Multiple sequence alignment - TraesCS3B01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G410700 chr3B 100.000 3164 0 0 1 3164 647478662 647475499 0.000000e+00 5843.0
1 TraesCS3B01G410700 chr3B 93.023 516 29 6 1 510 481919602 481920116 0.000000e+00 747.0
2 TraesCS3B01G410700 chr3B 90.075 534 40 13 9 538 4701143 4701667 0.000000e+00 680.0
3 TraesCS3B01G410700 chr3B 86.264 364 43 5 2634 2991 647468221 647467859 3.830000e-104 388.0
4 TraesCS3B01G410700 chr3A 90.531 1563 117 20 900 2453 627789663 627788123 0.000000e+00 2037.0
5 TraesCS3B01G410700 chr3A 93.878 196 12 0 2603 2798 627787994 627787799 2.390000e-76 296.0
6 TraesCS3B01G410700 chr3A 93.103 203 11 1 2796 2995 627787755 627787553 8.580000e-76 294.0
7 TraesCS3B01G410700 chr3A 91.667 84 7 0 2522 2605 627788113 627788030 1.990000e-22 117.0
8 TraesCS3B01G410700 chr3A 98.214 56 1 0 736 791 627789844 627789789 7.220000e-17 99.0
9 TraesCS3B01G410700 chr3A 91.429 70 6 0 813 882 627789721 627789652 2.600000e-16 97.1
10 TraesCS3B01G410700 chr3D 93.598 1312 57 11 913 2215 484730594 484729301 0.000000e+00 1932.0
11 TraesCS3B01G410700 chr3D 94.962 397 17 1 2603 2999 484728649 484728256 1.250000e-173 619.0
12 TraesCS3B01G410700 chr3D 85.950 363 42 6 2634 2991 484675869 484675511 2.300000e-101 379.0
13 TraesCS3B01G410700 chr3D 94.388 196 10 1 2404 2598 484728898 484728703 1.840000e-77 300.0
14 TraesCS3B01G410700 chr3D 80.685 409 59 14 2604 3004 484737754 484737358 1.840000e-77 300.0
15 TraesCS3B01G410700 chr2B 83.238 1229 161 23 995 2206 462953839 462952639 0.000000e+00 1086.0
16 TraesCS3B01G410700 chr2B 92.578 512 35 3 1 510 672628142 672627632 0.000000e+00 732.0
17 TraesCS3B01G410700 chr2B 81.750 800 105 18 1407 2206 464603822 464604580 5.760000e-177 630.0
18 TraesCS3B01G410700 chr2B 82.215 298 44 3 1123 1414 464598506 464598800 6.780000e-62 248.0
19 TraesCS3B01G410700 chr2A 84.233 1148 138 19 1075 2206 530675855 530676975 0.000000e+00 1077.0
20 TraesCS3B01G410700 chr2A 83.489 1175 149 23 1050 2206 528126322 528125175 0.000000e+00 1053.0
21 TraesCS3B01G410700 chr2A 99.355 155 1 0 3010 3164 213093506 213093660 6.680000e-72 281.0
22 TraesCS3B01G410700 chr2D 83.168 1212 157 25 1013 2206 391396372 391395190 0.000000e+00 1064.0
23 TraesCS3B01G410700 chr2D 84.003 1144 144 18 1075 2206 392683881 392684997 0.000000e+00 1062.0
24 TraesCS3B01G410700 chr2D 93.409 531 28 6 1 529 589637984 589638509 0.000000e+00 780.0
25 TraesCS3B01G410700 chr5B 93.346 511 30 2 1 510 534163991 534164498 0.000000e+00 752.0
26 TraesCS3B01G410700 chr5B 98.065 155 3 0 3010 3164 37808456 37808610 1.450000e-68 270.0
27 TraesCS3B01G410700 chr5B 98.065 155 3 0 3010 3164 484839523 484839369 1.450000e-68 270.0
28 TraesCS3B01G410700 chr7D 92.529 522 31 8 1 521 534372231 534371717 0.000000e+00 741.0
29 TraesCS3B01G410700 chrUn 92.759 511 34 2 1 510 85134439 85134947 0.000000e+00 736.0
30 TraesCS3B01G410700 chr1A 90.841 535 40 6 1 530 344215382 344215912 0.000000e+00 708.0
31 TraesCS3B01G410700 chr4A 90.998 511 43 3 1 510 43353994 43354502 0.000000e+00 686.0
32 TraesCS3B01G410700 chr1D 75.100 1000 215 17 1133 2127 447911189 447912159 1.350000e-118 436.0
33 TraesCS3B01G410700 chr7B 98.065 155 3 0 3010 3164 568103592 568103438 1.450000e-68 270.0
34 TraesCS3B01G410700 chr7B 97.419 155 4 0 3010 3164 14781569 14781415 6.730000e-67 265.0
35 TraesCS3B01G410700 chr4B 98.065 155 3 0 3010 3164 25777821 25777975 1.450000e-68 270.0
36 TraesCS3B01G410700 chr1B 97.419 155 4 0 3010 3164 7347966 7348120 6.730000e-67 265.0
37 TraesCS3B01G410700 chr1B 97.419 155 4 0 3010 3164 19214689 19214843 6.730000e-67 265.0
38 TraesCS3B01G410700 chr1B 97.419 155 4 0 3010 3164 48158562 48158408 6.730000e-67 265.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G410700 chr3B 647475499 647478662 3163 True 5843.000000 5843 100.000 1 3164 1 chr3B.!!$R2 3163
1 TraesCS3B01G410700 chr3B 481919602 481920116 514 False 747.000000 747 93.023 1 510 1 chr3B.!!$F2 509
2 TraesCS3B01G410700 chr3B 4701143 4701667 524 False 680.000000 680 90.075 9 538 1 chr3B.!!$F1 529
3 TraesCS3B01G410700 chr3A 627787553 627789844 2291 True 490.016667 2037 93.137 736 2995 6 chr3A.!!$R1 2259
4 TraesCS3B01G410700 chr3D 484728256 484730594 2338 True 950.333333 1932 94.316 913 2999 3 chr3D.!!$R3 2086
5 TraesCS3B01G410700 chr2B 462952639 462953839 1200 True 1086.000000 1086 83.238 995 2206 1 chr2B.!!$R1 1211
6 TraesCS3B01G410700 chr2B 672627632 672628142 510 True 732.000000 732 92.578 1 510 1 chr2B.!!$R2 509
7 TraesCS3B01G410700 chr2B 464603822 464604580 758 False 630.000000 630 81.750 1407 2206 1 chr2B.!!$F2 799
8 TraesCS3B01G410700 chr2A 530675855 530676975 1120 False 1077.000000 1077 84.233 1075 2206 1 chr2A.!!$F2 1131
9 TraesCS3B01G410700 chr2A 528125175 528126322 1147 True 1053.000000 1053 83.489 1050 2206 1 chr2A.!!$R1 1156
10 TraesCS3B01G410700 chr2D 391395190 391396372 1182 True 1064.000000 1064 83.168 1013 2206 1 chr2D.!!$R1 1193
11 TraesCS3B01G410700 chr2D 392683881 392684997 1116 False 1062.000000 1062 84.003 1075 2206 1 chr2D.!!$F1 1131
12 TraesCS3B01G410700 chr2D 589637984 589638509 525 False 780.000000 780 93.409 1 529 1 chr2D.!!$F2 528
13 TraesCS3B01G410700 chr5B 534163991 534164498 507 False 752.000000 752 93.346 1 510 1 chr5B.!!$F2 509
14 TraesCS3B01G410700 chr7D 534371717 534372231 514 True 741.000000 741 92.529 1 521 1 chr7D.!!$R1 520
15 TraesCS3B01G410700 chrUn 85134439 85134947 508 False 736.000000 736 92.759 1 510 1 chrUn.!!$F1 509
16 TraesCS3B01G410700 chr1A 344215382 344215912 530 False 708.000000 708 90.841 1 530 1 chr1A.!!$F1 529
17 TraesCS3B01G410700 chr4A 43353994 43354502 508 False 686.000000 686 90.998 1 510 1 chr4A.!!$F1 509
18 TraesCS3B01G410700 chr1D 447911189 447912159 970 False 436.000000 436 75.100 1133 2127 1 chr1D.!!$F1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
686 697 0.108329 ATCCTACTTGGCGTCGGTTG 60.108 55.0 0.00 0.0 35.26 3.77 F
697 708 0.109086 CGTCGGTTGTGCTCTGAGAT 60.109 55.0 9.28 0.0 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 1913 0.616371 CTCATCCCCCGTACCAACAA 59.384 55.0 0.00 0.0 0.00 2.83 R
2490 2814 1.113517 GGCTATGCCTCGGTCCACTA 61.114 60.0 0.73 0.0 46.69 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
317 325 8.310122 AGGAGTTTTTGGATTGCAATATACAT 57.690 30.769 12.97 0.00 0.00 2.29
340 351 8.012477 ACATATAACAAATTGATCAAGGGGGAT 58.988 33.333 14.54 5.69 0.00 3.85
411 422 1.630878 GAGGTGTCTGTTGGGGAAGAT 59.369 52.381 0.00 0.00 0.00 2.40
412 423 2.838202 GAGGTGTCTGTTGGGGAAGATA 59.162 50.000 0.00 0.00 0.00 1.98
484 495 6.094603 ACATTGCAATGGACTAAGAGAATCAC 59.905 38.462 35.85 0.00 40.70 3.06
510 521 5.544176 TGTGTCTCTCCTTTGTCTCCTTTAT 59.456 40.000 0.00 0.00 0.00 1.40
511 522 6.043243 TGTGTCTCTCCTTTGTCTCCTTTATT 59.957 38.462 0.00 0.00 0.00 1.40
512 523 7.234782 TGTGTCTCTCCTTTGTCTCCTTTATTA 59.765 37.037 0.00 0.00 0.00 0.98
513 524 7.546316 GTGTCTCTCCTTTGTCTCCTTTATTAC 59.454 40.741 0.00 0.00 0.00 1.89
514 525 7.455008 TGTCTCTCCTTTGTCTCCTTTATTACT 59.545 37.037 0.00 0.00 0.00 2.24
515 526 8.315482 GTCTCTCCTTTGTCTCCTTTATTACTT 58.685 37.037 0.00 0.00 0.00 2.24
516 527 8.881262 TCTCTCCTTTGTCTCCTTTATTACTTT 58.119 33.333 0.00 0.00 0.00 2.66
517 528 9.157104 CTCTCCTTTGTCTCCTTTATTACTTTC 57.843 37.037 0.00 0.00 0.00 2.62
518 529 7.817962 TCTCCTTTGTCTCCTTTATTACTTTCG 59.182 37.037 0.00 0.00 0.00 3.46
519 530 7.673180 TCCTTTGTCTCCTTTATTACTTTCGA 58.327 34.615 0.00 0.00 0.00 3.71
520 531 8.319146 TCCTTTGTCTCCTTTATTACTTTCGAT 58.681 33.333 0.00 0.00 0.00 3.59
521 532 8.947115 CCTTTGTCTCCTTTATTACTTTCGATT 58.053 33.333 0.00 0.00 0.00 3.34
558 569 7.744087 AAACCAAAAGATTCATAAAAAGGCC 57.256 32.000 0.00 0.00 0.00 5.19
559 570 6.686484 ACCAAAAGATTCATAAAAAGGCCT 57.314 33.333 0.00 0.00 0.00 5.19
560 571 6.701340 ACCAAAAGATTCATAAAAAGGCCTC 58.299 36.000 5.23 0.00 0.00 4.70
561 572 5.807011 CCAAAAGATTCATAAAAAGGCCTCG 59.193 40.000 5.23 0.00 0.00 4.63
562 573 4.639135 AAGATTCATAAAAAGGCCTCGC 57.361 40.909 5.23 0.00 0.00 5.03
563 574 3.620488 AGATTCATAAAAAGGCCTCGCA 58.380 40.909 5.23 0.00 0.00 5.10
564 575 3.629398 AGATTCATAAAAAGGCCTCGCAG 59.371 43.478 5.23 0.00 0.00 5.18
565 576 1.094785 TCATAAAAAGGCCTCGCAGC 58.905 50.000 5.23 0.00 0.00 5.25
633 644 9.672086 TTTTTGAAGAAATAATACACCTGTTCG 57.328 29.630 0.00 0.00 0.00 3.95
634 645 6.417191 TGAAGAAATAATACACCTGTTCGC 57.583 37.500 0.00 0.00 0.00 4.70
635 646 5.353123 TGAAGAAATAATACACCTGTTCGCC 59.647 40.000 0.00 0.00 0.00 5.54
636 647 4.839121 AGAAATAATACACCTGTTCGCCA 58.161 39.130 0.00 0.00 0.00 5.69
637 648 4.876107 AGAAATAATACACCTGTTCGCCAG 59.124 41.667 0.00 0.00 41.15 4.85
638 649 4.481368 AATAATACACCTGTTCGCCAGA 57.519 40.909 3.77 0.00 44.49 3.86
639 650 2.851263 AATACACCTGTTCGCCAGAA 57.149 45.000 3.77 0.00 44.49 3.02
640 651 2.386661 ATACACCTGTTCGCCAGAAG 57.613 50.000 3.77 0.00 44.49 2.85
641 652 0.320421 TACACCTGTTCGCCAGAAGC 60.320 55.000 3.77 0.00 44.49 3.86
642 653 1.597854 CACCTGTTCGCCAGAAGCA 60.598 57.895 3.77 0.00 44.49 3.91
643 654 1.302033 ACCTGTTCGCCAGAAGCAG 60.302 57.895 3.77 0.00 44.49 4.24
644 655 2.684843 CCTGTTCGCCAGAAGCAGC 61.685 63.158 3.77 0.00 44.49 5.25
645 656 1.670406 CTGTTCGCCAGAAGCAGCT 60.670 57.895 0.00 0.00 44.49 4.24
646 657 1.909141 CTGTTCGCCAGAAGCAGCTG 61.909 60.000 10.11 10.11 44.49 4.24
647 658 3.052082 TTCGCCAGAAGCAGCTGC 61.052 61.111 31.53 31.53 44.04 5.25
648 659 3.830464 TTCGCCAGAAGCAGCTGCA 62.830 57.895 38.24 14.33 45.16 4.41
649 660 4.099170 CGCCAGAAGCAGCTGCAC 62.099 66.667 38.24 29.52 45.16 4.57
650 661 2.981909 GCCAGAAGCAGCTGCACA 60.982 61.111 38.24 0.00 45.16 4.57
651 662 2.979197 GCCAGAAGCAGCTGCACAG 61.979 63.158 38.24 26.09 45.16 3.66
670 681 3.498676 CGAACCGCTCCAGATATCC 57.501 57.895 0.00 0.00 0.00 2.59
671 682 0.962489 CGAACCGCTCCAGATATCCT 59.038 55.000 0.00 0.00 0.00 3.24
672 683 2.160205 CGAACCGCTCCAGATATCCTA 58.840 52.381 0.00 0.00 0.00 2.94
673 684 2.095161 CGAACCGCTCCAGATATCCTAC 60.095 54.545 0.00 0.00 0.00 3.18
674 685 2.982339 ACCGCTCCAGATATCCTACT 57.018 50.000 0.00 0.00 0.00 2.57
675 686 3.246416 ACCGCTCCAGATATCCTACTT 57.754 47.619 0.00 0.00 0.00 2.24
676 687 2.894126 ACCGCTCCAGATATCCTACTTG 59.106 50.000 0.00 0.00 0.00 3.16
677 688 2.232452 CCGCTCCAGATATCCTACTTGG 59.768 54.545 0.00 0.14 37.10 3.61
678 689 2.353208 CGCTCCAGATATCCTACTTGGC 60.353 54.545 0.00 0.00 35.26 4.52
679 690 2.353208 GCTCCAGATATCCTACTTGGCG 60.353 54.545 0.00 0.00 35.26 5.69
680 691 2.894126 CTCCAGATATCCTACTTGGCGT 59.106 50.000 0.00 0.00 35.26 5.68
681 692 2.891580 TCCAGATATCCTACTTGGCGTC 59.108 50.000 0.00 0.00 35.26 5.19
682 693 2.351835 CCAGATATCCTACTTGGCGTCG 60.352 54.545 0.00 0.00 35.26 5.12
683 694 1.887198 AGATATCCTACTTGGCGTCGG 59.113 52.381 0.00 0.00 35.26 4.79
684 695 1.612463 GATATCCTACTTGGCGTCGGT 59.388 52.381 0.00 0.00 35.26 4.69
685 696 1.477553 TATCCTACTTGGCGTCGGTT 58.522 50.000 0.00 0.00 35.26 4.44
686 697 0.108329 ATCCTACTTGGCGTCGGTTG 60.108 55.000 0.00 0.00 35.26 3.77
687 698 1.005394 CCTACTTGGCGTCGGTTGT 60.005 57.895 0.00 0.00 0.00 3.32
688 699 1.289109 CCTACTTGGCGTCGGTTGTG 61.289 60.000 0.00 0.00 0.00 3.33
689 700 1.897398 CTACTTGGCGTCGGTTGTGC 61.897 60.000 0.00 0.00 0.00 4.57
690 701 2.372040 TACTTGGCGTCGGTTGTGCT 62.372 55.000 0.00 0.00 0.00 4.40
691 702 2.954753 CTTGGCGTCGGTTGTGCTC 61.955 63.158 0.00 0.00 0.00 4.26
692 703 3.454587 TTGGCGTCGGTTGTGCTCT 62.455 57.895 0.00 0.00 0.00 4.09
693 704 3.414700 GGCGTCGGTTGTGCTCTG 61.415 66.667 0.00 0.00 0.00 3.35
694 705 2.355837 GCGTCGGTTGTGCTCTGA 60.356 61.111 0.00 0.00 0.00 3.27
695 706 2.375766 GCGTCGGTTGTGCTCTGAG 61.376 63.158 0.00 0.00 0.00 3.35
696 707 1.285950 CGTCGGTTGTGCTCTGAGA 59.714 57.895 9.28 0.00 0.00 3.27
697 708 0.109086 CGTCGGTTGTGCTCTGAGAT 60.109 55.000 9.28 0.00 0.00 2.75
698 709 1.670087 CGTCGGTTGTGCTCTGAGATT 60.670 52.381 9.28 0.00 0.00 2.40
699 710 1.996191 GTCGGTTGTGCTCTGAGATTC 59.004 52.381 9.28 0.00 0.00 2.52
700 711 1.618343 TCGGTTGTGCTCTGAGATTCA 59.382 47.619 9.28 1.01 0.00 2.57
701 712 2.234661 TCGGTTGTGCTCTGAGATTCAT 59.765 45.455 9.28 0.00 0.00 2.57
702 713 2.350804 CGGTTGTGCTCTGAGATTCATG 59.649 50.000 9.28 0.00 0.00 3.07
703 714 3.341823 GGTTGTGCTCTGAGATTCATGT 58.658 45.455 9.28 0.00 0.00 3.21
704 715 3.126514 GGTTGTGCTCTGAGATTCATGTG 59.873 47.826 9.28 0.00 0.00 3.21
705 716 3.967332 TGTGCTCTGAGATTCATGTGA 57.033 42.857 9.28 0.00 0.00 3.58
706 717 3.593096 TGTGCTCTGAGATTCATGTGAC 58.407 45.455 9.28 0.00 0.00 3.67
707 718 2.602211 GTGCTCTGAGATTCATGTGACG 59.398 50.000 9.28 0.00 0.00 4.35
708 719 2.200067 GCTCTGAGATTCATGTGACGG 58.800 52.381 9.28 0.00 0.00 4.79
709 720 2.200067 CTCTGAGATTCATGTGACGGC 58.800 52.381 0.00 0.00 0.00 5.68
710 721 1.550072 TCTGAGATTCATGTGACGGCA 59.450 47.619 0.00 0.00 0.00 5.69
711 722 1.931841 CTGAGATTCATGTGACGGCAG 59.068 52.381 0.00 0.00 0.00 4.85
712 723 0.654683 GAGATTCATGTGACGGCAGC 59.345 55.000 0.00 0.00 0.00 5.25
713 724 1.086067 AGATTCATGTGACGGCAGCG 61.086 55.000 0.00 0.00 0.00 5.18
714 725 1.079197 ATTCATGTGACGGCAGCGA 60.079 52.632 0.00 0.00 0.00 4.93
715 726 1.086067 ATTCATGTGACGGCAGCGAG 61.086 55.000 0.00 0.00 0.00 5.03
716 727 3.190849 CATGTGACGGCAGCGAGG 61.191 66.667 0.00 0.00 0.00 4.63
717 728 4.457496 ATGTGACGGCAGCGAGGG 62.457 66.667 0.00 0.00 0.00 4.30
724 735 4.838152 GGCAGCGAGGGCATTCGA 62.838 66.667 13.75 0.00 43.03 3.71
725 736 2.590007 GCAGCGAGGGCATTCGAT 60.590 61.111 13.75 5.29 43.03 3.59
726 737 2.182842 GCAGCGAGGGCATTCGATT 61.183 57.895 13.75 0.00 43.03 3.34
727 738 1.645455 CAGCGAGGGCATTCGATTG 59.355 57.895 13.75 2.92 43.03 2.67
728 739 2.182842 AGCGAGGGCATTCGATTGC 61.183 57.895 21.12 21.12 43.03 3.56
729 740 2.628106 CGAGGGCATTCGATTGCG 59.372 61.111 22.05 8.04 43.71 4.85
733 744 2.653130 GGCATTCGATTGCGCTGC 60.653 61.111 22.05 8.12 43.71 5.25
734 745 2.406401 GCATTCGATTGCGCTGCT 59.594 55.556 15.73 0.00 40.42 4.24
775 786 1.446618 GCCGTCGTACCCAAATCGT 60.447 57.895 0.00 0.00 0.00 3.73
791 802 1.366679 TCGTAGCACCAGAGTCGTAG 58.633 55.000 0.00 0.00 0.00 3.51
792 803 0.248134 CGTAGCACCAGAGTCGTAGC 60.248 60.000 0.00 0.00 0.00 3.58
793 804 0.809385 GTAGCACCAGAGTCGTAGCA 59.191 55.000 0.00 0.00 0.00 3.49
794 805 0.809385 TAGCACCAGAGTCGTAGCAC 59.191 55.000 0.00 0.00 0.00 4.40
796 807 1.878656 GCACCAGAGTCGTAGCACCT 61.879 60.000 0.00 0.00 0.00 4.00
804 835 2.746277 CGTAGCACCTGGGGTTGC 60.746 66.667 0.00 0.00 31.02 4.17
826 857 5.926894 CGATAAGTTCGTTCGAAGATCAA 57.073 39.130 7.90 0.00 43.01 2.57
827 858 5.705390 CGATAAGTTCGTTCGAAGATCAAC 58.295 41.667 7.90 0.00 43.01 3.18
829 860 6.290644 CGATAAGTTCGTTCGAAGATCAACTC 60.291 42.308 7.90 0.00 43.01 3.01
831 862 2.257974 TCGTTCGAAGATCAACTCCG 57.742 50.000 0.00 0.00 35.04 4.63
832 863 1.135489 TCGTTCGAAGATCAACTCCGG 60.135 52.381 0.00 0.00 35.04 5.14
833 864 1.641577 GTTCGAAGATCAACTCCGGG 58.358 55.000 0.00 0.00 35.04 5.73
874 931 3.811307 GAACCGCTTTCGAAACAAAAC 57.189 42.857 6.47 0.00 38.10 2.43
875 932 2.923605 ACCGCTTTCGAAACAAAACA 57.076 40.000 6.47 0.00 38.10 2.83
876 933 2.792749 ACCGCTTTCGAAACAAAACAG 58.207 42.857 6.47 0.00 38.10 3.16
877 934 2.162809 ACCGCTTTCGAAACAAAACAGT 59.837 40.909 6.47 0.00 38.10 3.55
878 935 3.374678 ACCGCTTTCGAAACAAAACAGTA 59.625 39.130 6.47 0.00 38.10 2.74
879 936 3.722289 CCGCTTTCGAAACAAAACAGTAC 59.278 43.478 6.47 0.00 38.10 2.73
880 937 4.495184 CCGCTTTCGAAACAAAACAGTACT 60.495 41.667 6.47 0.00 38.10 2.73
881 938 5.276963 CCGCTTTCGAAACAAAACAGTACTA 60.277 40.000 6.47 0.00 38.10 1.82
882 939 5.614382 CGCTTTCGAAACAAAACAGTACTAC 59.386 40.000 6.47 0.00 38.10 2.73
883 940 5.614382 GCTTTCGAAACAAAACAGTACTACG 59.386 40.000 6.47 0.00 0.00 3.51
884 941 6.508404 GCTTTCGAAACAAAACAGTACTACGA 60.508 38.462 6.47 0.00 0.00 3.43
885 942 5.871531 TCGAAACAAAACAGTACTACGAC 57.128 39.130 0.00 0.00 0.00 4.34
886 943 4.739716 TCGAAACAAAACAGTACTACGACC 59.260 41.667 0.00 0.00 0.00 4.79
887 944 4.374309 CGAAACAAAACAGTACTACGACCG 60.374 45.833 0.00 0.00 0.00 4.79
888 945 3.715628 ACAAAACAGTACTACGACCGT 57.284 42.857 0.00 0.00 0.00 4.83
889 946 3.632189 ACAAAACAGTACTACGACCGTC 58.368 45.455 0.00 0.00 0.00 4.79
890 947 3.066621 ACAAAACAGTACTACGACCGTCA 59.933 43.478 0.00 0.00 0.00 4.35
891 948 3.988379 AAACAGTACTACGACCGTCAA 57.012 42.857 0.00 0.00 0.00 3.18
892 949 3.988379 AACAGTACTACGACCGTCAAA 57.012 42.857 0.00 0.00 0.00 2.69
893 950 3.549299 ACAGTACTACGACCGTCAAAG 57.451 47.619 0.00 0.00 0.00 2.77
894 951 3.141398 ACAGTACTACGACCGTCAAAGA 58.859 45.455 0.00 0.00 0.00 2.52
895 952 3.565482 ACAGTACTACGACCGTCAAAGAA 59.435 43.478 0.00 0.00 0.00 2.52
896 953 4.156915 CAGTACTACGACCGTCAAAGAAG 58.843 47.826 0.00 0.00 0.00 2.85
897 954 2.061740 ACTACGACCGTCAAAGAAGC 57.938 50.000 0.00 0.00 0.00 3.86
898 955 1.338973 ACTACGACCGTCAAAGAAGCA 59.661 47.619 0.00 0.00 0.00 3.91
899 956 2.223876 ACTACGACCGTCAAAGAAGCAA 60.224 45.455 0.00 0.00 0.00 3.91
900 957 1.658994 ACGACCGTCAAAGAAGCAAA 58.341 45.000 0.00 0.00 0.00 3.68
901 958 2.011222 ACGACCGTCAAAGAAGCAAAA 58.989 42.857 0.00 0.00 0.00 2.44
902 959 2.420722 ACGACCGTCAAAGAAGCAAAAA 59.579 40.909 0.00 0.00 0.00 1.94
984 1041 3.682718 GCTTGCGTCCAGGCCATATATAT 60.683 47.826 5.01 0.00 38.04 0.86
985 1042 4.517285 CTTGCGTCCAGGCCATATATATT 58.483 43.478 5.01 0.00 0.00 1.28
1069 1129 1.270826 TCTGCATGGCGATACTAGAGC 59.729 52.381 0.00 0.00 0.00 4.09
1089 1149 1.261938 CCACCATCCACGTCCCTACA 61.262 60.000 0.00 0.00 0.00 2.74
1505 1583 4.090588 GGCCATCGTCGGGTCCAA 62.091 66.667 0.00 0.00 0.00 3.53
1524 1602 2.034221 AAGAAGAAGGGGCGCCAC 59.966 61.111 30.85 28.13 0.00 5.01
1932 2012 2.375766 CCTGCACGCTCAAGACGTC 61.376 63.158 7.70 7.70 42.96 4.34
1962 2042 0.889186 TGGAGGCCGAGCAGTTTTTC 60.889 55.000 0.00 0.00 0.00 2.29
2148 2229 2.246841 TCGTGCAATGCAAGACCTG 58.753 52.632 19.18 1.62 41.52 4.00
2175 2256 8.630054 ATGGTCTGTTTTAGCAATTTGTAGTA 57.370 30.769 0.00 0.00 0.00 1.82
2176 2257 8.094798 TGGTCTGTTTTAGCAATTTGTAGTAG 57.905 34.615 0.00 0.00 0.00 2.57
2177 2258 7.717875 TGGTCTGTTTTAGCAATTTGTAGTAGT 59.282 33.333 0.00 0.00 0.00 2.73
2179 2260 8.989980 GTCTGTTTTAGCAATTTGTAGTAGTCT 58.010 33.333 0.00 0.00 0.00 3.24
2201 2282 7.661437 AGTCTACATCTTACTGCAAATTTGTCA 59.339 33.333 19.03 15.37 0.00 3.58
2316 2595 9.956720 AGATTAAGAAAATGTTGTGTTTCTCTG 57.043 29.630 0.00 0.00 41.98 3.35
2317 2596 9.950680 GATTAAGAAAATGTTGTGTTTCTCTGA 57.049 29.630 0.00 0.00 41.98 3.27
2318 2597 9.956720 ATTAAGAAAATGTTGTGTTTCTCTGAG 57.043 29.630 0.00 0.00 41.98 3.35
2319 2598 7.396540 AAGAAAATGTTGTGTTTCTCTGAGT 57.603 32.000 4.32 0.00 41.98 3.41
2320 2599 7.020914 AGAAAATGTTGTGTTTCTCTGAGTC 57.979 36.000 4.32 0.00 39.34 3.36
2321 2600 5.409643 AAATGTTGTGTTTCTCTGAGTCG 57.590 39.130 4.32 0.00 0.00 4.18
2322 2601 3.520290 TGTTGTGTTTCTCTGAGTCGT 57.480 42.857 4.32 0.00 0.00 4.34
2323 2602 4.642445 TGTTGTGTTTCTCTGAGTCGTA 57.358 40.909 4.32 0.00 0.00 3.43
2324 2603 5.196341 TGTTGTGTTTCTCTGAGTCGTAT 57.804 39.130 4.32 0.00 0.00 3.06
2325 2604 6.321848 TGTTGTGTTTCTCTGAGTCGTATA 57.678 37.500 4.32 0.00 0.00 1.47
2326 2605 6.920817 TGTTGTGTTTCTCTGAGTCGTATAT 58.079 36.000 4.32 0.00 0.00 0.86
2327 2606 6.806739 TGTTGTGTTTCTCTGAGTCGTATATG 59.193 38.462 4.32 0.00 0.00 1.78
2328 2607 5.891451 TGTGTTTCTCTGAGTCGTATATGG 58.109 41.667 4.32 0.00 0.00 2.74
2329 2608 5.650703 TGTGTTTCTCTGAGTCGTATATGGA 59.349 40.000 4.32 0.00 0.00 3.41
2330 2609 6.152154 TGTGTTTCTCTGAGTCGTATATGGAA 59.848 38.462 4.32 0.00 0.00 3.53
2331 2610 7.033791 GTGTTTCTCTGAGTCGTATATGGAAA 58.966 38.462 4.32 0.00 0.00 3.13
2332 2611 7.707035 GTGTTTCTCTGAGTCGTATATGGAAAT 59.293 37.037 4.32 0.00 0.00 2.17
2333 2612 8.909923 TGTTTCTCTGAGTCGTATATGGAAATA 58.090 33.333 4.32 0.00 0.00 1.40
2334 2613 9.745880 GTTTCTCTGAGTCGTATATGGAAATAA 57.254 33.333 4.32 0.00 0.00 1.40
2375 2654 5.592688 TGGTTAAACAGCAAGGGATATAAGC 59.407 40.000 0.00 0.00 0.00 3.09
2376 2655 5.828328 GGTTAAACAGCAAGGGATATAAGCT 59.172 40.000 0.00 0.00 35.63 3.74
2378 2657 7.665974 GGTTAAACAGCAAGGGATATAAGCTAT 59.334 37.037 0.00 0.00 33.59 2.97
2436 2759 3.803186 AGAAGCATTATCATCCTGGGG 57.197 47.619 0.00 0.00 0.00 4.96
2487 2811 6.712095 TGGACATCAGATTTCATAGTATTGCC 59.288 38.462 0.00 0.00 0.00 4.52
2490 2814 8.701908 ACATCAGATTTCATAGTATTGCCAAT 57.298 30.769 0.00 0.00 0.00 3.16
2557 2881 0.878523 CTGCACACCCGTCTTTCGAA 60.879 55.000 0.00 0.00 42.86 3.71
2563 2887 1.117142 ACCCGTCTTTCGAACCTCCA 61.117 55.000 0.00 0.00 42.86 3.86
2617 2990 1.530293 GCGATCATGAATGAGGCTCAC 59.470 52.381 21.37 8.88 40.64 3.51
2629 3002 6.889177 TGAATGAGGCTCACACCAAAATATTA 59.111 34.615 21.37 0.00 0.00 0.98
2630 3003 6.699575 ATGAGGCTCACACCAAAATATTAC 57.300 37.500 21.37 0.00 0.00 1.89
2631 3004 5.815581 TGAGGCTCACACCAAAATATTACT 58.184 37.500 14.43 0.00 0.00 2.24
2766 3139 7.611213 AATAACACACCAGCACTAAATAGTC 57.389 36.000 0.00 0.00 33.46 2.59
2822 3241 2.697751 AGATGGTCATAGTCACTCTGCC 59.302 50.000 0.00 0.00 0.00 4.85
2884 3306 2.162408 GCTTCAAACCACTGATACCTGC 59.838 50.000 0.00 0.00 0.00 4.85
2948 3370 8.517878 AGTATTAACTTCAGACTTGCGTAACTA 58.482 33.333 0.00 0.00 29.00 2.24
2954 3376 6.640092 ACTTCAGACTTGCGTAACTAGTAAAC 59.360 38.462 0.00 0.00 34.29 2.01
3024 3446 8.728088 AATAATAACAAGAAAAGAACTGCGTG 57.272 30.769 0.00 0.00 0.00 5.34
3025 3447 5.751243 ATAACAAGAAAAGAACTGCGTGT 57.249 34.783 0.00 0.00 0.00 4.49
3026 3448 3.675467 ACAAGAAAAGAACTGCGTGTC 57.325 42.857 0.00 0.00 0.00 3.67
3027 3449 3.270877 ACAAGAAAAGAACTGCGTGTCT 58.729 40.909 0.00 0.00 0.00 3.41
3028 3450 3.309954 ACAAGAAAAGAACTGCGTGTCTC 59.690 43.478 0.00 0.00 0.00 3.36
3029 3451 3.460857 AGAAAAGAACTGCGTGTCTCT 57.539 42.857 0.00 0.00 0.00 3.10
3030 3452 3.126831 AGAAAAGAACTGCGTGTCTCTG 58.873 45.455 0.00 0.00 0.00 3.35
3031 3453 1.871080 AAAGAACTGCGTGTCTCTGG 58.129 50.000 0.00 0.00 0.00 3.86
3032 3454 1.040646 AAGAACTGCGTGTCTCTGGA 58.959 50.000 0.00 0.00 0.00 3.86
3033 3455 1.261480 AGAACTGCGTGTCTCTGGAT 58.739 50.000 0.00 0.00 0.00 3.41
3034 3456 1.067283 AGAACTGCGTGTCTCTGGATG 60.067 52.381 0.00 0.00 0.00 3.51
3035 3457 0.969149 AACTGCGTGTCTCTGGATGA 59.031 50.000 0.00 0.00 0.00 2.92
3036 3458 0.529833 ACTGCGTGTCTCTGGATGAG 59.470 55.000 0.00 0.00 43.96 2.90
3037 3459 0.529833 CTGCGTGTCTCTGGATGAGT 59.470 55.000 0.00 0.00 43.13 3.41
3038 3460 0.528017 TGCGTGTCTCTGGATGAGTC 59.472 55.000 0.00 0.00 43.13 3.36
3039 3461 0.179124 GCGTGTCTCTGGATGAGTCC 60.179 60.000 0.00 0.00 45.31 3.85
3049 3471 0.543749 GGATGAGTCCAGGGTTGAGG 59.456 60.000 0.00 0.00 44.42 3.86
3050 3472 1.573108 GATGAGTCCAGGGTTGAGGA 58.427 55.000 0.00 0.00 0.00 3.71
3051 3473 2.122768 GATGAGTCCAGGGTTGAGGAT 58.877 52.381 0.00 0.00 36.11 3.24
3052 3474 1.279496 TGAGTCCAGGGTTGAGGATG 58.721 55.000 0.00 0.00 36.11 3.51
3053 3475 1.280457 GAGTCCAGGGTTGAGGATGT 58.720 55.000 0.00 0.00 36.11 3.06
3054 3476 1.630878 GAGTCCAGGGTTGAGGATGTT 59.369 52.381 0.00 0.00 36.11 2.71
3055 3477 1.630878 AGTCCAGGGTTGAGGATGTTC 59.369 52.381 0.00 0.00 36.11 3.18
3056 3478 0.991920 TCCAGGGTTGAGGATGTTCC 59.008 55.000 0.00 0.00 36.58 3.62
3066 3488 1.649321 AGGATGTTCCTCAGCTCACA 58.351 50.000 0.00 0.00 45.66 3.58
3067 3489 1.554160 AGGATGTTCCTCAGCTCACAG 59.446 52.381 0.00 0.00 45.66 3.66
3068 3490 1.367659 GATGTTCCTCAGCTCACAGC 58.632 55.000 0.00 0.00 42.84 4.40
3077 3499 2.343758 GCTCACAGCGGTGGAGAA 59.656 61.111 26.71 8.30 45.32 2.87
3078 3500 1.078848 GCTCACAGCGGTGGAGAAT 60.079 57.895 26.71 3.41 45.32 2.40
3079 3501 1.364626 GCTCACAGCGGTGGAGAATG 61.365 60.000 26.71 14.36 45.32 2.67
3080 3502 0.247460 CTCACAGCGGTGGAGAATGA 59.753 55.000 20.20 11.74 45.32 2.57
3081 3503 0.904649 TCACAGCGGTGGAGAATGAT 59.095 50.000 20.20 0.00 45.32 2.45
3082 3504 2.101415 CTCACAGCGGTGGAGAATGATA 59.899 50.000 20.20 0.00 45.32 2.15
3083 3505 2.700371 TCACAGCGGTGGAGAATGATAT 59.300 45.455 20.20 0.00 45.32 1.63
3084 3506 3.134623 TCACAGCGGTGGAGAATGATATT 59.865 43.478 20.20 0.00 45.32 1.28
3085 3507 3.496130 CACAGCGGTGGAGAATGATATTC 59.504 47.826 20.20 0.00 41.45 1.75
3086 3508 3.389329 ACAGCGGTGGAGAATGATATTCT 59.611 43.478 20.20 3.86 0.00 2.40
3087 3509 4.141620 ACAGCGGTGGAGAATGATATTCTT 60.142 41.667 20.20 0.00 0.00 2.52
3088 3510 5.070446 ACAGCGGTGGAGAATGATATTCTTA 59.930 40.000 20.20 0.00 0.00 2.10
3089 3511 5.406780 CAGCGGTGGAGAATGATATTCTTAC 59.593 44.000 6.74 7.94 0.00 2.34
3090 3512 4.386049 GCGGTGGAGAATGATATTCTTACG 59.614 45.833 5.62 8.73 0.00 3.18
3091 3513 4.923871 CGGTGGAGAATGATATTCTTACGG 59.076 45.833 5.62 8.45 0.00 4.02
3092 3514 4.691216 GGTGGAGAATGATATTCTTACGGC 59.309 45.833 5.62 0.00 0.00 5.68
3093 3515 5.511545 GGTGGAGAATGATATTCTTACGGCT 60.512 44.000 5.62 0.00 0.00 5.52
3094 3516 5.635700 GTGGAGAATGATATTCTTACGGCTC 59.364 44.000 5.62 0.00 0.00 4.70
3095 3517 5.172205 GGAGAATGATATTCTTACGGCTCC 58.828 45.833 5.62 0.00 0.00 4.70
3096 3518 5.046950 GGAGAATGATATTCTTACGGCTCCT 60.047 44.000 5.62 0.00 36.24 3.69
3097 3519 6.426646 AGAATGATATTCTTACGGCTCCTT 57.573 37.500 0.00 0.00 0.00 3.36
3098 3520 6.831976 AGAATGATATTCTTACGGCTCCTTT 58.168 36.000 0.00 0.00 0.00 3.11
3099 3521 6.931840 AGAATGATATTCTTACGGCTCCTTTC 59.068 38.462 0.00 0.00 0.00 2.62
3100 3522 5.871396 TGATATTCTTACGGCTCCTTTCT 57.129 39.130 0.00 0.00 0.00 2.52
3101 3523 5.844004 TGATATTCTTACGGCTCCTTTCTC 58.156 41.667 0.00 0.00 0.00 2.87
3102 3524 3.545366 ATTCTTACGGCTCCTTTCTCC 57.455 47.619 0.00 0.00 0.00 3.71
3104 3526 0.815734 CTTACGGCTCCTTTCTCCGA 59.184 55.000 6.91 0.00 45.53 4.55
3105 3527 0.815734 TTACGGCTCCTTTCTCCGAG 59.184 55.000 6.91 0.00 45.53 4.63
3106 3528 0.034767 TACGGCTCCTTTCTCCGAGA 60.035 55.000 6.91 0.00 45.53 4.04
3107 3529 0.898789 ACGGCTCCTTTCTCCGAGAA 60.899 55.000 6.75 6.75 45.53 2.87
3108 3530 0.246635 CGGCTCCTTTCTCCGAGAAA 59.753 55.000 20.03 20.03 45.53 2.52
3123 3545 0.988063 AGAAAGAGGTTCTGGAGGCC 59.012 55.000 0.00 0.00 45.29 5.19
3124 3546 0.693049 GAAAGAGGTTCTGGAGGCCA 59.307 55.000 5.01 0.00 33.03 5.36
3125 3547 1.283321 GAAAGAGGTTCTGGAGGCCAT 59.717 52.381 5.01 0.00 33.03 4.40
3126 3548 1.376649 AAGAGGTTCTGGAGGCCATT 58.623 50.000 5.01 0.00 30.82 3.16
3127 3549 1.376649 AGAGGTTCTGGAGGCCATTT 58.623 50.000 5.01 0.00 30.82 2.32
3128 3550 1.283321 AGAGGTTCTGGAGGCCATTTC 59.717 52.381 5.01 0.00 30.82 2.17
3129 3551 0.035056 AGGTTCTGGAGGCCATTTCG 60.035 55.000 5.01 0.00 30.82 3.46
3130 3552 1.657751 GGTTCTGGAGGCCATTTCGC 61.658 60.000 5.01 0.00 30.82 4.70
3131 3553 0.960364 GTTCTGGAGGCCATTTCGCA 60.960 55.000 5.01 0.00 30.82 5.10
3132 3554 0.251121 TTCTGGAGGCCATTTCGCAA 60.251 50.000 5.01 0.00 30.82 4.85
3133 3555 0.251121 TCTGGAGGCCATTTCGCAAA 60.251 50.000 5.01 0.00 30.82 3.68
3134 3556 0.819582 CTGGAGGCCATTTCGCAAAT 59.180 50.000 5.01 0.00 30.82 2.32
3135 3557 0.531657 TGGAGGCCATTTCGCAAATG 59.468 50.000 5.01 12.10 46.09 2.32
3149 3571 5.837586 TCGCAAATGAAAAATAACAAGGC 57.162 34.783 0.00 0.00 0.00 4.35
3150 3572 4.384247 TCGCAAATGAAAAATAACAAGGCG 59.616 37.500 0.00 0.00 40.79 5.52
3151 3573 4.393934 GCAAATGAAAAATAACAAGGCGC 58.606 39.130 0.00 0.00 0.00 6.53
3152 3574 4.668941 GCAAATGAAAAATAACAAGGCGCC 60.669 41.667 21.89 21.89 0.00 6.53
3153 3575 2.339728 TGAAAAATAACAAGGCGCCG 57.660 45.000 23.20 10.77 0.00 6.46
3154 3576 1.068194 TGAAAAATAACAAGGCGCCGG 60.068 47.619 23.20 20.23 0.00 6.13
3155 3577 0.245266 AAAAATAACAAGGCGCCGGG 59.755 50.000 23.20 19.83 0.00 5.73
3156 3578 2.220615 AAAATAACAAGGCGCCGGGC 62.221 55.000 23.20 9.54 42.51 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 179 4.098960 AGAAACCATATGACATACGTCCGT 59.901 41.667 3.65 0.00 41.85 4.69
220 225 5.163395 TGCCACCGAAAACTCCTTTAAAAAT 60.163 36.000 0.00 0.00 0.00 1.82
271 278 5.060506 CCTTTTAAAAACCCTGCGGAAAAT 58.939 37.500 1.66 0.00 0.00 1.82
275 282 2.888414 CTCCTTTTAAAAACCCTGCGGA 59.112 45.455 1.66 2.82 0.00 5.54
317 325 7.843760 ACAATCCCCCTTGATCAATTTGTTATA 59.156 33.333 8.96 0.00 0.00 0.98
320 328 4.845796 ACAATCCCCCTTGATCAATTTGTT 59.154 37.500 8.96 0.00 0.00 2.83
323 331 6.959366 TCTTAACAATCCCCCTTGATCAATTT 59.041 34.615 8.96 0.00 0.00 1.82
411 422 4.280789 AGGGGTATGTTGAGGAGACATA 57.719 45.455 0.00 0.00 38.58 2.29
412 423 3.136641 AGGGGTATGTTGAGGAGACAT 57.863 47.619 0.00 0.00 40.59 3.06
484 495 3.323403 AGGAGACAAAGGAGAGACACAAG 59.677 47.826 0.00 0.00 0.00 3.16
532 543 9.278978 GGCCTTTTTATGAATCTTTTGGTTTAA 57.721 29.630 0.00 0.00 0.00 1.52
533 544 8.655901 AGGCCTTTTTATGAATCTTTTGGTTTA 58.344 29.630 0.00 0.00 0.00 2.01
534 545 7.517320 AGGCCTTTTTATGAATCTTTTGGTTT 58.483 30.769 0.00 0.00 0.00 3.27
535 546 7.078249 AGGCCTTTTTATGAATCTTTTGGTT 57.922 32.000 0.00 0.00 0.00 3.67
536 547 6.572314 CGAGGCCTTTTTATGAATCTTTTGGT 60.572 38.462 6.77 0.00 0.00 3.67
537 548 5.807011 CGAGGCCTTTTTATGAATCTTTTGG 59.193 40.000 6.77 0.00 0.00 3.28
538 549 5.289434 GCGAGGCCTTTTTATGAATCTTTTG 59.711 40.000 6.77 0.00 0.00 2.44
539 550 5.047377 TGCGAGGCCTTTTTATGAATCTTTT 60.047 36.000 6.77 0.00 0.00 2.27
540 551 4.462483 TGCGAGGCCTTTTTATGAATCTTT 59.538 37.500 6.77 0.00 0.00 2.52
541 552 4.016444 TGCGAGGCCTTTTTATGAATCTT 58.984 39.130 6.77 0.00 0.00 2.40
542 553 3.620488 TGCGAGGCCTTTTTATGAATCT 58.380 40.909 6.77 0.00 0.00 2.40
543 554 3.793465 GCTGCGAGGCCTTTTTATGAATC 60.793 47.826 6.77 0.00 0.00 2.52
544 555 2.099756 GCTGCGAGGCCTTTTTATGAAT 59.900 45.455 6.77 0.00 0.00 2.57
545 556 1.472480 GCTGCGAGGCCTTTTTATGAA 59.528 47.619 6.77 0.00 0.00 2.57
546 557 1.094785 GCTGCGAGGCCTTTTTATGA 58.905 50.000 6.77 0.00 0.00 2.15
547 558 3.629858 GCTGCGAGGCCTTTTTATG 57.370 52.632 6.77 0.00 0.00 1.90
607 618 9.672086 CGAACAGGTGTATTATTTCTTCAAAAA 57.328 29.630 0.00 0.00 0.00 1.94
608 619 7.806014 GCGAACAGGTGTATTATTTCTTCAAAA 59.194 33.333 0.00 0.00 0.00 2.44
609 620 7.302524 GCGAACAGGTGTATTATTTCTTCAAA 58.697 34.615 0.00 0.00 0.00 2.69
610 621 6.128117 GGCGAACAGGTGTATTATTTCTTCAA 60.128 38.462 0.00 0.00 0.00 2.69
611 622 5.353123 GGCGAACAGGTGTATTATTTCTTCA 59.647 40.000 0.00 0.00 0.00 3.02
612 623 5.353123 TGGCGAACAGGTGTATTATTTCTTC 59.647 40.000 0.00 0.00 0.00 2.87
613 624 5.250200 TGGCGAACAGGTGTATTATTTCTT 58.750 37.500 0.00 0.00 0.00 2.52
614 625 4.839121 TGGCGAACAGGTGTATTATTTCT 58.161 39.130 0.00 0.00 0.00 2.52
615 626 5.156804 CTGGCGAACAGGTGTATTATTTC 57.843 43.478 0.00 0.00 43.70 2.17
628 639 1.962822 CAGCTGCTTCTGGCGAACA 60.963 57.895 0.00 0.00 45.43 3.18
629 640 2.866028 CAGCTGCTTCTGGCGAAC 59.134 61.111 0.00 0.00 45.43 3.95
630 641 3.052082 GCAGCTGCTTCTGGCGAA 61.052 61.111 31.33 0.00 45.43 4.70
631 642 4.318949 TGCAGCTGCTTCTGGCGA 62.319 61.111 36.61 13.65 45.43 5.54
632 643 4.099170 GTGCAGCTGCTTCTGGCG 62.099 66.667 36.61 0.00 45.43 5.69
633 644 2.979197 CTGTGCAGCTGCTTCTGGC 61.979 63.158 36.61 19.87 42.66 4.85
634 645 3.264947 CTGTGCAGCTGCTTCTGG 58.735 61.111 36.61 21.00 42.66 3.86
652 663 0.962489 AGGATATCTGGAGCGGTTCG 59.038 55.000 2.05 0.00 0.00 3.95
653 664 3.158676 AGTAGGATATCTGGAGCGGTTC 58.841 50.000 2.05 0.00 0.00 3.62
654 665 3.246416 AGTAGGATATCTGGAGCGGTT 57.754 47.619 2.05 0.00 0.00 4.44
655 666 2.894126 CAAGTAGGATATCTGGAGCGGT 59.106 50.000 2.05 0.00 0.00 5.68
656 667 2.232452 CCAAGTAGGATATCTGGAGCGG 59.768 54.545 2.05 0.00 41.22 5.52
657 668 2.353208 GCCAAGTAGGATATCTGGAGCG 60.353 54.545 11.19 0.00 41.22 5.03
658 669 2.353208 CGCCAAGTAGGATATCTGGAGC 60.353 54.545 11.19 2.05 41.22 4.70
659 670 2.894126 ACGCCAAGTAGGATATCTGGAG 59.106 50.000 11.19 10.19 41.22 3.86
660 671 2.891580 GACGCCAAGTAGGATATCTGGA 59.108 50.000 11.19 0.00 41.22 3.86
661 672 2.351835 CGACGCCAAGTAGGATATCTGG 60.352 54.545 2.05 3.18 41.22 3.86
662 673 2.351835 CCGACGCCAAGTAGGATATCTG 60.352 54.545 2.05 0.00 46.99 2.90
663 674 1.887198 CCGACGCCAAGTAGGATATCT 59.113 52.381 2.05 0.00 46.99 1.98
664 675 1.612463 ACCGACGCCAAGTAGGATATC 59.388 52.381 4.50 0.00 46.99 1.63
665 676 1.700955 ACCGACGCCAAGTAGGATAT 58.299 50.000 4.50 0.00 46.99 1.63
666 677 1.135527 CAACCGACGCCAAGTAGGATA 59.864 52.381 4.50 0.00 46.99 2.59
667 678 0.108329 CAACCGACGCCAAGTAGGAT 60.108 55.000 4.50 0.00 46.99 3.24
668 679 1.290955 CAACCGACGCCAAGTAGGA 59.709 57.895 4.50 0.00 46.99 2.94
670 681 1.897398 GCACAACCGACGCCAAGTAG 61.897 60.000 0.00 0.00 0.00 2.57
671 682 1.957186 GCACAACCGACGCCAAGTA 60.957 57.895 0.00 0.00 0.00 2.24
672 683 3.276846 GCACAACCGACGCCAAGT 61.277 61.111 0.00 0.00 0.00 3.16
673 684 2.954753 GAGCACAACCGACGCCAAG 61.955 63.158 0.00 0.00 0.00 3.61
674 685 2.970324 GAGCACAACCGACGCCAA 60.970 61.111 0.00 0.00 0.00 4.52
675 686 3.923864 AGAGCACAACCGACGCCA 61.924 61.111 0.00 0.00 0.00 5.69
676 687 3.414700 CAGAGCACAACCGACGCC 61.415 66.667 0.00 0.00 0.00 5.68
677 688 2.355837 TCAGAGCACAACCGACGC 60.356 61.111 0.00 0.00 0.00 5.19
678 689 0.109086 ATCTCAGAGCACAACCGACG 60.109 55.000 0.00 0.00 0.00 5.12
679 690 1.996191 GAATCTCAGAGCACAACCGAC 59.004 52.381 0.00 0.00 0.00 4.79
680 691 1.618343 TGAATCTCAGAGCACAACCGA 59.382 47.619 0.00 0.00 0.00 4.69
681 692 2.084610 TGAATCTCAGAGCACAACCG 57.915 50.000 0.00 0.00 0.00 4.44
682 693 3.126514 CACATGAATCTCAGAGCACAACC 59.873 47.826 0.00 0.00 0.00 3.77
683 694 3.999001 TCACATGAATCTCAGAGCACAAC 59.001 43.478 0.00 0.00 0.00 3.32
684 695 3.999001 GTCACATGAATCTCAGAGCACAA 59.001 43.478 0.00 0.00 0.00 3.33
685 696 3.593096 GTCACATGAATCTCAGAGCACA 58.407 45.455 0.00 0.00 0.00 4.57
686 697 2.602211 CGTCACATGAATCTCAGAGCAC 59.398 50.000 0.00 0.00 0.00 4.40
687 698 2.417787 CCGTCACATGAATCTCAGAGCA 60.418 50.000 0.00 0.00 0.00 4.26
688 699 2.200067 CCGTCACATGAATCTCAGAGC 58.800 52.381 0.00 0.00 0.00 4.09
689 700 2.200067 GCCGTCACATGAATCTCAGAG 58.800 52.381 0.00 0.00 0.00 3.35
690 701 1.550072 TGCCGTCACATGAATCTCAGA 59.450 47.619 0.00 0.00 0.00 3.27
691 702 1.931841 CTGCCGTCACATGAATCTCAG 59.068 52.381 0.00 0.00 0.00 3.35
692 703 2.008543 GCTGCCGTCACATGAATCTCA 61.009 52.381 0.00 0.00 0.00 3.27
693 704 0.654683 GCTGCCGTCACATGAATCTC 59.345 55.000 0.00 0.00 0.00 2.75
694 705 1.086067 CGCTGCCGTCACATGAATCT 61.086 55.000 0.00 0.00 0.00 2.40
695 706 1.083806 TCGCTGCCGTCACATGAATC 61.084 55.000 0.00 0.00 35.54 2.52
696 707 1.079197 TCGCTGCCGTCACATGAAT 60.079 52.632 0.00 0.00 35.54 2.57
697 708 1.737735 CTCGCTGCCGTCACATGAA 60.738 57.895 0.00 0.00 35.54 2.57
698 709 2.125952 CTCGCTGCCGTCACATGA 60.126 61.111 0.00 0.00 35.54 3.07
699 710 3.190849 CCTCGCTGCCGTCACATG 61.191 66.667 0.00 0.00 35.54 3.21
700 711 4.457496 CCCTCGCTGCCGTCACAT 62.457 66.667 0.00 0.00 35.54 3.21
707 718 4.838152 TCGAATGCCCTCGCTGCC 62.838 66.667 0.00 0.00 38.73 4.85
708 719 2.182842 AATCGAATGCCCTCGCTGC 61.183 57.895 0.00 0.00 38.73 5.25
709 720 1.645455 CAATCGAATGCCCTCGCTG 59.355 57.895 0.00 0.00 38.73 5.18
710 721 2.182842 GCAATCGAATGCCCTCGCT 61.183 57.895 14.69 0.00 40.49 4.93
711 722 2.329339 GCAATCGAATGCCCTCGC 59.671 61.111 14.69 0.00 40.49 5.03
712 723 2.628106 CGCAATCGAATGCCCTCG 59.372 61.111 19.37 1.81 43.47 4.63
713 724 2.182842 AGCGCAATCGAATGCCCTC 61.183 57.895 19.37 9.06 43.47 4.30
714 725 2.124570 AGCGCAATCGAATGCCCT 60.125 55.556 19.37 13.24 43.47 5.19
715 726 2.025156 CAGCGCAATCGAATGCCC 59.975 61.111 19.37 10.96 43.47 5.36
716 727 2.653130 GCAGCGCAATCGAATGCC 60.653 61.111 19.37 12.08 43.47 4.40
717 728 1.937846 CAGCAGCGCAATCGAATGC 60.938 57.895 15.60 15.60 44.74 3.56
718 729 0.588233 GTCAGCAGCGCAATCGAATG 60.588 55.000 11.47 0.00 38.10 2.67
719 730 1.717937 GTCAGCAGCGCAATCGAAT 59.282 52.632 11.47 0.00 38.10 3.34
720 731 2.729675 CGTCAGCAGCGCAATCGAA 61.730 57.895 11.47 0.00 38.10 3.71
721 732 3.181290 CGTCAGCAGCGCAATCGA 61.181 61.111 11.47 0.00 38.10 3.59
733 744 3.406361 GACGGTGTGCTGCGTCAG 61.406 66.667 0.00 2.92 32.27 3.51
734 745 4.961511 GGACGGTGTGCTGCGTCA 62.962 66.667 0.00 0.86 33.16 4.35
775 786 0.809385 GTGCTACGACTCTGGTGCTA 59.191 55.000 0.00 0.00 0.00 3.49
791 802 1.376609 CTTATCGCAACCCCAGGTGC 61.377 60.000 0.00 0.00 35.34 5.01
792 803 0.035439 ACTTATCGCAACCCCAGGTG 60.035 55.000 0.00 0.00 35.34 4.00
793 804 0.696501 AACTTATCGCAACCCCAGGT 59.303 50.000 0.00 0.00 37.65 4.00
794 805 1.379527 GAACTTATCGCAACCCCAGG 58.620 55.000 0.00 0.00 0.00 4.45
796 807 3.146783 CGAACTTATCGCAACCCCA 57.853 52.632 0.00 0.00 45.89 4.96
827 858 3.532542 GAACTCCTAATGAAACCCGGAG 58.467 50.000 0.73 0.00 45.22 4.63
829 860 2.277084 CGAACTCCTAATGAAACCCGG 58.723 52.381 0.00 0.00 0.00 5.73
831 862 2.014857 GCCGAACTCCTAATGAAACCC 58.985 52.381 0.00 0.00 0.00 4.11
832 863 2.937149 GAGCCGAACTCCTAATGAAACC 59.063 50.000 0.00 0.00 39.75 3.27
833 864 2.603560 CGAGCCGAACTCCTAATGAAAC 59.396 50.000 0.53 0.00 43.01 2.78
874 931 3.818961 TCTTTGACGGTCGTAGTACTG 57.181 47.619 5.39 0.00 0.00 2.74
875 932 3.365767 GCTTCTTTGACGGTCGTAGTACT 60.366 47.826 0.00 0.00 0.00 2.73
876 933 2.913590 GCTTCTTTGACGGTCGTAGTAC 59.086 50.000 3.34 0.00 0.00 2.73
877 934 2.553602 TGCTTCTTTGACGGTCGTAGTA 59.446 45.455 3.34 0.00 0.00 1.82
878 935 1.338973 TGCTTCTTTGACGGTCGTAGT 59.661 47.619 3.34 0.00 0.00 2.73
879 936 2.060326 TGCTTCTTTGACGGTCGTAG 57.940 50.000 3.34 3.52 0.00 3.51
880 937 2.512485 TTGCTTCTTTGACGGTCGTA 57.488 45.000 3.34 0.00 0.00 3.43
881 938 1.658994 TTTGCTTCTTTGACGGTCGT 58.341 45.000 3.34 0.00 0.00 4.34
882 939 2.748461 TTTTGCTTCTTTGACGGTCG 57.252 45.000 3.34 0.00 0.00 4.79
883 940 3.765026 TGTTTTTGCTTCTTTGACGGTC 58.235 40.909 0.00 0.00 0.00 4.79
884 941 3.428862 CCTGTTTTTGCTTCTTTGACGGT 60.429 43.478 0.00 0.00 0.00 4.83
885 942 3.115554 CCTGTTTTTGCTTCTTTGACGG 58.884 45.455 0.00 0.00 0.00 4.79
886 943 3.791353 GTCCTGTTTTTGCTTCTTTGACG 59.209 43.478 0.00 0.00 0.00 4.35
887 944 4.998788 AGTCCTGTTTTTGCTTCTTTGAC 58.001 39.130 0.00 0.00 0.00 3.18
888 945 5.221048 GCTAGTCCTGTTTTTGCTTCTTTGA 60.221 40.000 0.00 0.00 0.00 2.69
889 946 4.978580 GCTAGTCCTGTTTTTGCTTCTTTG 59.021 41.667 0.00 0.00 0.00 2.77
890 947 4.889995 AGCTAGTCCTGTTTTTGCTTCTTT 59.110 37.500 0.00 0.00 0.00 2.52
891 948 4.464947 AGCTAGTCCTGTTTTTGCTTCTT 58.535 39.130 0.00 0.00 0.00 2.52
892 949 4.092116 AGCTAGTCCTGTTTTTGCTTCT 57.908 40.909 0.00 0.00 0.00 2.85
893 950 4.837896 AAGCTAGTCCTGTTTTTGCTTC 57.162 40.909 0.00 0.00 34.74 3.86
894 951 4.762251 CCTAAGCTAGTCCTGTTTTTGCTT 59.238 41.667 0.00 0.00 41.32 3.91
895 952 4.202472 ACCTAAGCTAGTCCTGTTTTTGCT 60.202 41.667 0.00 0.00 0.00 3.91
896 953 4.072839 ACCTAAGCTAGTCCTGTTTTTGC 58.927 43.478 0.00 0.00 0.00 3.68
897 954 5.107065 CGAACCTAAGCTAGTCCTGTTTTTG 60.107 44.000 0.00 0.00 0.00 2.44
898 955 4.995487 CGAACCTAAGCTAGTCCTGTTTTT 59.005 41.667 0.00 0.00 0.00 1.94
899 956 4.566987 CGAACCTAAGCTAGTCCTGTTTT 58.433 43.478 0.00 0.00 0.00 2.43
900 957 3.616802 GCGAACCTAAGCTAGTCCTGTTT 60.617 47.826 0.00 0.00 0.00 2.83
901 958 2.094130 GCGAACCTAAGCTAGTCCTGTT 60.094 50.000 0.00 0.00 0.00 3.16
902 959 1.477295 GCGAACCTAAGCTAGTCCTGT 59.523 52.381 0.00 0.00 0.00 4.00
964 1021 4.019771 TCAATATATATGGCCTGGACGCAA 60.020 41.667 3.32 0.00 0.00 4.85
965 1022 3.517500 TCAATATATATGGCCTGGACGCA 59.482 43.478 3.32 0.00 0.00 5.24
1047 1107 2.816672 CTCTAGTATCGCCATGCAGAGA 59.183 50.000 0.00 0.00 31.72 3.10
1048 1108 2.670789 GCTCTAGTATCGCCATGCAGAG 60.671 54.545 0.00 0.00 0.00 3.35
1069 1129 1.687840 TAGGGACGTGGATGGTGGG 60.688 63.158 0.00 0.00 0.00 4.61
1089 1149 3.753434 CTCCCGTCGAGCAGCAGT 61.753 66.667 0.00 0.00 0.00 4.40
1348 1423 2.398498 CAACTCACGACACTCTTCCAG 58.602 52.381 0.00 0.00 0.00 3.86
1453 1531 1.068417 TCTCCACGTTGTTGTCGGG 59.932 57.895 0.00 0.00 0.00 5.14
1505 1583 2.224159 TGGCGCCCCTTCTTCTTCT 61.224 57.895 26.77 0.00 0.00 2.85
1576 1654 2.959030 TCACCTGCTCGATTATGTAGCT 59.041 45.455 0.00 0.00 37.16 3.32
1834 1913 0.616371 CTCATCCCCCGTACCAACAA 59.384 55.000 0.00 0.00 0.00 2.83
1835 1914 1.268992 CCTCATCCCCCGTACCAACA 61.269 60.000 0.00 0.00 0.00 3.33
1932 2012 1.519455 GGCCTCCAAGATCGACACG 60.519 63.158 0.00 0.00 0.00 4.49
1962 2042 1.569493 CGCGCCTTCCCATTTATCG 59.431 57.895 0.00 0.00 0.00 2.92
2148 2229 5.783111 ACAAATTGCTAAAACAGACCATCC 58.217 37.500 0.00 0.00 0.00 3.51
2175 2256 7.661437 TGACAAATTTGCAGTAAGATGTAGACT 59.339 33.333 18.12 0.00 0.00 3.24
2176 2257 7.806690 TGACAAATTTGCAGTAAGATGTAGAC 58.193 34.615 18.12 0.00 0.00 2.59
2177 2258 7.977789 TGACAAATTTGCAGTAAGATGTAGA 57.022 32.000 18.12 0.00 0.00 2.59
2179 2260 8.109705 ACATGACAAATTTGCAGTAAGATGTA 57.890 30.769 18.12 0.00 0.00 2.29
2180 2261 6.985117 ACATGACAAATTTGCAGTAAGATGT 58.015 32.000 18.12 12.68 0.00 3.06
2183 2264 9.979578 AATTTACATGACAAATTTGCAGTAAGA 57.020 25.926 18.12 14.27 32.94 2.10
2185 2266 9.539825 ACAATTTACATGACAAATTTGCAGTAA 57.460 25.926 18.12 18.70 34.22 2.24
2242 2483 9.016438 GGAAACCACTTCTTTATACAATACCAA 57.984 33.333 0.00 0.00 34.17 3.67
2299 2578 4.876107 ACGACTCAGAGAAACACAACATTT 59.124 37.500 3.79 0.00 0.00 2.32
2364 2643 7.735321 ACACCTCTGTTTATAGCTTATATCCCT 59.265 37.037 0.00 0.00 0.00 4.20
2411 2734 6.466326 CCCCAGGATGATAATGCTTCTTTCTA 60.466 42.308 0.00 0.00 39.69 2.10
2436 2759 4.333372 TGACCGCCGGTTTATCTTATTTTC 59.667 41.667 11.54 0.00 35.25 2.29
2470 2794 8.439971 TCCACTATTGGCAATACTATGAAATCT 58.560 33.333 15.73 0.00 43.56 2.40
2487 2811 2.868044 GCTATGCCTCGGTCCACTATTG 60.868 54.545 0.00 0.00 0.00 1.90
2490 2814 1.113517 GGCTATGCCTCGGTCCACTA 61.114 60.000 0.73 0.00 46.69 2.74
2557 2881 1.687612 CCTGTTGGAGCATGGAGGT 59.312 57.895 0.00 0.00 34.57 3.85
2617 2990 9.787532 CCAGTTTGATGTAGTAATATTTTGGTG 57.212 33.333 0.00 0.00 0.00 4.17
2680 3053 3.763057 TGCCTAGATCTATTCGGCAGTA 58.237 45.455 23.53 7.68 45.08 2.74
2766 3139 6.309251 GTCAGCTTGCTTAACTTGTAGTAGAG 59.691 42.308 0.00 0.00 0.00 2.43
2884 3306 3.136763 AGCTGGATTTGTCATCTATGCG 58.863 45.455 0.00 0.00 0.00 4.73
2948 3370 9.696917 GAAATGATCTGGTTTGAAATGTTTACT 57.303 29.630 0.00 0.00 0.00 2.24
2954 3376 6.457355 TGGTGAAATGATCTGGTTTGAAATG 58.543 36.000 0.00 0.00 0.00 2.32
2999 3421 8.349983 ACACGCAGTTCTTTTCTTGTTATTATT 58.650 29.630 0.00 0.00 41.61 1.40
3000 3422 7.871853 ACACGCAGTTCTTTTCTTGTTATTAT 58.128 30.769 0.00 0.00 41.61 1.28
3001 3423 7.225931 AGACACGCAGTTCTTTTCTTGTTATTA 59.774 33.333 0.00 0.00 41.61 0.98
3002 3424 6.038271 AGACACGCAGTTCTTTTCTTGTTATT 59.962 34.615 0.00 0.00 41.61 1.40
3003 3425 5.527582 AGACACGCAGTTCTTTTCTTGTTAT 59.472 36.000 0.00 0.00 41.61 1.89
3004 3426 4.873827 AGACACGCAGTTCTTTTCTTGTTA 59.126 37.500 0.00 0.00 41.61 2.41
3005 3427 3.689649 AGACACGCAGTTCTTTTCTTGTT 59.310 39.130 0.00 0.00 41.61 2.83
3006 3428 3.270877 AGACACGCAGTTCTTTTCTTGT 58.729 40.909 0.00 0.00 41.61 3.16
3007 3429 3.557595 AGAGACACGCAGTTCTTTTCTTG 59.442 43.478 0.00 0.00 41.61 3.02
3008 3430 3.557595 CAGAGACACGCAGTTCTTTTCTT 59.442 43.478 0.00 0.00 41.61 2.52
3009 3431 3.126831 CAGAGACACGCAGTTCTTTTCT 58.873 45.455 0.00 0.00 41.61 2.52
3010 3432 2.221981 CCAGAGACACGCAGTTCTTTTC 59.778 50.000 0.00 0.00 41.61 2.29
3011 3433 2.158957 TCCAGAGACACGCAGTTCTTTT 60.159 45.455 0.00 0.00 41.61 2.27
3012 3434 1.412710 TCCAGAGACACGCAGTTCTTT 59.587 47.619 0.00 0.00 41.61 2.52
3013 3435 1.040646 TCCAGAGACACGCAGTTCTT 58.959 50.000 0.00 0.00 41.61 2.52
3014 3436 1.067283 CATCCAGAGACACGCAGTTCT 60.067 52.381 0.00 0.00 41.61 3.01
3015 3437 1.067565 TCATCCAGAGACACGCAGTTC 60.068 52.381 0.00 0.00 41.61 3.01
3016 3438 0.969149 TCATCCAGAGACACGCAGTT 59.031 50.000 0.00 0.00 41.61 3.16
3030 3452 0.543749 CCTCAACCCTGGACTCATCC 59.456 60.000 0.00 0.00 46.48 3.51
3031 3453 1.573108 TCCTCAACCCTGGACTCATC 58.427 55.000 0.00 0.00 0.00 2.92
3032 3454 1.842562 CATCCTCAACCCTGGACTCAT 59.157 52.381 0.00 0.00 34.90 2.90
3033 3455 1.279496 CATCCTCAACCCTGGACTCA 58.721 55.000 0.00 0.00 34.90 3.41
3034 3456 1.280457 ACATCCTCAACCCTGGACTC 58.720 55.000 0.00 0.00 34.90 3.36
3035 3457 1.630878 GAACATCCTCAACCCTGGACT 59.369 52.381 0.00 0.00 34.90 3.85
3036 3458 1.340114 GGAACATCCTCAACCCTGGAC 60.340 57.143 0.00 0.00 34.90 4.02
3037 3459 0.991920 GGAACATCCTCAACCCTGGA 59.008 55.000 0.00 0.00 36.72 3.86
3038 3460 0.995024 AGGAACATCCTCAACCCTGG 59.005 55.000 0.00 0.00 45.66 4.45
3047 3469 4.318159 GCTGTGAGCTGAGGAACATCCT 62.318 54.545 0.00 0.00 43.84 3.24
3048 3470 2.011046 GCTGTGAGCTGAGGAACATCC 61.011 57.143 0.00 0.00 38.45 3.51
3049 3471 1.367659 GCTGTGAGCTGAGGAACATC 58.632 55.000 0.00 0.00 38.45 3.06
3050 3472 0.390866 CGCTGTGAGCTGAGGAACAT 60.391 55.000 0.00 0.00 39.60 2.71
3051 3473 1.005748 CGCTGTGAGCTGAGGAACA 60.006 57.895 0.00 0.00 39.60 3.18
3052 3474 1.739562 CCGCTGTGAGCTGAGGAAC 60.740 63.158 0.00 0.00 39.60 3.62
3053 3475 2.210013 ACCGCTGTGAGCTGAGGAA 61.210 57.895 0.00 0.00 39.60 3.36
3054 3476 2.601666 ACCGCTGTGAGCTGAGGA 60.602 61.111 0.00 0.00 39.60 3.71
3055 3477 2.433838 CACCGCTGTGAGCTGAGG 60.434 66.667 1.41 0.00 45.76 3.86
3056 3478 2.433838 CCACCGCTGTGAGCTGAG 60.434 66.667 10.15 0.00 45.76 3.35
3057 3479 2.917227 TCCACCGCTGTGAGCTGA 60.917 61.111 10.15 0.00 45.76 4.26
3058 3480 2.433838 CTCCACCGCTGTGAGCTG 60.434 66.667 10.15 0.00 45.76 4.24
3059 3481 1.548357 ATTCTCCACCGCTGTGAGCT 61.548 55.000 10.15 0.00 45.76 4.09
3060 3482 1.078848 ATTCTCCACCGCTGTGAGC 60.079 57.895 10.15 0.00 45.76 4.26
3061 3483 0.247460 TCATTCTCCACCGCTGTGAG 59.753 55.000 10.15 5.73 45.76 3.51
3062 3484 0.904649 ATCATTCTCCACCGCTGTGA 59.095 50.000 10.15 0.00 45.76 3.58
3063 3485 2.602257 TATCATTCTCCACCGCTGTG 57.398 50.000 0.56 0.56 42.39 3.66
3064 3486 3.389329 AGAATATCATTCTCCACCGCTGT 59.611 43.478 0.00 0.00 0.00 4.40
3065 3487 4.000331 AGAATATCATTCTCCACCGCTG 58.000 45.455 0.00 0.00 0.00 5.18
3066 3488 4.696479 AAGAATATCATTCTCCACCGCT 57.304 40.909 2.06 0.00 0.00 5.52
3067 3489 4.386049 CGTAAGAATATCATTCTCCACCGC 59.614 45.833 2.06 0.00 43.02 5.68
3068 3490 4.923871 CCGTAAGAATATCATTCTCCACCG 59.076 45.833 2.06 3.32 43.02 4.94
3069 3491 4.691216 GCCGTAAGAATATCATTCTCCACC 59.309 45.833 2.06 0.00 43.02 4.61
3070 3492 5.542779 AGCCGTAAGAATATCATTCTCCAC 58.457 41.667 2.06 3.59 43.02 4.02
3071 3493 5.279506 GGAGCCGTAAGAATATCATTCTCCA 60.280 44.000 2.06 0.00 43.02 3.86
3072 3494 5.046950 AGGAGCCGTAAGAATATCATTCTCC 60.047 44.000 2.06 0.00 43.02 3.71
3073 3495 6.031751 AGGAGCCGTAAGAATATCATTCTC 57.968 41.667 2.06 0.00 43.02 2.87
3074 3496 6.426646 AAGGAGCCGTAAGAATATCATTCT 57.573 37.500 0.00 0.00 43.02 2.40
3075 3497 6.931840 AGAAAGGAGCCGTAAGAATATCATTC 59.068 38.462 0.00 0.00 43.02 2.67
3076 3498 6.831976 AGAAAGGAGCCGTAAGAATATCATT 58.168 36.000 0.00 0.00 43.02 2.57
3077 3499 6.426646 AGAAAGGAGCCGTAAGAATATCAT 57.573 37.500 0.00 0.00 43.02 2.45
3078 3500 5.221461 GGAGAAAGGAGCCGTAAGAATATCA 60.221 44.000 0.00 0.00 43.02 2.15
3079 3501 5.231702 GGAGAAAGGAGCCGTAAGAATATC 58.768 45.833 0.00 0.00 43.02 1.63
3080 3502 4.262079 CGGAGAAAGGAGCCGTAAGAATAT 60.262 45.833 0.00 0.00 40.17 1.28
3081 3503 3.067742 CGGAGAAAGGAGCCGTAAGAATA 59.932 47.826 0.00 0.00 40.17 1.75
3082 3504 2.159085 CGGAGAAAGGAGCCGTAAGAAT 60.159 50.000 0.00 0.00 40.17 2.40
3083 3505 1.203994 CGGAGAAAGGAGCCGTAAGAA 59.796 52.381 0.00 0.00 40.17 2.52
3084 3506 0.815734 CGGAGAAAGGAGCCGTAAGA 59.184 55.000 0.00 0.00 40.17 2.10
3085 3507 0.815734 TCGGAGAAAGGAGCCGTAAG 59.184 55.000 0.00 0.00 45.02 2.34
3086 3508 0.815734 CTCGGAGAAAGGAGCCGTAA 59.184 55.000 0.00 0.00 45.02 3.18
3087 3509 0.034767 TCTCGGAGAAAGGAGCCGTA 60.035 55.000 4.96 0.00 45.02 4.02
3088 3510 0.898789 TTCTCGGAGAAAGGAGCCGT 60.899 55.000 17.70 0.00 45.02 5.68
3089 3511 0.246635 TTTCTCGGAGAAAGGAGCCG 59.753 55.000 25.19 0.00 39.13 5.52
3096 3518 3.006967 CCAGAACCTCTTTCTCGGAGAAA 59.993 47.826 26.61 26.61 43.23 2.52
3097 3519 2.563179 CCAGAACCTCTTTCTCGGAGAA 59.437 50.000 16.19 16.19 43.23 2.87
3098 3520 2.171840 CCAGAACCTCTTTCTCGGAGA 58.828 52.381 2.97 2.97 43.23 3.71
3099 3521 2.165437 CTCCAGAACCTCTTTCTCGGAG 59.835 54.545 13.41 13.41 43.23 4.63
3100 3522 2.171840 CTCCAGAACCTCTTTCTCGGA 58.828 52.381 0.00 0.00 43.23 4.55
3101 3523 1.205893 CCTCCAGAACCTCTTTCTCGG 59.794 57.143 0.00 0.00 43.23 4.63
3102 3524 1.404851 GCCTCCAGAACCTCTTTCTCG 60.405 57.143 0.00 0.00 43.23 4.04
3103 3525 1.065782 GGCCTCCAGAACCTCTTTCTC 60.066 57.143 0.00 0.00 43.23 2.87
3104 3526 0.988063 GGCCTCCAGAACCTCTTTCT 59.012 55.000 0.00 0.00 46.29 2.52
3105 3527 0.693049 TGGCCTCCAGAACCTCTTTC 59.307 55.000 3.32 0.00 33.95 2.62
3106 3528 1.376649 ATGGCCTCCAGAACCTCTTT 58.623 50.000 3.32 0.00 36.75 2.52
3107 3529 1.376649 AATGGCCTCCAGAACCTCTT 58.623 50.000 3.32 0.00 36.75 2.85
3108 3530 1.283321 GAAATGGCCTCCAGAACCTCT 59.717 52.381 3.32 0.00 36.75 3.69
3109 3531 1.756430 GAAATGGCCTCCAGAACCTC 58.244 55.000 3.32 0.00 36.75 3.85
3110 3532 0.035056 CGAAATGGCCTCCAGAACCT 60.035 55.000 3.32 0.00 36.75 3.50
3111 3533 1.657751 GCGAAATGGCCTCCAGAACC 61.658 60.000 3.32 0.00 36.75 3.62
3112 3534 0.960364 TGCGAAATGGCCTCCAGAAC 60.960 55.000 3.32 0.00 36.75 3.01
3113 3535 0.251121 TTGCGAAATGGCCTCCAGAA 60.251 50.000 3.32 0.00 36.75 3.02
3114 3536 0.251121 TTTGCGAAATGGCCTCCAGA 60.251 50.000 3.32 0.00 36.75 3.86
3115 3537 0.819582 ATTTGCGAAATGGCCTCCAG 59.180 50.000 3.32 0.00 36.75 3.86
3116 3538 0.531657 CATTTGCGAAATGGCCTCCA 59.468 50.000 3.32 0.00 43.50 3.86
3117 3539 0.817013 TCATTTGCGAAATGGCCTCC 59.183 50.000 3.32 0.00 46.40 4.30
3118 3540 2.652941 TTCATTTGCGAAATGGCCTC 57.347 45.000 3.32 0.00 46.40 4.70
3119 3541 3.399440 TTTTCATTTGCGAAATGGCCT 57.601 38.095 3.32 0.00 46.40 5.19
3120 3542 4.683501 ATTTTTCATTTGCGAAATGGCC 57.316 36.364 16.44 0.00 46.40 5.36
3121 3543 6.597614 TGTTATTTTTCATTTGCGAAATGGC 58.402 32.000 16.44 0.00 46.40 4.40
3122 3544 7.745594 CCTTGTTATTTTTCATTTGCGAAATGG 59.254 33.333 16.44 0.91 46.40 3.16
3124 3546 7.297391 GCCTTGTTATTTTTCATTTGCGAAAT 58.703 30.769 0.00 0.00 34.94 2.17
3125 3547 6.563010 CGCCTTGTTATTTTTCATTTGCGAAA 60.563 34.615 0.00 0.00 39.46 3.46
3126 3548 5.107683 CGCCTTGTTATTTTTCATTTGCGAA 60.108 36.000 0.00 0.00 39.46 4.70
3127 3549 4.384247 CGCCTTGTTATTTTTCATTTGCGA 59.616 37.500 0.00 0.00 39.46 5.10
3128 3550 4.627098 CGCCTTGTTATTTTTCATTTGCG 58.373 39.130 0.00 0.00 0.00 4.85
3129 3551 4.393934 GCGCCTTGTTATTTTTCATTTGC 58.606 39.130 0.00 0.00 0.00 3.68
3130 3552 4.434067 CGGCGCCTTGTTATTTTTCATTTG 60.434 41.667 26.68 0.00 0.00 2.32
3131 3553 3.677596 CGGCGCCTTGTTATTTTTCATTT 59.322 39.130 26.68 0.00 0.00 2.32
3132 3554 3.249917 CGGCGCCTTGTTATTTTTCATT 58.750 40.909 26.68 0.00 0.00 2.57
3133 3555 2.416701 CCGGCGCCTTGTTATTTTTCAT 60.417 45.455 26.68 0.00 0.00 2.57
3134 3556 1.068194 CCGGCGCCTTGTTATTTTTCA 60.068 47.619 26.68 0.00 0.00 2.69
3135 3557 1.624487 CCGGCGCCTTGTTATTTTTC 58.376 50.000 26.68 0.00 0.00 2.29
3136 3558 0.245266 CCCGGCGCCTTGTTATTTTT 59.755 50.000 26.68 0.00 0.00 1.94
3137 3559 1.887301 CCCGGCGCCTTGTTATTTT 59.113 52.632 26.68 0.00 0.00 1.82
3138 3560 2.706834 GCCCGGCGCCTTGTTATTT 61.707 57.895 26.68 0.00 0.00 1.40
3139 3561 3.138128 GCCCGGCGCCTTGTTATT 61.138 61.111 26.68 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.