Multiple sequence alignment - TraesCS3B01G413300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G413300 chr3B 100.000 2582 0 0 1 2582 650350973 650353554 0.000000e+00 4769.0
1 TraesCS3B01G413300 chr3B 91.172 1280 108 5 618 1896 768153944 768155219 0.000000e+00 1733.0
2 TraesCS3B01G413300 chr3B 90.881 1283 109 6 618 1896 767955411 767956689 0.000000e+00 1714.0
3 TraesCS3B01G413300 chr3B 90.725 1283 111 6 618 1896 767841054 767842332 0.000000e+00 1703.0
4 TraesCS3B01G413300 chr3B 84.351 262 30 6 2318 2569 650346271 650346531 1.980000e-61 246.0
5 TraesCS3B01G413300 chr2B 94.090 1286 73 3 616 1899 497802956 497801672 0.000000e+00 1951.0
6 TraesCS3B01G413300 chr2B 92.751 1283 88 4 618 1897 694693064 694694344 0.000000e+00 1849.0
7 TraesCS3B01G413300 chr2B 84.663 163 17 4 390 552 173440822 173440976 3.440000e-34 156.0
8 TraesCS3B01G413300 chr2B 88.889 72 6 1 2149 2218 142749695 142749624 1.270000e-13 87.9
9 TraesCS3B01G413300 chr2B 85.915 71 9 1 548 618 30588337 30588406 9.910000e-10 75.0
10 TraesCS3B01G413300 chr5B 92.278 1282 82 6 618 1897 421162040 421163306 0.000000e+00 1803.0
11 TraesCS3B01G413300 chr5B 81.290 155 15 8 389 531 147244582 147244734 2.100000e-21 113.0
12 TraesCS3B01G413300 chr5B 91.667 60 5 0 559 618 112375568 112375509 1.650000e-12 84.2
13 TraesCS3B01G413300 chr5B 92.727 55 4 0 564 618 34042963 34043017 2.130000e-11 80.5
14 TraesCS3B01G413300 chr5B 86.957 69 2 7 2149 2213 440182251 440182186 1.280000e-08 71.3
15 TraesCS3B01G413300 chrUn 91.250 1280 107 5 618 1896 305559877 305558602 0.000000e+00 1738.0
16 TraesCS3B01G413300 chrUn 91.172 1280 108 5 618 1896 305564167 305562892 0.000000e+00 1733.0
17 TraesCS3B01G413300 chr6B 90.683 1288 115 5 617 1902 140719878 140718594 0.000000e+00 1709.0
18 TraesCS3B01G413300 chr6B 90.909 55 5 0 564 618 312520080 312520134 9.910000e-10 75.0
19 TraesCS3B01G413300 chr6B 89.655 58 6 0 556 613 393233232 393233289 9.910000e-10 75.0
20 TraesCS3B01G413300 chr3A 92.918 353 24 1 2230 2582 630922094 630922445 1.770000e-141 512.0
21 TraesCS3B01G413300 chr3A 84.307 274 30 7 2319 2582 630915318 630915588 3.300000e-64 255.0
22 TraesCS3B01G413300 chr3A 83.333 246 31 10 1896 2135 62432992 62433233 4.330000e-53 219.0
23 TraesCS3B01G413300 chr3A 89.831 59 5 1 2087 2144 564428408 564428350 9.910000e-10 75.0
24 TraesCS3B01G413300 chr3A 100.000 37 0 0 2094 2130 648022156 648022192 4.610000e-08 69.4
25 TraesCS3B01G413300 chr3D 91.781 365 20 6 2222 2582 487230034 487230392 1.380000e-137 499.0
26 TraesCS3B01G413300 chr3D 85.763 295 31 9 1 289 487229041 487229330 4.180000e-78 302.0
27 TraesCS3B01G413300 chr3D 85.075 268 27 7 2325 2582 487223673 487223937 7.090000e-66 261.0
28 TraesCS3B01G413300 chr3D 92.405 158 11 1 1897 2053 108290905 108291062 9.300000e-55 224.0
29 TraesCS3B01G413300 chr3D 95.918 49 2 0 570 618 207493870 207493918 2.130000e-11 80.5
30 TraesCS3B01G413300 chr3D 84.416 77 9 2 2148 2222 573435162 573435087 3.560000e-09 73.1
31 TraesCS3B01G413300 chr2D 93.631 157 9 1 1896 2052 315063471 315063626 1.540000e-57 233.0
32 TraesCS3B01G413300 chr2D 89.143 175 18 1 1896 2069 357650842 357651016 1.560000e-52 217.0
33 TraesCS3B01G413300 chr2D 76.510 298 61 9 1 295 481611017 481610726 1.240000e-33 154.0
34 TraesCS3B01G413300 chr2D 97.727 44 1 0 2092 2135 354267657 354267614 2.760000e-10 76.8
35 TraesCS3B01G413300 chr2D 93.878 49 3 0 570 618 21826909 21826861 9.910000e-10 75.0
36 TraesCS3B01G413300 chr5D 92.073 164 11 2 1894 2055 421982426 421982589 2.000000e-56 230.0
37 TraesCS3B01G413300 chr5D 92.025 163 12 1 1896 2057 48310340 48310502 7.190000e-56 228.0
38 TraesCS3B01G413300 chr5D 82.243 107 13 6 395 498 15661408 15661305 1.270000e-13 87.9
39 TraesCS3B01G413300 chr5D 90.000 50 2 1 2101 2150 229598630 229598676 7.710000e-06 62.1
40 TraesCS3B01G413300 chr5D 90.000 50 2 1 2101 2150 229892583 229892629 7.710000e-06 62.1
41 TraesCS3B01G413300 chr7D 92.500 160 11 1 1894 2052 538520691 538520532 7.190000e-56 228.0
42 TraesCS3B01G413300 chr7B 91.975 162 12 1 1896 2056 64575732 64575571 2.590000e-55 226.0
43 TraesCS3B01G413300 chr7B 90.000 170 15 2 1896 2064 30391698 30391866 4.330000e-53 219.0
44 TraesCS3B01G413300 chr7B 91.667 60 5 0 559 618 425461019 425461078 1.650000e-12 84.2
45 TraesCS3B01G413300 chr4A 83.234 167 26 1 389 555 250824306 250824142 4.450000e-33 152.0
46 TraesCS3B01G413300 chr4A 90.476 63 6 0 556 618 611412964 611412902 1.650000e-12 84.2
47 TraesCS3B01G413300 chr4A 100.000 37 0 0 2094 2130 658405647 658405683 4.610000e-08 69.4
48 TraesCS3B01G413300 chr1D 90.541 74 7 0 2149 2222 95870206 95870133 5.880000e-17 99.0
49 TraesCS3B01G413300 chr1D 92.063 63 5 0 556 618 191229822 191229760 3.540000e-14 89.8
50 TraesCS3B01G413300 chr1D 88.235 68 6 2 2149 2214 110770960 110771027 2.130000e-11 80.5
51 TraesCS3B01G413300 chr1D 95.455 44 2 0 570 613 50898021 50897978 1.280000e-08 71.3
52 TraesCS3B01G413300 chr1B 88.889 72 6 1 2149 2218 109711155 109711084 1.270000e-13 87.9
53 TraesCS3B01G413300 chr7A 88.732 71 6 2 319 388 23163236 23163167 4.580000e-13 86.1
54 TraesCS3B01G413300 chr5A 87.838 74 7 2 2151 2222 329991939 329991866 4.580000e-13 86.1
55 TraesCS3B01G413300 chr5A 90.909 55 5 0 564 618 59028061 59028115 9.910000e-10 75.0
56 TraesCS3B01G413300 chr5A 95.349 43 2 0 2092 2134 399300835 399300877 4.610000e-08 69.4
57 TraesCS3B01G413300 chr5A 97.368 38 1 0 2093 2130 494974635 494974598 5.960000e-07 65.8
58 TraesCS3B01G413300 chr4B 90.323 62 6 0 557 618 300051040 300050979 5.920000e-12 82.4
59 TraesCS3B01G413300 chr4B 87.143 70 7 1 2149 2216 610571423 610571492 7.660000e-11 78.7
60 TraesCS3B01G413300 chr4B 90.909 55 5 0 564 618 666787213 666787267 9.910000e-10 75.0
61 TraesCS3B01G413300 chr4B 83.117 77 11 1 2148 2222 536122955 536122879 4.610000e-08 69.4
62 TraesCS3B01G413300 chr6D 77.612 134 26 3 160 291 157979591 157979722 7.660000e-11 78.7
63 TraesCS3B01G413300 chr6D 90.000 50 2 2 2101 2150 241553368 241553322 7.710000e-06 62.1
64 TraesCS3B01G413300 chr4D 88.889 63 7 0 556 618 179931017 179930955 7.660000e-11 78.7
65 TraesCS3B01G413300 chr2A 95.556 45 1 1 2087 2130 758089226 758089270 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G413300 chr3B 650350973 650353554 2581 False 4769.0 4769 100.000 1 2582 1 chr3B.!!$F2 2581
1 TraesCS3B01G413300 chr3B 768153944 768155219 1275 False 1733.0 1733 91.172 618 1896 1 chr3B.!!$F5 1278
2 TraesCS3B01G413300 chr3B 767955411 767956689 1278 False 1714.0 1714 90.881 618 1896 1 chr3B.!!$F4 1278
3 TraesCS3B01G413300 chr3B 767841054 767842332 1278 False 1703.0 1703 90.725 618 1896 1 chr3B.!!$F3 1278
4 TraesCS3B01G413300 chr2B 497801672 497802956 1284 True 1951.0 1951 94.090 616 1899 1 chr2B.!!$R2 1283
5 TraesCS3B01G413300 chr2B 694693064 694694344 1280 False 1849.0 1849 92.751 618 1897 1 chr2B.!!$F3 1279
6 TraesCS3B01G413300 chr5B 421162040 421163306 1266 False 1803.0 1803 92.278 618 1897 1 chr5B.!!$F3 1279
7 TraesCS3B01G413300 chrUn 305558602 305564167 5565 True 1735.5 1738 91.211 618 1896 2 chrUn.!!$R1 1278
8 TraesCS3B01G413300 chr6B 140718594 140719878 1284 True 1709.0 1709 90.683 617 1902 1 chr6B.!!$R1 1285
9 TraesCS3B01G413300 chr3D 487229041 487230392 1351 False 400.5 499 88.772 1 2582 2 chr3D.!!$F4 2581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 759 0.326595 TTAGATTTGGGTCGGCAGCA 59.673 50.0 0.0 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2304 6831 0.166597 CGTAGTACTCGCACCGTTCA 59.833 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.519013 GATATCAAATCTGGGTGCCCC 58.481 52.381 4.59 3.42 45.71 5.80
44 45 5.106555 CCAATCTACTCGCATGTGAAGTTTT 60.107 40.000 10.71 2.59 0.00 2.43
131 135 8.421249 AAATTGTTTGGATGAATCTTAGGTCA 57.579 30.769 0.00 0.00 0.00 4.02
134 138 6.962182 TGTTTGGATGAATCTTAGGTCAGAT 58.038 36.000 0.00 0.00 34.78 2.90
151 155 6.431234 AGGTCAGATTGTATTTCTTTCACCAC 59.569 38.462 0.00 0.00 0.00 4.16
153 157 6.147164 GTCAGATTGTATTTCTTTCACCACGA 59.853 38.462 0.00 0.00 0.00 4.35
157 161 8.665685 AGATTGTATTTCTTTCACCACGAATAC 58.334 33.333 0.00 0.00 32.32 1.89
167 171 2.682856 CACCACGAATACATTTCCTGGG 59.317 50.000 0.00 0.00 31.61 4.45
168 172 2.307686 ACCACGAATACATTTCCTGGGT 59.692 45.455 0.00 0.00 31.61 4.51
194 199 2.746269 TCGTAAAACTTCACACGGGAG 58.254 47.619 0.00 0.00 35.21 4.30
314 320 3.566322 CCAGGTGTATTTTCCGTTGTTGA 59.434 43.478 0.00 0.00 0.00 3.18
331 356 9.093970 CCGTTGTTGACTAATATGATACTCAAA 57.906 33.333 0.00 0.00 0.00 2.69
336 361 9.262358 GTTGACTAATATGATACTCAAACCCTC 57.738 37.037 0.00 0.00 0.00 4.30
338 363 8.861086 TGACTAATATGATACTCAAACCCTCTC 58.139 37.037 0.00 0.00 0.00 3.20
343 368 5.422214 TGATACTCAAACCCTCTCTTTCC 57.578 43.478 0.00 0.00 0.00 3.13
345 370 5.187967 TGATACTCAAACCCTCTCTTTCCTC 59.812 44.000 0.00 0.00 0.00 3.71
356 381 6.011628 ACCCTCTCTTTCCTCATTTAATTCCA 60.012 38.462 0.00 0.00 0.00 3.53
358 383 8.220559 CCCTCTCTTTCCTCATTTAATTCCATA 58.779 37.037 0.00 0.00 0.00 2.74
359 384 9.804977 CCTCTCTTTCCTCATTTAATTCCATAT 57.195 33.333 0.00 0.00 0.00 1.78
365 392 8.607441 TTCCTCATTTAATTCCATATCACTCG 57.393 34.615 0.00 0.00 0.00 4.18
367 394 7.872993 TCCTCATTTAATTCCATATCACTCGTC 59.127 37.037 0.00 0.00 0.00 4.20
388 415 5.562696 CGTCAAAATTGTCTAGTTGGCATGT 60.563 40.000 0.00 0.00 0.00 3.21
389 416 5.630680 GTCAAAATTGTCTAGTTGGCATGTG 59.369 40.000 0.00 0.00 0.00 3.21
390 417 4.789012 AAATTGTCTAGTTGGCATGTGG 57.211 40.909 0.00 0.00 0.00 4.17
393 420 1.278985 TGTCTAGTTGGCATGTGGGAG 59.721 52.381 0.00 0.00 0.00 4.30
394 421 1.279271 GTCTAGTTGGCATGTGGGAGT 59.721 52.381 0.00 0.00 0.00 3.85
395 422 2.500098 GTCTAGTTGGCATGTGGGAGTA 59.500 50.000 0.00 0.00 0.00 2.59
398 425 1.915489 AGTTGGCATGTGGGAGTATCA 59.085 47.619 0.00 0.00 36.25 2.15
402 429 4.356405 TGGCATGTGGGAGTATCATAAG 57.644 45.455 0.00 0.00 36.25 1.73
404 431 4.067896 GGCATGTGGGAGTATCATAAGTG 58.932 47.826 0.00 0.00 36.25 3.16
405 432 4.067896 GCATGTGGGAGTATCATAAGTGG 58.932 47.826 0.00 0.00 36.25 4.00
407 434 5.221641 GCATGTGGGAGTATCATAAGTGGTA 60.222 44.000 0.00 0.00 36.25 3.25
408 435 6.520742 GCATGTGGGAGTATCATAAGTGGTAT 60.521 42.308 0.00 0.00 36.25 2.73
410 437 6.140377 TGTGGGAGTATCATAAGTGGTATCA 58.860 40.000 0.00 0.00 36.25 2.15
411 438 6.787458 TGTGGGAGTATCATAAGTGGTATCAT 59.213 38.462 0.00 0.00 36.25 2.45
413 440 6.787458 TGGGAGTATCATAAGTGGTATCATGT 59.213 38.462 0.00 0.00 36.25 3.21
414 441 7.953493 TGGGAGTATCATAAGTGGTATCATGTA 59.047 37.037 0.00 0.00 36.25 2.29
415 442 8.982723 GGGAGTATCATAAGTGGTATCATGTAT 58.017 37.037 0.00 0.00 36.25 2.29
418 445 8.260818 AGTATCATAAGTGGTATCATGTATGCC 58.739 37.037 0.00 0.00 40.61 4.40
419 446 6.432403 TCATAAGTGGTATCATGTATGCCA 57.568 37.500 9.68 9.68 46.94 4.92
426 453 5.853936 TGGTATCATGTATGCCAACTAGAC 58.146 41.667 10.83 0.00 46.22 2.59
427 454 5.221641 TGGTATCATGTATGCCAACTAGACC 60.222 44.000 10.83 0.00 46.22 3.85
428 455 5.012148 GGTATCATGTATGCCAACTAGACCT 59.988 44.000 0.00 0.00 39.99 3.85
429 456 5.636903 ATCATGTATGCCAACTAGACCTT 57.363 39.130 0.00 0.00 0.00 3.50
430 457 5.023533 TCATGTATGCCAACTAGACCTTC 57.976 43.478 0.00 0.00 0.00 3.46
434 465 4.469586 TGTATGCCAACTAGACCTTCATGA 59.530 41.667 0.00 0.00 0.00 3.07
438 469 4.125703 GCCAACTAGACCTTCATGATGAG 58.874 47.826 10.07 0.00 0.00 2.90
444 475 0.994247 ACCTTCATGATGAGGTGGCA 59.006 50.000 16.75 0.00 30.44 4.92
445 476 1.340405 ACCTTCATGATGAGGTGGCAC 60.340 52.381 16.75 9.70 30.44 5.01
446 477 1.340308 CCTTCATGATGAGGTGGCACA 60.340 52.381 20.82 0.00 0.00 4.57
466 497 8.087750 TGGCACACAATTAAATAAGAAAAGAGG 58.912 33.333 0.00 0.00 0.00 3.69
470 501 9.547279 ACACAATTAAATAAGAAAAGAGGGGAT 57.453 29.630 0.00 0.00 0.00 3.85
483 514 9.972106 AGAAAAGAGGGGATTTGATATCATATC 57.028 33.333 21.45 21.45 34.80 1.63
522 553 9.891828 CACATTAAATGTTGTACTACATTGTGT 57.108 29.630 28.32 26.51 45.44 3.72
527 558 5.605564 TGTTGTACTACATTGTGTCATGC 57.394 39.130 6.02 0.00 0.00 4.06
528 559 5.059833 TGTTGTACTACATTGTGTCATGCA 58.940 37.500 6.02 0.00 0.00 3.96
529 560 5.704978 TGTTGTACTACATTGTGTCATGCAT 59.295 36.000 6.02 0.00 0.00 3.96
530 561 5.799681 TGTACTACATTGTGTCATGCATG 57.200 39.130 21.07 21.07 0.00 4.06
531 562 4.635324 TGTACTACATTGTGTCATGCATGG 59.365 41.667 25.97 10.76 0.00 3.66
532 563 3.689347 ACTACATTGTGTCATGCATGGT 58.311 40.909 25.97 15.83 0.00 3.55
533 564 4.842574 ACTACATTGTGTCATGCATGGTA 58.157 39.130 25.97 16.09 0.00 3.25
534 565 5.439721 ACTACATTGTGTCATGCATGGTAT 58.560 37.500 25.97 9.84 0.00 2.73
535 566 5.887598 ACTACATTGTGTCATGCATGGTATT 59.112 36.000 25.97 9.82 0.00 1.89
536 567 7.053498 ACTACATTGTGTCATGCATGGTATTA 58.947 34.615 25.97 10.07 0.00 0.98
537 568 6.772360 ACATTGTGTCATGCATGGTATTAA 57.228 33.333 25.97 14.85 0.00 1.40
538 569 7.167924 ACATTGTGTCATGCATGGTATTAAA 57.832 32.000 25.97 13.38 0.00 1.52
539 570 7.784037 ACATTGTGTCATGCATGGTATTAAAT 58.216 30.769 25.97 14.84 0.00 1.40
540 571 7.707464 ACATTGTGTCATGCATGGTATTAAATG 59.293 33.333 25.97 24.46 0.00 2.32
541 572 7.401955 TTGTGTCATGCATGGTATTAAATGA 57.598 32.000 25.97 0.63 0.00 2.57
542 573 7.030075 TGTGTCATGCATGGTATTAAATGAG 57.970 36.000 25.97 0.00 0.00 2.90
543 574 6.827762 TGTGTCATGCATGGTATTAAATGAGA 59.172 34.615 25.97 0.00 0.00 3.27
544 575 7.134815 GTGTCATGCATGGTATTAAATGAGAC 58.865 38.462 25.97 12.30 33.16 3.36
545 576 6.827762 TGTCATGCATGGTATTAAATGAGACA 59.172 34.615 25.97 14.64 33.36 3.41
546 577 7.338957 TGTCATGCATGGTATTAAATGAGACAA 59.661 33.333 25.97 0.00 33.11 3.18
547 578 8.355169 GTCATGCATGGTATTAAATGAGACAAT 58.645 33.333 25.97 0.00 0.00 2.71
548 579 8.570488 TCATGCATGGTATTAAATGAGACAATC 58.430 33.333 25.97 0.00 0.00 2.67
549 580 8.573885 CATGCATGGTATTAAATGAGACAATCT 58.426 33.333 19.40 0.00 0.00 2.40
550 581 9.797642 ATGCATGGTATTAAATGAGACAATCTA 57.202 29.630 0.00 0.00 0.00 1.98
551 582 9.625747 TGCATGGTATTAAATGAGACAATCTAA 57.374 29.630 0.00 0.00 0.00 2.10
560 591 7.688918 AAATGAGACAATCTAAGATCTCCCT 57.311 36.000 0.00 0.00 37.40 4.20
561 592 7.688918 AATGAGACAATCTAAGATCTCCCTT 57.311 36.000 0.00 0.00 37.40 3.95
562 593 7.688918 ATGAGACAATCTAAGATCTCCCTTT 57.311 36.000 0.00 0.00 37.40 3.11
563 594 6.882656 TGAGACAATCTAAGATCTCCCTTTG 58.117 40.000 0.00 1.48 37.40 2.77
564 595 6.441924 TGAGACAATCTAAGATCTCCCTTTGT 59.558 38.462 11.59 11.59 37.40 2.83
565 596 7.038017 TGAGACAATCTAAGATCTCCCTTTGTT 60.038 37.037 12.52 6.07 37.40 2.83
566 597 7.694093 AGACAATCTAAGATCTCCCTTTGTTT 58.306 34.615 12.52 6.97 0.00 2.83
567 598 8.166726 AGACAATCTAAGATCTCCCTTTGTTTT 58.833 33.333 12.52 5.35 0.00 2.43
568 599 8.712228 ACAATCTAAGATCTCCCTTTGTTTTT 57.288 30.769 0.00 0.00 0.00 1.94
569 600 8.579863 ACAATCTAAGATCTCCCTTTGTTTTTG 58.420 33.333 0.00 0.00 0.00 2.44
570 601 8.579863 CAATCTAAGATCTCCCTTTGTTTTTGT 58.420 33.333 0.00 0.00 0.00 2.83
571 602 8.712228 ATCTAAGATCTCCCTTTGTTTTTGTT 57.288 30.769 0.00 0.00 0.00 2.83
572 603 8.533569 TCTAAGATCTCCCTTTGTTTTTGTTT 57.466 30.769 0.00 0.00 0.00 2.83
573 604 9.635404 TCTAAGATCTCCCTTTGTTTTTGTTTA 57.365 29.630 0.00 0.00 0.00 2.01
574 605 9.678941 CTAAGATCTCCCTTTGTTTTTGTTTAC 57.321 33.333 0.00 0.00 0.00 2.01
575 606 7.654022 AGATCTCCCTTTGTTTTTGTTTACA 57.346 32.000 0.00 0.00 0.00 2.41
576 607 8.073467 AGATCTCCCTTTGTTTTTGTTTACAA 57.927 30.769 0.00 0.00 32.76 2.41
577 608 8.197439 AGATCTCCCTTTGTTTTTGTTTACAAG 58.803 33.333 0.00 0.00 37.15 3.16
578 609 7.234661 TCTCCCTTTGTTTTTGTTTACAAGT 57.765 32.000 0.00 0.00 37.15 3.16
579 610 7.317390 TCTCCCTTTGTTTTTGTTTACAAGTC 58.683 34.615 0.00 0.00 37.15 3.01
580 611 6.399743 TCCCTTTGTTTTTGTTTACAAGTCC 58.600 36.000 0.00 0.00 37.15 3.85
581 612 6.211785 TCCCTTTGTTTTTGTTTACAAGTCCT 59.788 34.615 0.00 0.00 37.15 3.85
582 613 6.312672 CCCTTTGTTTTTGTTTACAAGTCCTG 59.687 38.462 0.00 0.00 37.15 3.86
583 614 6.183360 CCTTTGTTTTTGTTTACAAGTCCTGC 60.183 38.462 0.00 0.00 37.15 4.85
584 615 5.392767 TGTTTTTGTTTACAAGTCCTGCA 57.607 34.783 0.00 0.00 37.15 4.41
585 616 5.164954 TGTTTTTGTTTACAAGTCCTGCAC 58.835 37.500 0.00 0.00 37.15 4.57
586 617 3.684103 TTTGTTTACAAGTCCTGCACG 57.316 42.857 0.00 0.00 37.15 5.34
587 618 2.319136 TGTTTACAAGTCCTGCACGT 57.681 45.000 0.00 0.00 0.00 4.49
588 619 3.455990 TGTTTACAAGTCCTGCACGTA 57.544 42.857 0.00 0.00 0.00 3.57
589 620 3.997762 TGTTTACAAGTCCTGCACGTAT 58.002 40.909 0.00 0.00 0.00 3.06
590 621 5.136816 TGTTTACAAGTCCTGCACGTATA 57.863 39.130 0.00 0.00 0.00 1.47
591 622 4.925054 TGTTTACAAGTCCTGCACGTATAC 59.075 41.667 0.00 0.00 0.00 1.47
592 623 2.667473 ACAAGTCCTGCACGTATACC 57.333 50.000 0.00 0.00 0.00 2.73
593 624 2.176889 ACAAGTCCTGCACGTATACCT 58.823 47.619 0.00 0.00 0.00 3.08
594 625 3.359033 ACAAGTCCTGCACGTATACCTA 58.641 45.455 0.00 0.00 0.00 3.08
595 626 3.380637 ACAAGTCCTGCACGTATACCTAG 59.619 47.826 0.00 0.00 0.00 3.02
596 627 2.584236 AGTCCTGCACGTATACCTAGG 58.416 52.381 7.41 7.41 0.00 3.02
597 628 2.091994 AGTCCTGCACGTATACCTAGGT 60.092 50.000 20.57 20.57 0.00 3.08
598 629 2.692041 GTCCTGCACGTATACCTAGGTT 59.308 50.000 22.11 10.62 0.00 3.50
599 630 3.885297 GTCCTGCACGTATACCTAGGTTA 59.115 47.826 22.11 9.58 0.00 2.85
600 631 4.522022 GTCCTGCACGTATACCTAGGTTAT 59.478 45.833 22.11 13.54 0.00 1.89
601 632 4.763793 TCCTGCACGTATACCTAGGTTATC 59.236 45.833 22.11 9.56 0.00 1.75
602 633 4.521639 CCTGCACGTATACCTAGGTTATCA 59.478 45.833 22.11 1.21 0.00 2.15
603 634 5.335740 CCTGCACGTATACCTAGGTTATCAG 60.336 48.000 22.11 15.95 0.00 2.90
604 635 5.135383 TGCACGTATACCTAGGTTATCAGT 58.865 41.667 22.11 11.43 0.00 3.41
605 636 5.595542 TGCACGTATACCTAGGTTATCAGTT 59.404 40.000 22.11 0.00 0.00 3.16
606 637 6.097270 TGCACGTATACCTAGGTTATCAGTTT 59.903 38.462 22.11 0.00 0.00 2.66
607 638 6.982724 GCACGTATACCTAGGTTATCAGTTTT 59.017 38.462 22.11 0.00 0.00 2.43
608 639 8.137437 GCACGTATACCTAGGTTATCAGTTTTA 58.863 37.037 22.11 0.00 0.00 1.52
614 645 6.896883 ACCTAGGTTATCAGTTTTATCACCC 58.103 40.000 9.21 0.00 0.00 4.61
630 661 2.912956 TCACCCTAAGAGCAACTCCAAT 59.087 45.455 0.00 0.00 0.00 3.16
728 759 0.326595 TTAGATTTGGGTCGGCAGCA 59.673 50.000 0.00 0.00 0.00 4.41
782 813 1.302366 CGCTTTAGATCATGCCAGCA 58.698 50.000 0.00 0.00 0.00 4.41
975 1007 1.306141 TCGTCTTGCCCCCTCTCAT 60.306 57.895 0.00 0.00 0.00 2.90
1005 1037 1.301637 CCTGTGCGTCACCATGTCA 60.302 57.895 7.38 0.00 32.73 3.58
1235 5645 2.841988 GGATCTGGCGCCTCTCCT 60.842 66.667 29.70 7.68 0.00 3.69
1283 5740 4.100084 CCACCAGAGGCGGATGCA 62.100 66.667 0.00 0.00 45.35 3.96
1321 5778 0.955428 GATGGACGTGCAAGCCTTGA 60.955 55.000 15.51 0.00 0.00 3.02
1692 6212 2.899838 GTGGAGGTTGTGCACGCA 60.900 61.111 13.13 0.00 37.80 5.24
1740 6267 3.371097 ATCTTGTGTCCGCGCCGAT 62.371 57.895 0.00 0.00 0.00 4.18
1767 6294 1.981853 GGCTCAAAAATGGGCCGGA 60.982 57.895 5.05 0.00 35.08 5.14
1899 6426 3.026694 GCCCCATTGAAGTTGCTCTAAT 58.973 45.455 0.00 0.00 0.00 1.73
1902 6429 6.003950 GCCCCATTGAAGTTGCTCTAATATA 58.996 40.000 0.00 0.00 0.00 0.86
1903 6430 6.490040 GCCCCATTGAAGTTGCTCTAATATAA 59.510 38.462 0.00 0.00 0.00 0.98
1904 6431 7.014230 GCCCCATTGAAGTTGCTCTAATATAAA 59.986 37.037 0.00 0.00 0.00 1.40
1905 6432 8.352942 CCCCATTGAAGTTGCTCTAATATAAAC 58.647 37.037 0.00 0.00 0.00 2.01
1906 6433 9.125026 CCCATTGAAGTTGCTCTAATATAAACT 57.875 33.333 0.00 0.00 32.60 2.66
2020 6547 9.394477 GGTTAAATTGATGATTTAAGGATACGC 57.606 33.333 4.65 0.00 45.86 4.42
2021 6548 9.103048 GTTAAATTGATGATTTAAGGATACGCG 57.897 33.333 3.53 3.53 45.86 6.01
2022 6549 4.725556 TTGATGATTTAAGGATACGCGC 57.274 40.909 5.73 0.00 46.39 6.86
2023 6550 3.723260 TGATGATTTAAGGATACGCGCA 58.277 40.909 5.73 0.00 46.39 6.09
2024 6551 3.493129 TGATGATTTAAGGATACGCGCAC 59.507 43.478 5.73 0.00 46.39 5.34
2026 6553 0.580104 ATTTAAGGATACGCGCACGC 59.420 50.000 5.73 4.64 45.53 5.34
2027 6554 1.422950 TTTAAGGATACGCGCACGCC 61.423 55.000 5.73 2.34 45.53 5.68
2028 6555 3.778360 TAAGGATACGCGCACGCCC 62.778 63.158 5.73 4.68 45.53 6.13
2032 6559 3.761445 GATACGCGCACGCCCTGTA 62.761 63.158 5.73 6.59 45.53 2.74
2033 6560 3.359515 ATACGCGCACGCCCTGTAA 62.360 57.895 5.73 0.00 45.53 2.41
2034 6561 2.839043 ATACGCGCACGCCCTGTAAA 62.839 55.000 5.73 0.00 45.53 2.01
2035 6562 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
2036 6563 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
2037 6564 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
2038 6565 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
2039 6566 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
2040 6567 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
2041 6568 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
2042 6569 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
2043 6570 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
2044 6571 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
2045 6572 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
2046 6573 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
2047 6574 2.763448 CCCTGTAAACTGAGAGAGAGGG 59.237 54.545 0.00 0.00 33.23 4.30
2048 6575 3.564571 CCCTGTAAACTGAGAGAGAGGGA 60.565 52.174 8.74 0.00 41.40 4.20
2049 6576 3.699038 CCTGTAAACTGAGAGAGAGGGAG 59.301 52.174 0.00 0.00 0.00 4.30
2050 6577 4.340617 CTGTAAACTGAGAGAGAGGGAGT 58.659 47.826 0.00 0.00 0.00 3.85
2051 6578 5.502079 CTGTAAACTGAGAGAGAGGGAGTA 58.498 45.833 0.00 0.00 0.00 2.59
2052 6579 5.254901 TGTAAACTGAGAGAGAGGGAGTAC 58.745 45.833 0.00 0.00 0.00 2.73
2053 6580 4.668138 AAACTGAGAGAGAGGGAGTACT 57.332 45.455 0.00 0.00 0.00 2.73
2054 6581 5.782677 AAACTGAGAGAGAGGGAGTACTA 57.217 43.478 0.00 0.00 0.00 1.82
2055 6582 5.782677 AACTGAGAGAGAGGGAGTACTAA 57.217 43.478 0.00 0.00 0.00 2.24
2056 6583 5.106876 ACTGAGAGAGAGGGAGTACTAAC 57.893 47.826 0.00 0.00 0.00 2.34
2057 6584 4.786454 ACTGAGAGAGAGGGAGTACTAACT 59.214 45.833 0.00 0.00 39.21 2.24
2058 6585 5.252164 ACTGAGAGAGAGGGAGTACTAACTT 59.748 44.000 0.00 0.00 35.56 2.66
2059 6586 6.444493 ACTGAGAGAGAGGGAGTACTAACTTA 59.556 42.308 0.00 0.00 35.56 2.24
2060 6587 7.128263 ACTGAGAGAGAGGGAGTACTAACTTAT 59.872 40.741 0.00 0.00 35.56 1.73
2061 6588 7.284074 TGAGAGAGAGGGAGTACTAACTTATG 58.716 42.308 0.00 0.00 35.56 1.90
2062 6589 7.127493 TGAGAGAGAGGGAGTACTAACTTATGA 59.873 40.741 0.00 0.00 35.56 2.15
2063 6590 8.052621 AGAGAGAGGGAGTACTAACTTATGAT 57.947 38.462 0.00 0.00 35.56 2.45
2064 6591 9.173231 AGAGAGAGGGAGTACTAACTTATGATA 57.827 37.037 0.00 0.00 35.56 2.15
2065 6592 9.969001 GAGAGAGGGAGTACTAACTTATGATAT 57.031 37.037 0.00 0.00 35.56 1.63
2100 6627 9.386122 AGGGAAGTAATCTCATTATATGACACT 57.614 33.333 0.00 0.00 35.06 3.55
2117 6644 6.786967 TGACACTAGTCTAAGTTATTCCCC 57.213 41.667 0.00 0.00 45.20 4.81
2118 6645 6.258354 TGACACTAGTCTAAGTTATTCCCCA 58.742 40.000 0.00 0.00 45.20 4.96
2119 6646 6.154021 TGACACTAGTCTAAGTTATTCCCCAC 59.846 42.308 0.00 0.00 45.20 4.61
2120 6647 6.262207 ACACTAGTCTAAGTTATTCCCCACT 58.738 40.000 0.00 0.00 0.00 4.00
2121 6648 7.416731 ACACTAGTCTAAGTTATTCCCCACTA 58.583 38.462 0.00 0.00 0.00 2.74
2122 6649 8.066247 ACACTAGTCTAAGTTATTCCCCACTAT 58.934 37.037 0.00 0.00 0.00 2.12
2123 6650 8.361139 CACTAGTCTAAGTTATTCCCCACTATG 58.639 40.741 0.00 0.00 0.00 2.23
2124 6651 8.287350 ACTAGTCTAAGTTATTCCCCACTATGA 58.713 37.037 0.00 0.00 0.00 2.15
2125 6652 7.362802 AGTCTAAGTTATTCCCCACTATGAC 57.637 40.000 0.00 0.00 0.00 3.06
2126 6653 6.326843 AGTCTAAGTTATTCCCCACTATGACC 59.673 42.308 0.00 0.00 31.22 4.02
2127 6654 6.099269 GTCTAAGTTATTCCCCACTATGACCA 59.901 42.308 0.00 0.00 0.00 4.02
2128 6655 5.373812 AAGTTATTCCCCACTATGACCAG 57.626 43.478 0.00 0.00 0.00 4.00
2129 6656 3.136626 AGTTATTCCCCACTATGACCAGC 59.863 47.826 0.00 0.00 0.00 4.85
2130 6657 1.595311 ATTCCCCACTATGACCAGCA 58.405 50.000 0.00 0.00 0.00 4.41
2131 6658 1.595311 TTCCCCACTATGACCAGCAT 58.405 50.000 0.00 0.00 41.08 3.79
2132 6659 2.487746 TCCCCACTATGACCAGCATA 57.512 50.000 0.00 0.00 38.44 3.14
2133 6660 2.770447 TCCCCACTATGACCAGCATAA 58.230 47.619 0.00 0.00 38.92 1.90
2134 6661 2.705658 TCCCCACTATGACCAGCATAAG 59.294 50.000 0.00 0.00 38.92 1.73
2135 6662 2.439507 CCCCACTATGACCAGCATAAGT 59.560 50.000 0.00 0.00 38.92 2.24
2136 6663 3.117888 CCCCACTATGACCAGCATAAGTT 60.118 47.826 0.00 0.00 38.92 2.66
2137 6664 4.102524 CCCCACTATGACCAGCATAAGTTA 59.897 45.833 0.00 0.00 38.92 2.24
2138 6665 5.397447 CCCCACTATGACCAGCATAAGTTAA 60.397 44.000 0.00 0.00 38.92 2.01
2139 6666 5.760253 CCCACTATGACCAGCATAAGTTAAG 59.240 44.000 0.00 0.00 38.92 1.85
2140 6667 6.349300 CCACTATGACCAGCATAAGTTAAGT 58.651 40.000 0.00 0.00 38.92 2.24
2141 6668 6.258727 CCACTATGACCAGCATAAGTTAAGTG 59.741 42.308 0.00 0.00 38.92 3.16
2142 6669 5.817816 ACTATGACCAGCATAAGTTAAGTGC 59.182 40.000 0.95 0.95 38.92 4.40
2144 6671 5.414789 TGACCAGCATAAGTTAAGTGCTA 57.585 39.130 10.01 0.00 46.67 3.49
2145 6672 5.175859 TGACCAGCATAAGTTAAGTGCTAC 58.824 41.667 10.01 6.61 46.67 3.58
2146 6673 5.046591 TGACCAGCATAAGTTAAGTGCTACT 60.047 40.000 10.01 0.33 46.67 2.57
2147 6674 5.805728 ACCAGCATAAGTTAAGTGCTACTT 58.194 37.500 10.01 6.74 46.67 2.24
2148 6675 6.238648 ACCAGCATAAGTTAAGTGCTACTTT 58.761 36.000 10.01 0.00 46.67 2.66
2149 6676 6.715264 ACCAGCATAAGTTAAGTGCTACTTTT 59.285 34.615 10.01 0.26 46.67 2.27
2150 6677 7.094762 ACCAGCATAAGTTAAGTGCTACTTTTC 60.095 37.037 10.01 2.56 46.67 2.29
2151 6678 7.094805 CCAGCATAAGTTAAGTGCTACTTTTCA 60.095 37.037 10.01 0.00 46.67 2.69
2152 6679 7.746475 CAGCATAAGTTAAGTGCTACTTTTCAC 59.254 37.037 10.01 3.52 46.67 3.18
2153 6680 7.444183 AGCATAAGTTAAGTGCTACTTTTCACA 59.556 33.333 8.87 0.00 46.54 3.58
2154 6681 8.073768 GCATAAGTTAAGTGCTACTTTTCACAA 58.926 33.333 6.82 0.00 39.51 3.33
2155 6682 9.944663 CATAAGTTAAGTGCTACTTTTCACAAA 57.055 29.630 6.82 0.00 39.51 2.83
2220 6747 9.877178 AAATAAATGAGTAAACAAACACACCAA 57.123 25.926 0.00 0.00 0.00 3.67
2221 6748 9.877178 AATAAATGAGTAAACAAACACACCAAA 57.123 25.926 0.00 0.00 0.00 3.28
2251 6778 9.877178 AAATAAATGAGTAAACAAACACACCAA 57.123 25.926 0.00 0.00 0.00 3.67
2252 6779 9.877178 AATAAATGAGTAAACAAACACACCAAA 57.123 25.926 0.00 0.00 0.00 3.28
2253 6780 9.877178 ATAAATGAGTAAACAAACACACCAAAA 57.123 25.926 0.00 0.00 0.00 2.44
2254 6781 8.785329 AAATGAGTAAACAAACACACCAAAAT 57.215 26.923 0.00 0.00 0.00 1.82
2255 6782 7.769272 ATGAGTAAACAAACACACCAAAATG 57.231 32.000 0.00 0.00 0.00 2.32
2256 6783 5.578727 TGAGTAAACAAACACACCAAAATGC 59.421 36.000 0.00 0.00 0.00 3.56
2257 6784 4.564769 AGTAAACAAACACACCAAAATGCG 59.435 37.500 0.00 0.00 0.00 4.73
2258 6785 2.663826 ACAAACACACCAAAATGCGT 57.336 40.000 0.00 0.00 0.00 5.24
2259 6786 2.535331 ACAAACACACCAAAATGCGTC 58.465 42.857 0.00 0.00 0.00 5.19
2260 6787 2.165437 ACAAACACACCAAAATGCGTCT 59.835 40.909 0.00 0.00 0.00 4.18
2261 6788 3.378742 ACAAACACACCAAAATGCGTCTA 59.621 39.130 0.00 0.00 0.00 2.59
2262 6789 4.037446 ACAAACACACCAAAATGCGTCTAT 59.963 37.500 0.00 0.00 0.00 1.98
2263 6790 5.239744 ACAAACACACCAAAATGCGTCTATA 59.760 36.000 0.00 0.00 0.00 1.31
2264 6791 5.545658 AACACACCAAAATGCGTCTATAG 57.454 39.130 0.00 0.00 0.00 1.31
2265 6792 4.827692 ACACACCAAAATGCGTCTATAGA 58.172 39.130 0.00 0.00 0.00 1.98
2266 6793 4.630069 ACACACCAAAATGCGTCTATAGAC 59.370 41.667 21.00 21.00 41.47 2.59
2267 6794 4.629634 CACACCAAAATGCGTCTATAGACA 59.370 41.667 28.00 13.48 44.99 3.41
2268 6795 5.294306 CACACCAAAATGCGTCTATAGACAT 59.706 40.000 28.00 15.01 44.99 3.06
2269 6796 5.523916 ACACCAAAATGCGTCTATAGACATC 59.476 40.000 28.00 19.95 44.99 3.06
2270 6797 5.755375 CACCAAAATGCGTCTATAGACATCT 59.245 40.000 28.00 11.78 44.99 2.90
2271 6798 5.755375 ACCAAAATGCGTCTATAGACATCTG 59.245 40.000 28.00 15.24 44.99 2.90
2272 6799 5.178252 CCAAAATGCGTCTATAGACATCTGG 59.822 44.000 28.00 20.18 44.99 3.86
2273 6800 5.791336 AAATGCGTCTATAGACATCTGGA 57.209 39.130 28.00 15.67 44.99 3.86
2274 6801 5.991933 AATGCGTCTATAGACATCTGGAT 57.008 39.130 28.00 17.00 44.99 3.41
2275 6802 5.574891 ATGCGTCTATAGACATCTGGATC 57.425 43.478 28.00 9.83 44.99 3.36
2276 6803 4.398319 TGCGTCTATAGACATCTGGATCA 58.602 43.478 28.00 11.79 44.99 2.92
2277 6804 4.457257 TGCGTCTATAGACATCTGGATCAG 59.543 45.833 28.00 11.82 44.99 2.90
2278 6805 4.697828 GCGTCTATAGACATCTGGATCAGA 59.302 45.833 28.00 0.00 44.99 3.27
2279 6806 5.182190 GCGTCTATAGACATCTGGATCAGAA 59.818 44.000 28.00 0.00 44.99 3.02
2280 6807 6.294231 GCGTCTATAGACATCTGGATCAGAAA 60.294 42.308 28.00 0.00 44.99 2.52
2281 6808 7.652727 CGTCTATAGACATCTGGATCAGAAAA 58.347 38.462 28.00 0.00 44.99 2.29
2282 6809 7.807433 CGTCTATAGACATCTGGATCAGAAAAG 59.193 40.741 28.00 6.01 44.99 2.27
2283 6810 8.855110 GTCTATAGACATCTGGATCAGAAAAGA 58.145 37.037 24.97 0.00 44.18 2.52
2284 6811 9.076781 TCTATAGACATCTGGATCAGAAAAGAG 57.923 37.037 0.00 0.00 44.04 2.85
2285 6812 7.673641 ATAGACATCTGGATCAGAAAAGAGT 57.326 36.000 1.53 0.00 44.04 3.24
2286 6813 6.371595 AGACATCTGGATCAGAAAAGAGTT 57.628 37.500 1.53 0.00 44.04 3.01
2287 6814 7.487822 AGACATCTGGATCAGAAAAGAGTTA 57.512 36.000 1.53 0.00 44.04 2.24
2288 6815 7.555087 AGACATCTGGATCAGAAAAGAGTTAG 58.445 38.462 1.53 0.00 44.04 2.34
2289 6816 7.398618 AGACATCTGGATCAGAAAAGAGTTAGA 59.601 37.037 1.53 0.00 44.04 2.10
2290 6817 7.911651 ACATCTGGATCAGAAAAGAGTTAGAA 58.088 34.615 1.53 0.00 44.04 2.10
2291 6818 7.821846 ACATCTGGATCAGAAAAGAGTTAGAAC 59.178 37.037 1.53 0.00 44.04 3.01
2292 6819 7.303182 TCTGGATCAGAAAAGAGTTAGAACA 57.697 36.000 0.00 0.00 37.57 3.18
2293 6820 7.911651 TCTGGATCAGAAAAGAGTTAGAACAT 58.088 34.615 0.00 0.00 37.57 2.71
2294 6821 8.037758 TCTGGATCAGAAAAGAGTTAGAACATC 58.962 37.037 0.00 0.00 37.57 3.06
2295 6822 7.106239 TGGATCAGAAAAGAGTTAGAACATCC 58.894 38.462 0.00 0.00 0.00 3.51
2296 6823 7.038017 TGGATCAGAAAAGAGTTAGAACATCCT 60.038 37.037 0.00 0.00 0.00 3.24
2297 6824 8.478877 GGATCAGAAAAGAGTTAGAACATCCTA 58.521 37.037 0.00 0.00 0.00 2.94
2305 6832 9.877178 AAAGAGTTAGAACATCCTATACTTGTG 57.123 33.333 0.00 0.00 0.00 3.33
2306 6833 8.824756 AGAGTTAGAACATCCTATACTTGTGA 57.175 34.615 0.00 0.00 0.00 3.58
2307 6834 9.256228 AGAGTTAGAACATCCTATACTTGTGAA 57.744 33.333 0.00 0.00 0.00 3.18
2308 6835 9.303537 GAGTTAGAACATCCTATACTTGTGAAC 57.696 37.037 0.00 0.00 0.00 3.18
2309 6836 7.974501 AGTTAGAACATCCTATACTTGTGAACG 59.025 37.037 0.00 0.00 0.00 3.95
2310 6837 5.661458 AGAACATCCTATACTTGTGAACGG 58.339 41.667 0.00 0.00 0.00 4.44
2311 6838 5.187186 AGAACATCCTATACTTGTGAACGGT 59.813 40.000 0.00 0.00 0.00 4.83
2312 6839 4.755411 ACATCCTATACTTGTGAACGGTG 58.245 43.478 0.00 0.00 0.00 4.94
2313 6840 3.241067 TCCTATACTTGTGAACGGTGC 57.759 47.619 0.00 0.00 0.00 5.01
2314 6841 1.924524 CCTATACTTGTGAACGGTGCG 59.075 52.381 0.00 0.00 0.00 5.34
2315 6842 2.416296 CCTATACTTGTGAACGGTGCGA 60.416 50.000 0.00 0.00 0.00 5.10
2316 6843 1.710013 ATACTTGTGAACGGTGCGAG 58.290 50.000 0.00 0.00 0.00 5.03
2317 6844 0.386476 TACTTGTGAACGGTGCGAGT 59.614 50.000 0.00 0.86 0.00 4.18
2318 6845 0.386476 ACTTGTGAACGGTGCGAGTA 59.614 50.000 0.00 0.00 0.00 2.59
2319 6846 0.782384 CTTGTGAACGGTGCGAGTAC 59.218 55.000 0.00 0.00 0.00 2.73
2320 6847 0.386476 TTGTGAACGGTGCGAGTACT 59.614 50.000 0.00 0.00 0.00 2.73
2321 6848 1.237533 TGTGAACGGTGCGAGTACTA 58.762 50.000 0.00 0.00 0.00 1.82
2322 6849 1.069022 TGTGAACGGTGCGAGTACTAC 60.069 52.381 0.00 0.00 0.00 2.73
2323 6850 0.166597 TGAACGGTGCGAGTACTACG 59.833 55.000 0.00 2.74 0.00 3.51
2324 6851 0.166814 GAACGGTGCGAGTACTACGT 59.833 55.000 13.65 0.00 35.95 3.57
2325 6852 0.593128 AACGGTGCGAGTACTACGTT 59.407 50.000 12.79 12.79 39.38 3.99
2326 6853 1.438651 ACGGTGCGAGTACTACGTTA 58.561 50.000 13.65 4.21 0.00 3.18
2327 6854 2.009774 ACGGTGCGAGTACTACGTTAT 58.990 47.619 13.65 0.00 0.00 1.89
2328 6855 2.030946 ACGGTGCGAGTACTACGTTATC 59.969 50.000 13.65 5.84 0.00 1.75
2329 6856 2.030823 CGGTGCGAGTACTACGTTATCA 59.969 50.000 13.65 3.80 0.00 2.15
2330 6857 3.485711 CGGTGCGAGTACTACGTTATCAA 60.486 47.826 13.65 0.00 0.00 2.57
2331 6858 4.604976 GGTGCGAGTACTACGTTATCAAT 58.395 43.478 13.65 0.00 0.00 2.57
2332 6859 5.039333 GGTGCGAGTACTACGTTATCAATT 58.961 41.667 13.65 0.00 0.00 2.32
2333 6860 5.517770 GGTGCGAGTACTACGTTATCAATTT 59.482 40.000 13.65 0.00 0.00 1.82
2334 6861 6.692681 GGTGCGAGTACTACGTTATCAATTTA 59.307 38.462 13.65 0.00 0.00 1.40
2335 6862 7.220683 GGTGCGAGTACTACGTTATCAATTTAA 59.779 37.037 13.65 0.00 0.00 1.52
2336 6863 8.749499 GTGCGAGTACTACGTTATCAATTTAAT 58.251 33.333 13.65 0.00 0.00 1.40
2337 6864 9.304731 TGCGAGTACTACGTTATCAATTTAATT 57.695 29.630 13.65 0.00 0.00 1.40
2361 6888 5.663795 ATCATTTCATCGTCTGTATGTGC 57.336 39.130 0.00 0.00 0.00 4.57
2362 6889 4.758688 TCATTTCATCGTCTGTATGTGCT 58.241 39.130 0.00 0.00 0.00 4.40
2363 6890 4.567959 TCATTTCATCGTCTGTATGTGCTG 59.432 41.667 0.00 0.00 0.00 4.41
2364 6891 1.926561 TCATCGTCTGTATGTGCTGC 58.073 50.000 0.00 0.00 0.00 5.25
2365 6892 0.933097 CATCGTCTGTATGTGCTGCC 59.067 55.000 0.00 0.00 0.00 4.85
2366 6893 0.528466 ATCGTCTGTATGTGCTGCCG 60.528 55.000 0.00 0.00 0.00 5.69
2367 6894 1.446099 CGTCTGTATGTGCTGCCGT 60.446 57.895 0.00 0.00 0.00 5.68
2368 6895 1.686566 CGTCTGTATGTGCTGCCGTG 61.687 60.000 0.00 0.00 0.00 4.94
2369 6896 1.079197 TCTGTATGTGCTGCCGTGG 60.079 57.895 0.00 0.00 0.00 4.94
2370 6897 1.375908 CTGTATGTGCTGCCGTGGT 60.376 57.895 0.00 0.00 0.00 4.16
2371 6898 1.361668 CTGTATGTGCTGCCGTGGTC 61.362 60.000 0.00 0.00 0.00 4.02
2372 6899 1.079127 GTATGTGCTGCCGTGGTCT 60.079 57.895 0.00 0.00 0.00 3.85
2373 6900 1.084370 GTATGTGCTGCCGTGGTCTC 61.084 60.000 0.00 0.00 0.00 3.36
2374 6901 1.257750 TATGTGCTGCCGTGGTCTCT 61.258 55.000 0.00 0.00 0.00 3.10
2375 6902 2.031163 GTGCTGCCGTGGTCTCTT 59.969 61.111 0.00 0.00 0.00 2.85
2376 6903 1.598130 GTGCTGCCGTGGTCTCTTT 60.598 57.895 0.00 0.00 0.00 2.52
2377 6904 0.320421 GTGCTGCCGTGGTCTCTTTA 60.320 55.000 0.00 0.00 0.00 1.85
2378 6905 0.613260 TGCTGCCGTGGTCTCTTTAT 59.387 50.000 0.00 0.00 0.00 1.40
2379 6906 1.003118 TGCTGCCGTGGTCTCTTTATT 59.997 47.619 0.00 0.00 0.00 1.40
2380 6907 1.666189 GCTGCCGTGGTCTCTTTATTC 59.334 52.381 0.00 0.00 0.00 1.75
2381 6908 1.927174 CTGCCGTGGTCTCTTTATTCG 59.073 52.381 0.00 0.00 0.00 3.34
2382 6909 0.651031 GCCGTGGTCTCTTTATTCGC 59.349 55.000 0.00 0.00 0.00 4.70
2383 6910 2.004583 CCGTGGTCTCTTTATTCGCA 57.995 50.000 0.00 0.00 0.00 5.10
2384 6911 1.927174 CCGTGGTCTCTTTATTCGCAG 59.073 52.381 0.00 0.00 0.00 5.18
2385 6912 1.927174 CGTGGTCTCTTTATTCGCAGG 59.073 52.381 0.00 0.00 0.00 4.85
2386 6913 2.674177 CGTGGTCTCTTTATTCGCAGGT 60.674 50.000 0.00 0.00 0.00 4.00
2387 6914 2.673368 GTGGTCTCTTTATTCGCAGGTG 59.327 50.000 0.00 0.00 0.00 4.00
2388 6915 2.565391 TGGTCTCTTTATTCGCAGGTGA 59.435 45.455 0.00 0.00 0.00 4.02
2389 6916 3.190874 GGTCTCTTTATTCGCAGGTGAG 58.809 50.000 0.00 0.00 0.00 3.51
2390 6917 3.190874 GTCTCTTTATTCGCAGGTGAGG 58.809 50.000 0.00 0.00 0.00 3.86
2391 6918 2.168521 TCTCTTTATTCGCAGGTGAGGG 59.831 50.000 0.00 0.00 0.00 4.30
2392 6919 2.168521 CTCTTTATTCGCAGGTGAGGGA 59.831 50.000 0.00 0.00 0.00 4.20
2393 6920 2.771943 TCTTTATTCGCAGGTGAGGGAT 59.228 45.455 0.00 0.00 0.00 3.85
2394 6921 2.620251 TTATTCGCAGGTGAGGGATG 57.380 50.000 0.00 0.00 0.00 3.51
2395 6922 1.788229 TATTCGCAGGTGAGGGATGA 58.212 50.000 0.00 0.00 0.00 2.92
2396 6923 1.135094 ATTCGCAGGTGAGGGATGAT 58.865 50.000 0.00 0.00 0.00 2.45
2397 6924 1.788229 TTCGCAGGTGAGGGATGATA 58.212 50.000 0.00 0.00 0.00 2.15
2398 6925 2.015456 TCGCAGGTGAGGGATGATAT 57.985 50.000 0.00 0.00 0.00 1.63
2399 6926 1.895798 TCGCAGGTGAGGGATGATATC 59.104 52.381 0.00 0.00 0.00 1.63
2400 6927 1.403382 CGCAGGTGAGGGATGATATCG 60.403 57.143 0.00 0.00 0.00 2.92
2401 6928 1.895798 GCAGGTGAGGGATGATATCGA 59.104 52.381 0.00 0.00 0.00 3.59
2402 6929 2.094286 GCAGGTGAGGGATGATATCGAG 60.094 54.545 0.00 0.00 0.00 4.04
2403 6930 2.094286 CAGGTGAGGGATGATATCGAGC 60.094 54.545 0.00 0.00 0.00 5.03
2404 6931 1.895798 GGTGAGGGATGATATCGAGCA 59.104 52.381 0.00 0.00 0.00 4.26
2405 6932 2.094286 GGTGAGGGATGATATCGAGCAG 60.094 54.545 0.00 0.00 0.00 4.24
2406 6933 2.560542 GTGAGGGATGATATCGAGCAGT 59.439 50.000 0.00 0.00 0.00 4.40
2407 6934 3.006323 GTGAGGGATGATATCGAGCAGTT 59.994 47.826 0.00 0.00 0.00 3.16
2408 6935 3.006217 TGAGGGATGATATCGAGCAGTTG 59.994 47.826 0.00 0.00 0.00 3.16
2409 6936 2.301296 AGGGATGATATCGAGCAGTTGG 59.699 50.000 0.00 0.00 0.00 3.77
2410 6937 2.037772 GGGATGATATCGAGCAGTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
2411 6938 3.495100 GGGATGATATCGAGCAGTTGGTT 60.495 47.826 0.00 0.00 0.00 3.67
2412 6939 3.496130 GGATGATATCGAGCAGTTGGTTG 59.504 47.826 0.00 0.00 0.00 3.77
2413 6940 3.885724 TGATATCGAGCAGTTGGTTGA 57.114 42.857 3.91 3.91 39.91 3.18
2414 6941 3.521560 TGATATCGAGCAGTTGGTTGAC 58.478 45.455 3.52 0.00 38.60 3.18
2415 6942 1.990799 TATCGAGCAGTTGGTTGACG 58.009 50.000 3.52 0.00 38.60 4.35
2416 6943 0.317160 ATCGAGCAGTTGGTTGACGA 59.683 50.000 3.52 0.00 38.60 4.20
2417 6944 0.317160 TCGAGCAGTTGGTTGACGAT 59.683 50.000 0.00 0.00 31.53 3.73
2418 6945 0.439985 CGAGCAGTTGGTTGACGATG 59.560 55.000 0.00 0.00 0.00 3.84
2419 6946 1.795768 GAGCAGTTGGTTGACGATGA 58.204 50.000 0.00 0.00 0.00 2.92
2420 6947 1.461127 GAGCAGTTGGTTGACGATGAC 59.539 52.381 0.00 0.00 0.00 3.06
2421 6948 1.202639 AGCAGTTGGTTGACGATGACA 60.203 47.619 0.00 0.00 0.00 3.58
2422 6949 1.069906 GCAGTTGGTTGACGATGACAC 60.070 52.381 0.00 0.00 0.00 3.67
2423 6950 1.192312 CAGTTGGTTGACGATGACACG 59.808 52.381 0.00 0.00 39.31 4.49
2424 6951 0.511221 GTTGGTTGACGATGACACGG 59.489 55.000 0.00 0.00 37.61 4.94
2425 6952 0.389757 TTGGTTGACGATGACACGGA 59.610 50.000 0.00 0.00 37.61 4.69
2426 6953 0.606096 TGGTTGACGATGACACGGAT 59.394 50.000 0.00 0.00 37.61 4.18
2427 6954 1.819903 TGGTTGACGATGACACGGATA 59.180 47.619 0.00 0.00 37.61 2.59
2428 6955 2.429250 TGGTTGACGATGACACGGATAT 59.571 45.455 0.00 0.00 37.61 1.63
2429 6956 2.794910 GGTTGACGATGACACGGATATG 59.205 50.000 0.00 0.00 37.61 1.78
2430 6957 3.444916 GTTGACGATGACACGGATATGT 58.555 45.455 0.00 0.00 37.61 2.29
2474 7001 3.904136 CTTGCGTTTCAAGGAGTCAAT 57.096 42.857 0.00 0.00 46.50 2.57
2490 7017 5.292101 GGAGTCAATGAGTCATCGGTTAAAG 59.708 44.000 18.61 0.00 34.00 1.85
2495 7022 3.921677 TGAGTCATCGGTTAAAGTGGAC 58.078 45.455 0.00 0.00 0.00 4.02
2504 7031 3.628487 CGGTTAAAGTGGACTCCAACAAA 59.372 43.478 0.00 0.00 34.18 2.83
2549 7076 7.760607 AGGATGAGAAGTATGTCACCTATAGA 58.239 38.462 0.00 0.00 32.48 1.98
2562 7089 8.768501 TGTCACCTATAGATAATGTGTCTTCT 57.231 34.615 0.00 0.00 0.00 2.85
2574 7101 6.530019 AATGTGTCTTCTTTTCTGTGGTTT 57.470 33.333 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.536554 AAACTTCACATGCGAGTAGATTG 57.463 39.130 0.00 0.00 0.00 2.67
109 113 6.778821 TCTGACCTAAGATTCATCCAAACAA 58.221 36.000 0.00 0.00 0.00 2.83
114 118 6.566079 ACAATCTGACCTAAGATTCATCCA 57.434 37.500 0.00 0.00 43.50 3.41
128 132 6.147164 TCGTGGTGAAAGAAATACAATCTGAC 59.853 38.462 0.00 0.00 0.00 3.51
131 135 7.687941 ATTCGTGGTGAAAGAAATACAATCT 57.312 32.000 0.00 0.00 40.71 2.40
134 138 7.731882 TGTATTCGTGGTGAAAGAAATACAA 57.268 32.000 0.00 0.00 40.71 2.41
176 181 4.874970 TCTACTCCCGTGTGAAGTTTTAC 58.125 43.478 0.00 0.00 0.00 2.01
194 199 4.016444 TCAAACCTGAATGCCCAATCTAC 58.984 43.478 0.00 0.00 0.00 2.59
290 296 2.158579 ACAACGGAAAATACACCTGGGT 60.159 45.455 0.00 0.00 0.00 4.51
291 297 2.510613 ACAACGGAAAATACACCTGGG 58.489 47.619 0.00 0.00 0.00 4.45
292 298 3.566322 TCAACAACGGAAAATACACCTGG 59.434 43.478 0.00 0.00 0.00 4.45
293 299 4.274950 AGTCAACAACGGAAAATACACCTG 59.725 41.667 0.00 0.00 0.00 4.00
294 300 4.457466 AGTCAACAACGGAAAATACACCT 58.543 39.130 0.00 0.00 0.00 4.00
295 301 4.823790 AGTCAACAACGGAAAATACACC 57.176 40.909 0.00 0.00 0.00 4.16
331 356 6.011628 TGGAATTAAATGAGGAAAGAGAGGGT 60.012 38.462 0.00 0.00 0.00 4.34
343 368 8.593492 TGACGAGTGATATGGAATTAAATGAG 57.407 34.615 0.00 0.00 0.00 2.90
356 381 8.873830 CAACTAGACAATTTTGACGAGTGATAT 58.126 33.333 8.63 0.00 38.33 1.63
358 383 6.147821 CCAACTAGACAATTTTGACGAGTGAT 59.852 38.462 8.63 0.00 38.33 3.06
359 384 5.465390 CCAACTAGACAATTTTGACGAGTGA 59.535 40.000 8.63 0.00 38.33 3.41
360 385 5.679906 CCAACTAGACAATTTTGACGAGTG 58.320 41.667 8.63 4.85 38.33 3.51
365 392 5.630680 CACATGCCAACTAGACAATTTTGAC 59.369 40.000 0.00 0.00 0.00 3.18
367 394 4.925054 CCACATGCCAACTAGACAATTTTG 59.075 41.667 0.00 0.00 0.00 2.44
372 399 1.702401 TCCCACATGCCAACTAGACAA 59.298 47.619 0.00 0.00 0.00 3.18
388 415 6.787458 ACATGATACCACTTATGATACTCCCA 59.213 38.462 0.00 0.00 0.00 4.37
389 416 7.246171 ACATGATACCACTTATGATACTCCC 57.754 40.000 0.00 0.00 0.00 4.30
390 417 9.809096 CATACATGATACCACTTATGATACTCC 57.191 37.037 0.00 0.00 0.00 3.85
393 420 8.040727 TGGCATACATGATACCACTTATGATAC 58.959 37.037 0.00 0.00 0.00 2.24
394 421 8.144862 TGGCATACATGATACCACTTATGATA 57.855 34.615 0.00 0.00 0.00 2.15
395 422 7.019656 TGGCATACATGATACCACTTATGAT 57.980 36.000 0.00 0.00 0.00 2.45
398 425 6.841601 AGTTGGCATACATGATACCACTTAT 58.158 36.000 0.00 0.00 0.00 1.73
402 429 5.696724 GTCTAGTTGGCATACATGATACCAC 59.303 44.000 0.00 0.00 0.00 4.16
404 431 5.012148 AGGTCTAGTTGGCATACATGATACC 59.988 44.000 0.00 0.00 0.00 2.73
405 432 6.102897 AGGTCTAGTTGGCATACATGATAC 57.897 41.667 0.00 0.00 0.00 2.24
407 434 5.130975 TGAAGGTCTAGTTGGCATACATGAT 59.869 40.000 0.00 0.00 0.00 2.45
408 435 4.469586 TGAAGGTCTAGTTGGCATACATGA 59.530 41.667 0.00 0.00 0.00 3.07
410 437 5.130975 TCATGAAGGTCTAGTTGGCATACAT 59.869 40.000 0.00 0.00 0.00 2.29
411 438 4.469586 TCATGAAGGTCTAGTTGGCATACA 59.530 41.667 0.00 0.00 0.00 2.29
413 440 5.366477 TCATCATGAAGGTCTAGTTGGCATA 59.634 40.000 0.00 0.00 0.00 3.14
414 441 4.164796 TCATCATGAAGGTCTAGTTGGCAT 59.835 41.667 0.00 0.00 0.00 4.40
415 442 3.519107 TCATCATGAAGGTCTAGTTGGCA 59.481 43.478 0.00 0.00 0.00 4.92
418 445 5.114780 CACCTCATCATGAAGGTCTAGTTG 58.885 45.833 15.01 1.51 29.55 3.16
419 446 4.163078 CCACCTCATCATGAAGGTCTAGTT 59.837 45.833 15.01 0.00 29.55 2.24
420 447 3.708631 CCACCTCATCATGAAGGTCTAGT 59.291 47.826 15.01 0.00 29.55 2.57
421 448 3.494048 GCCACCTCATCATGAAGGTCTAG 60.494 52.174 15.01 9.03 29.55 2.43
424 451 1.065199 TGCCACCTCATCATGAAGGTC 60.065 52.381 15.01 7.11 29.55 3.85
425 452 0.994247 TGCCACCTCATCATGAAGGT 59.006 50.000 12.55 12.55 31.26 3.50
426 453 1.340308 TGTGCCACCTCATCATGAAGG 60.340 52.381 11.29 11.29 0.00 3.46
427 454 1.741706 GTGTGCCACCTCATCATGAAG 59.258 52.381 0.00 0.00 0.00 3.02
428 455 1.073603 TGTGTGCCACCTCATCATGAA 59.926 47.619 0.00 0.00 32.73 2.57
429 456 0.691904 TGTGTGCCACCTCATCATGA 59.308 50.000 0.00 0.00 32.73 3.07
430 457 1.536940 TTGTGTGCCACCTCATCATG 58.463 50.000 0.00 0.00 32.73 3.07
434 465 6.663093 TCTTATTTAATTGTGTGCCACCTCAT 59.337 34.615 0.00 0.00 32.73 2.90
438 469 7.870445 TCTTTTCTTATTTAATTGTGTGCCACC 59.130 33.333 0.00 0.00 32.73 4.61
444 475 8.950007 TCCCCTCTTTTCTTATTTAATTGTGT 57.050 30.769 0.00 0.00 0.00 3.72
458 489 9.745018 TGATATGATATCAAATCCCCTCTTTTC 57.255 33.333 12.47 0.00 0.00 2.29
461 492 9.065722 TCATGATATGATATCAAATCCCCTCTT 57.934 33.333 18.08 0.00 33.59 2.85
496 527 9.891828 ACACAATGTAGTACAACATTTAATGTG 57.108 29.630 11.60 13.18 45.54 3.21
502 533 7.083858 GCATGACACAATGTAGTACAACATTT 58.916 34.615 7.16 0.00 45.54 2.32
504 535 5.704978 TGCATGACACAATGTAGTACAACAT 59.295 36.000 7.16 4.35 41.87 2.71
505 536 5.059833 TGCATGACACAATGTAGTACAACA 58.940 37.500 7.16 2.30 0.00 3.33
506 537 5.605564 TGCATGACACAATGTAGTACAAC 57.394 39.130 7.16 0.00 0.00 3.32
507 538 5.123661 CCATGCATGACACAATGTAGTACAA 59.876 40.000 28.31 0.00 0.00 2.41
508 539 4.635324 CCATGCATGACACAATGTAGTACA 59.365 41.667 28.31 5.24 0.00 2.90
509 540 4.635765 ACCATGCATGACACAATGTAGTAC 59.364 41.667 28.31 0.00 0.00 2.73
510 541 4.842574 ACCATGCATGACACAATGTAGTA 58.157 39.130 28.31 0.00 0.00 1.82
511 542 3.689347 ACCATGCATGACACAATGTAGT 58.311 40.909 28.31 9.97 0.00 2.73
512 543 6.381481 AATACCATGCATGACACAATGTAG 57.619 37.500 28.31 9.32 0.00 2.74
513 544 7.872113 TTAATACCATGCATGACACAATGTA 57.128 32.000 28.31 18.19 0.00 2.29
514 545 6.772360 TTAATACCATGCATGACACAATGT 57.228 33.333 28.31 16.65 0.00 2.71
515 546 7.921745 TCATTTAATACCATGCATGACACAATG 59.078 33.333 28.31 22.67 0.00 2.82
516 547 8.009622 TCATTTAATACCATGCATGACACAAT 57.990 30.769 28.31 13.95 0.00 2.71
517 548 7.338957 TCTCATTTAATACCATGCATGACACAA 59.661 33.333 28.31 12.38 0.00 3.33
518 549 6.827762 TCTCATTTAATACCATGCATGACACA 59.172 34.615 28.31 9.83 0.00 3.72
519 550 7.134815 GTCTCATTTAATACCATGCATGACAC 58.865 38.462 28.31 0.00 0.00 3.67
520 551 6.827762 TGTCTCATTTAATACCATGCATGACA 59.172 34.615 28.31 15.44 0.00 3.58
521 552 7.263100 TGTCTCATTTAATACCATGCATGAC 57.737 36.000 28.31 13.05 0.00 3.06
522 553 7.878547 TTGTCTCATTTAATACCATGCATGA 57.121 32.000 28.31 9.57 0.00 3.07
523 554 8.573885 AGATTGTCTCATTTAATACCATGCATG 58.426 33.333 20.19 20.19 0.00 4.06
524 555 8.701908 AGATTGTCTCATTTAATACCATGCAT 57.298 30.769 0.00 0.00 0.00 3.96
525 556 9.625747 TTAGATTGTCTCATTTAATACCATGCA 57.374 29.630 0.00 0.00 0.00 3.96
534 565 9.218525 AGGGAGATCTTAGATTGTCTCATTTAA 57.781 33.333 11.85 0.00 39.02 1.52
535 566 8.789767 AGGGAGATCTTAGATTGTCTCATTTA 57.210 34.615 11.85 0.00 39.02 1.40
536 567 7.688918 AGGGAGATCTTAGATTGTCTCATTT 57.311 36.000 11.85 0.00 39.02 2.32
537 568 7.688918 AAGGGAGATCTTAGATTGTCTCATT 57.311 36.000 11.85 5.07 39.02 2.57
538 569 7.127032 ACAAAGGGAGATCTTAGATTGTCTCAT 59.873 37.037 11.85 0.00 39.02 2.90
539 570 6.441924 ACAAAGGGAGATCTTAGATTGTCTCA 59.558 38.462 11.85 0.00 39.02 3.27
540 571 6.883744 ACAAAGGGAGATCTTAGATTGTCTC 58.116 40.000 0.00 0.00 37.08 3.36
541 572 6.882768 ACAAAGGGAGATCTTAGATTGTCT 57.117 37.500 0.00 0.00 0.00 3.41
542 573 7.929941 AAACAAAGGGAGATCTTAGATTGTC 57.070 36.000 14.35 0.00 0.00 3.18
543 574 8.579863 CAAAAACAAAGGGAGATCTTAGATTGT 58.420 33.333 0.00 4.51 0.00 2.71
544 575 8.579863 ACAAAAACAAAGGGAGATCTTAGATTG 58.420 33.333 0.00 3.88 0.00 2.67
545 576 8.712228 ACAAAAACAAAGGGAGATCTTAGATT 57.288 30.769 0.00 0.00 0.00 2.40
546 577 8.712228 AACAAAAACAAAGGGAGATCTTAGAT 57.288 30.769 0.00 0.00 0.00 1.98
547 578 8.533569 AAACAAAAACAAAGGGAGATCTTAGA 57.466 30.769 0.00 0.00 0.00 2.10
548 579 9.678941 GTAAACAAAAACAAAGGGAGATCTTAG 57.321 33.333 0.00 0.00 0.00 2.18
549 580 9.191479 TGTAAACAAAAACAAAGGGAGATCTTA 57.809 29.630 0.00 0.00 0.00 2.10
550 581 8.073467 TGTAAACAAAAACAAAGGGAGATCTT 57.927 30.769 0.00 0.00 0.00 2.40
551 582 7.654022 TGTAAACAAAAACAAAGGGAGATCT 57.346 32.000 0.00 0.00 0.00 2.75
552 583 7.979537 ACTTGTAAACAAAAACAAAGGGAGATC 59.020 33.333 0.00 0.00 35.32 2.75
553 584 7.847096 ACTTGTAAACAAAAACAAAGGGAGAT 58.153 30.769 0.00 0.00 35.32 2.75
554 585 7.234661 ACTTGTAAACAAAAACAAAGGGAGA 57.765 32.000 0.00 0.00 35.32 3.71
555 586 6.533723 GGACTTGTAAACAAAAACAAAGGGAG 59.466 38.462 0.00 0.00 35.32 4.30
556 587 6.211785 AGGACTTGTAAACAAAAACAAAGGGA 59.788 34.615 0.00 0.00 35.32 4.20
557 588 6.312672 CAGGACTTGTAAACAAAAACAAAGGG 59.687 38.462 0.00 0.00 35.32 3.95
558 589 6.183360 GCAGGACTTGTAAACAAAAACAAAGG 60.183 38.462 0.00 0.00 35.32 3.11
559 590 6.367422 TGCAGGACTTGTAAACAAAAACAAAG 59.633 34.615 0.00 0.00 35.32 2.77
560 591 6.146347 GTGCAGGACTTGTAAACAAAAACAAA 59.854 34.615 0.00 0.00 35.32 2.83
561 592 5.635700 GTGCAGGACTTGTAAACAAAAACAA 59.364 36.000 0.00 0.00 35.15 2.83
562 593 5.164954 GTGCAGGACTTGTAAACAAAAACA 58.835 37.500 0.00 0.00 35.15 2.83
563 594 4.264380 CGTGCAGGACTTGTAAACAAAAAC 59.736 41.667 0.00 0.00 35.15 2.43
564 595 4.082679 ACGTGCAGGACTTGTAAACAAAAA 60.083 37.500 14.38 0.00 35.15 1.94
565 596 3.440872 ACGTGCAGGACTTGTAAACAAAA 59.559 39.130 14.38 0.00 35.15 2.44
566 597 3.011119 ACGTGCAGGACTTGTAAACAAA 58.989 40.909 14.38 0.00 35.15 2.83
567 598 2.634600 ACGTGCAGGACTTGTAAACAA 58.365 42.857 14.38 0.00 0.00 2.83
568 599 2.319136 ACGTGCAGGACTTGTAAACA 57.681 45.000 14.38 0.00 0.00 2.83
569 600 4.328169 GGTATACGTGCAGGACTTGTAAAC 59.672 45.833 14.38 0.06 0.00 2.01
570 601 4.221262 AGGTATACGTGCAGGACTTGTAAA 59.779 41.667 14.38 0.00 0.00 2.01
571 602 3.765511 AGGTATACGTGCAGGACTTGTAA 59.234 43.478 14.38 0.00 0.00 2.41
572 603 3.359033 AGGTATACGTGCAGGACTTGTA 58.641 45.455 14.38 0.00 0.00 2.41
573 604 2.176889 AGGTATACGTGCAGGACTTGT 58.823 47.619 14.38 0.00 0.00 3.16
574 605 2.961526 AGGTATACGTGCAGGACTTG 57.038 50.000 14.38 0.00 0.00 3.16
575 606 2.957006 CCTAGGTATACGTGCAGGACTT 59.043 50.000 14.38 0.00 0.00 3.01
576 607 2.091994 ACCTAGGTATACGTGCAGGACT 60.092 50.000 14.41 5.63 0.00 3.85
577 608 2.305009 ACCTAGGTATACGTGCAGGAC 58.695 52.381 14.41 0.46 0.00 3.85
578 609 2.742428 ACCTAGGTATACGTGCAGGA 57.258 50.000 14.41 0.00 0.00 3.86
579 610 4.521639 TGATAACCTAGGTATACGTGCAGG 59.478 45.833 16.67 10.01 0.00 4.85
580 611 5.241064 ACTGATAACCTAGGTATACGTGCAG 59.759 44.000 16.67 16.62 0.00 4.41
581 612 5.135383 ACTGATAACCTAGGTATACGTGCA 58.865 41.667 16.67 6.15 0.00 4.57
582 613 5.702349 ACTGATAACCTAGGTATACGTGC 57.298 43.478 16.67 1.56 0.00 5.34
588 619 8.657712 GGGTGATAAAACTGATAACCTAGGTAT 58.342 37.037 16.67 9.12 29.39 2.73
589 620 7.847848 AGGGTGATAAAACTGATAACCTAGGTA 59.152 37.037 16.67 4.12 29.39 3.08
590 621 6.677076 AGGGTGATAAAACTGATAACCTAGGT 59.323 38.462 9.21 9.21 29.39 3.08
591 622 7.138054 AGGGTGATAAAACTGATAACCTAGG 57.862 40.000 7.41 7.41 29.39 3.02
592 623 9.765795 CTTAGGGTGATAAAACTGATAACCTAG 57.234 37.037 0.00 0.00 29.39 3.02
593 624 9.496710 TCTTAGGGTGATAAAACTGATAACCTA 57.503 33.333 0.00 0.00 29.39 3.08
594 625 8.388656 TCTTAGGGTGATAAAACTGATAACCT 57.611 34.615 0.00 0.00 29.39 3.50
595 626 7.226918 GCTCTTAGGGTGATAAAACTGATAACC 59.773 40.741 0.00 0.00 0.00 2.85
596 627 7.769044 TGCTCTTAGGGTGATAAAACTGATAAC 59.231 37.037 0.00 0.00 0.00 1.89
597 628 7.857456 TGCTCTTAGGGTGATAAAACTGATAA 58.143 34.615 0.00 0.00 0.00 1.75
598 629 7.432148 TGCTCTTAGGGTGATAAAACTGATA 57.568 36.000 0.00 0.00 0.00 2.15
599 630 6.313519 TGCTCTTAGGGTGATAAAACTGAT 57.686 37.500 0.00 0.00 0.00 2.90
600 631 5.755409 TGCTCTTAGGGTGATAAAACTGA 57.245 39.130 0.00 0.00 0.00 3.41
601 632 5.940470 AGTTGCTCTTAGGGTGATAAAACTG 59.060 40.000 0.00 0.00 0.00 3.16
602 633 6.128138 AGTTGCTCTTAGGGTGATAAAACT 57.872 37.500 0.00 0.00 0.00 2.66
603 634 5.354513 GGAGTTGCTCTTAGGGTGATAAAAC 59.645 44.000 0.00 0.00 0.00 2.43
604 635 5.013704 TGGAGTTGCTCTTAGGGTGATAAAA 59.986 40.000 0.00 0.00 0.00 1.52
605 636 4.534500 TGGAGTTGCTCTTAGGGTGATAAA 59.466 41.667 0.00 0.00 0.00 1.40
606 637 4.101114 TGGAGTTGCTCTTAGGGTGATAA 58.899 43.478 0.00 0.00 0.00 1.75
607 638 3.719871 TGGAGTTGCTCTTAGGGTGATA 58.280 45.455 0.00 0.00 0.00 2.15
608 639 2.551270 TGGAGTTGCTCTTAGGGTGAT 58.449 47.619 0.00 0.00 0.00 3.06
609 640 2.024176 TGGAGTTGCTCTTAGGGTGA 57.976 50.000 0.00 0.00 0.00 4.02
610 641 2.859165 TTGGAGTTGCTCTTAGGGTG 57.141 50.000 0.00 0.00 0.00 4.61
611 642 2.025887 CCATTGGAGTTGCTCTTAGGGT 60.026 50.000 0.00 0.00 0.00 4.34
612 643 2.648059 CCATTGGAGTTGCTCTTAGGG 58.352 52.381 0.00 0.00 0.00 3.53
613 644 2.648059 CCCATTGGAGTTGCTCTTAGG 58.352 52.381 3.62 0.00 0.00 2.69
614 645 2.019984 GCCCATTGGAGTTGCTCTTAG 58.980 52.381 3.62 0.00 0.00 2.18
698 729 1.405463 CCAAATCTAAAAGAGGGCGGC 59.595 52.381 0.00 0.00 0.00 6.53
816 847 0.830648 GCTAGGCCAAAATTTCCCCC 59.169 55.000 5.01 0.00 0.00 5.40
821 852 1.153842 GCGCGCTAGGCCAAAATTT 60.154 52.632 26.67 0.00 38.94 1.82
949 980 3.637273 GGCAAGACGAGTGGGGGT 61.637 66.667 0.00 0.00 0.00 4.95
995 1027 3.954200 AGTATGCACATTGACATGGTGA 58.046 40.909 10.28 0.00 34.27 4.02
1005 1037 2.094258 CGAAGCGTCAAGTATGCACATT 59.906 45.455 0.00 0.00 43.05 2.71
1601 6121 8.244802 GGATACATAGATAGTTCTTGCGTACAT 58.755 37.037 0.00 0.00 33.17 2.29
1673 6193 2.203139 CGTGCACAACCTCCACCA 60.203 61.111 18.64 0.00 0.00 4.17
1692 6212 4.467107 GCCCTCTCTCCTCCCCGT 62.467 72.222 0.00 0.00 0.00 5.28
1715 6242 1.026182 GCGGACACAAGATGGATGCA 61.026 55.000 0.00 0.00 0.00 3.96
1718 6245 1.815421 GCGCGGACACAAGATGGAT 60.815 57.895 8.83 0.00 0.00 3.41
1722 6249 3.371097 ATCGGCGCGGACACAAGAT 62.371 57.895 20.65 0.00 0.00 2.40
1740 6267 2.612471 CCATTTTTGAGCCGGATTTGCA 60.612 45.455 5.05 0.00 0.00 4.08
1994 6521 9.394477 GCGTATCCTTAAATCATCAATTTAACC 57.606 33.333 0.12 0.00 42.29 2.85
1995 6522 9.103048 CGCGTATCCTTAAATCATCAATTTAAC 57.897 33.333 0.00 0.00 42.29 2.01
1996 6523 7.801315 GCGCGTATCCTTAAATCATCAATTTAA 59.199 33.333 8.43 3.68 44.02 1.52
1997 6524 7.041712 TGCGCGTATCCTTAAATCATCAATTTA 60.042 33.333 8.43 0.00 38.53 1.40
1998 6525 6.142817 GCGCGTATCCTTAAATCATCAATTT 58.857 36.000 8.43 0.00 40.67 1.82
1999 6526 5.238432 TGCGCGTATCCTTAAATCATCAATT 59.762 36.000 8.43 0.00 0.00 2.32
2000 6527 4.754618 TGCGCGTATCCTTAAATCATCAAT 59.245 37.500 8.43 0.00 0.00 2.57
2001 6528 4.025229 GTGCGCGTATCCTTAAATCATCAA 60.025 41.667 8.43 0.00 0.00 2.57
2002 6529 3.493129 GTGCGCGTATCCTTAAATCATCA 59.507 43.478 8.43 0.00 0.00 3.07
2003 6530 3.421826 CGTGCGCGTATCCTTAAATCATC 60.422 47.826 12.43 0.00 0.00 2.92
2004 6531 2.475111 CGTGCGCGTATCCTTAAATCAT 59.525 45.455 12.43 0.00 0.00 2.45
2005 6532 1.855978 CGTGCGCGTATCCTTAAATCA 59.144 47.619 12.43 0.00 0.00 2.57
2006 6533 1.396815 GCGTGCGCGTATCCTTAAATC 60.397 52.381 22.18 0.00 40.81 2.17
2007 6534 0.580104 GCGTGCGCGTATCCTTAAAT 59.420 50.000 22.18 0.00 40.81 1.40
2008 6535 1.422950 GGCGTGCGCGTATCCTTAAA 61.423 55.000 22.18 0.00 43.06 1.52
2009 6536 1.879430 GGCGTGCGCGTATCCTTAA 60.879 57.895 22.18 0.00 43.06 1.85
2010 6537 2.278989 GGCGTGCGCGTATCCTTA 60.279 61.111 22.18 0.00 43.06 2.69
2014 6541 3.761445 TACAGGGCGTGCGCGTATC 62.761 63.158 22.18 11.01 43.06 2.24
2015 6542 2.839043 TTTACAGGGCGTGCGCGTAT 62.839 55.000 22.18 4.49 43.06 3.06
2016 6543 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
2017 6544 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
2018 6545 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
2019 6546 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
2020 6547 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
2021 6548 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
2022 6549 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
2023 6550 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
2024 6551 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
2025 6552 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
2026 6553 2.763448 CCCTCTCTCTCAGTTTACAGGG 59.237 54.545 0.00 0.00 33.59 4.45
2027 6554 3.699038 CTCCCTCTCTCTCAGTTTACAGG 59.301 52.174 0.00 0.00 0.00 4.00
2028 6555 4.340617 ACTCCCTCTCTCTCAGTTTACAG 58.659 47.826 0.00 0.00 0.00 2.74
2029 6556 4.390129 ACTCCCTCTCTCTCAGTTTACA 57.610 45.455 0.00 0.00 0.00 2.41
2030 6557 5.503002 AGTACTCCCTCTCTCTCAGTTTAC 58.497 45.833 0.00 0.00 0.00 2.01
2031 6558 5.782677 AGTACTCCCTCTCTCTCAGTTTA 57.217 43.478 0.00 0.00 0.00 2.01
2032 6559 4.668138 AGTACTCCCTCTCTCTCAGTTT 57.332 45.455 0.00 0.00 0.00 2.66
2033 6560 5.252164 AGTTAGTACTCCCTCTCTCTCAGTT 59.748 44.000 0.00 0.00 0.00 3.16
2034 6561 4.786454 AGTTAGTACTCCCTCTCTCTCAGT 59.214 45.833 0.00 0.00 0.00 3.41
2035 6562 5.367945 AGTTAGTACTCCCTCTCTCTCAG 57.632 47.826 0.00 0.00 0.00 3.35
2036 6563 5.782677 AAGTTAGTACTCCCTCTCTCTCA 57.217 43.478 0.00 0.00 31.99 3.27
2037 6564 7.511268 TCATAAGTTAGTACTCCCTCTCTCTC 58.489 42.308 0.00 0.00 31.99 3.20
2038 6565 7.454553 TCATAAGTTAGTACTCCCTCTCTCT 57.545 40.000 0.00 0.00 31.99 3.10
2039 6566 9.969001 ATATCATAAGTTAGTACTCCCTCTCTC 57.031 37.037 0.00 0.00 31.99 3.20
2074 6601 9.386122 AGTGTCATATAATGAGATTACTTCCCT 57.614 33.333 0.00 0.00 40.53 4.20
2091 6618 9.091220 GGGGAATAACTTAGACTAGTGTCATAT 57.909 37.037 0.00 0.00 45.20 1.78
2092 6619 8.063153 TGGGGAATAACTTAGACTAGTGTCATA 58.937 37.037 0.00 0.00 45.20 2.15
2093 6620 6.901300 TGGGGAATAACTTAGACTAGTGTCAT 59.099 38.462 0.00 0.00 45.20 3.06
2094 6621 6.154021 GTGGGGAATAACTTAGACTAGTGTCA 59.846 42.308 0.00 0.00 45.20 3.58
2095 6622 6.380560 AGTGGGGAATAACTTAGACTAGTGTC 59.619 42.308 0.00 0.00 43.22 3.67
2096 6623 6.262207 AGTGGGGAATAACTTAGACTAGTGT 58.738 40.000 0.00 0.00 0.00 3.55
2097 6624 6.793505 AGTGGGGAATAACTTAGACTAGTG 57.206 41.667 0.00 0.00 0.00 2.74
2098 6625 8.287350 TCATAGTGGGGAATAACTTAGACTAGT 58.713 37.037 0.00 0.00 0.00 2.57
2099 6626 8.578151 GTCATAGTGGGGAATAACTTAGACTAG 58.422 40.741 0.00 0.00 31.58 2.57
2100 6627 7.508296 GGTCATAGTGGGGAATAACTTAGACTA 59.492 40.741 0.00 0.00 33.27 2.59
2101 6628 6.326843 GGTCATAGTGGGGAATAACTTAGACT 59.673 42.308 0.00 0.00 33.27 3.24
2102 6629 6.099269 TGGTCATAGTGGGGAATAACTTAGAC 59.901 42.308 0.00 0.00 32.58 2.59
2103 6630 6.206787 TGGTCATAGTGGGGAATAACTTAGA 58.793 40.000 0.00 0.00 0.00 2.10
2104 6631 6.494666 TGGTCATAGTGGGGAATAACTTAG 57.505 41.667 0.00 0.00 0.00 2.18
2105 6632 5.163237 GCTGGTCATAGTGGGGAATAACTTA 60.163 44.000 0.00 0.00 0.00 2.24
2106 6633 4.385310 GCTGGTCATAGTGGGGAATAACTT 60.385 45.833 0.00 0.00 0.00 2.66
2107 6634 3.136626 GCTGGTCATAGTGGGGAATAACT 59.863 47.826 0.00 0.00 0.00 2.24
2108 6635 3.118038 TGCTGGTCATAGTGGGGAATAAC 60.118 47.826 0.00 0.00 0.00 1.89
2109 6636 3.119319 TGCTGGTCATAGTGGGGAATAA 58.881 45.455 0.00 0.00 0.00 1.40
2110 6637 2.770447 TGCTGGTCATAGTGGGGAATA 58.230 47.619 0.00 0.00 0.00 1.75
2111 6638 1.595311 TGCTGGTCATAGTGGGGAAT 58.405 50.000 0.00 0.00 0.00 3.01
2112 6639 1.595311 ATGCTGGTCATAGTGGGGAA 58.405 50.000 0.00 0.00 32.59 3.97
2113 6640 2.487746 TATGCTGGTCATAGTGGGGA 57.512 50.000 0.00 0.00 36.63 4.81
2114 6641 2.439507 ACTTATGCTGGTCATAGTGGGG 59.560 50.000 0.00 0.00 38.75 4.96
2115 6642 3.845781 ACTTATGCTGGTCATAGTGGG 57.154 47.619 0.00 0.00 38.75 4.61
2116 6643 6.258727 CACTTAACTTATGCTGGTCATAGTGG 59.741 42.308 0.00 0.00 38.75 4.00
2117 6644 6.238211 GCACTTAACTTATGCTGGTCATAGTG 60.238 42.308 0.00 0.00 38.75 2.74
2118 6645 5.817816 GCACTTAACTTATGCTGGTCATAGT 59.182 40.000 0.00 0.00 38.75 2.12
2119 6646 6.292389 GCACTTAACTTATGCTGGTCATAG 57.708 41.667 0.00 0.00 38.75 2.23
2128 6655 7.581476 TGTGAAAAGTAGCACTTAACTTATGC 58.419 34.615 0.00 0.00 37.47 3.14
2129 6656 9.944663 TTTGTGAAAAGTAGCACTTAACTTATG 57.055 29.630 0.00 0.00 37.47 1.90
2194 6721 9.877178 TTGGTGTGTTTGTTTACTCATTTATTT 57.123 25.926 0.00 0.00 0.00 1.40
2195 6722 9.877178 TTTGGTGTGTTTGTTTACTCATTTATT 57.123 25.926 0.00 0.00 0.00 1.40
2225 6752 9.877178 TTGGTGTGTTTGTTTACTCATTTATTT 57.123 25.926 0.00 0.00 0.00 1.40
2226 6753 9.877178 TTTGGTGTGTTTGTTTACTCATTTATT 57.123 25.926 0.00 0.00 0.00 1.40
2227 6754 9.877178 TTTTGGTGTGTTTGTTTACTCATTTAT 57.123 25.926 0.00 0.00 0.00 1.40
2228 6755 9.877178 ATTTTGGTGTGTTTGTTTACTCATTTA 57.123 25.926 0.00 0.00 0.00 1.40
2229 6756 8.663911 CATTTTGGTGTGTTTGTTTACTCATTT 58.336 29.630 0.00 0.00 0.00 2.32
2230 6757 7.201600 GCATTTTGGTGTGTTTGTTTACTCATT 60.202 33.333 0.00 0.00 0.00 2.57
2231 6758 6.257630 GCATTTTGGTGTGTTTGTTTACTCAT 59.742 34.615 0.00 0.00 0.00 2.90
2232 6759 5.578727 GCATTTTGGTGTGTTTGTTTACTCA 59.421 36.000 0.00 0.00 0.00 3.41
2233 6760 5.276161 CGCATTTTGGTGTGTTTGTTTACTC 60.276 40.000 0.00 0.00 0.00 2.59
2234 6761 4.564769 CGCATTTTGGTGTGTTTGTTTACT 59.435 37.500 0.00 0.00 0.00 2.24
2235 6762 4.327627 ACGCATTTTGGTGTGTTTGTTTAC 59.672 37.500 0.00 0.00 39.65 2.01
2236 6763 4.495422 ACGCATTTTGGTGTGTTTGTTTA 58.505 34.783 0.00 0.00 39.65 2.01
2237 6764 3.330267 ACGCATTTTGGTGTGTTTGTTT 58.670 36.364 0.00 0.00 39.65 2.83
2238 6765 2.926838 GACGCATTTTGGTGTGTTTGTT 59.073 40.909 0.00 0.00 42.45 2.83
2239 6766 2.165437 AGACGCATTTTGGTGTGTTTGT 59.835 40.909 0.00 0.00 42.45 2.83
2240 6767 2.808244 AGACGCATTTTGGTGTGTTTG 58.192 42.857 0.00 0.00 42.45 2.93
2241 6768 4.846779 ATAGACGCATTTTGGTGTGTTT 57.153 36.364 0.00 0.00 42.45 2.83
2242 6769 5.121768 GTCTATAGACGCATTTTGGTGTGTT 59.878 40.000 16.87 0.00 42.45 3.32
2243 6770 4.630069 GTCTATAGACGCATTTTGGTGTGT 59.370 41.667 16.87 0.00 44.85 3.72
2244 6771 5.143916 GTCTATAGACGCATTTTGGTGTG 57.856 43.478 16.87 0.00 35.12 3.82
2251 6778 7.790415 CTGATCCAGATGTCTATAGACGCATTT 60.790 40.741 24.32 8.95 39.72 2.32
2252 6779 6.350027 CTGATCCAGATGTCTATAGACGCATT 60.350 42.308 24.32 11.58 39.72 3.56
2253 6780 5.125257 CTGATCCAGATGTCTATAGACGCAT 59.875 44.000 24.32 15.18 39.72 4.73
2254 6781 4.457257 CTGATCCAGATGTCTATAGACGCA 59.543 45.833 24.32 11.28 39.72 5.24
2255 6782 4.697828 TCTGATCCAGATGTCTATAGACGC 59.302 45.833 24.32 19.10 40.53 5.19
2256 6783 6.809630 TTCTGATCCAGATGTCTATAGACG 57.190 41.667 24.32 12.16 40.81 4.18
2257 6784 8.855110 TCTTTTCTGATCCAGATGTCTATAGAC 58.145 37.037 23.53 23.53 40.39 2.59
2258 6785 9.076781 CTCTTTTCTGATCCAGATGTCTATAGA 57.923 37.037 0.00 0.00 40.39 1.98
2259 6786 8.859090 ACTCTTTTCTGATCCAGATGTCTATAG 58.141 37.037 0.00 0.00 40.39 1.31
2260 6787 8.774546 ACTCTTTTCTGATCCAGATGTCTATA 57.225 34.615 0.00 0.00 40.39 1.31
2261 6788 7.673641 ACTCTTTTCTGATCCAGATGTCTAT 57.326 36.000 0.00 0.00 40.39 1.98
2262 6789 7.487822 AACTCTTTTCTGATCCAGATGTCTA 57.512 36.000 0.00 0.00 40.39 2.59
2263 6790 6.371595 AACTCTTTTCTGATCCAGATGTCT 57.628 37.500 0.00 0.00 40.39 3.41
2264 6791 7.551585 TCTAACTCTTTTCTGATCCAGATGTC 58.448 38.462 0.00 0.00 40.39 3.06
2265 6792 7.487822 TCTAACTCTTTTCTGATCCAGATGT 57.512 36.000 0.00 0.00 40.39 3.06
2266 6793 7.821359 TGTTCTAACTCTTTTCTGATCCAGATG 59.179 37.037 0.00 0.00 40.39 2.90
2267 6794 7.911651 TGTTCTAACTCTTTTCTGATCCAGAT 58.088 34.615 0.00 0.00 40.39 2.90
2268 6795 7.303182 TGTTCTAACTCTTTTCTGATCCAGA 57.697 36.000 0.00 0.00 38.87 3.86
2269 6796 7.279758 GGATGTTCTAACTCTTTTCTGATCCAG 59.720 40.741 0.00 0.00 0.00 3.86
2270 6797 7.038017 AGGATGTTCTAACTCTTTTCTGATCCA 60.038 37.037 0.00 0.00 0.00 3.41
2271 6798 7.334858 AGGATGTTCTAACTCTTTTCTGATCC 58.665 38.462 0.00 0.00 0.00 3.36
2279 6806 9.877178 CACAAGTATAGGATGTTCTAACTCTTT 57.123 33.333 0.00 0.00 0.00 2.52
2280 6807 9.256228 TCACAAGTATAGGATGTTCTAACTCTT 57.744 33.333 0.00 0.00 0.00 2.85
2281 6808 8.824756 TCACAAGTATAGGATGTTCTAACTCT 57.175 34.615 0.00 0.00 0.00 3.24
2282 6809 9.303537 GTTCACAAGTATAGGATGTTCTAACTC 57.696 37.037 0.00 0.00 0.00 3.01
2283 6810 7.974501 CGTTCACAAGTATAGGATGTTCTAACT 59.025 37.037 0.00 0.00 0.00 2.24
2284 6811 7.222224 CCGTTCACAAGTATAGGATGTTCTAAC 59.778 40.741 0.00 0.00 0.00 2.34
2285 6812 7.093640 ACCGTTCACAAGTATAGGATGTTCTAA 60.094 37.037 0.00 0.00 0.00 2.10
2286 6813 6.379133 ACCGTTCACAAGTATAGGATGTTCTA 59.621 38.462 0.00 0.00 0.00 2.10
2287 6814 5.187186 ACCGTTCACAAGTATAGGATGTTCT 59.813 40.000 0.00 0.00 0.00 3.01
2288 6815 5.291128 CACCGTTCACAAGTATAGGATGTTC 59.709 44.000 0.00 0.00 0.00 3.18
2289 6816 5.175859 CACCGTTCACAAGTATAGGATGTT 58.824 41.667 0.00 0.00 0.00 2.71
2290 6817 4.755411 CACCGTTCACAAGTATAGGATGT 58.245 43.478 0.00 0.00 0.00 3.06
2291 6818 3.555956 GCACCGTTCACAAGTATAGGATG 59.444 47.826 0.00 0.00 0.00 3.51
2292 6819 3.737047 CGCACCGTTCACAAGTATAGGAT 60.737 47.826 0.00 0.00 0.00 3.24
2293 6820 2.416296 CGCACCGTTCACAAGTATAGGA 60.416 50.000 0.00 0.00 0.00 2.94
2294 6821 1.924524 CGCACCGTTCACAAGTATAGG 59.075 52.381 0.00 0.00 0.00 2.57
2295 6822 2.852413 CTCGCACCGTTCACAAGTATAG 59.148 50.000 0.00 0.00 0.00 1.31
2296 6823 2.229543 ACTCGCACCGTTCACAAGTATA 59.770 45.455 0.00 0.00 0.00 1.47
2297 6824 1.000506 ACTCGCACCGTTCACAAGTAT 59.999 47.619 0.00 0.00 0.00 2.12
2298 6825 0.386476 ACTCGCACCGTTCACAAGTA 59.614 50.000 0.00 0.00 0.00 2.24
2299 6826 0.386476 TACTCGCACCGTTCACAAGT 59.614 50.000 0.00 0.00 0.00 3.16
2300 6827 0.782384 GTACTCGCACCGTTCACAAG 59.218 55.000 0.00 0.00 0.00 3.16
2301 6828 0.386476 AGTACTCGCACCGTTCACAA 59.614 50.000 0.00 0.00 0.00 3.33
2302 6829 1.069022 GTAGTACTCGCACCGTTCACA 60.069 52.381 0.00 0.00 0.00 3.58
2303 6830 1.611043 GTAGTACTCGCACCGTTCAC 58.389 55.000 0.00 0.00 0.00 3.18
2304 6831 0.166597 CGTAGTACTCGCACCGTTCA 59.833 55.000 0.00 0.00 0.00 3.18
2305 6832 0.166814 ACGTAGTACTCGCACCGTTC 59.833 55.000 0.00 0.00 41.94 3.95
2306 6833 0.593128 AACGTAGTACTCGCACCGTT 59.407 50.000 0.00 5.11 45.00 4.44
2307 6834 1.438651 TAACGTAGTACTCGCACCGT 58.561 50.000 0.00 0.00 45.00 4.83
2308 6835 2.030823 TGATAACGTAGTACTCGCACCG 59.969 50.000 0.00 0.00 45.00 4.94
2309 6836 3.680642 TGATAACGTAGTACTCGCACC 57.319 47.619 0.00 0.00 45.00 5.01
2310 6837 6.564854 AAATTGATAACGTAGTACTCGCAC 57.435 37.500 0.00 0.00 45.00 5.34
2311 6838 8.861033 ATTAAATTGATAACGTAGTACTCGCA 57.139 30.769 0.00 0.00 45.00 5.10
2335 6862 8.285394 GCACATACAGACGATGAAATGATTAAT 58.715 33.333 14.03 0.00 33.12 1.40
2336 6863 7.495606 AGCACATACAGACGATGAAATGATTAA 59.504 33.333 14.03 0.00 33.12 1.40
2337 6864 6.986231 AGCACATACAGACGATGAAATGATTA 59.014 34.615 14.03 0.00 33.12 1.75
2338 6865 5.819379 AGCACATACAGACGATGAAATGATT 59.181 36.000 14.03 0.00 33.12 2.57
2339 6866 5.235831 CAGCACATACAGACGATGAAATGAT 59.764 40.000 14.03 0.00 33.12 2.45
2340 6867 4.567959 CAGCACATACAGACGATGAAATGA 59.432 41.667 14.03 0.00 33.12 2.57
2341 6868 4.784394 GCAGCACATACAGACGATGAAATG 60.784 45.833 0.00 0.70 34.24 2.32
2342 6869 3.310774 GCAGCACATACAGACGATGAAAT 59.689 43.478 0.00 0.00 0.00 2.17
2343 6870 2.672874 GCAGCACATACAGACGATGAAA 59.327 45.455 0.00 0.00 0.00 2.69
2344 6871 2.270923 GCAGCACATACAGACGATGAA 58.729 47.619 0.00 0.00 0.00 2.57
2345 6872 1.471501 GGCAGCACATACAGACGATGA 60.472 52.381 0.00 0.00 0.00 2.92
2346 6873 0.933097 GGCAGCACATACAGACGATG 59.067 55.000 0.00 0.00 0.00 3.84
2347 6874 0.528466 CGGCAGCACATACAGACGAT 60.528 55.000 0.00 0.00 0.00 3.73
2348 6875 1.153842 CGGCAGCACATACAGACGA 60.154 57.895 0.00 0.00 0.00 4.20
2349 6876 1.446099 ACGGCAGCACATACAGACG 60.446 57.895 0.00 0.00 0.00 4.18
2350 6877 1.361668 CCACGGCAGCACATACAGAC 61.362 60.000 0.00 0.00 0.00 3.51
2351 6878 1.079197 CCACGGCAGCACATACAGA 60.079 57.895 0.00 0.00 0.00 3.41
2352 6879 1.361668 GACCACGGCAGCACATACAG 61.362 60.000 0.00 0.00 0.00 2.74
2353 6880 1.375396 GACCACGGCAGCACATACA 60.375 57.895 0.00 0.00 0.00 2.29
2354 6881 1.079127 AGACCACGGCAGCACATAC 60.079 57.895 0.00 0.00 0.00 2.39
2355 6882 1.218047 GAGACCACGGCAGCACATA 59.782 57.895 0.00 0.00 0.00 2.29
2356 6883 2.046892 GAGACCACGGCAGCACAT 60.047 61.111 0.00 0.00 0.00 3.21
2357 6884 2.324014 AAAGAGACCACGGCAGCACA 62.324 55.000 0.00 0.00 0.00 4.57
2358 6885 0.320421 TAAAGAGACCACGGCAGCAC 60.320 55.000 0.00 0.00 0.00 4.40
2359 6886 0.613260 ATAAAGAGACCACGGCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
2360 6887 1.666189 GAATAAAGAGACCACGGCAGC 59.334 52.381 0.00 0.00 0.00 5.25
2361 6888 1.927174 CGAATAAAGAGACCACGGCAG 59.073 52.381 0.00 0.00 0.00 4.85
2362 6889 2.004583 CGAATAAAGAGACCACGGCA 57.995 50.000 0.00 0.00 0.00 5.69
2363 6890 0.651031 GCGAATAAAGAGACCACGGC 59.349 55.000 0.00 0.00 0.00 5.68
2364 6891 1.927174 CTGCGAATAAAGAGACCACGG 59.073 52.381 0.00 0.00 0.00 4.94
2365 6892 1.927174 CCTGCGAATAAAGAGACCACG 59.073 52.381 0.00 0.00 0.00 4.94
2366 6893 2.673368 CACCTGCGAATAAAGAGACCAC 59.327 50.000 0.00 0.00 0.00 4.16
2367 6894 2.565391 TCACCTGCGAATAAAGAGACCA 59.435 45.455 0.00 0.00 0.00 4.02
2368 6895 3.190874 CTCACCTGCGAATAAAGAGACC 58.809 50.000 0.00 0.00 0.00 3.85
2369 6896 3.190874 CCTCACCTGCGAATAAAGAGAC 58.809 50.000 0.00 0.00 0.00 3.36
2370 6897 2.168521 CCCTCACCTGCGAATAAAGAGA 59.831 50.000 0.00 0.00 0.00 3.10
2371 6898 2.168521 TCCCTCACCTGCGAATAAAGAG 59.831 50.000 0.00 0.00 0.00 2.85
2372 6899 2.184533 TCCCTCACCTGCGAATAAAGA 58.815 47.619 0.00 0.00 0.00 2.52
2373 6900 2.691409 TCCCTCACCTGCGAATAAAG 57.309 50.000 0.00 0.00 0.00 1.85
2374 6901 2.503765 TCATCCCTCACCTGCGAATAAA 59.496 45.455 0.00 0.00 0.00 1.40
2375 6902 2.115427 TCATCCCTCACCTGCGAATAA 58.885 47.619 0.00 0.00 0.00 1.40
2376 6903 1.788229 TCATCCCTCACCTGCGAATA 58.212 50.000 0.00 0.00 0.00 1.75
2377 6904 1.135094 ATCATCCCTCACCTGCGAAT 58.865 50.000 0.00 0.00 0.00 3.34
2378 6905 1.788229 TATCATCCCTCACCTGCGAA 58.212 50.000 0.00 0.00 0.00 4.70
2379 6906 1.895798 GATATCATCCCTCACCTGCGA 59.104 52.381 0.00 0.00 0.00 5.10
2380 6907 1.403382 CGATATCATCCCTCACCTGCG 60.403 57.143 3.12 0.00 0.00 5.18
2381 6908 1.895798 TCGATATCATCCCTCACCTGC 59.104 52.381 3.12 0.00 0.00 4.85
2382 6909 2.094286 GCTCGATATCATCCCTCACCTG 60.094 54.545 3.12 0.00 0.00 4.00
2383 6910 2.175202 GCTCGATATCATCCCTCACCT 58.825 52.381 3.12 0.00 0.00 4.00
2384 6911 1.895798 TGCTCGATATCATCCCTCACC 59.104 52.381 3.12 0.00 0.00 4.02
2385 6912 2.560542 ACTGCTCGATATCATCCCTCAC 59.439 50.000 3.12 0.00 0.00 3.51
2386 6913 2.881734 ACTGCTCGATATCATCCCTCA 58.118 47.619 3.12 0.00 0.00 3.86
2387 6914 3.583806 CAACTGCTCGATATCATCCCTC 58.416 50.000 3.12 0.00 0.00 4.30
2388 6915 2.301296 CCAACTGCTCGATATCATCCCT 59.699 50.000 3.12 0.00 0.00 4.20
2389 6916 2.037772 ACCAACTGCTCGATATCATCCC 59.962 50.000 3.12 0.00 0.00 3.85
2390 6917 3.393089 ACCAACTGCTCGATATCATCC 57.607 47.619 3.12 0.00 0.00 3.51
2391 6918 4.210120 GTCAACCAACTGCTCGATATCATC 59.790 45.833 3.12 0.00 0.00 2.92
2392 6919 4.122776 GTCAACCAACTGCTCGATATCAT 58.877 43.478 3.12 0.00 0.00 2.45
2393 6920 3.521560 GTCAACCAACTGCTCGATATCA 58.478 45.455 3.12 0.00 0.00 2.15
2394 6921 2.535984 CGTCAACCAACTGCTCGATATC 59.464 50.000 0.00 0.00 0.00 1.63
2395 6922 2.165641 TCGTCAACCAACTGCTCGATAT 59.834 45.455 0.00 0.00 0.00 1.63
2396 6923 1.542472 TCGTCAACCAACTGCTCGATA 59.458 47.619 0.00 0.00 0.00 2.92
2397 6924 0.317160 TCGTCAACCAACTGCTCGAT 59.683 50.000 0.00 0.00 0.00 3.59
2398 6925 0.317160 ATCGTCAACCAACTGCTCGA 59.683 50.000 0.00 0.00 0.00 4.04
2399 6926 0.439985 CATCGTCAACCAACTGCTCG 59.560 55.000 0.00 0.00 0.00 5.03
2400 6927 1.461127 GTCATCGTCAACCAACTGCTC 59.539 52.381 0.00 0.00 0.00 4.26
2401 6928 1.202639 TGTCATCGTCAACCAACTGCT 60.203 47.619 0.00 0.00 0.00 4.24
2402 6929 1.069906 GTGTCATCGTCAACCAACTGC 60.070 52.381 0.00 0.00 0.00 4.40
2403 6930 1.192312 CGTGTCATCGTCAACCAACTG 59.808 52.381 0.00 0.00 0.00 3.16
2404 6931 1.497991 CGTGTCATCGTCAACCAACT 58.502 50.000 0.00 0.00 0.00 3.16
2405 6932 0.511221 CCGTGTCATCGTCAACCAAC 59.489 55.000 0.00 0.00 0.00 3.77
2406 6933 0.389757 TCCGTGTCATCGTCAACCAA 59.610 50.000 0.00 0.00 0.00 3.67
2407 6934 0.606096 ATCCGTGTCATCGTCAACCA 59.394 50.000 0.00 0.00 0.00 3.67
2408 6935 2.572191 TATCCGTGTCATCGTCAACC 57.428 50.000 0.00 0.00 0.00 3.77
2409 6936 3.444916 ACATATCCGTGTCATCGTCAAC 58.555 45.455 0.00 0.00 0.00 3.18
2410 6937 3.702330 GACATATCCGTGTCATCGTCAA 58.298 45.455 2.40 0.00 46.04 3.18
2411 6938 3.349488 GACATATCCGTGTCATCGTCA 57.651 47.619 2.40 0.00 46.04 4.35
2423 6950 4.079970 TCAGGTACATCTCGGACATATCC 58.920 47.826 0.00 0.00 42.28 2.59
2424 6951 4.378563 CGTCAGGTACATCTCGGACATATC 60.379 50.000 0.00 0.00 0.00 1.63
2425 6952 3.502595 CGTCAGGTACATCTCGGACATAT 59.497 47.826 0.00 0.00 0.00 1.78
2426 6953 2.876550 CGTCAGGTACATCTCGGACATA 59.123 50.000 0.00 0.00 0.00 2.29
2427 6954 1.676529 CGTCAGGTACATCTCGGACAT 59.323 52.381 0.00 0.00 0.00 3.06
2428 6955 1.092348 CGTCAGGTACATCTCGGACA 58.908 55.000 0.00 0.00 0.00 4.02
2429 6956 1.331138 CTCGTCAGGTACATCTCGGAC 59.669 57.143 0.00 0.00 0.00 4.79
2430 6957 1.664873 CTCGTCAGGTACATCTCGGA 58.335 55.000 0.00 0.00 0.00 4.55
2431 6958 0.663688 CCTCGTCAGGTACATCTCGG 59.336 60.000 0.00 0.00 34.60 4.63
2432 6959 1.664873 TCCTCGTCAGGTACATCTCG 58.335 55.000 0.00 0.00 41.28 4.04
2433 6960 2.223618 GCTTCCTCGTCAGGTACATCTC 60.224 54.545 0.00 0.00 41.28 2.75
2434 6961 1.751924 GCTTCCTCGTCAGGTACATCT 59.248 52.381 0.00 0.00 41.28 2.90
2435 6962 1.751924 AGCTTCCTCGTCAGGTACATC 59.248 52.381 0.00 0.00 41.28 3.06
2436 6963 1.853963 AGCTTCCTCGTCAGGTACAT 58.146 50.000 0.00 0.00 41.28 2.29
2437 6964 1.272490 CAAGCTTCCTCGTCAGGTACA 59.728 52.381 0.00 0.00 41.28 2.90
2438 6965 1.997669 CAAGCTTCCTCGTCAGGTAC 58.002 55.000 0.00 0.00 41.28 3.34
2466 6993 2.969628 ACCGATGACTCATTGACTCC 57.030 50.000 7.75 0.00 0.00 3.85
2471 6998 4.935205 TCCACTTTAACCGATGACTCATTG 59.065 41.667 0.00 0.00 0.00 2.82
2472 6999 4.935808 GTCCACTTTAACCGATGACTCATT 59.064 41.667 0.00 0.00 0.00 2.57
2474 7001 3.576982 AGTCCACTTTAACCGATGACTCA 59.423 43.478 0.00 0.00 0.00 3.41
2490 7017 1.680735 TGCATGTTTGTTGGAGTCCAC 59.319 47.619 12.69 8.06 30.78 4.02
2495 7022 3.087031 AGGAGATGCATGTTTGTTGGAG 58.913 45.455 2.46 0.00 0.00 3.86
2504 7031 1.841919 TCATGGTCAGGAGATGCATGT 59.158 47.619 2.46 0.00 33.51 3.21
2549 7076 7.823745 AACCACAGAAAAGAAGACACATTAT 57.176 32.000 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.