Multiple sequence alignment - TraesCS3B01G411900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G411900 chr3B 100.000 4391 0 0 1 4391 648102056 648106446 0.000000e+00 8109.0
1 TraesCS3B01G411900 chr3D 92.717 3323 159 50 455 3736 485357327 485360607 0.000000e+00 4719.0
2 TraesCS3B01G411900 chr3D 89.787 470 47 1 1 469 485356698 485357167 6.280000e-168 601.0
3 TraesCS3B01G411900 chr3D 96.154 52 2 0 3692 3743 485360607 485360658 7.820000e-13 86.1
4 TraesCS3B01G411900 chr3D 97.436 39 1 0 3758 3796 485189996 485190034 2.830000e-07 67.6
5 TraesCS3B01G411900 chr3A 92.365 1886 102 14 1887 3738 628303212 628305089 0.000000e+00 2647.0
6 TraesCS3B01G411900 chr3A 91.000 1900 134 15 1 1887 628301156 628303031 0.000000e+00 2527.0
7 TraesCS3B01G411900 chr3A 96.089 179 7 0 4075 4253 628305254 628305432 4.300000e-75 292.0
8 TraesCS3B01G411900 chr3A 92.617 149 9 1 4241 4389 628305451 628305597 3.440000e-51 213.0
9 TraesCS3B01G411900 chr3A 76.887 212 29 14 3865 4075 628305089 628305281 7.770000e-18 102.0
10 TraesCS3B01G411900 chr3A 86.567 67 4 4 3760 3825 628194203 628194265 7.880000e-08 69.4
11 TraesCS3B01G411900 chr1D 84.091 484 59 14 1016 1491 366223408 366223881 6.700000e-123 451.0
12 TraesCS3B01G411900 chr1D 76.180 445 90 14 2948 3385 366224969 366225404 2.060000e-53 220.0
13 TraesCS3B01G411900 chr1A 83.469 490 61 17 1016 1493 465524785 465524304 5.210000e-119 438.0
14 TraesCS3B01G411900 chr1A 86.667 90 12 0 2948 3037 465523235 465523146 2.790000e-17 100.0
15 TraesCS3B01G411900 chr1B 83.704 405 46 17 1095 1495 491266349 491265961 8.970000e-97 364.0
16 TraesCS3B01G411900 chr4B 100.000 39 0 0 3762 3800 144280551 144280513 6.090000e-09 73.1
17 TraesCS3B01G411900 chr7D 97.222 36 1 0 3762 3797 42500531 42500496 1.320000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G411900 chr3B 648102056 648106446 4390 False 8109.000000 8109 100.0000 1 4391 1 chr3B.!!$F1 4390
1 TraesCS3B01G411900 chr3D 485356698 485360658 3960 False 1802.033333 4719 92.8860 1 3743 3 chr3D.!!$F2 3742
2 TraesCS3B01G411900 chr3A 628301156 628305597 4441 False 1156.200000 2647 89.7916 1 4389 5 chr3A.!!$F2 4388
3 TraesCS3B01G411900 chr1D 366223408 366225404 1996 False 335.500000 451 80.1355 1016 3385 2 chr1D.!!$F1 2369
4 TraesCS3B01G411900 chr1A 465523146 465524785 1639 True 269.000000 438 85.0680 1016 3037 2 chr1A.!!$R1 2021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 354 0.101219 CTCCGTCATCATGCTCACGA 59.899 55.0 0.00 0.0 34.06 4.35 F
754 931 0.999712 AGACCGTCCATTTCCCCAAT 59.000 50.0 0.00 0.0 0.00 3.16 F
1675 2513 0.790814 GAGGCAAGCGTCACAGTTAC 59.209 55.0 9.63 0.0 0.00 2.50 F
2534 3601 0.755079 TCAGAAGAGTGCTGTGCTGT 59.245 50.0 4.52 0.0 34.98 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 2513 2.315925 TCGAGCTTGCAAGGGAATAG 57.684 50.0 27.1 1.36 0.00 1.73 R
2515 3582 0.755079 ACAGCACAGCACTCTTCTGA 59.245 50.0 0.0 0.00 35.61 3.27 R
3060 4181 0.865111 TGGATCAAGCAAACGACGTG 59.135 50.0 0.0 0.00 0.00 4.49 R
3757 4929 0.106167 TGGGACGGAGGGAGTAGATG 60.106 60.0 0.0 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.381327 GATCTCGGACCCCCACTGA 60.381 63.158 0.00 0.00 0.00 3.41
85 86 1.379044 CTGGCTCGCCCTCCAAAAT 60.379 57.895 5.33 0.00 34.56 1.82
123 124 0.527817 CGTCTTACTCGTCATGGGCC 60.528 60.000 0.00 0.00 0.00 5.80
166 167 2.378547 TCTTTGCAACCCAGTCCCTAAT 59.621 45.455 0.00 0.00 0.00 1.73
177 178 2.437281 CAGTCCCTAATGACATGGAGCT 59.563 50.000 0.00 0.00 37.73 4.09
196 197 1.880819 TACTCCTCGCGGGTTGTTCC 61.881 60.000 4.71 0.00 36.25 3.62
243 244 0.107017 CTTTCCTGGTGCCGATCCAT 60.107 55.000 0.00 0.00 34.26 3.41
245 246 1.271127 TTCCTGGTGCCGATCCATGA 61.271 55.000 0.00 0.00 34.26 3.07
246 247 1.227764 CCTGGTGCCGATCCATGAG 60.228 63.158 0.00 0.00 34.26 2.90
282 284 1.419874 GCGATGTGCTCTCTGAGTGC 61.420 60.000 21.36 21.36 41.73 4.40
352 354 0.101219 CTCCGTCATCATGCTCACGA 59.899 55.000 0.00 0.00 34.06 4.35
358 360 1.153289 ATCATGCTCACGACCTGGC 60.153 57.895 0.00 0.00 0.00 4.85
377 379 1.808945 GCCCATTTGGAGATATCGCAG 59.191 52.381 8.79 0.00 37.39 5.18
382 384 2.433318 GGAGATATCGCAGCGGGC 60.433 66.667 16.42 1.92 39.90 6.13
438 440 4.095632 CGTCTCGTGCATGATATCTAGGAT 59.904 45.833 9.53 0.00 0.00 3.24
495 672 3.370527 GGATGATCAACCTCCTTCCGAAA 60.371 47.826 14.49 0.00 31.89 3.46
500 677 1.263217 CAACCTCCTTCCGAAAACGTG 59.737 52.381 0.00 0.00 0.00 4.49
520 697 3.702548 GTGGTTTTCTTGTAAGTTGGGGT 59.297 43.478 0.00 0.00 0.00 4.95
552 729 2.027745 TGGTCTTCCTGCTCTGTTCATC 60.028 50.000 0.00 0.00 34.23 2.92
555 732 3.089284 TCTTCCTGCTCTGTTCATCGTA 58.911 45.455 0.00 0.00 0.00 3.43
559 736 3.951680 TCCTGCTCTGTTCATCGTATACA 59.048 43.478 3.32 0.00 0.00 2.29
575 752 5.856455 TCGTATACACATCATCAAGCGTATG 59.144 40.000 3.32 0.00 0.00 2.39
591 768 2.730928 CGTATGTGTCGCATGATGCATA 59.269 45.455 18.47 4.33 45.36 3.14
643 820 3.998099 AAGGAAAGACAAGCAAGCTTC 57.002 42.857 3.97 0.00 33.42 3.86
644 821 2.234143 AGGAAAGACAAGCAAGCTTCC 58.766 47.619 3.97 2.25 33.42 3.46
651 828 2.488153 GACAAGCAAGCTTCCCGTATTT 59.512 45.455 3.97 0.00 33.42 1.40
704 881 2.608752 GCCAAATGCAGTTCAACTCTGG 60.609 50.000 0.00 0.00 40.77 3.86
706 883 1.251251 AATGCAGTTCAACTCTGGCC 58.749 50.000 0.00 0.00 33.98 5.36
713 890 2.173569 AGTTCAACTCTGGCCTGTCTTT 59.826 45.455 3.32 0.00 0.00 2.52
754 931 0.999712 AGACCGTCCATTTCCCCAAT 59.000 50.000 0.00 0.00 0.00 3.16
756 933 0.999712 ACCGTCCATTTCCCCAATCT 59.000 50.000 0.00 0.00 0.00 2.40
757 934 2.171870 GACCGTCCATTTCCCCAATCTA 59.828 50.000 0.00 0.00 0.00 1.98
796 973 4.160635 GGTCGTCGCCGGCATTTG 62.161 66.667 28.98 13.05 41.51 2.32
797 974 4.811761 GTCGTCGCCGGCATTTGC 62.812 66.667 28.98 9.50 38.92 3.68
799 976 4.178214 CGTCGCCGGCATTTGCAT 62.178 61.111 28.98 0.00 44.36 3.96
801 978 2.438254 TCGCCGGCATTTGCATCT 60.438 55.556 28.98 0.00 44.36 2.90
847 1024 4.517934 CCGCGTCTCCCTCCCCTA 62.518 72.222 4.92 0.00 0.00 3.53
848 1025 2.907917 CGCGTCTCCCTCCCCTAG 60.908 72.222 0.00 0.00 0.00 3.02
849 1026 2.279408 GCGTCTCCCTCCCCTAGT 59.721 66.667 0.00 0.00 0.00 2.57
850 1027 1.829096 GCGTCTCCCTCCCCTAGTC 60.829 68.421 0.00 0.00 0.00 2.59
852 1029 1.934459 CGTCTCCCTCCCCTAGTCCA 61.934 65.000 0.00 0.00 0.00 4.02
1164 1354 2.835431 ATCTCCACCTCGCCTCCG 60.835 66.667 0.00 0.00 0.00 4.63
1530 2115 3.014304 ACCAGATCTCGTGGTAGCTTA 57.986 47.619 3.36 0.00 46.96 3.09
1534 2119 2.030717 AGATCTCGTGGTAGCTTATGCG 60.031 50.000 0.00 0.00 45.42 4.73
1675 2513 0.790814 GAGGCAAGCGTCACAGTTAC 59.209 55.000 9.63 0.00 0.00 2.50
1836 2690 7.818997 ATGACTAAATATAGACGAGGTGTGA 57.181 36.000 0.00 0.00 33.15 3.58
1873 2728 1.109323 GCTGTGGGTTTTCTGTGCCT 61.109 55.000 0.00 0.00 0.00 4.75
1890 2943 8.752005 TCTGTGCCTATTTTAGCTCATTATTT 57.248 30.769 0.00 0.00 32.61 1.40
1998 3051 3.509967 TGTCCATGTGTACTAGTGGTGAG 59.490 47.826 5.39 0.00 33.47 3.51
2007 3060 2.813907 ACTAGTGGTGAGTGATGAGCT 58.186 47.619 0.00 0.00 0.00 4.09
2008 3061 2.495270 ACTAGTGGTGAGTGATGAGCTG 59.505 50.000 0.00 0.00 0.00 4.24
2060 3113 7.037438 CCATTGGTCCATTTTTGATGTTCTAG 58.963 38.462 0.00 0.00 0.00 2.43
2134 3187 3.998341 GTGCCATTTCGACAAACTAGGTA 59.002 43.478 0.00 0.00 0.00 3.08
2294 3358 3.329520 TGTGGTGTAGCCTTACTGGATTT 59.670 43.478 0.00 0.00 38.35 2.17
2320 3384 1.001406 GGAACCTGGAGAGTGACTGTG 59.999 57.143 0.00 0.00 0.00 3.66
2431 3495 6.363626 CCGTGCTAATTCTGTATAGCTAAGTG 59.636 42.308 0.00 0.00 43.85 3.16
2441 3505 8.183104 TCTGTATAGCTAAGTGCATAATCTGT 57.817 34.615 0.00 0.00 45.94 3.41
2464 3528 9.640974 CTGTTCTTGAATTTGCAGTAAATTTTG 57.359 29.630 10.21 4.97 46.27 2.44
2534 3601 0.755079 TCAGAAGAGTGCTGTGCTGT 59.245 50.000 4.52 0.00 34.98 4.40
2586 3653 2.185387 GAGTAGCTGGGTTTAGGTGGA 58.815 52.381 0.00 0.00 0.00 4.02
2599 3666 5.105351 GGTTTAGGTGGATTTTCCTGAATGG 60.105 44.000 0.00 0.00 37.46 3.16
2639 3707 6.734104 ACACAATTATCTTTCTCTGCTGTC 57.266 37.500 0.00 0.00 0.00 3.51
2718 3786 9.793259 ATGGTGATTACATTATACGGAAGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
2945 4058 5.574055 CGTGCAAAATGCTGATTTCTATGTT 59.426 36.000 3.78 0.00 45.31 2.71
2976 4090 7.282224 TGTTTGTAGTCTGAAGTATTTGCTGTT 59.718 33.333 0.00 0.00 0.00 3.16
3060 4181 1.262683 GCTGTCTCTCACACACAAAGC 59.737 52.381 0.00 0.00 0.00 3.51
3063 4184 1.258982 GTCTCTCACACACAAAGCACG 59.741 52.381 0.00 0.00 0.00 5.34
3064 4185 1.134818 TCTCTCACACACAAAGCACGT 60.135 47.619 0.00 0.00 0.00 4.49
3066 4187 0.043053 CTCACACACAAAGCACGTCG 60.043 55.000 0.00 0.00 0.00 5.12
3067 4188 0.738063 TCACACACAAAGCACGTCGT 60.738 50.000 0.00 0.00 0.00 4.34
3090 4211 6.537301 CGTTTGCTTGATCCAAACTATACCTA 59.463 38.462 18.08 0.00 45.99 3.08
3103 4225 8.458843 CCAAACTATACCTACTGTGAATTTTGG 58.541 37.037 0.00 0.00 32.08 3.28
3398 4520 1.362224 GCCATAGATTAGCCCCTGGA 58.638 55.000 0.00 0.00 0.00 3.86
3743 4915 1.004745 CTGGTTGCCCTTGGATGTACT 59.995 52.381 0.00 0.00 0.00 2.73
3744 4916 2.238646 CTGGTTGCCCTTGGATGTACTA 59.761 50.000 0.00 0.00 0.00 1.82
3745 4917 2.026636 TGGTTGCCCTTGGATGTACTAC 60.027 50.000 0.00 0.00 0.00 2.73
3746 4918 2.026636 GGTTGCCCTTGGATGTACTACA 60.027 50.000 0.00 0.00 0.00 2.74
3747 4919 3.560453 GGTTGCCCTTGGATGTACTACAA 60.560 47.826 0.00 0.00 0.00 2.41
3748 4920 3.343941 TGCCCTTGGATGTACTACAAC 57.656 47.619 0.00 0.00 0.00 3.32
3749 4921 2.640332 TGCCCTTGGATGTACTACAACA 59.360 45.455 0.00 0.00 0.00 3.33
3750 4922 3.007635 GCCCTTGGATGTACTACAACAC 58.992 50.000 0.00 0.00 30.75 3.32
3751 4923 3.606687 CCCTTGGATGTACTACAACACC 58.393 50.000 0.00 0.00 30.75 4.16
3752 4924 3.263425 CCCTTGGATGTACTACAACACCT 59.737 47.826 0.00 0.00 30.75 4.00
3753 4925 4.263331 CCCTTGGATGTACTACAACACCTT 60.263 45.833 0.00 0.00 30.75 3.50
3754 4926 4.695455 CCTTGGATGTACTACAACACCTTG 59.305 45.833 0.00 0.00 30.75 3.61
3755 4927 4.967084 TGGATGTACTACAACACCTTGT 57.033 40.909 0.00 0.00 43.39 3.16
3756 4928 5.298989 TGGATGTACTACAACACCTTGTT 57.701 39.130 0.00 0.00 42.08 2.83
3757 4929 5.302360 TGGATGTACTACAACACCTTGTTC 58.698 41.667 0.00 0.00 38.77 3.18
3758 4930 5.163290 TGGATGTACTACAACACCTTGTTCA 60.163 40.000 0.00 0.00 38.77 3.18
3759 4931 5.938125 GGATGTACTACAACACCTTGTTCAT 59.062 40.000 0.00 0.00 38.77 2.57
3760 4932 6.092259 GGATGTACTACAACACCTTGTTCATC 59.908 42.308 0.00 0.00 38.77 2.92
3761 4933 6.169557 TGTACTACAACACCTTGTTCATCT 57.830 37.500 0.00 0.00 38.77 2.90
3762 4934 7.292713 TGTACTACAACACCTTGTTCATCTA 57.707 36.000 0.00 0.00 38.77 1.98
3763 4935 7.149973 TGTACTACAACACCTTGTTCATCTAC 58.850 38.462 0.00 0.00 38.77 2.59
3764 4936 6.420913 ACTACAACACCTTGTTCATCTACT 57.579 37.500 0.00 0.00 38.77 2.57
3765 4937 6.456501 ACTACAACACCTTGTTCATCTACTC 58.543 40.000 0.00 0.00 38.77 2.59
3766 4938 4.642429 ACAACACCTTGTTCATCTACTCC 58.358 43.478 0.00 0.00 38.77 3.85
3767 4939 3.983044 ACACCTTGTTCATCTACTCCC 57.017 47.619 0.00 0.00 0.00 4.30
3768 4940 3.521727 ACACCTTGTTCATCTACTCCCT 58.478 45.455 0.00 0.00 0.00 4.20
3769 4941 3.515901 ACACCTTGTTCATCTACTCCCTC 59.484 47.826 0.00 0.00 0.00 4.30
3770 4942 3.108376 ACCTTGTTCATCTACTCCCTCC 58.892 50.000 0.00 0.00 0.00 4.30
3771 4943 2.101582 CCTTGTTCATCTACTCCCTCCG 59.898 54.545 0.00 0.00 0.00 4.63
3772 4944 2.526888 TGTTCATCTACTCCCTCCGT 57.473 50.000 0.00 0.00 0.00 4.69
3773 4945 2.376109 TGTTCATCTACTCCCTCCGTC 58.624 52.381 0.00 0.00 0.00 4.79
3774 4946 1.682323 GTTCATCTACTCCCTCCGTCC 59.318 57.143 0.00 0.00 0.00 4.79
3775 4947 0.185416 TCATCTACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
3776 4948 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
3777 4949 0.186386 ATCTACTCCCTCCGTCCCAG 59.814 60.000 0.00 0.00 0.00 4.45
3778 4950 0.917821 TCTACTCCCTCCGTCCCAGA 60.918 60.000 0.00 0.00 0.00 3.86
3779 4951 0.033405 CTACTCCCTCCGTCCCAGAA 60.033 60.000 0.00 0.00 0.00 3.02
3780 4952 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
3781 4953 0.978146 ACTCCCTCCGTCCCAGAATG 60.978 60.000 0.00 0.00 0.00 2.67
3782 4954 0.978146 CTCCCTCCGTCCCAGAATGT 60.978 60.000 0.00 0.00 0.00 2.71
3783 4955 0.337082 TCCCTCCGTCCCAGAATGTA 59.663 55.000 0.00 0.00 0.00 2.29
3784 4956 1.200519 CCCTCCGTCCCAGAATGTAA 58.799 55.000 0.00 0.00 0.00 2.41
3785 4957 1.139058 CCCTCCGTCCCAGAATGTAAG 59.861 57.143 0.00 0.00 0.00 2.34
3786 4958 2.108168 CCTCCGTCCCAGAATGTAAGA 58.892 52.381 0.00 0.00 0.00 2.10
3787 4959 2.159085 CCTCCGTCCCAGAATGTAAGAC 60.159 54.545 0.00 0.00 0.00 3.01
3788 4960 1.475280 TCCGTCCCAGAATGTAAGACG 59.525 52.381 4.00 4.00 45.63 4.18
3789 4961 1.203994 CCGTCCCAGAATGTAAGACGT 59.796 52.381 9.63 0.00 45.03 4.34
3790 4962 2.353406 CCGTCCCAGAATGTAAGACGTT 60.353 50.000 9.63 0.00 45.03 3.99
3791 4963 3.323243 CGTCCCAGAATGTAAGACGTTT 58.677 45.455 2.88 0.00 43.02 3.60
3792 4964 3.744426 CGTCCCAGAATGTAAGACGTTTT 59.256 43.478 0.00 0.00 43.02 2.43
3793 4965 4.212636 CGTCCCAGAATGTAAGACGTTTTT 59.787 41.667 0.00 0.00 43.02 1.94
3815 4987 6.443934 TTTGATACCATTACATTTGGGACG 57.556 37.500 0.00 0.00 38.64 4.79
3816 4988 4.456535 TGATACCATTACATTTGGGACGG 58.543 43.478 0.00 0.00 38.64 4.79
3817 4989 4.164413 TGATACCATTACATTTGGGACGGA 59.836 41.667 0.00 0.00 38.64 4.69
3818 4990 2.999331 ACCATTACATTTGGGACGGAG 58.001 47.619 0.00 0.00 38.64 4.63
3819 4991 2.297701 CCATTACATTTGGGACGGAGG 58.702 52.381 0.00 0.00 0.00 4.30
3820 4992 2.297701 CATTACATTTGGGACGGAGGG 58.702 52.381 0.00 0.00 0.00 4.30
3821 4993 1.659022 TTACATTTGGGACGGAGGGA 58.341 50.000 0.00 0.00 0.00 4.20
3822 4994 1.200519 TACATTTGGGACGGAGGGAG 58.799 55.000 0.00 0.00 0.00 4.30
3823 4995 0.840722 ACATTTGGGACGGAGGGAGT 60.841 55.000 0.00 0.00 0.00 3.85
3824 4996 1.200519 CATTTGGGACGGAGGGAGTA 58.799 55.000 0.00 0.00 0.00 2.59
3825 4997 1.139058 CATTTGGGACGGAGGGAGTAG 59.861 57.143 0.00 0.00 0.00 2.57
3826 4998 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
3827 4999 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
3828 5000 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
3829 5001 0.257039 GGGACGGAGGGAGTAGTACA 59.743 60.000 2.52 0.00 0.00 2.90
3830 5002 1.133544 GGGACGGAGGGAGTAGTACAT 60.134 57.143 2.52 0.00 0.00 2.29
3831 5003 2.107204 GGGACGGAGGGAGTAGTACATA 59.893 54.545 2.52 0.00 0.00 2.29
3832 5004 3.435601 GGGACGGAGGGAGTAGTACATAA 60.436 52.174 2.52 0.00 0.00 1.90
3833 5005 4.405548 GGACGGAGGGAGTAGTACATAAT 58.594 47.826 2.52 0.00 0.00 1.28
3834 5006 4.458642 GGACGGAGGGAGTAGTACATAATC 59.541 50.000 2.52 0.00 0.00 1.75
3835 5007 5.315348 GACGGAGGGAGTAGTACATAATCT 58.685 45.833 2.52 0.00 0.00 2.40
3836 5008 5.071370 ACGGAGGGAGTAGTACATAATCTG 58.929 45.833 2.52 3.44 0.00 2.90
3837 5009 4.082679 CGGAGGGAGTAGTACATAATCTGC 60.083 50.000 2.52 0.00 0.00 4.26
3838 5010 5.081032 GGAGGGAGTAGTACATAATCTGCT 58.919 45.833 2.52 0.00 0.00 4.24
3839 5011 5.540719 GGAGGGAGTAGTACATAATCTGCTT 59.459 44.000 2.52 0.00 0.00 3.91
3840 5012 6.720288 GGAGGGAGTAGTACATAATCTGCTTA 59.280 42.308 2.52 0.00 0.00 3.09
3841 5013 7.397761 GGAGGGAGTAGTACATAATCTGCTTAT 59.602 40.741 2.52 0.00 0.00 1.73
3851 5023 6.187125 CATAATCTGCTTATGGTGGTATGC 57.813 41.667 3.84 0.00 42.00 3.14
3852 5024 2.238942 TCTGCTTATGGTGGTATGCG 57.761 50.000 0.00 0.00 0.00 4.73
3853 5025 1.202639 TCTGCTTATGGTGGTATGCGG 60.203 52.381 0.00 0.00 34.27 5.69
3854 5026 0.833949 TGCTTATGGTGGTATGCGGA 59.166 50.000 0.00 0.00 0.00 5.54
3855 5027 1.202639 TGCTTATGGTGGTATGCGGAG 60.203 52.381 0.00 0.00 0.00 4.63
3856 5028 1.202651 GCTTATGGTGGTATGCGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
3857 5029 2.036733 GCTTATGGTGGTATGCGGAGTA 59.963 50.000 0.00 0.00 0.00 2.59
3858 5030 3.861131 GCTTATGGTGGTATGCGGAGTAG 60.861 52.174 0.00 0.00 0.00 2.57
3859 5031 1.789523 ATGGTGGTATGCGGAGTAGT 58.210 50.000 0.00 0.00 0.00 2.73
3860 5032 2.440517 TGGTGGTATGCGGAGTAGTA 57.559 50.000 0.00 0.00 0.00 1.82
3861 5033 2.026641 TGGTGGTATGCGGAGTAGTAC 58.973 52.381 0.00 0.00 0.00 2.73
3862 5034 2.026641 GGTGGTATGCGGAGTAGTACA 58.973 52.381 2.52 0.00 0.00 2.90
3863 5035 2.626743 GGTGGTATGCGGAGTAGTACAT 59.373 50.000 2.52 0.00 0.00 2.29
3864 5036 3.822735 GGTGGTATGCGGAGTAGTACATA 59.177 47.826 2.52 0.00 0.00 2.29
3865 5037 4.279169 GGTGGTATGCGGAGTAGTACATAA 59.721 45.833 2.52 0.00 0.00 1.90
3866 5038 5.047519 GGTGGTATGCGGAGTAGTACATAAT 60.048 44.000 2.52 0.00 0.00 1.28
3867 5039 6.091437 GTGGTATGCGGAGTAGTACATAATC 58.909 44.000 2.52 0.00 0.00 1.75
3868 5040 6.008331 TGGTATGCGGAGTAGTACATAATCT 58.992 40.000 2.52 0.00 0.00 2.40
3869 5041 6.072119 TGGTATGCGGAGTAGTACATAATCTG 60.072 42.308 2.52 0.46 37.80 2.90
3870 5042 6.150641 GGTATGCGGAGTAGTACATAATCTGA 59.849 42.308 2.52 0.00 37.07 3.27
3871 5043 6.842437 ATGCGGAGTAGTACATAATCTGAT 57.158 37.500 2.52 0.00 37.07 2.90
3890 5062 2.335316 TTATGGTGGTATGCCCGTTC 57.665 50.000 0.00 0.00 35.15 3.95
3896 5068 2.876550 GGTGGTATGCCCGTTCTTATTC 59.123 50.000 0.00 0.00 35.15 1.75
3898 5070 3.560068 GTGGTATGCCCGTTCTTATTCTG 59.440 47.826 0.00 0.00 35.15 3.02
3909 5081 7.484959 GCCCGTTCTTATTCTGAAACTATTTTG 59.515 37.037 0.00 0.00 0.00 2.44
3910 5082 8.512138 CCCGTTCTTATTCTGAAACTATTTTGT 58.488 33.333 0.00 0.00 0.00 2.83
3931 5103 4.080243 TGTTCCTCAACTTGTTTGGGACTA 60.080 41.667 12.05 1.79 38.03 2.59
3932 5104 4.781775 TCCTCAACTTGTTTGGGACTAA 57.218 40.909 0.00 0.00 38.03 2.24
3937 5109 6.096282 CCTCAACTTGTTTGGGACTAAAAGAA 59.904 38.462 0.00 0.00 38.03 2.52
3944 5116 9.810545 CTTGTTTGGGACTAAAAGAATTTGTTA 57.189 29.630 0.00 0.00 39.02 2.41
3963 5144 6.412362 TGTTAATGTTATTGTTGGGCTGTT 57.588 33.333 0.00 0.00 0.00 3.16
3975 5156 2.023673 TGGGCTGTTTGTGACTGAAAG 58.976 47.619 0.00 0.00 42.29 2.62
3976 5157 2.297701 GGGCTGTTTGTGACTGAAAGA 58.702 47.619 0.00 0.00 37.43 2.52
3980 5161 4.741676 GGCTGTTTGTGACTGAAAGATTTG 59.258 41.667 0.00 0.00 37.43 2.32
3981 5162 5.343249 GCTGTTTGTGACTGAAAGATTTGT 58.657 37.500 0.00 0.00 37.43 2.83
3983 5164 6.237648 GCTGTTTGTGACTGAAAGATTTGTTG 60.238 38.462 0.00 0.00 37.43 3.33
3984 5165 5.576384 TGTTTGTGACTGAAAGATTTGTTGC 59.424 36.000 0.00 0.00 37.43 4.17
3985 5166 3.951306 TGTGACTGAAAGATTTGTTGCG 58.049 40.909 0.00 0.00 37.43 4.85
3987 5168 3.968724 GTGACTGAAAGATTTGTTGCGTC 59.031 43.478 0.00 0.00 37.43 5.19
3991 5172 5.650543 ACTGAAAGATTTGTTGCGTCTTTT 58.349 33.333 0.00 0.00 41.01 2.27
3992 5173 6.099341 ACTGAAAGATTTGTTGCGTCTTTTT 58.901 32.000 0.00 0.00 41.01 1.94
3993 5174 7.254852 ACTGAAAGATTTGTTGCGTCTTTTTA 58.745 30.769 0.00 0.00 41.01 1.52
3994 5175 7.757624 ACTGAAAGATTTGTTGCGTCTTTTTAA 59.242 29.630 0.00 0.00 41.01 1.52
3995 5176 8.467402 TGAAAGATTTGTTGCGTCTTTTTAAA 57.533 26.923 0.00 0.00 41.01 1.52
3997 5178 9.914923 GAAAGATTTGTTGCGTCTTTTTAAATT 57.085 25.926 0.00 0.00 41.01 1.82
3998 5179 9.914923 AAAGATTTGTTGCGTCTTTTTAAATTC 57.085 25.926 0.00 0.00 38.63 2.17
4001 5182 9.914923 GATTTGTTGCGTCTTTTTAAATTCTTT 57.085 25.926 0.00 0.00 0.00 2.52
4004 5185 9.535270 TTGTTGCGTCTTTTTAAATTCTTTTTG 57.465 25.926 0.00 0.00 0.00 2.44
4005 5186 8.713271 TGTTGCGTCTTTTTAAATTCTTTTTGT 58.287 25.926 0.00 0.00 0.00 2.83
4006 5187 8.984678 GTTGCGTCTTTTTAAATTCTTTTTGTG 58.015 29.630 0.00 0.00 0.00 3.33
4007 5188 8.245701 TGCGTCTTTTTAAATTCTTTTTGTGT 57.754 26.923 0.00 0.00 0.00 3.72
4008 5189 8.713271 TGCGTCTTTTTAAATTCTTTTTGTGTT 58.287 25.926 0.00 0.00 0.00 3.32
4009 5190 8.984678 GCGTCTTTTTAAATTCTTTTTGTGTTG 58.015 29.630 0.00 0.00 0.00 3.33
4016 5197 6.407475 AAATTCTTTTTGTGTTGTGTCTGC 57.593 33.333 0.00 0.00 0.00 4.26
4017 5198 4.782019 TTCTTTTTGTGTTGTGTCTGCT 57.218 36.364 0.00 0.00 0.00 4.24
4018 5199 4.782019 TCTTTTTGTGTTGTGTCTGCTT 57.218 36.364 0.00 0.00 0.00 3.91
4019 5200 5.132897 TCTTTTTGTGTTGTGTCTGCTTT 57.867 34.783 0.00 0.00 0.00 3.51
4020 5201 5.537188 TCTTTTTGTGTTGTGTCTGCTTTT 58.463 33.333 0.00 0.00 0.00 2.27
4021 5202 6.682746 TCTTTTTGTGTTGTGTCTGCTTTTA 58.317 32.000 0.00 0.00 0.00 1.52
4022 5203 7.319646 TCTTTTTGTGTTGTGTCTGCTTTTAT 58.680 30.769 0.00 0.00 0.00 1.40
4023 5204 7.487829 TCTTTTTGTGTTGTGTCTGCTTTTATC 59.512 33.333 0.00 0.00 0.00 1.75
4024 5205 4.466567 TGTGTTGTGTCTGCTTTTATCG 57.533 40.909 0.00 0.00 0.00 2.92
4028 5209 2.949142 TGTGTCTGCTTTTATCGCGTA 58.051 42.857 5.77 0.00 0.00 4.42
4032 5213 3.176708 GTCTGCTTTTATCGCGTACTGA 58.823 45.455 5.77 0.00 0.00 3.41
4065 5246 4.692625 ACTTCTGTCATATCTGTGTTGTGC 59.307 41.667 0.00 0.00 0.00 4.57
4066 5247 4.541973 TCTGTCATATCTGTGTTGTGCT 57.458 40.909 0.00 0.00 0.00 4.40
4067 5248 4.498241 TCTGTCATATCTGTGTTGTGCTC 58.502 43.478 0.00 0.00 0.00 4.26
4068 5249 4.221482 TCTGTCATATCTGTGTTGTGCTCT 59.779 41.667 0.00 0.00 0.00 4.09
4069 5250 4.248058 TGTCATATCTGTGTTGTGCTCTG 58.752 43.478 0.00 0.00 0.00 3.35
4070 5251 3.620374 GTCATATCTGTGTTGTGCTCTGG 59.380 47.826 0.00 0.00 0.00 3.86
4071 5252 2.099141 TATCTGTGTTGTGCTCTGGC 57.901 50.000 0.00 0.00 39.26 4.85
4083 5264 3.851458 TGCTCTGGCATTGTCATATCT 57.149 42.857 0.00 0.00 44.28 1.98
4084 5265 3.473625 TGCTCTGGCATTGTCATATCTG 58.526 45.455 0.00 0.00 44.28 2.90
4085 5266 3.118149 TGCTCTGGCATTGTCATATCTGT 60.118 43.478 0.00 0.00 44.28 3.41
4086 5267 3.250280 GCTCTGGCATTGTCATATCTGTG 59.750 47.826 0.00 0.00 38.54 3.66
4087 5268 4.449131 CTCTGGCATTGTCATATCTGTGT 58.551 43.478 0.00 0.00 0.00 3.72
4088 5269 4.847198 TCTGGCATTGTCATATCTGTGTT 58.153 39.130 0.00 0.00 0.00 3.32
4089 5270 4.637091 TCTGGCATTGTCATATCTGTGTTG 59.363 41.667 0.00 0.00 0.00 3.33
4090 5271 4.334552 TGGCATTGTCATATCTGTGTTGT 58.665 39.130 0.00 0.00 0.00 3.32
4091 5272 4.156373 TGGCATTGTCATATCTGTGTTGTG 59.844 41.667 0.00 0.00 0.00 3.33
4092 5273 4.156556 GGCATTGTCATATCTGTGTTGTGT 59.843 41.667 0.00 0.00 0.00 3.72
4093 5274 5.335897 GGCATTGTCATATCTGTGTTGTGTT 60.336 40.000 0.00 0.00 0.00 3.32
4104 5285 3.779759 TGTGTTGTGTTCTGGCATTTTC 58.220 40.909 0.00 0.00 0.00 2.29
4115 5296 7.538678 GTGTTCTGGCATTTTCTATTGTAGTTG 59.461 37.037 0.00 0.00 0.00 3.16
4155 5336 2.034879 CCCTAGCGTTGCACACCAG 61.035 63.158 0.00 0.00 0.00 4.00
4253 5434 1.483415 GGCATTTGGATTGATGGTGCT 59.517 47.619 0.00 0.00 0.00 4.40
4270 5482 2.996621 GTGCTATCAGTGCGAACTTTCT 59.003 45.455 0.00 0.00 0.00 2.52
4271 5483 3.061429 GTGCTATCAGTGCGAACTTTCTC 59.939 47.826 0.00 0.00 0.00 2.87
4275 5487 0.946221 CAGTGCGAACTTTCTCGGCT 60.946 55.000 0.00 0.00 39.27 5.52
4309 5521 3.496131 CACCGCGGATTTGGGACG 61.496 66.667 35.90 0.02 0.00 4.79
4316 5528 1.103803 CGGATTTGGGACGAGAGAGA 58.896 55.000 0.00 0.00 0.00 3.10
4319 5531 1.743958 GATTTGGGACGAGAGAGACGA 59.256 52.381 0.00 0.00 34.70 4.20
4329 5541 0.250793 AGAGAGACGAGCGAGAAGGA 59.749 55.000 0.00 0.00 0.00 3.36
4335 5547 1.200484 GACGAGCGAGAAGGAAACTCT 59.800 52.381 0.00 0.00 42.68 3.24
4370 5582 0.884704 TTCTTCAGTTCAGCCCGTGC 60.885 55.000 0.00 0.00 37.95 5.34
4380 5592 2.594592 GCCCGTGCAAGTGGAAGT 60.595 61.111 10.46 0.00 37.47 3.01
4389 5601 1.600916 AAGTGGAAGTGGAAGCGGC 60.601 57.895 0.00 0.00 0.00 6.53
4390 5602 2.281484 GTGGAAGTGGAAGCGGCA 60.281 61.111 1.45 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.320683 CACTTCGATGTGGAGTGGCA 60.321 55.000 20.62 0.00 34.56 4.92
100 101 1.471287 CCATGACGAGTAAGACGGTCA 59.529 52.381 11.27 8.34 39.44 4.02
110 111 3.083997 GGGAGGCCCATGACGAGT 61.084 66.667 0.00 0.00 44.65 4.18
132 133 0.373716 GCAAAGAACATACCGCTCCG 59.626 55.000 0.00 0.00 0.00 4.63
141 142 1.963515 GGACTGGGTTGCAAAGAACAT 59.036 47.619 0.00 0.00 0.00 2.71
196 197 0.872021 GCCATACCTGACGCGAGAAG 60.872 60.000 15.93 6.81 0.00 2.85
243 244 3.650950 GGCAAGGCAGGGTCCTCA 61.651 66.667 0.00 0.00 34.82 3.86
264 265 0.173029 AGCACTCAGAGAGCACATCG 59.827 55.000 20.48 0.00 34.13 3.84
282 284 2.985456 GAGCAGGAGGACACCCAG 59.015 66.667 0.00 0.00 33.88 4.45
326 328 1.932604 GCATGATGACGGAGGATCGAC 60.933 57.143 0.00 0.00 34.37 4.20
352 354 1.607225 TATCTCCAAATGGGCCAGGT 58.393 50.000 13.78 0.00 36.21 4.00
358 360 1.808945 GCTGCGATATCTCCAAATGGG 59.191 52.381 0.34 0.00 35.41 4.00
382 384 3.257561 CTGCCCGTCGAAGATGCG 61.258 66.667 0.00 0.00 43.31 4.73
414 416 3.189495 CCTAGATATCATGCACGAGACGT 59.811 47.826 5.32 0.00 42.36 4.34
433 435 2.237143 CTCAAAGGTGTGCCTCATCCTA 59.763 50.000 0.00 0.00 46.33 2.94
438 440 4.481195 GCTCAAAGGTGTGCCTCA 57.519 55.556 0.00 0.00 46.33 3.86
450 452 2.970324 GTGTCGGCGTTGGCTCAA 60.970 61.111 6.85 0.00 39.81 3.02
459 461 2.046314 ATCCCTTTGGTGTCGGCG 60.046 61.111 0.00 0.00 0.00 6.46
495 672 4.142337 CCCAACTTACAAGAAAACCACGTT 60.142 41.667 0.00 0.00 0.00 3.99
500 677 4.403113 TCAACCCCAACTTACAAGAAAACC 59.597 41.667 0.00 0.00 0.00 3.27
520 697 0.110486 GGAAGACCAGGGTTGCTCAA 59.890 55.000 0.00 0.00 35.97 3.02
552 729 5.629435 ACATACGCTTGATGATGTGTATACG 59.371 40.000 4.40 0.00 37.66 3.06
555 732 5.912360 CACATACGCTTGATGATGTGTAT 57.088 39.130 5.83 0.00 42.66 2.29
559 736 2.860136 CGACACATACGCTTGATGATGT 59.140 45.455 0.00 0.00 32.78 3.06
591 768 5.897250 AGGAAAGTGAAAAATACAGTGGGTT 59.103 36.000 0.00 0.00 0.00 4.11
624 801 2.234143 GGAAGCTTGCTTGTCTTTCCT 58.766 47.619 12.92 0.00 0.00 3.36
634 811 0.811281 GCAAATACGGGAAGCTTGCT 59.189 50.000 18.04 1.16 39.39 3.91
635 812 0.523335 CGCAAATACGGGAAGCTTGC 60.523 55.000 9.87 9.87 39.16 4.01
666 843 1.271108 TGGCACAATCGAGCAACCTTA 60.271 47.619 0.00 0.00 31.92 2.69
698 875 0.475906 AGCAAAAGACAGGCCAGAGT 59.524 50.000 5.01 0.00 0.00 3.24
704 881 2.685388 GGAGGATAAGCAAAAGACAGGC 59.315 50.000 0.00 0.00 0.00 4.85
706 883 4.583871 AGTGGAGGATAAGCAAAAGACAG 58.416 43.478 0.00 0.00 0.00 3.51
713 890 3.300388 AGATCGAGTGGAGGATAAGCAA 58.700 45.455 0.00 0.00 0.00 3.91
792 969 1.203994 GTGCTGCCTTCAGATGCAAAT 59.796 47.619 0.00 0.00 42.95 2.32
795 972 2.036571 CGTGCTGCCTTCAGATGCA 61.037 57.895 0.00 0.00 42.95 3.96
796 973 1.094073 ATCGTGCTGCCTTCAGATGC 61.094 55.000 0.00 0.00 42.95 3.91
797 974 2.133553 CTATCGTGCTGCCTTCAGATG 58.866 52.381 0.00 0.00 42.95 2.90
798 975 1.759445 ACTATCGTGCTGCCTTCAGAT 59.241 47.619 0.00 0.00 42.95 2.90
799 976 1.135139 GACTATCGTGCTGCCTTCAGA 59.865 52.381 0.00 0.00 42.95 3.27
801 978 0.894835 TGACTATCGTGCTGCCTTCA 59.105 50.000 0.00 0.00 0.00 3.02
845 1022 1.156645 GCTTGCTGCGGATGGACTAG 61.157 60.000 0.00 0.00 0.00 2.57
846 1023 1.153369 GCTTGCTGCGGATGGACTA 60.153 57.895 0.00 0.00 0.00 2.59
847 1024 2.437359 GCTTGCTGCGGATGGACT 60.437 61.111 0.00 0.00 0.00 3.85
848 1025 1.865788 TTTGCTTGCTGCGGATGGAC 61.866 55.000 0.00 0.00 46.63 4.02
849 1026 1.588824 CTTTGCTTGCTGCGGATGGA 61.589 55.000 0.00 0.00 46.63 3.41
850 1027 1.153901 CTTTGCTTGCTGCGGATGG 60.154 57.895 0.00 0.00 46.63 3.51
852 1029 2.209064 CTGCTTTGCTTGCTGCGGAT 62.209 55.000 0.00 0.00 46.63 4.18
1534 2119 2.386249 AGCTAAATCTCGCGAATCGAC 58.614 47.619 11.33 0.00 43.16 4.20
1543 2128 5.643339 AAATACGCAAGAGCTAAATCTCG 57.357 39.130 0.00 0.00 43.62 4.04
1634 2409 3.245284 CCAAGTACTAACCATGAATCGCG 59.755 47.826 0.00 0.00 0.00 5.87
1675 2513 2.315925 TCGAGCTTGCAAGGGAATAG 57.684 50.000 27.10 1.36 0.00 1.73
1836 2690 3.057315 ACAGCAGAATAAGCGCATGTTTT 60.057 39.130 11.47 0.00 37.01 2.43
1890 2943 9.346005 TCTAATATCGAACACAAGACATACCTA 57.654 33.333 0.00 0.00 0.00 3.08
2060 3113 7.012421 GTCCACAACTGGTCCATTAGATAATTC 59.988 40.741 0.00 0.00 38.90 2.17
2172 3225 7.801716 TTTTTAGGCGCAGATATCAAGTATT 57.198 32.000 10.83 0.00 0.00 1.89
2294 3358 3.045634 TCACTCTCCAGGTTCCAAAAGA 58.954 45.455 0.00 0.00 0.00 2.52
2320 3384 8.997621 TTTGTCACTAATCAGTACTCCATAAC 57.002 34.615 0.00 0.00 32.21 1.89
2399 3463 4.273148 ACAGAATTAGCACGGTCTTTCT 57.727 40.909 0.00 0.00 0.00 2.52
2431 3495 6.810182 ACTGCAAATTCAAGAACAGATTATGC 59.190 34.615 0.00 0.00 0.00 3.14
2464 3528 2.435805 TCTCCTAGGTGTCAATGCCATC 59.564 50.000 9.08 0.00 0.00 3.51
2515 3582 0.755079 ACAGCACAGCACTCTTCTGA 59.245 50.000 0.00 0.00 35.61 3.27
2534 3601 8.671921 TGCAATTACATTTCTTTCAAGCAAAAA 58.328 25.926 0.00 0.00 0.00 1.94
2586 3653 4.980339 ACTTTTGCCCATTCAGGAAAAT 57.020 36.364 0.00 0.00 41.22 1.82
2639 3707 9.289303 GCATAGTTACATTTGAACATGGTAAAG 57.711 33.333 0.00 0.00 0.00 1.85
2718 3786 7.384439 TGAATAAATAACTGAAACGCCATGA 57.616 32.000 0.00 0.00 0.00 3.07
2902 4015 4.267690 GCACGGAAGGAAACAAAGAAAAAG 59.732 41.667 0.00 0.00 0.00 2.27
2945 4058 8.394877 CAAATACTTCAGACTACAAACACAACA 58.605 33.333 0.00 0.00 0.00 3.33
3060 4181 0.865111 TGGATCAAGCAAACGACGTG 59.135 50.000 0.00 0.00 0.00 4.49
3063 4184 3.626028 AGTTTGGATCAAGCAAACGAC 57.374 42.857 15.79 0.16 41.91 4.34
3064 4185 5.353123 GGTATAGTTTGGATCAAGCAAACGA 59.647 40.000 15.79 12.88 41.91 3.85
3066 4187 6.759497 AGGTATAGTTTGGATCAAGCAAAC 57.241 37.500 14.62 14.62 38.63 2.93
3067 4188 7.552687 CAGTAGGTATAGTTTGGATCAAGCAAA 59.447 37.037 0.00 0.00 0.00 3.68
3090 4211 7.254863 GCAACAAATCATTCCAAAATTCACAGT 60.255 33.333 0.00 0.00 0.00 3.55
3103 4225 3.760684 AGGGAGACAGCAACAAATCATTC 59.239 43.478 0.00 0.00 0.00 2.67
3339 4461 4.893524 ACCGAGATGTACATGAGGAATACA 59.106 41.667 14.43 0.00 33.54 2.29
3418 4540 5.675538 ACGGGGAAAATTTCAACATTTCAA 58.324 33.333 8.09 0.00 35.32 2.69
3463 4585 3.391296 GGGGGACAGAGTATATTCAAGCA 59.609 47.826 0.00 0.00 0.00 3.91
3702 4830 7.349598 ACCAGATGAATTATCTAGTTGCCTTT 58.650 34.615 0.00 0.00 44.34 3.11
3743 4915 5.279809 GGGAGTAGATGAACAAGGTGTTGTA 60.280 44.000 0.00 0.00 46.68 2.41
3745 4917 4.003648 GGGAGTAGATGAACAAGGTGTTG 58.996 47.826 0.00 0.00 41.28 3.33
3746 4918 3.910627 AGGGAGTAGATGAACAAGGTGTT 59.089 43.478 0.00 0.00 44.37 3.32
3747 4919 3.515901 GAGGGAGTAGATGAACAAGGTGT 59.484 47.826 0.00 0.00 0.00 4.16
3748 4920 3.118592 GGAGGGAGTAGATGAACAAGGTG 60.119 52.174 0.00 0.00 0.00 4.00
3749 4921 3.108376 GGAGGGAGTAGATGAACAAGGT 58.892 50.000 0.00 0.00 0.00 3.50
3750 4922 2.101582 CGGAGGGAGTAGATGAACAAGG 59.898 54.545 0.00 0.00 0.00 3.61
3751 4923 2.761208 ACGGAGGGAGTAGATGAACAAG 59.239 50.000 0.00 0.00 0.00 3.16
3752 4924 2.758979 GACGGAGGGAGTAGATGAACAA 59.241 50.000 0.00 0.00 0.00 2.83
3753 4925 2.376109 GACGGAGGGAGTAGATGAACA 58.624 52.381 0.00 0.00 0.00 3.18
3754 4926 1.682323 GGACGGAGGGAGTAGATGAAC 59.318 57.143 0.00 0.00 0.00 3.18
3755 4927 1.411216 GGGACGGAGGGAGTAGATGAA 60.411 57.143 0.00 0.00 0.00 2.57
3756 4928 0.185416 GGGACGGAGGGAGTAGATGA 59.815 60.000 0.00 0.00 0.00 2.92
3757 4929 0.106167 TGGGACGGAGGGAGTAGATG 60.106 60.000 0.00 0.00 0.00 2.90
3758 4930 0.186386 CTGGGACGGAGGGAGTAGAT 59.814 60.000 0.00 0.00 36.31 1.98
3759 4931 0.917821 TCTGGGACGGAGGGAGTAGA 60.918 60.000 0.00 0.00 39.80 2.59
3760 4932 1.613610 TCTGGGACGGAGGGAGTAG 59.386 63.158 0.00 0.00 39.80 2.57
3761 4933 3.845559 TCTGGGACGGAGGGAGTA 58.154 61.111 0.00 0.00 39.80 2.59
3768 4940 1.475280 CGTCTTACATTCTGGGACGGA 59.525 52.381 0.00 0.00 45.11 4.69
3769 4941 1.922570 CGTCTTACATTCTGGGACGG 58.077 55.000 0.00 0.00 43.69 4.79
3771 4943 5.684550 AAAAACGTCTTACATTCTGGGAC 57.315 39.130 0.00 0.00 0.00 4.46
3790 4962 7.316640 CGTCCCAAATGTAATGGTATCAAAAA 58.683 34.615 0.00 0.00 36.14 1.94
3791 4963 6.127591 CCGTCCCAAATGTAATGGTATCAAAA 60.128 38.462 0.00 0.00 36.14 2.44
3792 4964 5.358442 CCGTCCCAAATGTAATGGTATCAAA 59.642 40.000 0.00 0.00 36.14 2.69
3793 4965 4.884744 CCGTCCCAAATGTAATGGTATCAA 59.115 41.667 0.00 0.00 36.14 2.57
3794 4966 4.164413 TCCGTCCCAAATGTAATGGTATCA 59.836 41.667 0.00 0.00 36.14 2.15
3795 4967 4.710324 TCCGTCCCAAATGTAATGGTATC 58.290 43.478 0.00 0.00 36.14 2.24
3796 4968 4.445735 CCTCCGTCCCAAATGTAATGGTAT 60.446 45.833 0.00 0.00 36.14 2.73
3797 4969 3.118186 CCTCCGTCCCAAATGTAATGGTA 60.118 47.826 0.00 0.00 36.14 3.25
3798 4970 2.356741 CCTCCGTCCCAAATGTAATGGT 60.357 50.000 0.00 0.00 36.14 3.55
3799 4971 2.297701 CCTCCGTCCCAAATGTAATGG 58.702 52.381 0.00 0.00 37.71 3.16
3800 4972 2.092646 TCCCTCCGTCCCAAATGTAATG 60.093 50.000 0.00 0.00 0.00 1.90
3801 4973 2.172717 CTCCCTCCGTCCCAAATGTAAT 59.827 50.000 0.00 0.00 0.00 1.89
3802 4974 1.557832 CTCCCTCCGTCCCAAATGTAA 59.442 52.381 0.00 0.00 0.00 2.41
3803 4975 1.200519 CTCCCTCCGTCCCAAATGTA 58.799 55.000 0.00 0.00 0.00 2.29
3804 4976 0.840722 ACTCCCTCCGTCCCAAATGT 60.841 55.000 0.00 0.00 0.00 2.71
3805 4977 1.139058 CTACTCCCTCCGTCCCAAATG 59.861 57.143 0.00 0.00 0.00 2.32
3806 4978 1.273666 ACTACTCCCTCCGTCCCAAAT 60.274 52.381 0.00 0.00 0.00 2.32
3807 4979 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
3808 4980 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
3809 4981 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3810 4982 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
3811 4983 2.361643 ATGTACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3812 4984 5.181622 CAGATTATGTACTACTCCCTCCGTC 59.818 48.000 0.00 0.00 0.00 4.79
3813 4985 5.071370 CAGATTATGTACTACTCCCTCCGT 58.929 45.833 0.00 0.00 0.00 4.69
3814 4986 4.082679 GCAGATTATGTACTACTCCCTCCG 60.083 50.000 0.00 0.00 0.00 4.63
3815 4987 5.081032 AGCAGATTATGTACTACTCCCTCC 58.919 45.833 0.00 0.00 0.00 4.30
3816 4988 6.658188 AAGCAGATTATGTACTACTCCCTC 57.342 41.667 0.00 0.00 0.00 4.30
3817 4989 7.179338 CCATAAGCAGATTATGTACTACTCCCT 59.821 40.741 15.65 0.00 46.38 4.20
3818 4990 7.038941 ACCATAAGCAGATTATGTACTACTCCC 60.039 40.741 15.65 0.00 46.38 4.30
3819 4991 7.815068 CACCATAAGCAGATTATGTACTACTCC 59.185 40.741 15.65 0.00 46.38 3.85
3820 4992 7.815068 CCACCATAAGCAGATTATGTACTACTC 59.185 40.741 15.65 0.00 46.38 2.59
3821 4993 7.290248 ACCACCATAAGCAGATTATGTACTACT 59.710 37.037 15.65 0.00 46.38 2.57
3822 4994 7.442656 ACCACCATAAGCAGATTATGTACTAC 58.557 38.462 15.65 0.00 46.38 2.73
3823 4995 7.612065 ACCACCATAAGCAGATTATGTACTA 57.388 36.000 15.65 0.00 46.38 1.82
3824 4996 6.500589 ACCACCATAAGCAGATTATGTACT 57.499 37.500 15.65 0.00 46.38 2.73
3825 4997 7.148407 GCATACCACCATAAGCAGATTATGTAC 60.148 40.741 15.65 0.00 46.38 2.90
3826 4998 6.878923 GCATACCACCATAAGCAGATTATGTA 59.121 38.462 15.65 3.91 46.38 2.29
3827 4999 5.707298 GCATACCACCATAAGCAGATTATGT 59.293 40.000 15.65 3.43 46.38 2.29
3829 5001 4.937620 CGCATACCACCATAAGCAGATTAT 59.062 41.667 0.00 0.00 34.24 1.28
3830 5002 4.314961 CGCATACCACCATAAGCAGATTA 58.685 43.478 0.00 0.00 0.00 1.75
3831 5003 3.141398 CGCATACCACCATAAGCAGATT 58.859 45.455 0.00 0.00 0.00 2.40
3832 5004 2.550855 CCGCATACCACCATAAGCAGAT 60.551 50.000 0.00 0.00 0.00 2.90
3833 5005 1.202639 CCGCATACCACCATAAGCAGA 60.203 52.381 0.00 0.00 0.00 4.26
3834 5006 1.202639 TCCGCATACCACCATAAGCAG 60.203 52.381 0.00 0.00 0.00 4.24
3835 5007 0.833949 TCCGCATACCACCATAAGCA 59.166 50.000 0.00 0.00 0.00 3.91
3836 5008 1.202651 ACTCCGCATACCACCATAAGC 60.203 52.381 0.00 0.00 0.00 3.09
3837 5009 2.910688 ACTCCGCATACCACCATAAG 57.089 50.000 0.00 0.00 0.00 1.73
3838 5010 3.302161 ACTACTCCGCATACCACCATAA 58.698 45.455 0.00 0.00 0.00 1.90
3839 5011 2.953453 ACTACTCCGCATACCACCATA 58.047 47.619 0.00 0.00 0.00 2.74
3840 5012 1.789523 ACTACTCCGCATACCACCAT 58.210 50.000 0.00 0.00 0.00 3.55
3841 5013 2.026641 GTACTACTCCGCATACCACCA 58.973 52.381 0.00 0.00 0.00 4.17
3842 5014 2.026641 TGTACTACTCCGCATACCACC 58.973 52.381 0.00 0.00 0.00 4.61
3843 5015 5.443185 TTATGTACTACTCCGCATACCAC 57.557 43.478 0.00 0.00 0.00 4.16
3844 5016 6.008331 AGATTATGTACTACTCCGCATACCA 58.992 40.000 0.00 0.00 0.00 3.25
3845 5017 6.150641 TCAGATTATGTACTACTCCGCATACC 59.849 42.308 0.00 0.00 0.00 2.73
3846 5018 7.142306 TCAGATTATGTACTACTCCGCATAC 57.858 40.000 0.00 0.00 0.00 2.39
3847 5019 7.939784 ATCAGATTATGTACTACTCCGCATA 57.060 36.000 0.00 0.00 0.00 3.14
3848 5020 6.842437 ATCAGATTATGTACTACTCCGCAT 57.158 37.500 0.00 0.00 0.00 4.73
3849 5021 6.650427 AATCAGATTATGTACTACTCCGCA 57.350 37.500 0.00 0.00 0.00 5.69
3850 5022 7.702772 CCATAATCAGATTATGTACTACTCCGC 59.297 40.741 29.52 0.00 46.71 5.54
3851 5023 8.740906 ACCATAATCAGATTATGTACTACTCCG 58.259 37.037 29.52 18.57 46.71 4.63
3852 5024 9.862371 CACCATAATCAGATTATGTACTACTCC 57.138 37.037 29.52 0.00 46.71 3.85
3853 5025 9.862371 CCACCATAATCAGATTATGTACTACTC 57.138 37.037 29.52 0.00 46.71 2.59
3854 5026 9.381038 ACCACCATAATCAGATTATGTACTACT 57.619 33.333 29.52 12.68 46.71 2.57
3858 5030 8.883731 GCATACCACCATAATCAGATTATGTAC 58.116 37.037 29.52 11.01 46.71 2.90
3859 5031 8.046708 GGCATACCACCATAATCAGATTATGTA 58.953 37.037 29.52 20.29 41.93 2.29
3860 5032 6.886459 GGCATACCACCATAATCAGATTATGT 59.114 38.462 29.52 19.80 41.93 2.29
3861 5033 6.319658 GGGCATACCACCATAATCAGATTATG 59.680 42.308 26.98 26.98 43.79 1.90
3862 5034 6.426587 GGGCATACCACCATAATCAGATTAT 58.573 40.000 9.58 9.58 39.85 1.28
3863 5035 5.570641 CGGGCATACCACCATAATCAGATTA 60.571 44.000 5.29 5.29 40.22 1.75
3864 5036 4.666512 GGGCATACCACCATAATCAGATT 58.333 43.478 0.20 0.20 39.85 2.40
3865 5037 3.307691 CGGGCATACCACCATAATCAGAT 60.308 47.826 0.00 0.00 40.22 2.90
3866 5038 2.038426 CGGGCATACCACCATAATCAGA 59.962 50.000 0.00 0.00 40.22 3.27
3867 5039 2.224523 ACGGGCATACCACCATAATCAG 60.225 50.000 0.00 0.00 40.22 2.90
3868 5040 1.771854 ACGGGCATACCACCATAATCA 59.228 47.619 0.00 0.00 40.22 2.57
3869 5041 2.561478 ACGGGCATACCACCATAATC 57.439 50.000 0.00 0.00 40.22 1.75
3870 5042 2.441750 AGAACGGGCATACCACCATAAT 59.558 45.455 0.00 0.00 40.22 1.28
3871 5043 1.841277 AGAACGGGCATACCACCATAA 59.159 47.619 0.00 0.00 40.22 1.90
3879 5051 5.585047 AGTTTCAGAATAAGAACGGGCATAC 59.415 40.000 0.00 0.00 0.00 2.39
3896 5068 8.190784 ACAAGTTGAGGAACAAAATAGTTTCAG 58.809 33.333 10.54 0.00 40.36 3.02
3898 5070 8.926715 AACAAGTTGAGGAACAAAATAGTTTC 57.073 30.769 10.54 0.00 40.36 2.78
3909 5081 3.288092 AGTCCCAAACAAGTTGAGGAAC 58.712 45.455 10.54 2.56 39.87 3.62
3910 5082 3.662759 AGTCCCAAACAAGTTGAGGAA 57.337 42.857 10.54 0.00 39.87 3.36
3914 5086 7.654022 ATTCTTTTAGTCCCAAACAAGTTGA 57.346 32.000 10.54 0.00 39.87 3.18
3937 5109 7.449247 ACAGCCCAACAATAACATTAACAAAT 58.551 30.769 0.00 0.00 0.00 2.32
3944 5116 5.055812 CACAAACAGCCCAACAATAACATT 58.944 37.500 0.00 0.00 0.00 2.71
3945 5117 4.343526 TCACAAACAGCCCAACAATAACAT 59.656 37.500 0.00 0.00 0.00 2.71
3950 5122 2.101249 CAGTCACAAACAGCCCAACAAT 59.899 45.455 0.00 0.00 0.00 2.71
3951 5123 1.476085 CAGTCACAAACAGCCCAACAA 59.524 47.619 0.00 0.00 0.00 2.83
3963 5144 4.142491 ACGCAACAAATCTTTCAGTCACAA 60.142 37.500 0.00 0.00 0.00 3.33
3975 5156 9.914923 AAAGAATTTAAAAAGACGCAACAAATC 57.085 25.926 0.00 0.00 35.86 2.17
3980 5161 8.984678 CACAAAAAGAATTTAAAAAGACGCAAC 58.015 29.630 0.00 0.00 37.28 4.17
3981 5162 8.713271 ACACAAAAAGAATTTAAAAAGACGCAA 58.287 25.926 0.00 0.00 37.28 4.85
3983 5164 8.984678 CAACACAAAAAGAATTTAAAAAGACGC 58.015 29.630 0.00 0.00 37.28 5.19
3991 5172 7.816995 AGCAGACACAACACAAAAAGAATTTAA 59.183 29.630 0.00 0.00 37.28 1.52
3992 5173 7.319646 AGCAGACACAACACAAAAAGAATTTA 58.680 30.769 0.00 0.00 37.28 1.40
3993 5174 6.165577 AGCAGACACAACACAAAAAGAATTT 58.834 32.000 0.00 0.00 42.41 1.82
3994 5175 5.723295 AGCAGACACAACACAAAAAGAATT 58.277 33.333 0.00 0.00 0.00 2.17
3995 5176 5.329035 AGCAGACACAACACAAAAAGAAT 57.671 34.783 0.00 0.00 0.00 2.40
3997 5178 4.782019 AAGCAGACACAACACAAAAAGA 57.218 36.364 0.00 0.00 0.00 2.52
3998 5179 5.844301 AAAAGCAGACACAACACAAAAAG 57.156 34.783 0.00 0.00 0.00 2.27
4001 5182 5.270083 CGATAAAAGCAGACACAACACAAA 58.730 37.500 0.00 0.00 0.00 2.83
4002 5183 4.788201 GCGATAAAAGCAGACACAACACAA 60.788 41.667 0.00 0.00 34.19 3.33
4003 5184 3.303725 GCGATAAAAGCAGACACAACACA 60.304 43.478 0.00 0.00 34.19 3.72
4004 5185 3.226347 GCGATAAAAGCAGACACAACAC 58.774 45.455 0.00 0.00 34.19 3.32
4005 5186 2.096466 CGCGATAAAAGCAGACACAACA 60.096 45.455 0.00 0.00 34.19 3.33
4006 5187 2.096417 ACGCGATAAAAGCAGACACAAC 60.096 45.455 15.93 0.00 34.19 3.32
4007 5188 2.139917 ACGCGATAAAAGCAGACACAA 58.860 42.857 15.93 0.00 34.19 3.33
4008 5189 1.790755 ACGCGATAAAAGCAGACACA 58.209 45.000 15.93 0.00 34.19 3.72
4009 5190 2.921754 AGTACGCGATAAAAGCAGACAC 59.078 45.455 15.93 0.00 34.19 3.67
4010 5191 2.921121 CAGTACGCGATAAAAGCAGACA 59.079 45.455 15.93 0.00 34.19 3.41
4011 5192 3.176708 TCAGTACGCGATAAAAGCAGAC 58.823 45.455 15.93 0.00 34.19 3.51
4012 5193 3.497297 TCAGTACGCGATAAAAGCAGA 57.503 42.857 15.93 0.00 34.19 4.26
4013 5194 6.074302 ACAATATCAGTACGCGATAAAAGCAG 60.074 38.462 15.93 0.00 34.19 4.24
4014 5195 5.751509 ACAATATCAGTACGCGATAAAAGCA 59.248 36.000 15.93 0.00 34.19 3.91
4015 5196 6.144080 AGACAATATCAGTACGCGATAAAAGC 59.856 38.462 15.93 0.00 0.00 3.51
4016 5197 7.624706 AGACAATATCAGTACGCGATAAAAG 57.375 36.000 15.93 0.00 0.00 2.27
4017 5198 8.961092 GTTAGACAATATCAGTACGCGATAAAA 58.039 33.333 15.93 0.00 0.00 1.52
4018 5199 8.347771 AGTTAGACAATATCAGTACGCGATAAA 58.652 33.333 15.93 0.00 0.00 1.40
4019 5200 7.868775 AGTTAGACAATATCAGTACGCGATAA 58.131 34.615 15.93 0.00 0.00 1.75
4020 5201 7.430992 AGTTAGACAATATCAGTACGCGATA 57.569 36.000 15.93 0.00 0.00 2.92
4021 5202 6.315091 AGTTAGACAATATCAGTACGCGAT 57.685 37.500 15.93 0.00 0.00 4.58
4022 5203 5.746307 AGTTAGACAATATCAGTACGCGA 57.254 39.130 15.93 0.00 0.00 5.87
4023 5204 6.140895 CAGAAGTTAGACAATATCAGTACGCG 59.859 42.308 3.53 3.53 0.00 6.01
4024 5205 6.973474 ACAGAAGTTAGACAATATCAGTACGC 59.027 38.462 0.00 0.00 0.00 4.42
4065 5246 4.449131 ACACAGATATGACAATGCCAGAG 58.551 43.478 0.00 0.00 0.00 3.35
4066 5247 4.492494 ACACAGATATGACAATGCCAGA 57.508 40.909 0.00 0.00 0.00 3.86
4067 5248 4.397103 ACAACACAGATATGACAATGCCAG 59.603 41.667 0.00 0.00 0.00 4.85
4068 5249 4.156373 CACAACACAGATATGACAATGCCA 59.844 41.667 0.00 0.00 0.00 4.92
4069 5250 4.156556 ACACAACACAGATATGACAATGCC 59.843 41.667 0.00 0.00 0.00 4.40
4070 5251 5.300969 ACACAACACAGATATGACAATGC 57.699 39.130 0.00 0.00 0.00 3.56
4071 5252 7.019418 CAGAACACAACACAGATATGACAATG 58.981 38.462 0.00 0.00 0.00 2.82
4072 5253 6.149973 CCAGAACACAACACAGATATGACAAT 59.850 38.462 0.00 0.00 0.00 2.71
4073 5254 5.469760 CCAGAACACAACACAGATATGACAA 59.530 40.000 0.00 0.00 0.00 3.18
4074 5255 4.996758 CCAGAACACAACACAGATATGACA 59.003 41.667 0.00 0.00 0.00 3.58
4075 5256 4.142816 GCCAGAACACAACACAGATATGAC 60.143 45.833 0.00 0.00 0.00 3.06
4076 5257 4.002982 GCCAGAACACAACACAGATATGA 58.997 43.478 0.00 0.00 0.00 2.15
4077 5258 3.752747 TGCCAGAACACAACACAGATATG 59.247 43.478 0.00 0.00 0.00 1.78
4078 5259 4.019792 TGCCAGAACACAACACAGATAT 57.980 40.909 0.00 0.00 0.00 1.63
4079 5260 3.483808 TGCCAGAACACAACACAGATA 57.516 42.857 0.00 0.00 0.00 1.98
4080 5261 2.346766 TGCCAGAACACAACACAGAT 57.653 45.000 0.00 0.00 0.00 2.90
4081 5262 2.346766 ATGCCAGAACACAACACAGA 57.653 45.000 0.00 0.00 0.00 3.41
4082 5263 3.441496 AAATGCCAGAACACAACACAG 57.559 42.857 0.00 0.00 0.00 3.66
4083 5264 3.446873 AGAAAATGCCAGAACACAACACA 59.553 39.130 0.00 0.00 0.00 3.72
4084 5265 4.045636 AGAAAATGCCAGAACACAACAC 57.954 40.909 0.00 0.00 0.00 3.32
4085 5266 6.183360 ACAATAGAAAATGCCAGAACACAACA 60.183 34.615 0.00 0.00 0.00 3.33
4086 5267 6.215845 ACAATAGAAAATGCCAGAACACAAC 58.784 36.000 0.00 0.00 0.00 3.32
4087 5268 6.403866 ACAATAGAAAATGCCAGAACACAA 57.596 33.333 0.00 0.00 0.00 3.33
4088 5269 6.714810 ACTACAATAGAAAATGCCAGAACACA 59.285 34.615 0.00 0.00 0.00 3.72
4089 5270 7.145932 ACTACAATAGAAAATGCCAGAACAC 57.854 36.000 0.00 0.00 0.00 3.32
4090 5271 7.309133 CCAACTACAATAGAAAATGCCAGAACA 60.309 37.037 0.00 0.00 0.00 3.18
4091 5272 7.029563 CCAACTACAATAGAAAATGCCAGAAC 58.970 38.462 0.00 0.00 0.00 3.01
4092 5273 6.719370 ACCAACTACAATAGAAAATGCCAGAA 59.281 34.615 0.00 0.00 0.00 3.02
4093 5274 6.150976 CACCAACTACAATAGAAAATGCCAGA 59.849 38.462 0.00 0.00 0.00 3.86
4104 5285 4.517285 ACAGGCATCACCAACTACAATAG 58.483 43.478 0.00 0.00 43.14 1.73
4155 5336 2.729028 TTGGCTCCTGGTAATAAGGC 57.271 50.000 0.00 0.00 34.56 4.35
4253 5434 2.876091 CCGAGAAAGTTCGCACTGATA 58.124 47.619 0.00 0.00 39.19 2.15
4270 5482 2.736995 CGTTCGCCTTTCAGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
4271 5483 3.041940 ACGTTCGCCTTTCAGCCG 61.042 61.111 0.00 0.00 0.00 5.52
4275 5487 1.144276 TGACCACGTTCGCCTTTCA 59.856 52.632 0.00 0.00 0.00 2.69
4309 5521 0.655733 CCTTCTCGCTCGTCTCTCTC 59.344 60.000 0.00 0.00 0.00 3.20
4316 5528 1.068194 CAGAGTTTCCTTCTCGCTCGT 60.068 52.381 0.00 0.00 37.07 4.18
4319 5531 1.633774 TCCAGAGTTTCCTTCTCGCT 58.366 50.000 0.00 0.00 37.07 4.93
4329 5541 0.957395 CAGCACGCCATCCAGAGTTT 60.957 55.000 0.00 0.00 0.00 2.66
4370 5582 1.856265 GCCGCTTCCACTTCCACTTG 61.856 60.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.