.00 0.00 0.00 5.68
2331 2541 3.666883 TGTAGAATTTAATGCACCGCG 57.333 42.857 0.00 0.00 0.00 6.46
2332 2542 2.223157 TGTAGAATTTAATGCACCGCGC 60.223 45.455 0.00 0.00 42.89 6.86
2333 2543 0.100503 AGAATTTAATGCACCGCGCC 59.899 50.000 0.00 0.00 41.33 6.53
2334 2544 0.100503 GAATTTAATGCACCGCGCCT 59.899 50.000 0.00 0.00 41.33 5.52
2335 2545 1.332375 GAATTTAATGCACCGCGCCTA 59.668 47.619 0.00 0.00 41.33 3.93
2336 2546 1.384525 ATTTAATGCACCGCGCCTAA 58.615 45.000 0.00 0.00 41.33 2.69
2337 2547 0.730265 TTTAATGCACCGCGCCTAAG 59.270 50.000 0.00 0.00 41.33 2.18
2338 2548 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
2339 2549 1.087202 TAATGCACCGCGCCTAAGTG 61.087 55.000 0.00 4.02 41.33 3.16
2340 2550 3.605749 ATGCACCGCGCCTAAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
2341 2551 3.047877 GCACCGCGCCTAAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
2342 2552 2.613506 GCACCGCGCCTAAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
2343 2553 1.946267 CACCGCGCCTAAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
2344 2554 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
2345 2555 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
2346 2556 1.209127 CGCGCCTAAGTGTTTTGGG 59.791 57.895 0.00 0.00 30.91 4.12
2347 2557 1.231958 CGCGCCTAAGTGTTTTGGGA 61.232 55.000 0.00 0.00 30.91 4.37
2348 2558 1.173913 GCGCCTAAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 30.91 3.85
2349 2559 1.544246 GCGCCTAAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 30.91 3.01
2350 2560 2.750712 GCGCCTAAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 30.91 1.75
2351 2561 3.380320 GCGCCTAAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 30.91 1.28
2352 2562 4.142249 GCGCCTAAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 30.91 1.40
2353 2563 5.623596 GCGCCTAAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 30.91 1.40
2354 2564 5.804979 CGCCTAAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 30.91 2.32
2355 2565 6.106003 GCCTAAGTGTTTTGGGATTATTTGG 58.894 40.000 0.00 0.00 30.91 3.28
2356 2566 6.295632 GCCTAAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 30.91 3.67
2357 2567 7.676004 CCTAAGTGTTTTGGGATTATTTGGTT 58.324 34.615 0.00 0.00 0.00 3.67
2358 2568 8.154203 CCTAAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
2359 2569 9.554395 CTAAGTGTTTTGGGATTATTTGGTTTT 57.446 29.630 0.00 0.00 0.00 2.43
2360 2570 8.445275 AAGTGTTTTGGGATTATTTGGTTTTC 57.555 30.769 0.00 0.00 0.00 2.29
2361 2571 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
2362 2572 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
2363 2573 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
2364 2574 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
2365 2575 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
2386 2596 6.636562 AAGATGACTTACATACCTAGACGG 57.363 41.667 0.00 0.00 39.56 4.79
2387 2597 5.938279 AGATGACTTACATACCTAGACGGA 58.062 41.667 0.00 0.00 39.56 4.69
2388 2598 5.998981 AGATGACTTACATACCTAGACGGAG 59.001 44.000 0.00 0.00 39.56 4.63
2389 2599 4.458397 TGACTTACATACCTAGACGGAGG 58.542 47.826 0.00 0.00 42.89 4.30
2390 2600 3.819902 GACTTACATACCTAGACGGAGGG 59.180 52.174 5.42 0.00 41.36 4.30
2391 2601 3.461085 ACTTACATACCTAGACGGAGGGA 59.539 47.826 5.42 0.00 41.36 4.20
2416 2626 0.322648 GAAAATGCTTGGGCTTGCCT 59.677 50.000 11.71 0.00 39.59 4.75
2488 2698 0.175531 GTTCAGCTGAGAGGGAGAGC 59.824 60.000 17.43 0.00 0.00 4.09
2510 2720 3.006940 TCGAACAGCGAGCCAAAATATT 58.993 40.909 0.00 0.00 45.59 1.28
2523 2733 8.798153 CGAGCCAAAATATTTTAGTCATGAAAC 58.202 33.333 12.98 0.00 0.00 2.78
2536 2746 1.065418 CATGAAACGAGGGGGCTAGTT 60.065 52.381 0.00 0.00 0.00 2.24
2539 2749 0.036671 AAACGAGGGGGCTAGTTTCG 60.037 55.000 0.00 0.00 32.05 3.46
2547 2757 4.461198 AGGGGGCTAGTTTCGAATTATTG 58.539 43.478 0.00 0.00 0.00 1.90
2604 2814 9.232473 GAGTTATGTTACTGAAAAAGGGAGATT 57.768 33.333 0.00 0.00 0.00 2.40
2624 2834 0.617413 ACAGCCCTCATTGACCTCAG 59.383 55.000 0.00 0.00 0.00 3.35
2638 2848 1.899142 ACCTCAGAAGAGCTTCACCTC 59.101 52.381 12.32 0.00 41.84 3.85
2641 2851 1.274728 TCAGAAGAGCTTCACCTCTGC 59.725 52.381 12.32 0.00 41.19 4.26
2644 2854 1.003003 GAAGAGCTTCACCTCTGCCTT 59.997 52.381 5.40 0.00 41.19 4.35
2904 3115 2.099098 CCTATCGCGGAAAATTTTGGCT 59.901 45.455 8.47 0.12 0.00 4.75
2931 3142 2.345991 GCTAGCCGTGTGGGAACA 59.654 61.111 2.29 0.00 38.47 3.18
3219 3645 7.934855 TTCAAGAGTACTGGTTACTACCTAG 57.065 40.000 0.00 0.00 45.27 3.02
3333 3760 4.437682 TTTTCCTGAGATGTCAACTGGT 57.562 40.909 0.00 0.00 30.14 4.00
3334 3761 3.685139 TTCCTGAGATGTCAACTGGTC 57.315 47.619 0.00 0.00 30.14 4.02
3345 3774 4.160329 TGTCAACTGGTCCTATCAAGTCT 58.840 43.478 0.00 0.00 0.00 3.24
3393 3822 5.577945 GGTGGTGCATTCTTTTGATGTATTG 59.422 40.000 0.00 0.00 0.00 1.90
3394 3823 6.389091 GTGGTGCATTCTTTTGATGTATTGA 58.611 36.000 0.00 0.00 0.00 2.57
3409 3838 5.419239 TGTATTGATGTGAGTGTCCATCA 57.581 39.130 0.00 0.00 44.17 3.07
3428 3857 3.293337 TCAATGAGGGCCATGAGAAATG 58.707 45.455 6.18 0.00 35.24 2.32
3438 3867 3.250744 CCATGAGAAATGCAGCTGTTTG 58.749 45.455 16.64 0.00 0.00 2.93
3558 3989 8.853077 AAATATTCTGCGAGGATCAATTGATA 57.147 30.769 20.75 3.66 34.37 2.15
3587 4018 3.638160 TGCAATCCTGATGCTATTTTCCC 59.362 43.478 0.00 0.00 44.14 3.97
3657 4088 6.001449 TGTCCAGGAGATAAATTTCGGAAT 57.999 37.500 0.00 0.00 0.00 3.01
3668 4099 9.462606 AGATAAATTTCGGAATAGGTGAAGTTT 57.537 29.630 0.00 0.00 36.16 2.66
3693 4126 9.466497 TTCCAGTAAGATCAAAAGATAAGCAAT 57.534 29.630 0.00 0.00 0.00 3.56
3714 4245 6.625740 GCAATACTCAATCTTGGCTTTTGCTA 60.626 38.462 0.00 0.00 46.54 3.49
3785 4338 8.606040 TGATATGACAAGATATTGATTGCGAA 57.394 30.769 7.16 0.00 0.00 4.70
3937 4499 5.602145 CCCTGAATAGAGGAAGAACTGAGAT 59.398 44.000 0.00 0.00 34.69 2.75
3939 4501 6.323482 CCTGAATAGAGGAAGAACTGAGATGA 59.677 42.308 0.00 0.00 34.69 2.92
4050 4612 4.410400 CTGCAGGAACCCGGTCCC 62.410 72.222 5.57 1.80 38.59 4.46
4096 4658 0.394565 GGAGATGTCGAATCCAGGGG 59.605 60.000 0.00 0.00 33.08 4.79
4307 4869 6.643770 CCTGTTGCTTTAATATCATCCATTGC 59.356 38.462 0.00 0.00 0.00 3.56
4308 4870 7.350744 TGTTGCTTTAATATCATCCATTGCT 57.649 32.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.700371 TGAGTCTTGACATCCACACAGT 59.300 45.455 3.49 0.00 0.00 3.55
14 15 3.391506 TGAGTCTTGACATCCACACAG 57.608 47.619 3.49 0.00 0.00 3.66
28 29 3.686227 AGAGGATGTCTCCATGAGTCT 57.314 47.619 0.00 0.00 44.79 3.24
44 45 3.603532 ACATTGTGCATGACAGTAGAGG 58.396 45.455 0.00 0.00 35.44 3.69
58 59 3.119388 CCCAAATGCACCTAGACATTGTG 60.119 47.826 0.00 0.23 36.64 3.33
61 62 3.737559 TCCCAAATGCACCTAGACATT 57.262 42.857 0.00 0.00 38.11 2.71
70 71 3.070018 CTCGGATAGATCCCAAATGCAC 58.930 50.000 2.89 0.00 44.24 4.57
81 82 5.327737 AACTAGAGGTTCCTCGGATAGAT 57.672 43.478 15.71 5.92 38.07 1.98
85 86 3.702045 CAGAAACTAGAGGTTCCTCGGAT 59.298 47.826 12.43 3.34 37.12 4.18
107 108 3.071479 TCTCCGTGTTTACTGCCATTTC 58.929 45.455 0.00 0.00 0.00 2.17
131 132 6.091441 AGCTCAAACATCTAGATTTTCGTGTC 59.909 38.462 1.33 0.00 0.00 3.67
133 134 6.246449 CAGCTCAAACATCTAGATTTTCGTG 58.754 40.000 1.33 0.00 0.00 4.35
134 135 5.163814 GCAGCTCAAACATCTAGATTTTCGT 60.164 40.000 1.33 0.00 0.00 3.85
144 145 2.026542 TCCTCATGCAGCTCAAACATCT 60.027 45.455 0.00 0.00 0.00 2.90
253 254 3.884895 AGCAATATGATGTGGGTTTCGA 58.115 40.909 0.00 0.00 0.00 3.71
255 256 4.646492 AGGAAGCAATATGATGTGGGTTTC 59.354 41.667 0.00 0.00 0.00 2.78
256 257 4.613437 AGGAAGCAATATGATGTGGGTTT 58.387 39.130 0.00 0.00 0.00 3.27
292 293 3.601443 AGTTGCTCGAGCTCACTTAAT 57.399 42.857 35.27 14.69 42.66 1.40
293 294 3.386768 AAGTTGCTCGAGCTCACTTAA 57.613 42.857 35.01 22.05 40.77 1.85
311 312 0.615331 TGCTCTGCCCTTGGAGTAAG 59.385 55.000 0.00 0.00 36.11 2.34
317 318 1.001764 TCACATGCTCTGCCCTTGG 60.002 57.895 0.00 0.00 0.00 3.61
324 325 2.821366 GGGCGGTCACATGCTCTG 60.821 66.667 0.00 0.00 0.00 3.35
340 341 2.273449 CTGTAAGGGGCAGCTGGG 59.727 66.667 17.12 0.00 0.00 4.45
349 350 0.238289 CAACGTTGCTGCTGTAAGGG 59.762 55.000 16.51 5.32 0.00 3.95
352 353 0.817634 AGCCAACGTTGCTGCTGTAA 60.818 50.000 25.06 0.00 37.76 2.41
360 362 4.043200 GGAGGCAGCCAACGTTGC 62.043 66.667 22.93 17.21 44.83 4.17
396 398 1.453155 AAGCACCATCCACGTTGATC 58.547 50.000 0.00 0.00 0.00 2.92
402 404 2.267351 TGCCAAAGCACCATCCACG 61.267 57.895 0.00 0.00 46.52 4.94
415 417 2.455557 CCCATGTATGTTCCTTGCCAA 58.544 47.619 0.00 0.00 0.00 4.52
422 424 0.033601 TGCACCCCCATGTATGTTCC 60.034 55.000 0.00 0.00 0.00 3.62
426 428 1.105457 CAACTGCACCCCCATGTATG 58.895 55.000 0.00 0.00 0.00 2.39
428 430 0.251121 CACAACTGCACCCCCATGTA 60.251 55.000 0.00 0.00 0.00 2.29
430 432 2.277591 CCACAACTGCACCCCCATG 61.278 63.158 0.00 0.00 0.00 3.66
450 452 3.967332 CCATTTTCATCCTGGCAAAGT 57.033 42.857 0.00 0.00 0.00 2.66
466 468 1.780503 GAGCCCAAATAGGTGCCATT 58.219 50.000 0.00 0.00 35.04 3.16
483 485 0.955919 GGAAGGTCCCTGCAAACGAG 60.956 60.000 0.00 0.00 0.00 4.18
486 488 0.955919 CTCGGAAGGTCCCTGCAAAC 60.956 60.000 0.00 0.00 31.13 2.93
488 490 2.592993 CCTCGGAAGGTCCCTGCAA 61.593 63.158 0.00 0.00 37.94 4.08
507 509 1.202521 AGCATCATTGGATCGTGCGTA 60.203 47.619 0.00 0.00 0.00 4.42
510 512 0.234106 CGAGCATCATTGGATCGTGC 59.766 55.000 0.00 0.00 39.15 5.34
512 514 2.602257 TTCGAGCATCATTGGATCGT 57.398 45.000 0.00 0.00 43.90 3.73
513 515 2.868583 AGTTTCGAGCATCATTGGATCG 59.131 45.455 0.00 0.00 44.77 3.69
564 566 7.731882 CATATGCTGGATATCAAGATCATCC 57.268 40.000 11.59 0.00 39.00 3.51
583 585 5.583854 GGCAATCAGATGCTACTACCATATG 59.416 44.000 0.00 0.00 45.68 1.78
608 610 4.755123 CGTTGATGTCTTTTACCACTCCTT 59.245 41.667 0.00 0.00 0.00 3.36
611 613 5.107065 CCTTCGTTGATGTCTTTTACCACTC 60.107 44.000 0.00 0.00 0.00 3.51
672 674 8.336801 ACATATAAGATGATCTACGTGCTACA 57.663 34.615 0.00 0.00 0.00 2.74
674 676 8.794335 AGACATATAAGATGATCTACGTGCTA 57.206 34.615 0.00 0.00 0.00 3.49
675 677 7.695480 AGACATATAAGATGATCTACGTGCT 57.305 36.000 0.00 0.00 0.00 4.40
751 759 7.331687 GGTGCTACAATTACAAGCAAATTTGAT 59.668 33.333 22.31 13.31 47.00 2.57
752 760 6.644592 GGTGCTACAATTACAAGCAAATTTGA 59.355 34.615 22.31 0.00 47.00 2.69
756 764 5.982890 AGGTGCTACAATTACAAGCAAAT 57.017 34.783 9.39 1.05 47.00 2.32
770 778 6.359480 GGTAACAATGTTCATAGGTGCTAC 57.641 41.667 0.22 0.00 0.00 3.58
788 796 4.396790 TCGCCCACTTTATTGATTGGTAAC 59.603 41.667 0.00 0.00 0.00 2.50
789 797 4.590918 TCGCCCACTTTATTGATTGGTAA 58.409 39.130 0.00 0.00 0.00 2.85
790 798 4.080807 TCTCGCCCACTTTATTGATTGGTA 60.081 41.667 0.00 0.00 0.00 3.25
791 799 3.016736 CTCGCCCACTTTATTGATTGGT 58.983 45.455 0.00 0.00 0.00 3.67
792 800 3.278574 TCTCGCCCACTTTATTGATTGG 58.721 45.455 0.00 0.00 0.00 3.16
793 801 5.505173 AATCTCGCCCACTTTATTGATTG 57.495 39.130 0.00 0.00 0.00 2.67
794 802 5.888161 AGAAATCTCGCCCACTTTATTGATT 59.112 36.000 0.00 0.00 0.00 2.57
795 803 5.440610 AGAAATCTCGCCCACTTTATTGAT 58.559 37.500 0.00 0.00 0.00 2.57
796 804 4.843728 AGAAATCTCGCCCACTTTATTGA 58.156 39.130 0.00 0.00 0.00 2.57
797 805 4.635765 TGAGAAATCTCGCCCACTTTATTG 59.364 41.667 5.99 0.00 45.72 1.90
798 806 4.843728 TGAGAAATCTCGCCCACTTTATT 58.156 39.130 5.99 0.00 45.72 1.40
799 807 4.487714 TGAGAAATCTCGCCCACTTTAT 57.512 40.909 5.99 0.00 45.72 1.40
800 808 3.973206 TGAGAAATCTCGCCCACTTTA 57.027 42.857 5.99 0.00 45.72 1.85
801 809 2.859165 TGAGAAATCTCGCCCACTTT 57.141 45.000 5.99 0.00 45.72 2.66
802 810 2.859165 TTGAGAAATCTCGCCCACTT 57.141 45.000 5.99 0.00 45.72 3.16
803 811 2.859165 TTTGAGAAATCTCGCCCACT 57.141 45.000 5.99 0.00 45.72 4.00
804 812 3.915437 TTTTTGAGAAATCTCGCCCAC 57.085 42.857 5.99 0.00 45.72 4.61
825 833 3.636764 ACAAAGAGCGAATGACCCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
826 834 3.222603 ACAAAGAGCGAATGACCCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
827 835 2.863809 ACAAAGAGCGAATGACCCTTT 58.136 42.857 0.00 0.00 0.00 3.11
828 836 2.568623 ACAAAGAGCGAATGACCCTT 57.431 45.000 0.00 0.00 0.00 3.95
829 837 2.568623 AACAAAGAGCGAATGACCCT 57.431 45.000 0.00 0.00 0.00 4.34
830 838 2.814336 AGAAACAAAGAGCGAATGACCC 59.186 45.455 0.00 0.00 0.00 4.46
831 839 4.489679 AAGAAACAAAGAGCGAATGACC 57.510 40.909 0.00 0.00 0.00 4.02
832 840 6.578919 CCTAAAAGAAACAAAGAGCGAATGAC 59.421 38.462 0.00 0.00 0.00 3.06
833 841 6.668323 CCTAAAAGAAACAAAGAGCGAATGA 58.332 36.000 0.00 0.00 0.00 2.57
834 842 5.343325 GCCTAAAAGAAACAAAGAGCGAATG 59.657 40.000 0.00 0.00 0.00 2.67
835 843 5.009610 TGCCTAAAAGAAACAAAGAGCGAAT 59.990 36.000 0.00 0.00 0.00 3.34
836 844 4.336993 TGCCTAAAAGAAACAAAGAGCGAA 59.663 37.500 0.00 0.00 0.00 4.70
837 845 3.880490 TGCCTAAAAGAAACAAAGAGCGA 59.120 39.130 0.00 0.00 0.00 4.93
838 846 4.223320 TGCCTAAAAGAAACAAAGAGCG 57.777 40.909 0.00 0.00 0.00 5.03
839 847 7.482654 AATTTGCCTAAAAGAAACAAAGAGC 57.517 32.000 0.00 0.00 34.08 4.09
858 866 2.031930 GTGCAAACACAGGGCAAATTTG 59.968 45.455 14.03 14.03 46.61 2.32
859 867 2.287769 GTGCAAACACAGGGCAAATTT 58.712 42.857 0.00 0.00 46.61 1.82
860 868 1.952193 GTGCAAACACAGGGCAAATT 58.048 45.000 0.00 0.00 46.61 1.82
861 869 3.684693 GTGCAAACACAGGGCAAAT 57.315 47.368 0.00 0.00 46.61 2.32
871 879 0.746204 TGTCGCCTCAAGTGCAAACA 60.746 50.000 0.00 0.00 0.00 2.83
872 880 0.593128 ATGTCGCCTCAAGTGCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
873 881 1.001487 CAATGTCGCCTCAAGTGCAAA 60.001 47.619 0.00 0.00 0.00 3.68
874 882 0.592637 CAATGTCGCCTCAAGTGCAA 59.407 50.000 0.00 0.00 0.00 4.08
875 883 1.855213 GCAATGTCGCCTCAAGTGCA 61.855 55.000 0.00 0.00 34.64 4.57
876 884 1.154150 GCAATGTCGCCTCAAGTGC 60.154 57.895 0.00 0.00 0.00 4.40
885 893 1.988834 CTAAACGGGGGCAATGTCGC 61.989 60.000 0.00 0.00 0.00 5.19
886 894 1.988834 GCTAAACGGGGGCAATGTCG 61.989 60.000 0.00 0.00 0.00 4.35
887 895 1.663379 GGCTAAACGGGGGCAATGTC 61.663 60.000 0.00 0.00 0.00 3.06
888 896 1.680989 GGCTAAACGGGGGCAATGT 60.681 57.895 0.00 0.00 0.00 2.71
889 897 2.423064 GGGCTAAACGGGGGCAATG 61.423 63.158 0.00 0.00 0.00 2.82
890 898 2.043349 GGGCTAAACGGGGGCAAT 60.043 61.111 0.00 0.00 0.00 3.56
891 899 2.847366 GATGGGCTAAACGGGGGCAA 62.847 60.000 0.00 0.00 0.00 4.52
892 900 3.343326 ATGGGCTAAACGGGGGCA 61.343 61.111 0.00 0.00 0.00 5.36
893 901 2.518587 GATGGGCTAAACGGGGGC 60.519 66.667 0.00 0.00 0.00 5.80
894 902 2.194868 GGATGGGCTAAACGGGGG 59.805 66.667 0.00 0.00 0.00 5.40
895 903 1.035385 GTTGGATGGGCTAAACGGGG 61.035 60.000 0.00 0.00 0.00 5.73
896 904 1.373590 CGTTGGATGGGCTAAACGGG 61.374 60.000 0.00 0.00 41.16 5.28
897 905 2.094904 CGTTGGATGGGCTAAACGG 58.905 57.895 0.00 0.00 41.16 4.44
898 906 0.675522 ACCGTTGGATGGGCTAAACG 60.676 55.000 0.03 0.03 43.69 3.60
899 907 2.406596 TACCGTTGGATGGGCTAAAC 57.593 50.000 0.00 0.00 0.00 2.01
900 908 3.349022 CTTTACCGTTGGATGGGCTAAA 58.651 45.455 0.00 0.00 0.00 1.85
901 909 2.942306 GCTTTACCGTTGGATGGGCTAA 60.942 50.000 0.00 0.00 0.00 3.09
902 910 1.407712 GCTTTACCGTTGGATGGGCTA 60.408 52.381 0.00 0.00 0.00 3.93
903 911 0.679960 GCTTTACCGTTGGATGGGCT 60.680 55.000 0.00 0.00 0.00 5.19
904 912 1.663379 GGCTTTACCGTTGGATGGGC 61.663 60.000 0.00 0.00 0.00 5.36
905 913 1.035385 GGGCTTTACCGTTGGATGGG 61.035 60.000 0.00 0.00 40.62 4.00
906 914 0.322997 TGGGCTTTACCGTTGGATGG 60.323 55.000 0.00 0.00 40.62 3.51
907 915 1.676006 GATGGGCTTTACCGTTGGATG 59.324 52.381 0.00 0.00 40.62 3.51
908 916 1.283613 TGATGGGCTTTACCGTTGGAT 59.716 47.619 0.00 0.00 40.62 3.41
909 917 0.693622 TGATGGGCTTTACCGTTGGA 59.306 50.000 0.00 0.00 40.62 3.53
910 918 1.201414 GTTGATGGGCTTTACCGTTGG 59.799 52.381 0.00 0.00 40.62 3.77
911 919 1.883275 TGTTGATGGGCTTTACCGTTG 59.117 47.619 0.00 0.00 40.62 4.10
912 920 2.159382 CTGTTGATGGGCTTTACCGTT 58.841 47.619 0.00 0.00 40.62 4.44
913 921 1.821216 CTGTTGATGGGCTTTACCGT 58.179 50.000 0.00 0.00 40.62 4.83
914 922 0.451783 GCTGTTGATGGGCTTTACCG 59.548 55.000 0.00 0.00 40.62 4.02
915 923 0.817654 GGCTGTTGATGGGCTTTACC 59.182 55.000 0.00 0.00 37.93 2.85
938 946 3.716601 CAAAATCAGGGAACAACCACAC 58.283 45.455 0.00 0.00 41.20 3.82
944 952 1.339610 CACCGCAAAATCAGGGAACAA 59.660 47.619 0.00 0.00 0.00 2.83
989 997 3.512329 ACAAAAAGAAACAGGTCCGGTTT 59.488 39.130 18.63 18.63 40.91 3.27
1025 1034 0.709992 AGAGAGGAGGAGACAGCCTT 59.290 55.000 0.00 0.00 38.73 4.35
1026 1035 0.709992 AAGAGAGGAGGAGACAGCCT 59.290 55.000 0.00 0.00 42.17 4.58
1027 1036 1.111277 GAAGAGAGGAGGAGACAGCC 58.889 60.000 0.00 0.00 0.00 4.85
1030 1039 0.336737 GGGGAAGAGAGGAGGAGACA 59.663 60.000 0.00 0.00 0.00 3.41
1031 1040 0.634465 AGGGGAAGAGAGGAGGAGAC 59.366 60.000 0.00 0.00 0.00 3.36
1032 1041 1.289530 GAAGGGGAAGAGAGGAGGAGA 59.710 57.143 0.00 0.00 0.00 3.71
1033 1042 1.691163 GGAAGGGGAAGAGAGGAGGAG 60.691 61.905 0.00 0.00 0.00 3.69
1034 1043 0.340208 GGAAGGGGAAGAGAGGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
1063 1076 2.879646 GGTAGAGATGTAGGTCAGGACG 59.120 54.545 0.00 0.00 0.00 4.79
1091 1104 2.338015 GCGGTGAGTCGGAGGTACA 61.338 63.158 0.00 0.00 0.00 2.90
1148 1162 1.528824 CAGGGACAGGAATGGCGAT 59.471 57.895 0.00 0.00 0.00 4.58
1151 1165 1.452833 GAGCAGGGACAGGAATGGC 60.453 63.158 0.00 0.00 0.00 4.40
1154 1168 1.901085 GACGAGCAGGGACAGGAAT 59.099 57.895 0.00 0.00 0.00 3.01
1189 1203 2.435410 AAAATCGCGGACGGGGTC 60.435 61.111 6.13 0.00 40.63 4.46
1190 1204 2.744709 CAAAATCGCGGACGGGGT 60.745 61.111 6.13 0.00 40.63 4.95
1231 1245 3.057019 TCACCAGACGAAAACAAGATCG 58.943 45.455 0.00 0.00 44.33 3.69
1243 1257 2.484264 GGTTTCAAGGAATCACCAGACG 59.516 50.000 0.00 0.00 42.04 4.18
1245 1259 2.225017 GGGGTTTCAAGGAATCACCAGA 60.225 50.000 3.95 0.00 42.04 3.86
1247 1261 1.501170 TGGGGTTTCAAGGAATCACCA 59.499 47.619 6.87 6.87 40.99 4.17
1248 1262 1.893137 GTGGGGTTTCAAGGAATCACC 59.107 52.381 2.12 2.12 35.89 4.02
1334 1348 5.282310 CGCAATCAAAATTTTCAGAGACTCG 59.718 40.000 0.00 0.00 0.00 4.18
1336 1350 6.317789 TCGCAATCAAAATTTTCAGAGACT 57.682 33.333 0.00 0.00 0.00 3.24
1338 1352 8.592105 AAATTCGCAATCAAAATTTTCAGAGA 57.408 26.923 0.00 0.00 30.49 3.10
1339 1353 9.654417 AAAAATTCGCAATCAAAATTTTCAGAG 57.346 25.926 0.00 0.00 40.08 3.35
1425 1611 5.389859 TTGTATCAAAACAGGCAAGGATG 57.610 39.130 0.00 0.00 0.00 3.51
1452 1640 2.202905 ACAACGGTTCGACGCCAA 60.203 55.556 6.10 0.00 37.37 4.52
1523 1711 5.431765 AGGGAGCACATACAATTTGAGTAG 58.568 41.667 2.79 0.00 0.00 2.57
1533 1721 2.758130 TGGATGTAGGGAGCACATACA 58.242 47.619 8.09 8.09 43.42 2.29
1623 1814 3.755112 TGGACACTTTGATAACGGACA 57.245 42.857 0.00 0.00 0.00 4.02
1648 1839 1.237285 GCGAATTGGGCCAGCGATAT 61.237 55.000 23.56 5.83 0.00 1.63
1649 1840 1.891919 GCGAATTGGGCCAGCGATA 60.892 57.895 23.56 3.56 0.00 2.92
1650 1841 3.211963 GCGAATTGGGCCAGCGAT 61.212 61.111 23.56 6.54 0.00 4.58
1660 1851 5.247507 TGGTATTGGAGATTTGCGAATTG 57.752 39.130 0.00 0.00 0.00 2.32
1665 1856 3.181488 TGCATTGGTATTGGAGATTTGCG 60.181 43.478 0.00 0.00 0.00 4.85
1676 1867 6.094603 CAGCTTTTCTAGAGTGCATTGGTATT 59.905 38.462 13.53 0.00 0.00 1.89
1694 1885 7.559335 AATCCCTAAATTTTCTCCAGCTTTT 57.441 32.000 0.00 0.00 0.00 2.27
1736 1936 1.887707 CCGTGAAGGGATTAGCGCC 60.888 63.158 2.29 0.00 35.97 6.53
1827 2028 7.337942 TCTTGGAAGATTGATAAAGAAGAAGGC 59.662 37.037 0.00 0.00 0.00 4.35
1924 2125 8.891671 AATTGATTTGCAAGTTCAACAGTTAT 57.108 26.923 21.93 8.60 40.42 1.89
1925 2126 9.462174 CTAATTGATTTGCAAGTTCAACAGTTA 57.538 29.630 21.93 16.85 40.42 2.24
1953 2154 9.552114 GCGATATGTGACTACTAATTAATACGT 57.448 33.333 0.00 0.00 0.00 3.57
1965 2166 4.814234 TGGAAAATGGCGATATGTGACTAC 59.186 41.667 0.00 0.00 0.00 2.73
2075 2285 5.991328 CAAAGACTGCTGTTTGAGTAAGA 57.009 39.130 0.00 0.00 35.99 2.10
2101 2311 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
2102 2312 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
2103 2313 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
2104 2314 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
2105 2315 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
2106 2316 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
2107 2317 4.200874 AGATGACTTACTCACCTAGACGG 58.799 47.826 0.00 0.00 39.35 4.79
2108 2318 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
2109 2319 6.829811 ACCTAAGATGACTTACTCACCTAGAC 59.170 42.308 0.00 0.00 37.53 2.59
2110 2320 6.971340 ACCTAAGATGACTTACTCACCTAGA 58.029 40.000 0.00 0.00 37.53 2.43
2111 2321 7.122948 ACAACCTAAGATGACTTACTCACCTAG 59.877 40.741 0.00 0.00 37.53 3.02
2112 2322 6.952358 ACAACCTAAGATGACTTACTCACCTA 59.048 38.462 0.00 0.00 37.53 3.08
2113 2323 5.780793 ACAACCTAAGATGACTTACTCACCT 59.219 40.000 0.00 0.00 37.53 4.00
2114 2324 5.869888 CACAACCTAAGATGACTTACTCACC 59.130 44.000 0.00 0.00 37.53 4.02
2115 2325 5.348997 GCACAACCTAAGATGACTTACTCAC 59.651 44.000 0.00 0.00 37.53 3.51
2116 2326 5.011635 TGCACAACCTAAGATGACTTACTCA 59.988 40.000 0.00 0.00 37.53 3.41
2117 2327 5.348997 GTGCACAACCTAAGATGACTTACTC 59.651 44.000 13.17 0.00 37.53 2.59
2118 2328 5.238583 GTGCACAACCTAAGATGACTTACT 58.761 41.667 13.17 0.00 37.53 2.24
2119 2329 4.392138 GGTGCACAACCTAAGATGACTTAC 59.608 45.833 20.43 0.00 46.55 2.34
2120 2330 4.575885 GGTGCACAACCTAAGATGACTTA 58.424 43.478 20.43 0.00 46.55 2.24
2121 2331 3.412386 GGTGCACAACCTAAGATGACTT 58.588 45.455 20.43 0.00 46.55 3.01
2122 2332 3.059352 GGTGCACAACCTAAGATGACT 57.941 47.619 20.43 0.00 46.55 3.41
2132 2342 2.058829 CTTGGTCACGGTGCACAACC 62.059 60.000 20.43 18.91 46.60 3.77
2133 2343 1.355210 CTTGGTCACGGTGCACAAC 59.645 57.895 20.43 10.47 0.00 3.32
2134 2344 1.821759 CCTTGGTCACGGTGCACAA 60.822 57.895 20.43 9.76 0.00 3.33
2135 2345 2.203139 CCTTGGTCACGGTGCACA 60.203 61.111 20.43 1.81 0.00 4.57
2136 2346 1.961277 CTCCTTGGTCACGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
2137 2347 2.425592 CTCCTTGGTCACGGTGCA 59.574 61.111 2.51 0.00 0.00 4.57
2138 2348 2.358737 CCTCCTTGGTCACGGTGC 60.359 66.667 2.51 0.00 0.00 5.01
2139 2349 1.293498 CTCCTCCTTGGTCACGGTG 59.707 63.158 0.56 0.56 37.07 4.94
2140 2350 1.913762 CCTCCTCCTTGGTCACGGT 60.914 63.158 0.00 0.00 37.07 4.83
2141 2351 2.660064 CCCTCCTCCTTGGTCACGG 61.660 68.421 0.00 0.00 37.07 4.94
2142 2352 2.660064 CCCCTCCTCCTTGGTCACG 61.660 68.421 0.00 0.00 37.07 4.35
2143 2353 0.840722 TTCCCCTCCTCCTTGGTCAC 60.841 60.000 0.00 0.00 37.07 3.67
2144 2354 0.104144 TTTCCCCTCCTCCTTGGTCA 60.104 55.000 0.00 0.00 37.07 4.02
2145 2355 1.073098 TTTTCCCCTCCTCCTTGGTC 58.927 55.000 0.00 0.00 37.07 4.02
2146 2356 0.778083 GTTTTCCCCTCCTCCTTGGT 59.222 55.000 0.00 0.00 37.07 3.67
2147 2357 0.322546 CGTTTTCCCCTCCTCCTTGG 60.323 60.000 0.00 0.00 37.10 3.61
2148 2358 0.690762 TCGTTTTCCCCTCCTCCTTG 59.309 55.000 0.00 0.00 0.00 3.61
2149 2359 0.984995 CTCGTTTTCCCCTCCTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
2150 2360 0.116541 TCTCGTTTTCCCCTCCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
2151 2361 0.537653 CTCTCGTTTTCCCCTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
2152 2362 1.558233 TCTCTCGTTTTCCCCTCCTC 58.442 55.000 0.00 0.00 0.00 3.71
2153 2363 1.624312 GTTCTCTCGTTTTCCCCTCCT 59.376 52.381 0.00 0.00 0.00 3.69
2154 2364 1.624312 AGTTCTCTCGTTTTCCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
2155 2365 3.404224 AAGTTCTCTCGTTTTCCCCTC 57.596 47.619 0.00 0.00 0.00 4.30
2156 2366 4.968971 TTAAGTTCTCTCGTTTTCCCCT 57.031 40.909 0.00 0.00 0.00 4.79
2157 2367 5.001874 ACATTAAGTTCTCTCGTTTTCCCC 58.998 41.667 0.00 0.00 0.00 4.81
2158 2368 6.555812 AACATTAAGTTCTCTCGTTTTCCC 57.444 37.500 0.00 0.00 34.74 3.97
2200 2410 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
2201 2411 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
2202 2412 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
2203 2413 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
2204 2414 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
2205 2415 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
2207 2417 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
2208 2418 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
2209 2419 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
2210 2420 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
2211 2421 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
2212 2422 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
2213 2423 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
2214 2424 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
2215 2425 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
2216 2426 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
2217 2427 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
2218 2428 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
2219 2429 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
2220 2430 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
2221 2431 2.143122 CTACCAAACACGACATGCAGT 58.857 47.619 0.00 0.00 0.00 4.40
2222 2432 2.143122 ACTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
2223 2433 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
2224 2434 2.412089 GAGACTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
2225 2435 3.649073 TGAGACTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
2226 2436 4.202223 ACTTGAGACTACCAAACACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
2227 2437 3.131577 ACTTGAGACTACCAAACACGACA 59.868 43.478 0.00 0.00 0.00 4.35
2228 2438 3.714391 ACTTGAGACTACCAAACACGAC 58.286 45.455 0.00 0.00 0.00 4.34
2229 2439 3.382227 TGACTTGAGACTACCAAACACGA 59.618 43.478 0.00 0.00 0.00 4.35
2230 2440 3.713288 TGACTTGAGACTACCAAACACG 58.287 45.455 0.00 0.00 0.00 4.49
2231 2441 7.724305 TTAATGACTTGAGACTACCAAACAC 57.276 36.000 0.00 0.00 0.00 3.32
2232 2442 8.740123 TTTTAATGACTTGAGACTACCAAACA 57.260 30.769 0.00 0.00 0.00 2.83
2233 2443 7.803659 GCTTTTAATGACTTGAGACTACCAAAC 59.196 37.037 0.00 0.00 0.00 2.93
2234 2444 7.500892 TGCTTTTAATGACTTGAGACTACCAAA 59.499 33.333 0.00 0.00 0.00 3.28
2235 2445 6.995686 TGCTTTTAATGACTTGAGACTACCAA 59.004 34.615 0.00 0.00 0.00 3.67
2236 2446 6.530120 TGCTTTTAATGACTTGAGACTACCA 58.470 36.000 0.00 0.00 0.00 3.25
2237 2447 7.467623 CATGCTTTTAATGACTTGAGACTACC 58.532 38.462 0.00 0.00 0.00 3.18
2238 2448 6.963805 GCATGCTTTTAATGACTTGAGACTAC 59.036 38.462 11.37 0.00 0.00 2.73
2239 2449 6.654582 TGCATGCTTTTAATGACTTGAGACTA 59.345 34.615 20.33 0.00 0.00 2.59
2240 2450 5.474532 TGCATGCTTTTAATGACTTGAGACT 59.525 36.000 20.33 0.00 0.00 3.24
2241 2451 5.570589 GTGCATGCTTTTAATGACTTGAGAC 59.429 40.000 20.33 0.00 0.00 3.36
2242 2452 5.241285 TGTGCATGCTTTTAATGACTTGAGA 59.759 36.000 20.33 0.00 0.00 3.27
2243 2453 5.344128 GTGTGCATGCTTTTAATGACTTGAG 59.656 40.000 20.33 0.00 0.00 3.02
2244 2454 5.221880 GTGTGCATGCTTTTAATGACTTGA 58.778 37.500 20.33 0.00 0.00 3.02
2245 2455 4.386652 GGTGTGCATGCTTTTAATGACTTG 59.613 41.667 20.33 0.00 0.00 3.16
2246 2456 4.559153 GGTGTGCATGCTTTTAATGACTT 58.441 39.130 20.33 0.00 0.00 3.01
2247 2457 3.056607 GGGTGTGCATGCTTTTAATGACT 60.057 43.478 20.33 0.00 0.00 3.41
2248 2458 3.253230 GGGTGTGCATGCTTTTAATGAC 58.747 45.455 20.33 6.41 0.00 3.06
2249 2459 2.233431 GGGGTGTGCATGCTTTTAATGA 59.767 45.455 20.33 0.00 0.00 2.57
2250 2460 2.028294 TGGGGTGTGCATGCTTTTAATG 60.028 45.455 20.33 0.00 0.00 1.90
2251 2461 2.028203 GTGGGGTGTGCATGCTTTTAAT 60.028 45.455 20.33 0.00 0.00 1.40
2252 2462 1.342819 GTGGGGTGTGCATGCTTTTAA 59.657 47.619 20.33 0.00 0.00 1.52
2253 2463 0.965439 GTGGGGTGTGCATGCTTTTA 59.035 50.000 20.33 0.00 0.00 1.52
2254 2464 1.047596 TGTGGGGTGTGCATGCTTTT 61.048 50.000 20.33 0.00 0.00 2.27
2255 2465 0.832983 ATGTGGGGTGTGCATGCTTT 60.833 50.000 20.33 0.00 0.00 3.51
2256 2466 1.228956 ATGTGGGGTGTGCATGCTT 60.229 52.632 20.33 0.00 0.00 3.91
2257 2467 1.679977 GATGTGGGGTGTGCATGCT 60.680 57.895 20.33 0.00 0.00 3.79
2258 2468 1.660560 GAGATGTGGGGTGTGCATGC 61.661 60.000 11.82 11.82 0.00 4.06
2259 2469 0.034767 AGAGATGTGGGGTGTGCATG 60.035 55.000 0.00 0.00 0.00 4.06
2260 2470 0.700564 AAGAGATGTGGGGTGTGCAT 59.299 50.000 0.00 0.00 0.00 3.96
2261 2471 1.357137 TAAGAGATGTGGGGTGTGCA 58.643 50.000 0.00 0.00 0.00 4.57
2262 2472 2.684881 CAATAAGAGATGTGGGGTGTGC 59.315 50.000 0.00 0.00 0.00 4.57
2263 2473 3.282021 CCAATAAGAGATGTGGGGTGTG 58.718 50.000 0.00 0.00 0.00 3.82
2264 2474 2.919602 ACCAATAAGAGATGTGGGGTGT 59.080 45.455 0.00 0.00 35.32 4.16
2265 2475 3.652057 ACCAATAAGAGATGTGGGGTG 57.348 47.619 0.00 0.00 35.32 4.61
2266 2476 3.591527 TCAACCAATAAGAGATGTGGGGT 59.408 43.478 0.00 0.00 35.32 4.95
2267 2477 4.235079 TCAACCAATAAGAGATGTGGGG 57.765 45.455 0.00 0.00 35.32 4.96
2268 2478 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
2269 2479 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
2270 2480 8.667076 TGACATATCAACCAATAAGAGATGTG 57.333 34.615 6.64 0.00 42.33 3.21
2271 2481 9.334947 CTTGACATATCAACCAATAAGAGATGT 57.665 33.333 0.00 0.00 44.20 3.06
2272 2482 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
2274 2484 9.958180 TTTCTTGACATATCAACCAATAAGAGA 57.042 29.630 0.00 0.00 40.01 3.10
2275 2485 9.994432 GTTTCTTGACATATCAACCAATAAGAG 57.006 33.333 0.00 0.00 40.01 2.85
2276 2486 9.513906 TGTTTCTTGACATATCAACCAATAAGA 57.486 29.630 0.00 0.00 40.01 2.10
2279 2489 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
2280 2490 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
2281 2491 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
2282 2492 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
2283 2493 7.323656 CGTTTCTTGTTTCTTGACATATCAACC 59.676 37.037 0.00 0.00 40.01 3.77
2284 2494 8.067784 TCGTTTCTTGTTTCTTGACATATCAAC 58.932 33.333 0.00 0.00 40.01 3.18
2285 2495 8.148807 TCGTTTCTTGTTTCTTGACATATCAA 57.851 30.769 0.00 0.00 42.73 2.57
2286 2496 7.722795 TCGTTTCTTGTTTCTTGACATATCA 57.277 32.000 0.00 0.00 0.00 2.15
2287 2497 8.230486 ACATCGTTTCTTGTTTCTTGACATATC 58.770 33.333 0.00 0.00 0.00 1.63
2288 2498 8.099364 ACATCGTTTCTTGTTTCTTGACATAT 57.901 30.769 0.00 0.00 0.00 1.78
2289 2499 7.490962 ACATCGTTTCTTGTTTCTTGACATA 57.509 32.000 0.00 0.00 0.00 2.29
2290 2500 6.377327 ACATCGTTTCTTGTTTCTTGACAT 57.623 33.333 0.00 0.00 0.00 3.06
2291 2501 5.811399 ACATCGTTTCTTGTTTCTTGACA 57.189 34.783 0.00 0.00 0.00 3.58
2292 2502 7.173863 TCTACATCGTTTCTTGTTTCTTGAC 57.826 36.000 0.00 0.00 0.00 3.18
2293 2503 7.780008 TTCTACATCGTTTCTTGTTTCTTGA 57.220 32.000 0.00 0.00 0.00 3.02
2294 2504 9.450807 AAATTCTACATCGTTTCTTGTTTCTTG 57.549 29.630 0.00 0.00 0.00 3.02
2299 2509 9.341899 GCATTAAATTCTACATCGTTTCTTGTT 57.658 29.630 0.00 0.00 0.00 2.83
2300 2510 8.511321 TGCATTAAATTCTACATCGTTTCTTGT 58.489 29.630 0.00 0.00 0.00 3.16
2301 2511 8.788813 GTGCATTAAATTCTACATCGTTTCTTG 58.211 33.333 0.00 0.00 0.00 3.02
2302 2512 7.968405 GGTGCATTAAATTCTACATCGTTTCTT 59.032 33.333 0.00 0.00 0.00 2.52
2303 2513 7.472543 GGTGCATTAAATTCTACATCGTTTCT 58.527 34.615 0.00 0.00 0.00 2.52
2304 2514 6.410914 CGGTGCATTAAATTCTACATCGTTTC 59.589 38.462 0.00 0.00 0.00 2.78
2305 2515 6.255215 CGGTGCATTAAATTCTACATCGTTT 58.745 36.000 0.00 0.00 0.00 3.60
2306 2516 5.729454 GCGGTGCATTAAATTCTACATCGTT 60.729 40.000 0.00 0.00 34.31 3.85
2307 2517 4.260620 GCGGTGCATTAAATTCTACATCGT 60.261 41.667 0.00 0.00 34.31 3.73
2308 2518 4.211389 GCGGTGCATTAAATTCTACATCG 58.789 43.478 0.00 0.00 34.89 3.84
2309 2519 4.211389 CGCGGTGCATTAAATTCTACATC 58.789 43.478 0.00 0.00 0.00 3.06
2310 2520 3.548014 GCGCGGTGCATTAAATTCTACAT 60.548 43.478 8.83 0.00 45.45 2.29
2311 2521 2.223157 GCGCGGTGCATTAAATTCTACA 60.223 45.455 8.83 0.00 45.45 2.74
2312 2522 2.372350 GCGCGGTGCATTAAATTCTAC 58.628 47.619 8.83 0.00 45.45 2.59
2313 2523 2.748461 GCGCGGTGCATTAAATTCTA 57.252 45.000 8.83 0.00 45.45 2.10
2314 2524 3.622459 GCGCGGTGCATTAAATTCT 57.378 47.368 8.83 0.00 45.45 2.40
2324 2534 2.125202 AAAACACTTAGGCGCGGTGC 62.125 55.000 8.83 4.64 45.38 5.01
2325 2535 0.385473 CAAAACACTTAGGCGCGGTG 60.385 55.000 8.83 9.75 37.05 4.94
2326 2536 1.512156 CCAAAACACTTAGGCGCGGT 61.512 55.000 8.83 0.00 0.00 5.68
2327 2537 1.209127 CCAAAACACTTAGGCGCGG 59.791 57.895 8.83 0.00 0.00 6.46
2328 2538 1.209127 CCCAAAACACTTAGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
2329 2539 1.173913 ATCCCAAAACACTTAGGCGC 58.826 50.000 0.00 0.00 0.00 6.53
2330 2540 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
2331 2541 6.106003 CCAAATAATCCCAAAACACTTAGGC 58.894 40.000 0.00 0.00 0.00 3.93
2332 2542 7.239763 ACCAAATAATCCCAAAACACTTAGG 57.760 36.000 0.00 0.00 0.00 2.69
2333 2543 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
2334 2544 9.549078 GAAAACCAAATAATCCCAAAACACTTA 57.451 29.630 0.00 0.00 0.00 2.24
2335 2545 7.225734 CGAAAACCAAATAATCCCAAAACACTT 59.774 33.333 0.00 0.00 0.00 3.16
2336 2546 6.704050 CGAAAACCAAATAATCCCAAAACACT 59.296 34.615 0.00 0.00 0.00 3.55
2337 2547 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
2338 2548 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
2339 2549 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
2340 2550 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
2341 2551 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
2342 2552 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
2343 2553 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
2344 2554 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
2345 2555 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
2360 2570 7.570875 CCGTCTAGGTATGTAAGTCATCTTACG 60.571 44.444 11.67 0.00 44.84 3.18
2361 2571 7.443575 TCCGTCTAGGTATGTAAGTCATCTTAC 59.556 40.741 10.12 10.12 45.87 2.34
2362 2572 7.512130 TCCGTCTAGGTATGTAAGTCATCTTA 58.488 38.462 0.00 0.00 41.99 2.10
2363 2573 6.363065 TCCGTCTAGGTATGTAAGTCATCTT 58.637 40.000 0.00 0.00 41.99 2.40
2364 2574 5.938279 TCCGTCTAGGTATGTAAGTCATCT 58.062 41.667 0.00 0.00 41.99 2.90
2365 2575 5.181622 CCTCCGTCTAGGTATGTAAGTCATC 59.818 48.000 0.00 0.00 41.99 2.92
2366 2576 5.071370 CCTCCGTCTAGGTATGTAAGTCAT 58.929 45.833 0.00 0.00 41.99 3.06
2367 2577 4.458397 CCTCCGTCTAGGTATGTAAGTCA 58.542 47.826 0.00 0.00 41.99 3.41
2368 2578 3.819902 CCCTCCGTCTAGGTATGTAAGTC 59.180 52.174 0.00 0.00 41.99 3.01
2369 2579 3.461085 TCCCTCCGTCTAGGTATGTAAGT 59.539 47.826 0.00 0.00 41.99 2.24
2370 2580 4.073549 CTCCCTCCGTCTAGGTATGTAAG 58.926 52.174 0.00 0.00 41.99 2.34
2371 2581 3.461085 ACTCCCTCCGTCTAGGTATGTAA 59.539 47.826 0.00 0.00 41.99 2.41
2372 2582 3.051581 ACTCCCTCCGTCTAGGTATGTA 58.948 50.000 0.00 0.00 41.99 2.29
2373 2583 1.851653 ACTCCCTCCGTCTAGGTATGT 59.148 52.381 0.00 0.00 41.99 2.29
2374 2584 2.660670 ACTCCCTCCGTCTAGGTATG 57.339 55.000 0.00 0.00 41.99 2.39
2375 2585 4.414846 TCTTTACTCCCTCCGTCTAGGTAT 59.585 45.833 0.00 0.00 41.99 2.73
2376 2586 3.782523 TCTTTACTCCCTCCGTCTAGGTA 59.217 47.826 0.00 0.00 41.99 3.08
2377 2587 2.579860 TCTTTACTCCCTCCGTCTAGGT 59.420 50.000 0.00 0.00 41.99 3.08
2378 2588 3.294038 TCTTTACTCCCTCCGTCTAGG 57.706 52.381 0.00 0.00 42.97 3.02
2379 2589 5.656213 TTTTCTTTACTCCCTCCGTCTAG 57.344 43.478 0.00 0.00 0.00 2.43
2380 2590 5.626116 GCATTTTCTTTACTCCCTCCGTCTA 60.626 44.000 0.00 0.00 0.00 2.59
2381 2591 4.833390 CATTTTCTTTACTCCCTCCGTCT 58.167 43.478 0.00 0.00 0.00 4.18
2382 2592 3.374367 GCATTTTCTTTACTCCCTCCGTC 59.626 47.826 0.00 0.00 0.00 4.79
2383 2593 3.009143 AGCATTTTCTTTACTCCCTCCGT 59.991 43.478 0.00 0.00 0.00 4.69
2384 2594 3.610911 AGCATTTTCTTTACTCCCTCCG 58.389 45.455 0.00 0.00 0.00 4.63
2385 2595 4.158579 CCAAGCATTTTCTTTACTCCCTCC 59.841 45.833 0.00 0.00 0.00 4.30
2386 2596 4.158579 CCCAAGCATTTTCTTTACTCCCTC 59.841 45.833 0.00 0.00 0.00 4.30
2387 2597 4.089361 CCCAAGCATTTTCTTTACTCCCT 58.911 43.478 0.00 0.00 0.00 4.20
2388 2598 3.368427 GCCCAAGCATTTTCTTTACTCCC 60.368 47.826 0.00 0.00 39.53 4.30
2389 2599 3.511540 AGCCCAAGCATTTTCTTTACTCC 59.488 43.478 0.00 0.00 43.56 3.85
2390 2600 4.790765 AGCCCAAGCATTTTCTTTACTC 57.209 40.909 0.00 0.00 43.56 2.59
2391 2601 4.800582 GCAAGCCCAAGCATTTTCTTTACT 60.801 41.667 0.00 0.00 43.56 2.24
2510 2720 2.617021 GCCCCCTCGTTTCATGACTAAA 60.617 50.000 0.00 0.00 0.00 1.85
2523 2733 0.464452 ATTCGAAACTAGCCCCCTCG 59.536 55.000 0.00 0.00 0.00 4.63
2536 2746 7.640597 TCTAGAGTCCAGTCAATAATTCGAA 57.359 36.000 0.00 0.00 0.00 3.71
2587 2797 5.497474 GGCTGTAATCTCCCTTTTTCAGTA 58.503 41.667 0.00 0.00 0.00 2.74
2604 2814 1.833630 CTGAGGTCAATGAGGGCTGTA 59.166 52.381 0.00 0.00 0.00 2.74
2624 2834 0.612744 AGGCAGAGGTGAAGCTCTTC 59.387 55.000 9.27 5.05 39.91 2.87
2638 2848 2.609002 GACAGGCAAAACAAAAAGGCAG 59.391 45.455 0.00 0.00 0.00 4.85
2641 2851 3.490526 CGATGACAGGCAAAACAAAAAGG 59.509 43.478 0.00 0.00 0.00 3.11
2644 2854 2.690497 TCCGATGACAGGCAAAACAAAA 59.310 40.909 0.00 0.00 0.00 2.44
2717 2927 5.702670 CAGAAGAGCCAACTATCAGAACAAA 59.297 40.000 0.00 0.00 0.00 2.83
2918 3129 0.240945 CTTTGATGTTCCCACACGGC 59.759 55.000 0.00 0.00 35.03 5.68
3315 3742 1.902508 GGACCAGTTGACATCTCAGGA 59.097 52.381 0.00 0.00 0.00 3.86
3316 3743 1.905215 AGGACCAGTTGACATCTCAGG 59.095 52.381 0.00 0.00 0.00 3.86
3333 3760 8.178313 TGCGAAAATATCTAGACTTGATAGGA 57.822 34.615 11.44 0.00 31.03 2.94
3334 3761 7.543868 CCTGCGAAAATATCTAGACTTGATAGG 59.456 40.741 11.44 4.01 31.03 2.57
3345 3774 5.738619 TCCATAGCCTGCGAAAATATCTA 57.261 39.130 0.00 0.00 0.00 1.98
3393 3822 3.875727 CCTCATTGATGGACACTCACATC 59.124 47.826 0.00 0.00 42.86 3.06
3394 3823 3.371273 CCCTCATTGATGGACACTCACAT 60.371 47.826 1.98 0.00 0.00 3.21
3409 3838 2.037144 GCATTTCTCATGGCCCTCATT 58.963 47.619 0.00 0.00 32.92 2.57
3428 3857 1.921243 AAACGAAACCAAACAGCTGC 58.079 45.000 15.27 0.00 0.00 5.25
3468 3897 7.978975 GCTCATACAGCCAACCAAATAAAATAA 59.021 33.333 0.00 0.00 43.17 1.40
3469 3898 7.488322 GCTCATACAGCCAACCAAATAAAATA 58.512 34.615 0.00 0.00 43.17 1.40
3470 3899 6.340522 GCTCATACAGCCAACCAAATAAAAT 58.659 36.000 0.00 0.00 43.17 1.82
3471 3900 5.719173 GCTCATACAGCCAACCAAATAAAA 58.281 37.500 0.00 0.00 43.17 1.52
3601 4032 7.994425 TCAGTTGGAGCAATCTGTTAAAATA 57.006 32.000 0.00 0.00 30.55 1.40
3653 4084 6.708285 TCTTACTGGAAACTTCACCTATTCC 58.292 40.000 0.00 0.00 41.37 3.01
3657 4088 6.928348 TGATCTTACTGGAAACTTCACCTA 57.072 37.500 0.00 0.00 0.00 3.08
3693 4126 5.106157 GCTTAGCAAAAGCCAAGATTGAGTA 60.106 40.000 11.63 0.00 37.30 2.59
3694 4127 4.321527 GCTTAGCAAAAGCCAAGATTGAGT 60.322 41.667 11.63 0.00 37.30 3.41
3698 4229 3.056322 CCAGCTTAGCAAAAGCCAAGATT 60.056 43.478 17.34 0.00 44.01 2.40
3714 4245 2.835764 ACATTGAATGCAATCCCAGCTT 59.164 40.909 4.84 0.00 42.66 3.74
3785 4338 1.961793 TCTTTAACTGTGTTGGCGCT 58.038 45.000 7.64 0.00 0.00 5.92
3999 4561 1.189752 GTGGAGACAGCTGATGGAGA 58.810 55.000 23.35 0.00 44.46 3.71
4038 4600 4.091939 CCTTCGGGACCGGGTTCC 62.092 72.222 15.13 15.13 40.25 3.62
4050 4612 0.107945 CCTTCTCCTTCCTGCCTTCG 60.108 60.000 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.