Multiple sequence alignment - TraesCS3B01G409200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G409200 chr3B 100.000 2876 0 0 1 2876 644838415 644841290 0.000000e+00 5312.0
1 TraesCS3B01G409200 chr3B 98.444 707 10 1 1 706 776512516 776511810 0.000000e+00 1243.0
2 TraesCS3B01G409200 chr3B 84.544 647 57 23 2242 2876 800017062 800016447 4.100000e-168 601.0
3 TraesCS3B01G409200 chr4B 99.006 704 7 0 1 704 621707520 621706817 0.000000e+00 1262.0
4 TraesCS3B01G409200 chr2B 98.729 708 6 3 1 706 461248661 461249367 0.000000e+00 1254.0
5 TraesCS3B01G409200 chr2B 98.442 706 10 1 1 705 325907298 325906593 0.000000e+00 1242.0
6 TraesCS3B01G409200 chr2B 81.414 382 38 22 2242 2612 161207208 161207567 6.070000e-72 281.0
7 TraesCS3B01G409200 chr2B 78.516 256 35 17 2241 2481 134235702 134235952 1.790000e-32 150.0
8 TraesCS3B01G409200 chr3A 98.584 706 10 0 1 706 44737767 44738472 0.000000e+00 1249.0
9 TraesCS3B01G409200 chr3A 97.103 725 15 6 1 723 530172500 530173220 0.000000e+00 1218.0
10 TraesCS3B01G409200 chr3A 95.318 598 25 1 1369 1963 625405646 625406243 0.000000e+00 946.0
11 TraesCS3B01G409200 chr3A 89.495 495 26 15 705 1176 625405163 625405654 1.140000e-168 603.0
12 TraesCS3B01G409200 chr3A 91.519 283 23 1 1962 2243 734417104 734416822 3.480000e-104 388.0
13 TraesCS3B01G409200 chr3A 97.423 194 5 0 1176 1369 746586318 746586125 5.940000e-87 331.0
14 TraesCS3B01G409200 chr3A 93.458 107 7 0 706 812 625394692 625394798 2.970000e-35 159.0
15 TraesCS3B01G409200 chr7A 98.444 707 11 0 1 707 704319295 704320001 0.000000e+00 1245.0
16 TraesCS3B01G409200 chr7A 84.848 627 61 16 2237 2847 733084917 733084309 4.100000e-168 601.0
17 TraesCS3B01G409200 chr7A 88.312 77 9 0 1372 1448 48442848 48442924 3.050000e-15 93.5
18 TraesCS3B01G409200 chr5B 98.446 708 9 2 1 706 581717401 581718108 0.000000e+00 1245.0
19 TraesCS3B01G409200 chr5B 96.923 195 6 0 1176 1370 8541645 8541839 7.680000e-86 327.0
20 TraesCS3B01G409200 chr5B 95.545 202 8 1 1168 1368 699615895 699616096 3.570000e-84 322.0
21 TraesCS3B01G409200 chr5B 85.876 177 22 3 1000 1176 602138083 602138256 4.890000e-43 185.0
22 TraesCS3B01G409200 chr5B 76.667 240 33 18 2242 2470 670573069 670573296 8.420000e-21 111.0
23 TraesCS3B01G409200 chr2A 98.310 710 10 2 1 708 238721729 238721020 0.000000e+00 1243.0
24 TraesCS3B01G409200 chr2A 96.806 720 20 2 1 719 139862518 139861801 0.000000e+00 1199.0
25 TraesCS3B01G409200 chr2A 85.780 218 26 5 1962 2176 39708056 39707841 2.880000e-55 226.0
26 TraesCS3B01G409200 chr6B 97.503 721 16 2 1 719 279092249 279091529 0.000000e+00 1230.0
27 TraesCS3B01G409200 chr6B 96.923 195 6 0 1176 1370 61066042 61066236 7.680000e-86 327.0
28 TraesCS3B01G409200 chr1A 97.083 720 18 3 1 719 329577352 329576635 0.000000e+00 1210.0
29 TraesCS3B01G409200 chr1A 97.938 194 4 0 1175 1368 44329172 44328979 1.280000e-88 337.0
30 TraesCS3B01G409200 chr1A 90.583 223 21 0 1964 2186 568517796 568517574 2.170000e-76 296.0
31 TraesCS3B01G409200 chr1A 85.463 227 29 4 1953 2176 217590871 217590646 1.720000e-57 233.0
32 TraesCS3B01G409200 chr3D 93.791 612 22 9 1369 1964 482501512 482502123 0.000000e+00 905.0
33 TraesCS3B01G409200 chr3D 88.710 496 35 15 702 1176 482501025 482501520 1.150000e-163 586.0
34 TraesCS3B01G409200 chr2D 88.346 635 46 17 2262 2873 359664549 359665178 0.000000e+00 737.0
35 TraesCS3B01G409200 chr6A 87.443 653 55 16 2242 2873 590046088 590046734 0.000000e+00 726.0
36 TraesCS3B01G409200 chr1B 91.651 527 29 8 2356 2876 620658525 620658008 0.000000e+00 715.0
37 TraesCS3B01G409200 chr1B 91.901 284 22 1 1961 2243 666360338 666360621 2.080000e-106 396.0
38 TraesCS3B01G409200 chr1B 97.938 194 4 0 1175 1368 24121839 24121646 1.280000e-88 337.0
39 TraesCS3B01G409200 chr5A 86.790 651 61 14 2242 2873 496993661 496994305 0.000000e+00 702.0
40 TraesCS3B01G409200 chr5A 93.617 282 17 1 1963 2243 344493981 344493700 1.230000e-113 420.0
41 TraesCS3B01G409200 chr5A 96.447 197 7 0 1176 1372 541477918 541477722 2.760000e-85 326.0
42 TraesCS3B01G409200 chr5A 84.270 178 23 5 1000 1176 609812987 609813160 4.930000e-38 169.0
43 TraesCS3B01G409200 chr5A 82.803 157 27 0 1370 1526 572992881 572993037 1.070000e-29 141.0
44 TraesCS3B01G409200 chrUn 86.462 650 65 13 2241 2873 29908022 29908665 0.000000e+00 691.0
45 TraesCS3B01G409200 chrUn 86.202 645 61 18 2242 2866 22438988 22439624 0.000000e+00 673.0
46 TraesCS3B01G409200 chrUn 97.423 194 5 0 1176 1369 12282128 12282321 5.940000e-87 331.0
47 TraesCS3B01G409200 chr6D 86.239 654 53 18 2242 2876 422940769 422940134 0.000000e+00 675.0
48 TraesCS3B01G409200 chr6D 86.133 649 62 16 2242 2873 468245579 468246216 0.000000e+00 675.0
49 TraesCS3B01G409200 chr1D 85.692 643 67 14 2242 2873 457789425 457788797 0.000000e+00 654.0
50 TraesCS3B01G409200 chr1D 97.143 35 1 0 1957 1991 46739830 46739796 3.090000e-05 60.2
51 TraesCS3B01G409200 chr4A 89.680 281 27 2 1964 2243 133839469 133839190 9.800000e-95 357.0
52 TraesCS3B01G409200 chr4A 86.957 184 21 3 1961 2142 646566593 646566411 1.350000e-48 204.0
53 TraesCS3B01G409200 chr7B 97.409 193 5 0 1175 1367 696615436 696615628 2.140000e-86 329.0
54 TraesCS3B01G409200 chr7B 78.462 260 35 14 2240 2483 433940696 433940442 1.790000e-32 150.0
55 TraesCS3B01G409200 chr5D 83.616 177 26 3 1000 1176 488837808 488837981 2.290000e-36 163.0
56 TraesCS3B01G409200 chr5D 82.558 172 27 3 1000 1171 488783699 488783867 6.420000e-32 148.0
57 TraesCS3B01G409200 chr5D 84.884 86 9 3 1962 2045 116024671 116024588 1.840000e-12 84.2
58 TraesCS3B01G409200 chr7D 82.407 108 12 6 1960 2063 305127244 305127140 1.420000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G409200 chr3B 644838415 644841290 2875 False 5312.0 5312 100.0000 1 2876 1 chr3B.!!$F1 2875
1 TraesCS3B01G409200 chr3B 776511810 776512516 706 True 1243.0 1243 98.4440 1 706 1 chr3B.!!$R1 705
2 TraesCS3B01G409200 chr3B 800016447 800017062 615 True 601.0 601 84.5440 2242 2876 1 chr3B.!!$R2 634
3 TraesCS3B01G409200 chr4B 621706817 621707520 703 True 1262.0 1262 99.0060 1 704 1 chr4B.!!$R1 703
4 TraesCS3B01G409200 chr2B 461248661 461249367 706 False 1254.0 1254 98.7290 1 706 1 chr2B.!!$F3 705
5 TraesCS3B01G409200 chr2B 325906593 325907298 705 True 1242.0 1242 98.4420 1 705 1 chr2B.!!$R1 704
6 TraesCS3B01G409200 chr3A 44737767 44738472 705 False 1249.0 1249 98.5840 1 706 1 chr3A.!!$F1 705
7 TraesCS3B01G409200 chr3A 530172500 530173220 720 False 1218.0 1218 97.1030 1 723 1 chr3A.!!$F2 722
8 TraesCS3B01G409200 chr3A 625405163 625406243 1080 False 774.5 946 92.4065 705 1963 2 chr3A.!!$F4 1258
9 TraesCS3B01G409200 chr7A 704319295 704320001 706 False 1245.0 1245 98.4440 1 707 1 chr7A.!!$F2 706
10 TraesCS3B01G409200 chr7A 733084309 733084917 608 True 601.0 601 84.8480 2237 2847 1 chr7A.!!$R1 610
11 TraesCS3B01G409200 chr5B 581717401 581718108 707 False 1245.0 1245 98.4460 1 706 1 chr5B.!!$F2 705
12 TraesCS3B01G409200 chr2A 238721020 238721729 709 True 1243.0 1243 98.3100 1 708 1 chr2A.!!$R3 707
13 TraesCS3B01G409200 chr2A 139861801 139862518 717 True 1199.0 1199 96.8060 1 719 1 chr2A.!!$R2 718
14 TraesCS3B01G409200 chr6B 279091529 279092249 720 True 1230.0 1230 97.5030 1 719 1 chr6B.!!$R1 718
15 TraesCS3B01G409200 chr1A 329576635 329577352 717 True 1210.0 1210 97.0830 1 719 1 chr1A.!!$R3 718
16 TraesCS3B01G409200 chr3D 482501025 482502123 1098 False 745.5 905 91.2505 702 1964 2 chr3D.!!$F1 1262
17 TraesCS3B01G409200 chr2D 359664549 359665178 629 False 737.0 737 88.3460 2262 2873 1 chr2D.!!$F1 611
18 TraesCS3B01G409200 chr6A 590046088 590046734 646 False 726.0 726 87.4430 2242 2873 1 chr6A.!!$F1 631
19 TraesCS3B01G409200 chr1B 620658008 620658525 517 True 715.0 715 91.6510 2356 2876 1 chr1B.!!$R2 520
20 TraesCS3B01G409200 chr5A 496993661 496994305 644 False 702.0 702 86.7900 2242 2873 1 chr5A.!!$F1 631
21 TraesCS3B01G409200 chrUn 29908022 29908665 643 False 691.0 691 86.4620 2241 2873 1 chrUn.!!$F3 632
22 TraesCS3B01G409200 chrUn 22438988 22439624 636 False 673.0 673 86.2020 2242 2866 1 chrUn.!!$F2 624
23 TraesCS3B01G409200 chr6D 422940134 422940769 635 True 675.0 675 86.2390 2242 2876 1 chr6D.!!$R1 634
24 TraesCS3B01G409200 chr6D 468245579 468246216 637 False 675.0 675 86.1330 2242 2873 1 chr6D.!!$F1 631
25 TraesCS3B01G409200 chr1D 457788797 457789425 628 True 654.0 654 85.6920 2242 2873 1 chr1D.!!$R2 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1015 0.831966 AGAGCTCCTGCATCTCCAAG 59.168 55.0 10.93 0.0 42.74 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2147 0.105964 TTTGGTTAGTTGGGCTGCCA 60.106 50.0 22.05 3.69 33.76 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 4.848357 CCCATCCTAGAGAACATTGTGTT 58.152 43.478 0.00 0.00 44.37 3.32
633 636 5.895534 GCACCCCATAATCATCCAATATGAT 59.104 40.000 0.00 0.00 40.20 2.45
639 642 8.450434 CCCATAATCATCCAATATGATGGGATA 58.550 37.037 15.53 1.18 43.53 2.59
731 735 4.556233 TCATTGGATCGGAATATCGTGAC 58.444 43.478 0.00 0.00 0.00 3.67
757 761 1.421410 GGCACGAGTTCCGCTACATG 61.421 60.000 0.00 0.00 43.32 3.21
812 816 8.540492 CACATAAACTATTCTTGACGTGATACC 58.460 37.037 0.00 0.00 0.00 2.73
813 817 7.709613 ACATAAACTATTCTTGACGTGATACCC 59.290 37.037 0.00 0.00 0.00 3.69
814 818 5.670792 AACTATTCTTGACGTGATACCCA 57.329 39.130 0.00 0.00 0.00 4.51
815 819 5.007385 ACTATTCTTGACGTGATACCCAC 57.993 43.478 0.00 0.00 42.30 4.61
816 820 4.710375 ACTATTCTTGACGTGATACCCACT 59.290 41.667 0.00 0.00 43.53 4.00
817 821 4.553330 ATTCTTGACGTGATACCCACTT 57.447 40.909 0.00 0.00 43.53 3.16
818 822 5.670792 ATTCTTGACGTGATACCCACTTA 57.329 39.130 0.00 0.00 43.53 2.24
819 823 4.445452 TCTTGACGTGATACCCACTTAC 57.555 45.455 0.00 0.00 43.53 2.34
837 841 2.363306 ACCCAGTCAGCATCAAACAA 57.637 45.000 0.00 0.00 0.00 2.83
842 846 3.817084 CCAGTCAGCATCAAACAAAGAGA 59.183 43.478 0.00 0.00 0.00 3.10
843 847 4.458295 CCAGTCAGCATCAAACAAAGAGAT 59.542 41.667 0.00 0.00 0.00 2.75
848 852 5.410746 TCAGCATCAAACAAAGAGATCAGAC 59.589 40.000 0.00 0.00 0.00 3.51
857 861 4.111198 CAAAGAGATCAGACGTGAGATGG 58.889 47.826 0.00 0.00 35.66 3.51
858 862 2.305928 AGAGATCAGACGTGAGATGGG 58.694 52.381 0.00 0.00 35.66 4.00
918 948 4.278310 TCTCCCTTTATAAAGCAAAGCCC 58.722 43.478 18.18 0.00 34.69 5.19
921 951 3.132824 CCCTTTATAAAGCAAAGCCCTGG 59.867 47.826 18.18 8.02 34.69 4.45
951 981 4.142491 ACAATTACACCACAACACACACAG 60.142 41.667 0.00 0.00 0.00 3.66
952 982 1.374560 TACACCACAACACACACAGC 58.625 50.000 0.00 0.00 0.00 4.40
981 1015 0.831966 AGAGCTCCTGCATCTCCAAG 59.168 55.000 10.93 0.00 42.74 3.61
1005 1040 2.237392 GCGGAAGGATAGGATAATGGCT 59.763 50.000 0.00 0.00 0.00 4.75
1146 1184 1.261238 CCAAGAGCGACCTCCTCCTT 61.261 60.000 0.00 0.00 38.96 3.36
1168 1206 1.764571 CTCCAACCCCGTCCACAAGA 61.765 60.000 0.00 0.00 0.00 3.02
1169 1207 1.149627 CCAACCCCGTCCACAAGAA 59.850 57.895 0.00 0.00 0.00 2.52
1170 1208 0.889186 CCAACCCCGTCCACAAGAAG 60.889 60.000 0.00 0.00 0.00 2.85
1171 1209 0.889186 CAACCCCGTCCACAAGAAGG 60.889 60.000 0.00 0.00 43.28 3.46
1172 1210 1.350310 AACCCCGTCCACAAGAAGGT 61.350 55.000 0.00 0.00 42.19 3.50
1173 1211 1.003718 CCCCGTCCACAAGAAGGTC 60.004 63.158 0.00 0.00 42.19 3.85
1174 1212 1.003718 CCCGTCCACAAGAAGGTCC 60.004 63.158 0.00 0.00 42.19 4.46
1175 1213 1.003718 CCGTCCACAAGAAGGTCCC 60.004 63.158 0.00 0.00 39.15 4.46
1176 1214 1.752198 CGTCCACAAGAAGGTCCCA 59.248 57.895 0.00 0.00 0.00 4.37
1177 1215 0.602905 CGTCCACAAGAAGGTCCCAC 60.603 60.000 0.00 0.00 0.00 4.61
1178 1216 0.765510 GTCCACAAGAAGGTCCCACT 59.234 55.000 0.00 0.00 0.00 4.00
1179 1217 0.764890 TCCACAAGAAGGTCCCACTG 59.235 55.000 0.00 0.00 0.00 3.66
1180 1218 0.474184 CCACAAGAAGGTCCCACTGT 59.526 55.000 0.00 0.00 0.00 3.55
1181 1219 1.133792 CCACAAGAAGGTCCCACTGTT 60.134 52.381 0.00 0.00 0.00 3.16
1182 1220 2.654863 CACAAGAAGGTCCCACTGTTT 58.345 47.619 0.00 0.00 0.00 2.83
1183 1221 3.023832 CACAAGAAGGTCCCACTGTTTT 58.976 45.455 0.00 0.00 0.00 2.43
1184 1222 4.204012 CACAAGAAGGTCCCACTGTTTTA 58.796 43.478 0.00 0.00 0.00 1.52
1185 1223 4.642885 CACAAGAAGGTCCCACTGTTTTAA 59.357 41.667 0.00 0.00 0.00 1.52
1186 1224 5.126384 CACAAGAAGGTCCCACTGTTTTAAA 59.874 40.000 0.00 0.00 0.00 1.52
1187 1225 5.897250 ACAAGAAGGTCCCACTGTTTTAAAT 59.103 36.000 0.00 0.00 0.00 1.40
1188 1226 7.013846 CACAAGAAGGTCCCACTGTTTTAAATA 59.986 37.037 0.00 0.00 0.00 1.40
1189 1227 7.230712 ACAAGAAGGTCCCACTGTTTTAAATAG 59.769 37.037 0.00 0.00 0.00 1.73
1190 1228 5.710567 AGAAGGTCCCACTGTTTTAAATAGC 59.289 40.000 1.36 0.00 0.00 2.97
1191 1229 4.341487 AGGTCCCACTGTTTTAAATAGCC 58.659 43.478 1.36 0.00 0.00 3.93
1192 1230 3.446161 GGTCCCACTGTTTTAAATAGCCC 59.554 47.826 1.36 0.00 0.00 5.19
1193 1231 3.128068 GTCCCACTGTTTTAAATAGCCCG 59.872 47.826 1.36 0.00 0.00 6.13
1194 1232 2.159296 CCCACTGTTTTAAATAGCCCGC 60.159 50.000 1.36 0.00 0.00 6.13
1195 1233 2.752903 CCACTGTTTTAAATAGCCCGCT 59.247 45.455 1.36 0.00 0.00 5.52
1196 1234 3.942748 CCACTGTTTTAAATAGCCCGCTA 59.057 43.478 0.00 0.00 0.00 4.26
1197 1235 4.578928 CCACTGTTTTAAATAGCCCGCTAT 59.421 41.667 3.31 3.31 40.63 2.97
1198 1236 5.761234 CCACTGTTTTAAATAGCCCGCTATA 59.239 40.000 9.56 0.00 38.20 1.31
1199 1237 6.073222 CCACTGTTTTAAATAGCCCGCTATAG 60.073 42.308 9.56 4.62 38.20 1.31
1200 1238 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
1201 1239 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
1202 1240 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
1203 1241 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
1204 1242 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1205 1243 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1206 1244 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1207 1245 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1215 1253 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1216 1254 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1217 1255 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1218 1256 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1219 1257 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1237 1275 6.830114 GCTATAGCGTTTACACAAGATCTT 57.170 37.500 9.40 0.88 0.00 2.40
1238 1276 6.641062 GCTATAGCGTTTACACAAGATCTTG 58.359 40.000 29.74 29.74 45.58 3.02
1239 1277 3.813529 AGCGTTTACACAAGATCTTGC 57.186 42.857 30.95 16.82 44.03 4.01
1240 1278 2.157668 AGCGTTTACACAAGATCTTGCG 59.842 45.455 30.95 25.22 44.03 4.85
1241 1279 2.495939 CGTTTACACAAGATCTTGCGC 58.504 47.619 30.95 15.40 44.03 6.09
1242 1280 2.157668 CGTTTACACAAGATCTTGCGCT 59.842 45.455 30.95 17.54 44.03 5.92
1243 1281 3.366724 CGTTTACACAAGATCTTGCGCTA 59.633 43.478 30.95 16.64 44.03 4.26
1244 1282 4.143200 CGTTTACACAAGATCTTGCGCTAA 60.143 41.667 30.95 20.60 44.03 3.09
1245 1283 5.316770 GTTTACACAAGATCTTGCGCTAAG 58.683 41.667 30.95 17.49 44.03 2.18
1254 1292 2.688507 TCTTGCGCTAAGAGACTTTGG 58.311 47.619 9.73 0.00 40.43 3.28
1255 1293 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
1256 1294 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
1257 1295 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
1258 1296 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
1259 1297 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
1260 1298 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
1261 1299 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
1262 1300 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
1263 1301 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
1264 1302 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
1265 1303 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
1266 1304 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
1267 1305 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
1268 1306 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
1269 1307 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
1270 1308 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
1271 1309 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
1272 1310 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
1273 1311 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
1274 1312 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
1275 1313 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
1276 1314 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
1277 1315 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
1278 1316 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
1279 1317 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
1289 1327 7.099666 TGAACAAACATTTTAAATAGCACGC 57.900 32.000 0.00 0.00 0.00 5.34
1290 1328 6.920758 TGAACAAACATTTTAAATAGCACGCT 59.079 30.769 0.00 0.00 0.00 5.07
1291 1329 8.076781 TGAACAAACATTTTAAATAGCACGCTA 58.923 29.630 0.39 0.39 0.00 4.26
1292 1330 8.980143 AACAAACATTTTAAATAGCACGCTAT 57.020 26.923 5.72 5.72 40.63 2.97
1294 1332 9.716507 ACAAACATTTTAAATAGCACGCTATAG 57.283 29.630 11.80 0.00 38.20 1.31
1295 1333 8.682016 CAAACATTTTAAATAGCACGCTATAGC 58.318 33.333 15.09 15.09 38.20 2.97
1296 1334 7.730364 ACATTTTAAATAGCACGCTATAGCT 57.270 32.000 21.98 6.31 44.55 3.32
1297 1335 7.797819 ACATTTTAAATAGCACGCTATAGCTC 58.202 34.615 21.98 11.04 42.05 4.09
1298 1336 6.780706 TTTTAAATAGCACGCTATAGCTCC 57.219 37.500 21.98 10.06 42.05 4.70
1299 1337 2.638556 AATAGCACGCTATAGCTCCG 57.361 50.000 21.98 9.62 42.05 4.63
1300 1338 0.171455 ATAGCACGCTATAGCTCCGC 59.829 55.000 21.98 19.37 42.05 5.54
1301 1339 0.889638 TAGCACGCTATAGCTCCGCT 60.890 55.000 25.78 25.78 42.05 5.52
1302 1340 0.889638 AGCACGCTATAGCTCCGCTA 60.890 55.000 23.10 0.00 45.55 4.26
1310 1348 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1311 1349 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1312 1350 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1313 1351 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1314 1352 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1322 1360 5.709011 CTATAGCACGCTATAGCATTTGG 57.291 43.478 25.42 9.98 46.26 3.28
1323 1361 2.620251 AGCACGCTATAGCATTTGGA 57.380 45.000 23.99 0.00 42.21 3.53
1324 1362 2.917933 AGCACGCTATAGCATTTGGAA 58.082 42.857 23.99 0.00 42.21 3.53
1325 1363 2.874701 AGCACGCTATAGCATTTGGAAG 59.125 45.455 23.99 7.87 42.21 3.46
1326 1364 2.872245 GCACGCTATAGCATTTGGAAGA 59.128 45.455 23.99 0.00 42.21 2.87
1327 1365 3.059325 GCACGCTATAGCATTTGGAAGAG 60.059 47.826 23.99 6.48 42.21 2.85
1328 1366 3.496130 CACGCTATAGCATTTGGAAGAGG 59.504 47.826 23.99 5.98 42.21 3.69
1329 1367 3.134804 ACGCTATAGCATTTGGAAGAGGT 59.865 43.478 23.99 6.60 42.21 3.85
1330 1368 3.743396 CGCTATAGCATTTGGAAGAGGTC 59.257 47.826 23.99 0.00 42.21 3.85
1331 1369 4.068599 GCTATAGCATTTGGAAGAGGTCC 58.931 47.826 20.01 0.00 43.38 4.46
1332 1370 5.330561 GCTATAGCATTTGGAAGAGGTCCG 61.331 50.000 20.01 0.00 44.91 4.79
1338 1376 3.145551 GGAAGAGGTCCGCCGCTA 61.146 66.667 0.00 0.00 44.34 4.26
1339 1377 2.718073 GGAAGAGGTCCGCCGCTAA 61.718 63.158 0.00 0.00 44.34 3.09
1340 1378 1.227002 GAAGAGGTCCGCCGCTAAG 60.227 63.158 0.00 0.00 44.34 2.18
1341 1379 1.664321 GAAGAGGTCCGCCGCTAAGA 61.664 60.000 0.00 0.00 44.34 2.10
1342 1380 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
1343 1381 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
1344 1382 2.017559 GAGGTCCGCCGCTAAGATGT 62.018 60.000 0.00 0.00 40.50 3.06
1345 1383 1.153429 GGTCCGCCGCTAAGATGTT 60.153 57.895 0.00 0.00 0.00 2.71
1346 1384 0.743345 GGTCCGCCGCTAAGATGTTT 60.743 55.000 0.00 0.00 0.00 2.83
1347 1385 1.472026 GGTCCGCCGCTAAGATGTTTA 60.472 52.381 0.00 0.00 0.00 2.01
1348 1386 1.859080 GTCCGCCGCTAAGATGTTTAG 59.141 52.381 0.00 0.00 0.00 1.85
1349 1387 0.582005 CCGCCGCTAAGATGTTTAGC 59.418 55.000 8.48 8.48 42.82 3.09
1353 1391 3.422646 GCTAAGATGTTTAGCGCGC 57.577 52.632 26.66 26.66 38.12 6.86
1354 1392 0.931005 GCTAAGATGTTTAGCGCGCT 59.069 50.000 38.01 38.01 38.12 5.92
1355 1393 2.124903 GCTAAGATGTTTAGCGCGCTA 58.875 47.619 35.48 35.48 38.12 4.26
1356 1394 2.731976 GCTAAGATGTTTAGCGCGCTAT 59.268 45.455 38.51 26.50 38.12 2.97
1357 1395 3.184581 GCTAAGATGTTTAGCGCGCTATT 59.815 43.478 38.51 29.13 38.12 1.73
1358 1396 4.318831 GCTAAGATGTTTAGCGCGCTATTT 60.319 41.667 38.51 25.20 38.12 1.40
1359 1397 5.107607 GCTAAGATGTTTAGCGCGCTATTTA 60.108 40.000 38.51 26.65 38.12 1.40
1360 1398 5.728351 AAGATGTTTAGCGCGCTATTTAA 57.272 34.783 38.51 27.43 0.00 1.52
1361 1399 5.728351 AGATGTTTAGCGCGCTATTTAAA 57.272 34.783 38.51 28.65 0.00 1.52
1362 1400 6.114221 AGATGTTTAGCGCGCTATTTAAAA 57.886 33.333 38.51 28.28 0.00 1.52
1363 1401 5.963586 AGATGTTTAGCGCGCTATTTAAAAC 59.036 36.000 38.51 35.54 0.00 2.43
1364 1402 5.285798 TGTTTAGCGCGCTATTTAAAACT 57.714 34.783 36.45 18.84 0.00 2.66
1365 1403 6.406093 TGTTTAGCGCGCTATTTAAAACTA 57.594 33.333 36.45 26.69 0.00 2.24
1366 1404 7.007313 TGTTTAGCGCGCTATTTAAAACTAT 57.993 32.000 36.45 18.24 0.00 2.12
1367 1405 6.902948 TGTTTAGCGCGCTATTTAAAACTATG 59.097 34.615 36.45 0.00 0.00 2.23
1368 1406 4.468095 AGCGCGCTATTTAAAACTATGG 57.532 40.909 35.79 0.00 0.00 2.74
1474 1512 4.421554 CCCCTCTGCTCCTCCCCA 62.422 72.222 0.00 0.00 0.00 4.96
1574 1612 1.616628 GGAAGCTCAAGGGGGAGGA 60.617 63.158 0.00 0.00 35.41 3.71
1612 1650 1.216444 GACATGCTGGAGACGCTCA 59.784 57.895 8.71 0.00 31.08 4.26
1681 1719 2.488403 TTCGGGTTCGTGGACGTCA 61.488 57.895 18.91 0.27 40.80 4.35
1683 1721 2.356673 GGGTTCGTGGACGTCACC 60.357 66.667 18.91 15.24 43.23 4.02
1756 1794 2.035155 TCGAGGAAGAGTGCCCGA 59.965 61.111 0.00 0.00 0.00 5.14
1796 1834 3.462678 GTGCGGGGAGAGGGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
1878 1916 3.076104 CTACGGCCTCGAGTAGTCA 57.924 57.895 12.31 0.00 40.11 3.41
1879 1917 0.938713 CTACGGCCTCGAGTAGTCAG 59.061 60.000 12.31 0.00 40.11 3.51
1880 1918 1.094073 TACGGCCTCGAGTAGTCAGC 61.094 60.000 12.31 6.11 40.11 4.26
1881 1919 2.115911 CGGCCTCGAGTAGTCAGCT 61.116 63.158 12.31 0.00 39.00 4.24
1965 2019 9.796120 TTGTTTGTGTTTAATTTGAGTCTTAGG 57.204 29.630 0.00 0.00 0.00 2.69
1966 2020 8.410141 TGTTTGTGTTTAATTTGAGTCTTAGGG 58.590 33.333 0.00 0.00 0.00 3.53
1967 2021 6.569179 TGTGTTTAATTTGAGTCTTAGGGC 57.431 37.500 0.00 0.00 0.00 5.19
1968 2022 5.475564 TGTGTTTAATTTGAGTCTTAGGGCC 59.524 40.000 0.00 0.00 0.00 5.80
1969 2023 5.710567 GTGTTTAATTTGAGTCTTAGGGCCT 59.289 40.000 12.58 12.58 0.00 5.19
1970 2024 5.710099 TGTTTAATTTGAGTCTTAGGGCCTG 59.290 40.000 18.53 0.00 0.00 4.85
1971 2025 5.514500 TTAATTTGAGTCTTAGGGCCTGT 57.486 39.130 18.53 0.00 0.00 4.00
1972 2026 4.388577 AATTTGAGTCTTAGGGCCTGTT 57.611 40.909 18.53 0.00 0.00 3.16
1973 2027 3.418684 TTTGAGTCTTAGGGCCTGTTC 57.581 47.619 18.53 6.95 0.00 3.18
1974 2028 2.327325 TGAGTCTTAGGGCCTGTTCT 57.673 50.000 18.53 9.15 0.00 3.01
1975 2029 1.902508 TGAGTCTTAGGGCCTGTTCTG 59.097 52.381 18.53 1.43 0.00 3.02
1976 2030 2.180276 GAGTCTTAGGGCCTGTTCTGA 58.820 52.381 18.53 4.00 0.00 3.27
1977 2031 2.769095 GAGTCTTAGGGCCTGTTCTGAT 59.231 50.000 18.53 0.00 0.00 2.90
1978 2032 2.769095 AGTCTTAGGGCCTGTTCTGATC 59.231 50.000 18.53 0.00 0.00 2.92
1979 2033 2.769095 GTCTTAGGGCCTGTTCTGATCT 59.231 50.000 18.53 0.00 0.00 2.75
1980 2034 3.034635 TCTTAGGGCCTGTTCTGATCTC 58.965 50.000 18.53 0.00 0.00 2.75
1981 2035 1.794714 TAGGGCCTGTTCTGATCTCC 58.205 55.000 18.53 0.00 0.00 3.71
1982 2036 0.043940 AGGGCCTGTTCTGATCTCCT 59.956 55.000 4.50 0.00 0.00 3.69
1983 2037 0.467804 GGGCCTGTTCTGATCTCCTC 59.532 60.000 0.84 0.00 0.00 3.71
1984 2038 0.467804 GGCCTGTTCTGATCTCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
1985 2039 1.198713 GCCTGTTCTGATCTCCTCCA 58.801 55.000 0.00 0.00 0.00 3.86
1986 2040 1.556911 GCCTGTTCTGATCTCCTCCAA 59.443 52.381 0.00 0.00 0.00 3.53
1987 2041 2.679349 GCCTGTTCTGATCTCCTCCAAC 60.679 54.545 0.00 0.00 0.00 3.77
1988 2042 2.836981 CCTGTTCTGATCTCCTCCAACT 59.163 50.000 0.00 0.00 0.00 3.16
1989 2043 3.262915 CCTGTTCTGATCTCCTCCAACTT 59.737 47.826 0.00 0.00 0.00 2.66
1990 2044 4.502962 CTGTTCTGATCTCCTCCAACTTC 58.497 47.826 0.00 0.00 0.00 3.01
1991 2045 3.903714 TGTTCTGATCTCCTCCAACTTCA 59.096 43.478 0.00 0.00 0.00 3.02
1992 2046 4.020751 TGTTCTGATCTCCTCCAACTTCAG 60.021 45.833 0.00 0.00 33.55 3.02
1993 2047 4.053009 TCTGATCTCCTCCAACTTCAGA 57.947 45.455 0.00 0.00 37.76 3.27
1994 2048 4.420206 TCTGATCTCCTCCAACTTCAGAA 58.580 43.478 0.00 0.00 37.31 3.02
1995 2049 4.840680 TCTGATCTCCTCCAACTTCAGAAA 59.159 41.667 0.00 0.00 37.31 2.52
1996 2050 5.307976 TCTGATCTCCTCCAACTTCAGAAAA 59.692 40.000 0.00 0.00 37.31 2.29
1997 2051 5.308825 TGATCTCCTCCAACTTCAGAAAAC 58.691 41.667 0.00 0.00 0.00 2.43
1998 2052 5.072329 TGATCTCCTCCAACTTCAGAAAACT 59.928 40.000 0.00 0.00 0.00 2.66
1999 2053 5.373812 TCTCCTCCAACTTCAGAAAACTT 57.626 39.130 0.00 0.00 0.00 2.66
2000 2054 5.368989 TCTCCTCCAACTTCAGAAAACTTC 58.631 41.667 0.00 0.00 0.00 3.01
2001 2055 5.131142 TCTCCTCCAACTTCAGAAAACTTCT 59.869 40.000 0.00 0.00 41.70 2.85
2002 2056 5.368989 TCCTCCAACTTCAGAAAACTTCTC 58.631 41.667 0.00 0.00 38.11 2.87
2003 2057 5.104527 TCCTCCAACTTCAGAAAACTTCTCA 60.105 40.000 0.00 0.00 38.11 3.27
2004 2058 5.590259 CCTCCAACTTCAGAAAACTTCTCAA 59.410 40.000 0.00 0.00 38.11 3.02
2005 2059 6.095440 CCTCCAACTTCAGAAAACTTCTCAAA 59.905 38.462 0.00 0.00 38.11 2.69
2006 2060 7.362920 CCTCCAACTTCAGAAAACTTCTCAAAA 60.363 37.037 0.00 0.00 38.11 2.44
2007 2061 7.891561 TCCAACTTCAGAAAACTTCTCAAAAA 58.108 30.769 0.00 0.00 38.11 1.94
2008 2062 7.812669 TCCAACTTCAGAAAACTTCTCAAAAAC 59.187 33.333 0.00 0.00 38.11 2.43
2009 2063 7.063426 CCAACTTCAGAAAACTTCTCAAAAACC 59.937 37.037 0.00 0.00 38.11 3.27
2010 2064 7.227049 ACTTCAGAAAACTTCTCAAAAACCA 57.773 32.000 0.00 0.00 38.11 3.67
2011 2065 7.315890 ACTTCAGAAAACTTCTCAAAAACCAG 58.684 34.615 0.00 0.00 38.11 4.00
2012 2066 5.650543 TCAGAAAACTTCTCAAAAACCAGC 58.349 37.500 0.00 0.00 38.11 4.85
2013 2067 5.418840 TCAGAAAACTTCTCAAAAACCAGCT 59.581 36.000 0.00 0.00 38.11 4.24
2014 2068 6.071391 TCAGAAAACTTCTCAAAAACCAGCTT 60.071 34.615 0.00 0.00 38.11 3.74
2015 2069 6.254373 CAGAAAACTTCTCAAAAACCAGCTTC 59.746 38.462 0.00 0.00 38.11 3.86
2016 2070 5.921962 AAACTTCTCAAAAACCAGCTTCT 57.078 34.783 0.00 0.00 0.00 2.85
2017 2071 5.506686 AACTTCTCAAAAACCAGCTTCTC 57.493 39.130 0.00 0.00 0.00 2.87
2018 2072 4.526970 ACTTCTCAAAAACCAGCTTCTCA 58.473 39.130 0.00 0.00 0.00 3.27
2019 2073 4.336713 ACTTCTCAAAAACCAGCTTCTCAC 59.663 41.667 0.00 0.00 0.00 3.51
2020 2074 2.872245 TCTCAAAAACCAGCTTCTCACG 59.128 45.455 0.00 0.00 0.00 4.35
2021 2075 1.333619 TCAAAAACCAGCTTCTCACGC 59.666 47.619 0.00 0.00 0.00 5.34
2022 2076 1.334869 CAAAAACCAGCTTCTCACGCT 59.665 47.619 0.00 0.00 38.49 5.07
2023 2077 2.543777 AAAACCAGCTTCTCACGCTA 57.456 45.000 0.00 0.00 35.63 4.26
2024 2078 2.086054 AAACCAGCTTCTCACGCTAG 57.914 50.000 0.00 0.00 35.63 3.42
2025 2079 0.390472 AACCAGCTTCTCACGCTAGC 60.390 55.000 4.06 4.06 35.63 3.42
2026 2080 1.254284 ACCAGCTTCTCACGCTAGCT 61.254 55.000 13.93 0.00 45.64 3.32
2027 2081 0.108424 CCAGCTTCTCACGCTAGCTT 60.108 55.000 13.93 0.00 42.30 3.74
2028 2082 1.276415 CAGCTTCTCACGCTAGCTTC 58.724 55.000 13.93 0.00 42.30 3.86
2029 2083 1.135141 CAGCTTCTCACGCTAGCTTCT 60.135 52.381 13.93 0.00 42.30 2.85
2030 2084 2.098280 CAGCTTCTCACGCTAGCTTCTA 59.902 50.000 13.93 0.00 42.30 2.10
2031 2085 2.098443 AGCTTCTCACGCTAGCTTCTAC 59.902 50.000 13.93 0.00 42.30 2.59
2032 2086 2.098443 GCTTCTCACGCTAGCTTCTACT 59.902 50.000 13.93 0.00 32.26 2.57
2033 2087 3.790789 GCTTCTCACGCTAGCTTCTACTC 60.791 52.174 13.93 0.00 32.26 2.59
2034 2088 3.269538 TCTCACGCTAGCTTCTACTCT 57.730 47.619 13.93 0.00 0.00 3.24
2035 2089 2.939756 TCTCACGCTAGCTTCTACTCTG 59.060 50.000 13.93 0.00 0.00 3.35
2036 2090 1.402259 TCACGCTAGCTTCTACTCTGC 59.598 52.381 13.93 0.00 0.00 4.26
2037 2091 0.741915 ACGCTAGCTTCTACTCTGCC 59.258 55.000 13.93 0.00 0.00 4.85
2038 2092 1.028905 CGCTAGCTTCTACTCTGCCT 58.971 55.000 13.93 0.00 0.00 4.75
2039 2093 1.268999 CGCTAGCTTCTACTCTGCCTG 60.269 57.143 13.93 0.00 0.00 4.85
2040 2094 1.068434 GCTAGCTTCTACTCTGCCTGG 59.932 57.143 7.70 0.00 0.00 4.45
2041 2095 1.068434 CTAGCTTCTACTCTGCCTGGC 59.932 57.143 12.87 12.87 0.00 4.85
2042 2096 1.520342 GCTTCTACTCTGCCTGGCG 60.520 63.158 14.98 9.13 0.00 5.69
2043 2097 1.949847 GCTTCTACTCTGCCTGGCGA 61.950 60.000 14.98 12.99 0.00 5.54
2044 2098 0.749649 CTTCTACTCTGCCTGGCGAT 59.250 55.000 14.98 1.53 0.00 4.58
2045 2099 0.747255 TTCTACTCTGCCTGGCGATC 59.253 55.000 14.98 0.00 0.00 3.69
2046 2100 1.007964 CTACTCTGCCTGGCGATCG 60.008 63.158 14.98 11.69 0.00 3.69
2047 2101 3.138930 TACTCTGCCTGGCGATCGC 62.139 63.158 31.52 31.52 41.06 4.58
2050 2104 4.957684 CTGCCTGGCGATCGCGAT 62.958 66.667 31.76 23.97 43.06 4.58
2051 2105 3.558099 CTGCCTGGCGATCGCGATA 62.558 63.158 31.76 19.84 43.06 2.92
2052 2106 3.106407 GCCTGGCGATCGCGATAC 61.106 66.667 31.76 19.26 43.06 2.24
2053 2107 2.801162 CCTGGCGATCGCGATACG 60.801 66.667 31.76 25.16 43.06 3.06
2054 2108 2.051256 CTGGCGATCGCGATACGT 60.051 61.111 31.76 10.62 44.19 3.57
2055 2109 1.657487 CTGGCGATCGCGATACGTT 60.657 57.895 31.76 10.27 44.19 3.99
2056 2110 1.597700 CTGGCGATCGCGATACGTTC 61.598 60.000 31.76 23.11 44.19 3.95
2064 2118 4.916412 CGATACGTTCGGCTCGAT 57.084 55.556 0.00 0.00 44.28 3.59
2065 2119 2.697495 CGATACGTTCGGCTCGATC 58.303 57.895 0.00 0.00 44.28 3.69
2066 2120 0.725118 CGATACGTTCGGCTCGATCC 60.725 60.000 0.00 0.00 44.28 3.36
2067 2121 0.309922 GATACGTTCGGCTCGATCCA 59.690 55.000 6.06 0.00 35.23 3.41
2068 2122 0.959553 ATACGTTCGGCTCGATCCAT 59.040 50.000 6.06 0.00 35.23 3.41
2069 2123 1.596603 TACGTTCGGCTCGATCCATA 58.403 50.000 6.06 0.00 35.23 2.74
2070 2124 0.311165 ACGTTCGGCTCGATCCATAG 59.689 55.000 6.06 0.00 35.23 2.23
2071 2125 1.004277 CGTTCGGCTCGATCCATAGC 61.004 60.000 6.06 0.00 35.23 2.97
2072 2126 0.315568 GTTCGGCTCGATCCATAGCT 59.684 55.000 6.06 0.00 38.80 3.32
2073 2127 1.040646 TTCGGCTCGATCCATAGCTT 58.959 50.000 6.06 0.00 38.80 3.74
2074 2128 0.598562 TCGGCTCGATCCATAGCTTC 59.401 55.000 6.06 0.00 38.80 3.86
2075 2129 0.600557 CGGCTCGATCCATAGCTTCT 59.399 55.000 6.06 0.00 38.80 2.85
2076 2130 1.000283 CGGCTCGATCCATAGCTTCTT 60.000 52.381 6.06 0.00 38.80 2.52
2077 2131 2.682836 GGCTCGATCCATAGCTTCTTC 58.317 52.381 0.00 0.00 38.80 2.87
2078 2132 2.323959 GCTCGATCCATAGCTTCTTCG 58.676 52.381 0.00 0.00 35.80 3.79
2079 2133 2.030717 GCTCGATCCATAGCTTCTTCGA 60.031 50.000 0.00 0.00 35.80 3.71
2080 2134 3.820689 CTCGATCCATAGCTTCTTCGAG 58.179 50.000 15.11 15.11 44.21 4.04
2081 2135 2.554462 TCGATCCATAGCTTCTTCGAGG 59.446 50.000 0.00 0.00 32.46 4.63
2082 2136 2.352225 CGATCCATAGCTTCTTCGAGGG 60.352 54.545 0.00 0.00 0.00 4.30
2083 2137 0.753262 TCCATAGCTTCTTCGAGGGC 59.247 55.000 0.00 0.00 0.00 5.19
2084 2138 0.755686 CCATAGCTTCTTCGAGGGCT 59.244 55.000 0.00 3.93 38.62 5.19
2085 2139 1.270041 CCATAGCTTCTTCGAGGGCTC 60.270 57.143 1.67 0.00 36.40 4.70
2086 2140 1.044611 ATAGCTTCTTCGAGGGCTCC 58.955 55.000 1.67 0.00 36.40 4.70
2087 2141 0.324368 TAGCTTCTTCGAGGGCTCCA 60.324 55.000 1.67 0.00 36.40 3.86
2088 2142 0.980231 AGCTTCTTCGAGGGCTCCAT 60.980 55.000 0.00 0.00 0.00 3.41
2089 2143 0.107459 GCTTCTTCGAGGGCTCCATT 60.107 55.000 0.00 0.00 0.00 3.16
2090 2144 1.661341 CTTCTTCGAGGGCTCCATTG 58.339 55.000 0.00 0.00 0.00 2.82
2091 2145 0.392998 TTCTTCGAGGGCTCCATTGC 60.393 55.000 0.00 0.00 0.00 3.56
2099 2153 3.834799 GCTCCATTGCCTGGCAGC 61.835 66.667 22.17 17.23 45.52 5.25
2100 2154 3.145551 CTCCATTGCCTGGCAGCC 61.146 66.667 22.17 3.66 45.52 4.85
2101 2155 4.764771 TCCATTGCCTGGCAGCCC 62.765 66.667 22.17 2.50 45.52 5.19
2103 2157 2.998480 CATTGCCTGGCAGCCCAA 60.998 61.111 22.17 17.29 41.58 4.12
2104 2158 2.999063 ATTGCCTGGCAGCCCAAC 60.999 61.111 22.17 0.00 41.58 3.77
2105 2159 3.534704 ATTGCCTGGCAGCCCAACT 62.535 57.895 22.17 7.63 41.58 3.16
2106 2160 2.153898 ATTGCCTGGCAGCCCAACTA 62.154 55.000 22.17 4.53 41.58 2.24
2107 2161 2.035626 GCCTGGCAGCCCAACTAA 59.964 61.111 15.17 0.00 41.58 2.24
2108 2162 2.343426 GCCTGGCAGCCCAACTAAC 61.343 63.158 15.17 0.00 41.58 2.34
2109 2163 1.678970 CCTGGCAGCCCAACTAACC 60.679 63.158 9.64 0.00 41.58 2.85
2110 2164 1.074775 CTGGCAGCCCAACTAACCA 59.925 57.895 9.64 0.00 41.58 3.67
2111 2165 0.539438 CTGGCAGCCCAACTAACCAA 60.539 55.000 9.64 0.00 41.58 3.67
2112 2166 0.105964 TGGCAGCCCAACTAACCAAA 60.106 50.000 9.64 0.00 38.46 3.28
2113 2167 1.044611 GGCAGCCCAACTAACCAAAA 58.955 50.000 0.00 0.00 0.00 2.44
2114 2168 1.623311 GGCAGCCCAACTAACCAAAAT 59.377 47.619 0.00 0.00 0.00 1.82
2115 2169 2.038426 GGCAGCCCAACTAACCAAAATT 59.962 45.455 0.00 0.00 0.00 1.82
2116 2170 3.495983 GGCAGCCCAACTAACCAAAATTT 60.496 43.478 0.00 0.00 0.00 1.82
2117 2171 3.498018 GCAGCCCAACTAACCAAAATTTG 59.502 43.478 0.00 0.00 0.00 2.32
2127 2181 1.794512 CCAAAATTTGGCCTGTTCGG 58.205 50.000 12.23 0.00 45.17 4.30
2128 2182 1.342819 CCAAAATTTGGCCTGTTCGGA 59.657 47.619 12.23 0.00 45.17 4.55
2129 2183 2.610232 CCAAAATTTGGCCTGTTCGGAG 60.610 50.000 12.23 0.00 45.17 4.63
2130 2184 1.256812 AAATTTGGCCTGTTCGGAGG 58.743 50.000 3.32 0.00 36.03 4.30
2137 2191 2.183409 CCTGTTCGGAGGCATTTGG 58.817 57.895 0.00 0.00 33.16 3.28
2138 2192 1.315257 CCTGTTCGGAGGCATTTGGG 61.315 60.000 0.00 0.00 33.16 4.12
2139 2193 1.937546 CTGTTCGGAGGCATTTGGGC 61.938 60.000 0.00 0.00 43.80 5.36
2146 2200 2.361104 GGCATTTGGGCCGACTGA 60.361 61.111 14.94 0.00 45.40 3.41
2147 2201 1.976474 GGCATTTGGGCCGACTGAA 60.976 57.895 14.94 0.00 45.40 3.02
2148 2202 1.531739 GGCATTTGGGCCGACTGAAA 61.532 55.000 14.94 1.78 45.40 2.69
2149 2203 0.388520 GCATTTGGGCCGACTGAAAC 60.389 55.000 14.94 0.00 0.00 2.78
2150 2204 0.958091 CATTTGGGCCGACTGAAACA 59.042 50.000 5.17 0.00 0.00 2.83
2151 2205 1.068333 CATTTGGGCCGACTGAAACAG 60.068 52.381 5.17 0.00 37.52 3.16
2152 2206 1.452145 TTTGGGCCGACTGAAACAGC 61.452 55.000 0.00 0.00 34.37 4.40
2158 2212 1.247567 CCGACTGAAACAGCCCATTT 58.752 50.000 0.00 0.00 34.37 2.32
2162 2216 3.610114 CGACTGAAACAGCCCATTTTGAG 60.610 47.826 0.00 0.00 34.37 3.02
2173 2227 3.557228 CCATTTTGAGGGAGAGAGGAG 57.443 52.381 0.00 0.00 0.00 3.69
2174 2228 3.110705 CCATTTTGAGGGAGAGAGGAGA 58.889 50.000 0.00 0.00 0.00 3.71
2175 2229 3.134442 CCATTTTGAGGGAGAGAGGAGAG 59.866 52.174 0.00 0.00 0.00 3.20
2176 2230 1.859302 TTTGAGGGAGAGAGGAGAGC 58.141 55.000 0.00 0.00 0.00 4.09
2177 2231 0.395036 TTGAGGGAGAGAGGAGAGCG 60.395 60.000 0.00 0.00 0.00 5.03
2178 2232 1.275421 TGAGGGAGAGAGGAGAGCGA 61.275 60.000 0.00 0.00 0.00 4.93
2179 2233 0.106918 GAGGGAGAGAGGAGAGCGAA 60.107 60.000 0.00 0.00 0.00 4.70
2180 2234 0.395173 AGGGAGAGAGGAGAGCGAAC 60.395 60.000 0.00 0.00 0.00 3.95
2181 2235 0.681564 GGGAGAGAGGAGAGCGAACA 60.682 60.000 0.00 0.00 0.00 3.18
2182 2236 0.738389 GGAGAGAGGAGAGCGAACAG 59.262 60.000 0.00 0.00 0.00 3.16
2183 2237 1.459450 GAGAGAGGAGAGCGAACAGT 58.541 55.000 0.00 0.00 0.00 3.55
2184 2238 1.816224 GAGAGAGGAGAGCGAACAGTT 59.184 52.381 0.00 0.00 0.00 3.16
2185 2239 2.230266 GAGAGAGGAGAGCGAACAGTTT 59.770 50.000 0.00 0.00 0.00 2.66
2186 2240 2.230266 AGAGAGGAGAGCGAACAGTTTC 59.770 50.000 0.00 0.00 0.00 2.78
2187 2241 2.230266 GAGAGGAGAGCGAACAGTTTCT 59.770 50.000 0.00 0.00 0.00 2.52
2188 2242 2.630580 AGAGGAGAGCGAACAGTTTCTT 59.369 45.455 0.00 0.00 0.00 2.52
2189 2243 3.070302 AGAGGAGAGCGAACAGTTTCTTT 59.930 43.478 0.00 0.00 0.00 2.52
2190 2244 4.281182 AGAGGAGAGCGAACAGTTTCTTTA 59.719 41.667 0.00 0.00 0.00 1.85
2191 2245 5.046950 AGAGGAGAGCGAACAGTTTCTTTAT 60.047 40.000 0.00 0.00 0.00 1.40
2192 2246 4.932200 AGGAGAGCGAACAGTTTCTTTATG 59.068 41.667 0.00 0.00 0.00 1.90
2193 2247 4.691216 GGAGAGCGAACAGTTTCTTTATGT 59.309 41.667 0.00 0.00 0.00 2.29
2194 2248 5.867716 GGAGAGCGAACAGTTTCTTTATGTA 59.132 40.000 0.00 0.00 0.00 2.29
2195 2249 6.183360 GGAGAGCGAACAGTTTCTTTATGTAC 60.183 42.308 0.00 0.00 0.00 2.90
2196 2250 5.638234 AGAGCGAACAGTTTCTTTATGTACC 59.362 40.000 0.00 0.00 0.00 3.34
2197 2251 4.387862 AGCGAACAGTTTCTTTATGTACCG 59.612 41.667 0.00 0.00 0.00 4.02
2198 2252 4.386652 GCGAACAGTTTCTTTATGTACCGA 59.613 41.667 0.00 0.00 0.00 4.69
2199 2253 5.063060 GCGAACAGTTTCTTTATGTACCGAT 59.937 40.000 0.00 0.00 0.00 4.18
2200 2254 6.401796 GCGAACAGTTTCTTTATGTACCGATT 60.402 38.462 0.00 0.00 0.00 3.34
2201 2255 7.171434 CGAACAGTTTCTTTATGTACCGATTC 58.829 38.462 0.00 0.00 0.00 2.52
2202 2256 6.642683 ACAGTTTCTTTATGTACCGATTCG 57.357 37.500 0.00 0.00 0.00 3.34
2203 2257 6.161381 ACAGTTTCTTTATGTACCGATTCGT 58.839 36.000 5.20 0.00 0.00 3.85
2204 2258 6.647895 ACAGTTTCTTTATGTACCGATTCGTT 59.352 34.615 5.20 0.00 0.00 3.85
2205 2259 7.172019 ACAGTTTCTTTATGTACCGATTCGTTT 59.828 33.333 5.20 0.00 0.00 3.60
2206 2260 8.013378 CAGTTTCTTTATGTACCGATTCGTTTT 58.987 33.333 5.20 0.00 0.00 2.43
2207 2261 8.225777 AGTTTCTTTATGTACCGATTCGTTTTC 58.774 33.333 5.20 0.00 0.00 2.29
2208 2262 6.651755 TCTTTATGTACCGATTCGTTTTCC 57.348 37.500 5.20 0.00 0.00 3.13
2209 2263 6.400568 TCTTTATGTACCGATTCGTTTTCCT 58.599 36.000 5.20 0.00 0.00 3.36
2210 2264 6.875195 TCTTTATGTACCGATTCGTTTTCCTT 59.125 34.615 5.20 0.00 0.00 3.36
2211 2265 8.034215 TCTTTATGTACCGATTCGTTTTCCTTA 58.966 33.333 5.20 0.00 0.00 2.69
2212 2266 7.524294 TTATGTACCGATTCGTTTTCCTTAC 57.476 36.000 5.20 0.00 0.00 2.34
2213 2267 3.919804 TGTACCGATTCGTTTTCCTTACG 59.080 43.478 5.20 0.00 40.23 3.18
2214 2268 3.302365 ACCGATTCGTTTTCCTTACGA 57.698 42.857 5.20 0.00 45.34 3.43
2218 2272 3.871775 TCGTTTTCCTTACGAGCGT 57.128 47.368 0.00 0.00 42.51 5.07
2219 2273 1.689959 TCGTTTTCCTTACGAGCGTC 58.310 50.000 0.00 0.00 42.51 5.19
2220 2274 0.361184 CGTTTTCCTTACGAGCGTCG 59.639 55.000 0.00 5.97 46.93 5.12
2221 2275 1.689959 GTTTTCCTTACGAGCGTCGA 58.310 50.000 13.06 0.00 43.74 4.20
2222 2276 1.647702 GTTTTCCTTACGAGCGTCGAG 59.352 52.381 13.06 0.00 43.74 4.04
2223 2277 0.455633 TTTCCTTACGAGCGTCGAGC 60.456 55.000 13.06 0.00 43.74 5.03
2232 2286 3.400590 GCGTCGAGCGAACCGTTT 61.401 61.111 10.82 0.00 44.77 3.60
2233 2287 2.935446 GCGTCGAGCGAACCGTTTT 61.935 57.895 10.82 0.00 44.77 2.43
2234 2288 1.127225 CGTCGAGCGAACCGTTTTC 59.873 57.895 0.00 0.00 44.77 2.29
2235 2289 1.273455 CGTCGAGCGAACCGTTTTCT 61.273 55.000 0.00 0.00 44.77 2.52
2254 2308 6.904463 TTTCTTTAGCGGAAAACCCTATTT 57.096 33.333 0.00 0.00 30.94 1.40
2386 2449 3.749749 CCCTGAACCGGGGTTTTTA 57.250 52.632 6.32 0.00 44.75 1.52
2387 2450 1.541379 CCCTGAACCGGGGTTTTTAG 58.459 55.000 6.32 0.00 44.75 1.85
2388 2451 0.885879 CCTGAACCGGGGTTTTTAGC 59.114 55.000 6.32 0.00 38.60 3.09
2545 2640 6.521036 TCGCAAATTTATGAAAAATGTTCGC 58.479 32.000 0.00 0.00 0.00 4.70
2579 2675 9.574458 TTTTTGTTCGTGAGTTTCAATAAATGA 57.426 25.926 0.00 0.00 35.85 2.57
2584 2680 7.921786 TCGTGAGTTTCAATAAATGATCCTT 57.078 32.000 0.00 0.00 38.03 3.36
2658 2759 9.157104 GTTTAGGAATTTCAAAAAGTGTTCCAA 57.843 29.630 2.94 0.00 38.02 3.53
2790 2897 6.042638 TGTTCCTGTTCCAAAATTTGTTCA 57.957 33.333 4.92 0.75 0.00 3.18
2850 2962 5.040635 TCAGAGTTTTGAAAAATGTTCCGC 58.959 37.500 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 4.084822 TCCTCGAGGGAGCTAGGA 57.915 61.111 30.80 6.65 39.58 2.94
690 693 7.396339 TCCAATGATCATACTAGTATAACGCCT 59.604 37.037 15.03 0.00 0.00 5.52
727 731 3.916392 CTCGTGCCTCGTGGGTCAC 62.916 68.421 5.54 5.05 40.80 3.67
731 735 2.432628 GAACTCGTGCCTCGTGGG 60.433 66.667 5.54 0.00 40.80 4.61
757 761 5.981915 AGGAACGCGAGAAGGTTATATTAAC 59.018 40.000 15.93 0.00 0.00 2.01
812 816 1.278985 TGATGCTGACTGGGTAAGTGG 59.721 52.381 0.00 0.00 40.07 4.00
813 817 2.768253 TGATGCTGACTGGGTAAGTG 57.232 50.000 0.00 0.00 40.07 3.16
814 818 3.181445 TGTTTGATGCTGACTGGGTAAGT 60.181 43.478 0.00 0.00 43.85 2.24
815 819 3.411446 TGTTTGATGCTGACTGGGTAAG 58.589 45.455 0.00 0.00 0.00 2.34
816 820 3.500448 TGTTTGATGCTGACTGGGTAA 57.500 42.857 0.00 0.00 0.00 2.85
817 821 3.500448 TTGTTTGATGCTGACTGGGTA 57.500 42.857 0.00 0.00 0.00 3.69
818 822 2.363306 TTGTTTGATGCTGACTGGGT 57.637 45.000 0.00 0.00 0.00 4.51
819 823 2.886523 TCTTTGTTTGATGCTGACTGGG 59.113 45.455 0.00 0.00 0.00 4.45
837 841 2.692557 CCCATCTCACGTCTGATCTCTT 59.307 50.000 0.00 0.00 0.00 2.85
842 846 3.981071 TTTTCCCATCTCACGTCTGAT 57.019 42.857 0.00 0.00 0.00 2.90
843 847 3.762407 TTTTTCCCATCTCACGTCTGA 57.238 42.857 0.00 0.00 0.00 3.27
848 852 5.411361 TCACACTTATTTTTCCCATCTCACG 59.589 40.000 0.00 0.00 0.00 4.35
918 948 1.812571 GGTGTAATTGTGTGCTCCCAG 59.187 52.381 0.00 0.00 0.00 4.45
921 951 2.226330 TGTGGTGTAATTGTGTGCTCC 58.774 47.619 0.00 0.00 0.00 4.70
951 981 1.069636 CAGGAGCTCTGTTTGTTTCGC 60.070 52.381 14.64 0.00 38.64 4.70
952 982 1.069636 GCAGGAGCTCTGTTTGTTTCG 60.070 52.381 14.64 0.00 45.08 3.46
981 1015 3.118592 CCATTATCCTATCCTTCCGCTCC 60.119 52.174 0.00 0.00 0.00 4.70
1005 1040 2.203788 AGCCCCGTCTTCTCACCA 60.204 61.111 0.00 0.00 0.00 4.17
1168 1206 4.770531 GGCTATTTAAAACAGTGGGACCTT 59.229 41.667 0.00 0.00 0.00 3.50
1169 1207 4.341487 GGCTATTTAAAACAGTGGGACCT 58.659 43.478 0.00 0.00 0.00 3.85
1170 1208 3.446161 GGGCTATTTAAAACAGTGGGACC 59.554 47.826 0.00 0.00 0.00 4.46
1171 1209 3.128068 CGGGCTATTTAAAACAGTGGGAC 59.872 47.826 0.00 0.00 0.00 4.46
1172 1210 3.349022 CGGGCTATTTAAAACAGTGGGA 58.651 45.455 0.00 0.00 0.00 4.37
1173 1211 2.159296 GCGGGCTATTTAAAACAGTGGG 60.159 50.000 0.00 0.00 0.00 4.61
1174 1212 2.752903 AGCGGGCTATTTAAAACAGTGG 59.247 45.455 0.00 0.00 0.00 4.00
1175 1213 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
1176 1214 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
1177 1215 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
1178 1216 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
1199 1237 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1200 1238 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1214 1252 6.641062 CAAGATCTTGTGTAAACGCTATAGC 58.359 40.000 24.65 15.09 35.92 2.97
1215 1253 6.560433 CGCAAGATCTTGTGTAAACGCTATAG 60.560 42.308 31.86 7.26 43.79 1.31
1216 1254 5.231357 CGCAAGATCTTGTGTAAACGCTATA 59.769 40.000 31.86 0.00 43.79 1.31
1217 1255 4.032900 CGCAAGATCTTGTGTAAACGCTAT 59.967 41.667 31.86 0.00 43.79 2.97
1218 1256 3.366724 CGCAAGATCTTGTGTAAACGCTA 59.633 43.478 31.86 0.00 43.79 4.26
1219 1257 2.157668 CGCAAGATCTTGTGTAAACGCT 59.842 45.455 31.86 0.00 43.79 5.07
1220 1258 2.495939 CGCAAGATCTTGTGTAAACGC 58.504 47.619 31.86 17.43 43.79 4.84
1228 1266 3.194542 AGTCTCTTAGCGCAAGATCTTGT 59.805 43.478 30.88 17.41 42.44 3.16
1229 1267 3.779759 AGTCTCTTAGCGCAAGATCTTG 58.220 45.455 27.82 27.82 42.44 3.02
1230 1268 4.464069 AAGTCTCTTAGCGCAAGATCTT 57.536 40.909 11.47 17.90 42.44 2.40
1231 1269 4.180057 CAAAGTCTCTTAGCGCAAGATCT 58.820 43.478 11.47 13.81 42.44 2.75
1232 1270 3.308323 CCAAAGTCTCTTAGCGCAAGATC 59.692 47.826 11.47 12.04 42.44 2.75
1233 1271 3.265791 CCAAAGTCTCTTAGCGCAAGAT 58.734 45.455 11.47 0.00 42.44 2.40
1234 1272 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
1235 1273 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
1236 1274 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
1237 1275 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
1238 1276 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
1239 1277 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
1240 1278 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
1241 1279 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
1242 1280 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
1243 1281 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
1244 1282 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
1245 1283 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
1246 1284 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
1247 1285 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
1248 1286 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
1249 1287 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
1250 1288 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
1251 1289 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
1252 1290 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
1253 1291 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
1263 1301 8.220434 GCGTGCTATTTAAAATGTTTGTTCATT 58.780 29.630 0.00 0.00 39.35 2.57
1264 1302 7.598493 AGCGTGCTATTTAAAATGTTTGTTCAT 59.402 29.630 0.00 0.00 0.00 2.57
1265 1303 6.920758 AGCGTGCTATTTAAAATGTTTGTTCA 59.079 30.769 0.00 0.00 0.00 3.18
1266 1304 7.333288 AGCGTGCTATTTAAAATGTTTGTTC 57.667 32.000 0.00 0.00 0.00 3.18
1267 1305 8.980143 ATAGCGTGCTATTTAAAATGTTTGTT 57.020 26.923 8.54 0.00 35.92 2.83
1268 1306 9.716507 CTATAGCGTGCTATTTAAAATGTTTGT 57.283 29.630 18.62 0.00 39.65 2.83
1269 1307 8.682016 GCTATAGCGTGCTATTTAAAATGTTTG 58.318 33.333 18.62 0.00 39.65 2.93
1270 1308 8.782533 GCTATAGCGTGCTATTTAAAATGTTT 57.217 30.769 18.62 0.00 39.65 2.83
1294 1332 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1295 1333 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1301 1339 5.400066 TCCAAATGCTATAGCGTGCTATA 57.600 39.130 20.02 17.96 45.83 1.31
1302 1340 4.271696 TCCAAATGCTATAGCGTGCTAT 57.728 40.909 20.02 17.65 45.83 2.97
1303 1341 3.744238 TCCAAATGCTATAGCGTGCTA 57.256 42.857 20.02 3.73 45.83 3.49
1304 1342 2.620251 TCCAAATGCTATAGCGTGCT 57.380 45.000 20.02 7.98 45.83 4.40
1305 1343 2.872245 TCTTCCAAATGCTATAGCGTGC 59.128 45.455 20.02 0.00 45.83 5.34
1306 1344 3.496130 CCTCTTCCAAATGCTATAGCGTG 59.504 47.826 20.02 16.14 45.83 5.34
1307 1345 3.134804 ACCTCTTCCAAATGCTATAGCGT 59.865 43.478 19.55 16.84 45.83 5.07
1308 1346 3.733337 ACCTCTTCCAAATGCTATAGCG 58.267 45.455 19.55 5.29 45.83 4.26
1309 1347 4.068599 GGACCTCTTCCAAATGCTATAGC 58.931 47.826 18.18 18.18 45.10 2.97
1310 1348 4.310769 CGGACCTCTTCCAAATGCTATAG 58.689 47.826 0.00 0.00 46.29 1.31
1311 1349 3.494398 GCGGACCTCTTCCAAATGCTATA 60.494 47.826 0.00 0.00 46.29 1.31
1312 1350 2.746472 GCGGACCTCTTCCAAATGCTAT 60.746 50.000 0.00 0.00 46.29 2.97
1313 1351 1.406887 GCGGACCTCTTCCAAATGCTA 60.407 52.381 0.00 0.00 46.29 3.49
1314 1352 0.678048 GCGGACCTCTTCCAAATGCT 60.678 55.000 0.00 0.00 46.29 3.79
1315 1353 1.657751 GGCGGACCTCTTCCAAATGC 61.658 60.000 0.00 0.00 46.29 3.56
1316 1354 1.369091 CGGCGGACCTCTTCCAAATG 61.369 60.000 0.00 0.00 46.29 2.32
1317 1355 1.078426 CGGCGGACCTCTTCCAAAT 60.078 57.895 0.00 0.00 46.29 2.32
1318 1356 2.345991 CGGCGGACCTCTTCCAAA 59.654 61.111 0.00 0.00 46.29 3.28
1319 1357 4.388499 GCGGCGGACCTCTTCCAA 62.388 66.667 9.78 0.00 46.29 3.53
1320 1358 3.949885 TAGCGGCGGACCTCTTCCA 62.950 63.158 9.78 0.00 46.29 3.53
1321 1359 2.630592 CTTAGCGGCGGACCTCTTCC 62.631 65.000 9.78 0.00 41.75 3.46
1322 1360 1.227002 CTTAGCGGCGGACCTCTTC 60.227 63.158 9.78 0.00 31.87 2.87
1323 1361 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
1324 1362 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
1325 1363 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
1326 1364 1.614241 AACATCTTAGCGGCGGACCT 61.614 55.000 9.78 0.00 0.00 3.85
1327 1365 0.743345 AAACATCTTAGCGGCGGACC 60.743 55.000 9.78 0.00 0.00 4.46
1328 1366 1.859080 CTAAACATCTTAGCGGCGGAC 59.141 52.381 9.78 0.00 0.00 4.79
1329 1367 1.805120 GCTAAACATCTTAGCGGCGGA 60.805 52.381 9.78 0.00 38.12 5.54
1330 1368 0.582005 GCTAAACATCTTAGCGGCGG 59.418 55.000 9.78 0.00 38.12 6.13
1335 1373 0.931005 AGCGCGCTAAACATCTTAGC 59.069 50.000 35.79 6.45 42.82 3.09
1336 1374 4.974103 AATAGCGCGCTAAACATCTTAG 57.026 40.909 40.90 0.00 31.73 2.18
1337 1375 6.831727 TTAAATAGCGCGCTAAACATCTTA 57.168 33.333 40.90 25.72 31.73 2.10
1338 1376 5.728351 TTAAATAGCGCGCTAAACATCTT 57.272 34.783 40.90 27.25 31.73 2.40
1339 1377 5.728351 TTTAAATAGCGCGCTAAACATCT 57.272 34.783 40.90 23.18 31.73 2.90
1340 1378 5.963586 AGTTTTAAATAGCGCGCTAAACATC 59.036 36.000 37.51 26.91 31.73 3.06
1341 1379 5.875930 AGTTTTAAATAGCGCGCTAAACAT 58.124 33.333 37.51 28.41 31.73 2.71
1342 1380 5.285798 AGTTTTAAATAGCGCGCTAAACA 57.714 34.783 37.51 26.96 31.73 2.83
1343 1381 6.356190 CCATAGTTTTAAATAGCGCGCTAAAC 59.644 38.462 40.90 36.47 31.73 2.01
1344 1382 6.258287 TCCATAGTTTTAAATAGCGCGCTAAA 59.742 34.615 40.90 29.86 31.73 1.85
1345 1383 5.754406 TCCATAGTTTTAAATAGCGCGCTAA 59.246 36.000 40.90 26.03 31.73 3.09
1346 1384 5.291178 TCCATAGTTTTAAATAGCGCGCTA 58.709 37.500 39.72 39.72 0.00 4.26
1347 1385 4.124238 TCCATAGTTTTAAATAGCGCGCT 58.876 39.130 38.01 38.01 0.00 5.92
1348 1386 4.461992 TCCATAGTTTTAAATAGCGCGC 57.538 40.909 26.66 26.66 0.00 6.86
1349 1387 5.007332 ACCTTCCATAGTTTTAAATAGCGCG 59.993 40.000 0.00 0.00 0.00 6.86
1350 1388 6.373186 ACCTTCCATAGTTTTAAATAGCGC 57.627 37.500 0.00 0.00 0.00 5.92
1351 1389 6.017357 GGGACCTTCCATAGTTTTAAATAGCG 60.017 42.308 0.00 0.00 38.64 4.26
1352 1390 7.273320 GGGACCTTCCATAGTTTTAAATAGC 57.727 40.000 0.00 0.00 38.64 2.97
1461 1499 3.992641 TCGGTGGGGAGGAGCAGA 61.993 66.667 0.00 0.00 0.00 4.26
1528 1566 3.706373 CCCGCAGCTGTACACCCT 61.706 66.667 16.64 0.00 0.00 4.34
1554 1592 1.284841 CCTCCCCCTTGAGCTTCCAT 61.285 60.000 0.00 0.00 0.00 3.41
1596 1634 1.521010 CCTGAGCGTCTCCAGCATG 60.521 63.158 4.73 0.00 37.01 4.06
1635 1673 1.425428 GCCGAAGAATGCCTTGTCG 59.575 57.895 0.00 0.00 34.68 4.35
1640 1678 2.436646 CACCGCCGAAGAATGCCT 60.437 61.111 0.00 0.00 0.00 4.75
1644 1682 2.125106 GCCTCACCGCCGAAGAAT 60.125 61.111 0.00 0.00 0.00 2.40
1681 1719 1.664321 GACGTGAGCGGTATGAGGGT 61.664 60.000 0.00 0.00 43.45 4.34
1683 1721 1.298413 CGACGTGAGCGGTATGAGG 60.298 63.158 0.00 0.00 43.45 3.86
1796 1834 3.636231 TCAGGACCTTGGCCACGG 61.636 66.667 26.13 26.13 29.21 4.94
1877 1915 3.138798 GCATCCACCAGCCAGCTG 61.139 66.667 12.78 12.78 43.26 4.24
1878 1916 4.790962 CGCATCCACCAGCCAGCT 62.791 66.667 0.00 0.00 0.00 4.24
1880 1918 3.129502 CACGCATCCACCAGCCAG 61.130 66.667 0.00 0.00 0.00 4.85
1881 1919 4.720902 CCACGCATCCACCAGCCA 62.721 66.667 0.00 0.00 0.00 4.75
1900 1954 5.343307 AACTCCATGAAAGCAAACAGTTT 57.657 34.783 0.00 0.00 0.00 2.66
1964 2018 0.467804 GAGGAGATCAGAACAGGCCC 59.532 60.000 0.00 0.00 0.00 5.80
1965 2019 0.467804 GGAGGAGATCAGAACAGGCC 59.532 60.000 0.00 0.00 0.00 5.19
1966 2020 1.198713 TGGAGGAGATCAGAACAGGC 58.801 55.000 0.00 0.00 0.00 4.85
1967 2021 2.836981 AGTTGGAGGAGATCAGAACAGG 59.163 50.000 0.00 0.00 0.00 4.00
1968 2022 4.020751 TGAAGTTGGAGGAGATCAGAACAG 60.021 45.833 0.00 0.00 0.00 3.16
1969 2023 3.903714 TGAAGTTGGAGGAGATCAGAACA 59.096 43.478 0.00 0.00 0.00 3.18
1970 2024 4.221703 TCTGAAGTTGGAGGAGATCAGAAC 59.778 45.833 0.00 0.00 40.03 3.01
1971 2025 4.420206 TCTGAAGTTGGAGGAGATCAGAA 58.580 43.478 0.00 0.00 40.03 3.02
1972 2026 4.053009 TCTGAAGTTGGAGGAGATCAGA 57.947 45.455 0.00 0.00 40.53 3.27
1973 2027 4.815533 TTCTGAAGTTGGAGGAGATCAG 57.184 45.455 0.00 0.00 36.50 2.90
1974 2028 5.072329 AGTTTTCTGAAGTTGGAGGAGATCA 59.928 40.000 0.00 0.00 0.00 2.92
1975 2029 5.555966 AGTTTTCTGAAGTTGGAGGAGATC 58.444 41.667 0.00 0.00 0.00 2.75
1976 2030 5.574970 AGTTTTCTGAAGTTGGAGGAGAT 57.425 39.130 0.00 0.00 0.00 2.75
1977 2031 5.131142 AGAAGTTTTCTGAAGTTGGAGGAGA 59.869 40.000 0.00 0.00 38.91 3.71
1978 2032 5.372373 AGAAGTTTTCTGAAGTTGGAGGAG 58.628 41.667 0.00 0.00 38.91 3.69
1979 2033 5.104527 TGAGAAGTTTTCTGAAGTTGGAGGA 60.105 40.000 0.00 0.00 40.87 3.71
1980 2034 5.126067 TGAGAAGTTTTCTGAAGTTGGAGG 58.874 41.667 0.00 0.00 40.87 4.30
1981 2035 6.683974 TTGAGAAGTTTTCTGAAGTTGGAG 57.316 37.500 0.00 0.00 40.87 3.86
1982 2036 7.461182 TTTTGAGAAGTTTTCTGAAGTTGGA 57.539 32.000 0.00 0.00 40.87 3.53
1983 2037 7.063426 GGTTTTTGAGAAGTTTTCTGAAGTTGG 59.937 37.037 0.00 0.00 40.87 3.77
1984 2038 7.598493 TGGTTTTTGAGAAGTTTTCTGAAGTTG 59.402 33.333 0.00 0.00 40.87 3.16
1985 2039 7.666623 TGGTTTTTGAGAAGTTTTCTGAAGTT 58.333 30.769 0.00 0.00 40.87 2.66
1986 2040 7.227049 TGGTTTTTGAGAAGTTTTCTGAAGT 57.773 32.000 0.00 0.00 40.87 3.01
1987 2041 6.254373 GCTGGTTTTTGAGAAGTTTTCTGAAG 59.746 38.462 0.00 0.00 40.87 3.02
1988 2042 6.071391 AGCTGGTTTTTGAGAAGTTTTCTGAA 60.071 34.615 0.00 0.00 40.87 3.02
1989 2043 5.418840 AGCTGGTTTTTGAGAAGTTTTCTGA 59.581 36.000 0.00 0.00 40.87 3.27
1990 2044 5.654497 AGCTGGTTTTTGAGAAGTTTTCTG 58.346 37.500 0.00 0.00 40.87 3.02
1991 2045 5.921962 AGCTGGTTTTTGAGAAGTTTTCT 57.078 34.783 0.00 0.00 44.21 2.52
1992 2046 6.333416 AGAAGCTGGTTTTTGAGAAGTTTTC 58.667 36.000 0.00 0.00 0.00 2.29
1993 2047 6.071391 TGAGAAGCTGGTTTTTGAGAAGTTTT 60.071 34.615 0.00 0.00 0.00 2.43
1994 2048 5.418840 TGAGAAGCTGGTTTTTGAGAAGTTT 59.581 36.000 0.00 0.00 0.00 2.66
1995 2049 4.949856 TGAGAAGCTGGTTTTTGAGAAGTT 59.050 37.500 0.00 0.00 0.00 2.66
1996 2050 4.336713 GTGAGAAGCTGGTTTTTGAGAAGT 59.663 41.667 0.00 0.00 0.00 3.01
1997 2051 4.553547 CGTGAGAAGCTGGTTTTTGAGAAG 60.554 45.833 0.00 0.00 0.00 2.85
1998 2052 3.312421 CGTGAGAAGCTGGTTTTTGAGAA 59.688 43.478 0.00 0.00 0.00 2.87
1999 2053 2.872245 CGTGAGAAGCTGGTTTTTGAGA 59.128 45.455 0.00 0.00 0.00 3.27
2000 2054 2.603173 GCGTGAGAAGCTGGTTTTTGAG 60.603 50.000 0.00 0.00 0.00 3.02
2001 2055 1.333619 GCGTGAGAAGCTGGTTTTTGA 59.666 47.619 0.00 0.00 0.00 2.69
2002 2056 1.334869 AGCGTGAGAAGCTGGTTTTTG 59.665 47.619 0.00 0.00 44.22 2.44
2003 2057 1.680338 AGCGTGAGAAGCTGGTTTTT 58.320 45.000 0.00 0.00 44.22 1.94
2004 2058 2.417719 CTAGCGTGAGAAGCTGGTTTT 58.582 47.619 0.49 0.00 45.60 2.43
2005 2059 1.941668 GCTAGCGTGAGAAGCTGGTTT 60.942 52.381 0.00 0.00 45.60 3.27
2006 2060 0.390472 GCTAGCGTGAGAAGCTGGTT 60.390 55.000 0.00 0.00 45.60 3.67
2007 2061 1.216710 GCTAGCGTGAGAAGCTGGT 59.783 57.895 0.00 0.00 45.60 4.00
2008 2062 0.108424 AAGCTAGCGTGAGAAGCTGG 60.108 55.000 9.55 0.00 46.83 4.85
2009 2063 1.135141 AGAAGCTAGCGTGAGAAGCTG 60.135 52.381 8.23 0.00 46.83 4.24
2011 2065 2.098443 AGTAGAAGCTAGCGTGAGAAGC 59.902 50.000 8.23 0.00 40.61 3.86
2012 2066 3.625764 AGAGTAGAAGCTAGCGTGAGAAG 59.374 47.826 8.23 0.00 0.00 2.85
2013 2067 3.375610 CAGAGTAGAAGCTAGCGTGAGAA 59.624 47.826 8.23 0.00 0.00 2.87
2014 2068 2.939756 CAGAGTAGAAGCTAGCGTGAGA 59.060 50.000 8.23 0.00 0.00 3.27
2015 2069 2.540769 GCAGAGTAGAAGCTAGCGTGAG 60.541 54.545 8.23 0.00 0.00 3.51
2016 2070 1.402259 GCAGAGTAGAAGCTAGCGTGA 59.598 52.381 8.23 0.00 0.00 4.35
2017 2071 1.535015 GGCAGAGTAGAAGCTAGCGTG 60.535 57.143 8.23 0.00 0.00 5.34
2018 2072 0.741915 GGCAGAGTAGAAGCTAGCGT 59.258 55.000 9.55 5.81 0.00 5.07
2019 2073 1.028905 AGGCAGAGTAGAAGCTAGCG 58.971 55.000 9.55 0.00 0.00 4.26
2020 2074 1.068434 CCAGGCAGAGTAGAAGCTAGC 59.932 57.143 6.62 6.62 0.00 3.42
2021 2075 1.068434 GCCAGGCAGAGTAGAAGCTAG 59.932 57.143 6.55 0.00 0.00 3.42
2022 2076 1.115467 GCCAGGCAGAGTAGAAGCTA 58.885 55.000 6.55 0.00 0.00 3.32
2023 2077 1.904032 GCCAGGCAGAGTAGAAGCT 59.096 57.895 6.55 0.00 0.00 3.74
2024 2078 1.520342 CGCCAGGCAGAGTAGAAGC 60.520 63.158 13.30 0.00 0.00 3.86
2025 2079 0.749649 ATCGCCAGGCAGAGTAGAAG 59.250 55.000 13.30 0.00 0.00 2.85
2026 2080 0.747255 GATCGCCAGGCAGAGTAGAA 59.253 55.000 13.30 0.00 0.00 2.10
2027 2081 1.448119 CGATCGCCAGGCAGAGTAGA 61.448 60.000 13.30 0.00 0.00 2.59
2028 2082 1.007964 CGATCGCCAGGCAGAGTAG 60.008 63.158 13.30 0.00 0.00 2.57
2029 2083 3.120105 CGATCGCCAGGCAGAGTA 58.880 61.111 13.30 0.00 0.00 2.59
2030 2084 4.521062 GCGATCGCCAGGCAGAGT 62.521 66.667 29.48 0.00 34.56 3.24
2033 2087 3.558099 TATCGCGATCGCCAGGCAG 62.558 63.158 32.63 18.28 37.98 4.85
2034 2088 3.601685 TATCGCGATCGCCAGGCA 61.602 61.111 32.63 13.02 37.98 4.75
2035 2089 3.106407 GTATCGCGATCGCCAGGC 61.106 66.667 32.63 17.46 37.98 4.85
2036 2090 2.801162 CGTATCGCGATCGCCAGG 60.801 66.667 32.63 19.75 44.77 4.45
2037 2091 1.597700 GAACGTATCGCGATCGCCAG 61.598 60.000 32.63 20.49 44.77 4.85
2038 2092 1.656263 GAACGTATCGCGATCGCCA 60.656 57.895 32.63 22.88 44.77 5.69
2039 2093 3.135722 GAACGTATCGCGATCGCC 58.864 61.111 32.63 18.24 44.77 5.54
2048 2102 0.309922 TGGATCGAGCCGAACGTATC 59.690 55.000 16.16 0.00 39.99 2.24
2049 2103 0.959553 ATGGATCGAGCCGAACGTAT 59.040 50.000 16.16 0.00 39.99 3.06
2050 2104 1.534163 CTATGGATCGAGCCGAACGTA 59.466 52.381 16.16 0.00 39.99 3.57
2051 2105 0.311165 CTATGGATCGAGCCGAACGT 59.689 55.000 16.16 0.98 39.99 3.99
2052 2106 1.004277 GCTATGGATCGAGCCGAACG 61.004 60.000 16.16 4.51 39.99 3.95
2053 2107 0.315568 AGCTATGGATCGAGCCGAAC 59.684 55.000 16.16 4.43 39.99 3.95
2054 2108 1.000163 GAAGCTATGGATCGAGCCGAA 60.000 52.381 16.16 4.29 39.99 4.30
2055 2109 0.598562 GAAGCTATGGATCGAGCCGA 59.401 55.000 16.16 4.45 39.65 5.54
2056 2110 0.600557 AGAAGCTATGGATCGAGCCG 59.399 55.000 16.16 1.48 39.65 5.52
2057 2111 2.682836 GAAGAAGCTATGGATCGAGCC 58.317 52.381 14.17 14.17 39.65 4.70
2058 2112 2.030717 TCGAAGAAGCTATGGATCGAGC 60.031 50.000 0.00 0.00 39.08 5.03
2059 2113 3.820689 CTCGAAGAAGCTATGGATCGAG 58.179 50.000 17.16 17.16 46.64 4.04
2060 2114 2.554462 CCTCGAAGAAGCTATGGATCGA 59.446 50.000 8.89 8.89 37.68 3.59
2061 2115 2.352225 CCCTCGAAGAAGCTATGGATCG 60.352 54.545 0.00 0.00 34.09 3.69
2062 2116 2.611722 GCCCTCGAAGAAGCTATGGATC 60.612 54.545 0.00 0.00 34.09 3.36
2063 2117 1.346068 GCCCTCGAAGAAGCTATGGAT 59.654 52.381 0.00 0.00 34.09 3.41
2064 2118 0.753262 GCCCTCGAAGAAGCTATGGA 59.247 55.000 0.00 0.00 34.09 3.41
2065 2119 0.755686 AGCCCTCGAAGAAGCTATGG 59.244 55.000 0.00 0.00 43.23 2.74
2066 2120 1.270041 GGAGCCCTCGAAGAAGCTATG 60.270 57.143 0.00 0.00 44.73 2.23
2067 2121 1.044611 GGAGCCCTCGAAGAAGCTAT 58.955 55.000 0.00 0.00 44.73 2.97
2068 2122 0.324368 TGGAGCCCTCGAAGAAGCTA 60.324 55.000 0.00 0.00 44.73 3.32
2069 2123 0.980231 ATGGAGCCCTCGAAGAAGCT 60.980 55.000 0.00 0.00 46.92 3.74
2070 2124 0.107459 AATGGAGCCCTCGAAGAAGC 60.107 55.000 0.00 0.00 36.28 3.86
2071 2125 1.661341 CAATGGAGCCCTCGAAGAAG 58.339 55.000 0.00 0.00 34.09 2.85
2072 2126 0.392998 GCAATGGAGCCCTCGAAGAA 60.393 55.000 0.00 0.00 34.09 2.52
2073 2127 1.221840 GCAATGGAGCCCTCGAAGA 59.778 57.895 0.00 0.00 0.00 2.87
2074 2128 3.819188 GCAATGGAGCCCTCGAAG 58.181 61.111 0.00 0.00 0.00 3.79
2086 2140 2.998480 TTGGGCTGCCAGGCAATG 60.998 61.111 22.05 5.88 43.44 2.82
2087 2141 2.153898 TAGTTGGGCTGCCAGGCAAT 62.154 55.000 22.05 2.04 43.44 3.56
2088 2142 2.364722 TTAGTTGGGCTGCCAGGCAA 62.365 55.000 22.05 12.71 43.44 4.52
2089 2143 2.839609 TTAGTTGGGCTGCCAGGCA 61.840 57.895 22.05 15.23 43.44 4.75
2090 2144 2.035626 TTAGTTGGGCTGCCAGGC 59.964 61.111 22.05 10.26 40.51 4.85
2091 2145 1.678970 GGTTAGTTGGGCTGCCAGG 60.679 63.158 22.05 0.00 0.00 4.45
2092 2146 0.539438 TTGGTTAGTTGGGCTGCCAG 60.539 55.000 22.05 0.00 35.86 4.85
2093 2147 0.105964 TTTGGTTAGTTGGGCTGCCA 60.106 50.000 22.05 3.69 33.76 4.92
2094 2148 1.044611 TTTTGGTTAGTTGGGCTGCC 58.955 50.000 11.05 11.05 0.00 4.85
2095 2149 3.401033 AATTTTGGTTAGTTGGGCTGC 57.599 42.857 0.00 0.00 0.00 5.25
2096 2150 4.064388 CCAAATTTTGGTTAGTTGGGCTG 58.936 43.478 18.34 0.00 45.93 4.85
2097 2151 4.350368 CCAAATTTTGGTTAGTTGGGCT 57.650 40.909 18.34 0.00 45.93 5.19
2109 2163 2.610232 CCTCCGAACAGGCCAAATTTTG 60.610 50.000 5.01 1.99 40.77 2.44
2110 2164 1.618343 CCTCCGAACAGGCCAAATTTT 59.382 47.619 5.01 0.00 40.77 1.82
2111 2165 1.256812 CCTCCGAACAGGCCAAATTT 58.743 50.000 5.01 0.00 40.77 1.82
2112 2166 2.961424 CCTCCGAACAGGCCAAATT 58.039 52.632 5.01 0.00 40.77 1.82
2113 2167 4.743018 CCTCCGAACAGGCCAAAT 57.257 55.556 5.01 0.00 40.77 2.32
2119 2173 1.315257 CCCAAATGCCTCCGAACAGG 61.315 60.000 0.00 0.00 42.97 4.00
2120 2174 1.937546 GCCCAAATGCCTCCGAACAG 61.938 60.000 0.00 0.00 0.00 3.16
2121 2175 1.976474 GCCCAAATGCCTCCGAACA 60.976 57.895 0.00 0.00 0.00 3.18
2122 2176 2.885113 GCCCAAATGCCTCCGAAC 59.115 61.111 0.00 0.00 0.00 3.95
2130 2184 0.388520 GTTTCAGTCGGCCCAAATGC 60.389 55.000 0.00 0.00 0.00 3.56
2131 2185 0.958091 TGTTTCAGTCGGCCCAAATG 59.042 50.000 0.00 0.00 0.00 2.32
2132 2186 1.247567 CTGTTTCAGTCGGCCCAAAT 58.752 50.000 0.00 0.00 0.00 2.32
2133 2187 1.452145 GCTGTTTCAGTCGGCCCAAA 61.452 55.000 0.00 0.00 33.43 3.28
2134 2188 1.896660 GCTGTTTCAGTCGGCCCAA 60.897 57.895 0.00 0.00 33.43 4.12
2135 2189 2.281484 GCTGTTTCAGTCGGCCCA 60.281 61.111 0.00 0.00 33.43 5.36
2138 2192 1.244019 AATGGGCTGTTTCAGTCGGC 61.244 55.000 0.00 0.00 36.90 5.54
2139 2193 1.247567 AAATGGGCTGTTTCAGTCGG 58.752 50.000 0.00 0.00 36.90 4.79
2140 2194 2.293122 TCAAAATGGGCTGTTTCAGTCG 59.707 45.455 0.00 0.00 36.90 4.18
2141 2195 3.305608 CCTCAAAATGGGCTGTTTCAGTC 60.306 47.826 0.00 0.00 35.05 3.51
2142 2196 2.629617 CCTCAAAATGGGCTGTTTCAGT 59.370 45.455 0.00 0.00 33.43 3.41
2143 2197 2.028748 CCCTCAAAATGGGCTGTTTCAG 60.029 50.000 0.00 0.00 37.99 3.02
2144 2198 1.969923 CCCTCAAAATGGGCTGTTTCA 59.030 47.619 0.00 0.00 37.99 2.69
2145 2199 2.232208 CTCCCTCAAAATGGGCTGTTTC 59.768 50.000 0.00 0.00 44.23 2.78
2146 2200 2.158325 TCTCCCTCAAAATGGGCTGTTT 60.158 45.455 0.00 0.00 44.23 2.83
2147 2201 1.428912 TCTCCCTCAAAATGGGCTGTT 59.571 47.619 0.00 0.00 44.23 3.16
2148 2202 1.005215 CTCTCCCTCAAAATGGGCTGT 59.995 52.381 0.00 0.00 44.23 4.40
2149 2203 1.283029 TCTCTCCCTCAAAATGGGCTG 59.717 52.381 0.00 0.00 44.23 4.85
2150 2204 1.563410 CTCTCTCCCTCAAAATGGGCT 59.437 52.381 0.00 0.00 44.23 5.19
2151 2205 1.409381 CCTCTCTCCCTCAAAATGGGC 60.409 57.143 0.00 0.00 44.23 5.36
2152 2206 2.172293 CTCCTCTCTCCCTCAAAATGGG 59.828 54.545 0.00 0.00 45.90 4.00
2158 2212 0.395036 CGCTCTCCTCTCTCCCTCAA 60.395 60.000 0.00 0.00 0.00 3.02
2162 2216 0.681564 TGTTCGCTCTCCTCTCTCCC 60.682 60.000 0.00 0.00 0.00 4.30
2166 2220 2.230266 AGAAACTGTTCGCTCTCCTCTC 59.770 50.000 0.00 0.00 38.90 3.20
2167 2221 2.243810 AGAAACTGTTCGCTCTCCTCT 58.756 47.619 0.00 0.00 38.90 3.69
2168 2222 2.734276 AGAAACTGTTCGCTCTCCTC 57.266 50.000 0.00 0.00 38.90 3.71
2169 2223 3.477210 AAAGAAACTGTTCGCTCTCCT 57.523 42.857 0.00 0.00 38.90 3.69
2170 2224 4.691216 ACATAAAGAAACTGTTCGCTCTCC 59.309 41.667 0.00 0.00 38.90 3.71
2171 2225 5.847670 ACATAAAGAAACTGTTCGCTCTC 57.152 39.130 0.00 0.00 38.90 3.20
2172 2226 5.638234 GGTACATAAAGAAACTGTTCGCTCT 59.362 40.000 0.00 0.00 38.90 4.09
2173 2227 5.444218 CGGTACATAAAGAAACTGTTCGCTC 60.444 44.000 0.00 0.00 38.90 5.03
2174 2228 4.387862 CGGTACATAAAGAAACTGTTCGCT 59.612 41.667 0.00 0.00 38.90 4.93
2175 2229 4.386652 TCGGTACATAAAGAAACTGTTCGC 59.613 41.667 0.00 0.00 38.90 4.70
2176 2230 6.642683 ATCGGTACATAAAGAAACTGTTCG 57.357 37.500 0.00 0.00 38.90 3.95
2177 2231 7.148689 ACGAATCGGTACATAAAGAAACTGTTC 60.149 37.037 7.80 0.00 0.00 3.18
2178 2232 6.647895 ACGAATCGGTACATAAAGAAACTGTT 59.352 34.615 7.80 0.00 0.00 3.16
2179 2233 6.161381 ACGAATCGGTACATAAAGAAACTGT 58.839 36.000 7.80 0.00 0.00 3.55
2180 2234 6.642683 ACGAATCGGTACATAAAGAAACTG 57.357 37.500 7.80 0.00 0.00 3.16
2181 2235 7.662604 AAACGAATCGGTACATAAAGAAACT 57.337 32.000 7.80 0.00 0.00 2.66
2182 2236 7.479603 GGAAAACGAATCGGTACATAAAGAAAC 59.520 37.037 7.80 0.00 0.00 2.78
2183 2237 7.388500 AGGAAAACGAATCGGTACATAAAGAAA 59.612 33.333 7.80 0.00 0.00 2.52
2184 2238 6.875195 AGGAAAACGAATCGGTACATAAAGAA 59.125 34.615 7.80 0.00 0.00 2.52
2185 2239 6.400568 AGGAAAACGAATCGGTACATAAAGA 58.599 36.000 7.80 0.00 0.00 2.52
2186 2240 6.657836 AGGAAAACGAATCGGTACATAAAG 57.342 37.500 7.80 0.00 0.00 1.85
2187 2241 7.201427 CGTAAGGAAAACGAATCGGTACATAAA 60.201 37.037 7.80 0.00 42.90 1.40
2188 2242 6.253298 CGTAAGGAAAACGAATCGGTACATAA 59.747 38.462 7.80 0.00 42.90 1.90
2189 2243 5.743398 CGTAAGGAAAACGAATCGGTACATA 59.257 40.000 7.80 0.00 42.90 2.29
2190 2244 4.563976 CGTAAGGAAAACGAATCGGTACAT 59.436 41.667 7.80 0.00 42.90 2.29
2191 2245 3.919804 CGTAAGGAAAACGAATCGGTACA 59.080 43.478 7.80 0.00 42.90 2.90
2192 2246 4.165779 TCGTAAGGAAAACGAATCGGTAC 58.834 43.478 7.80 0.00 45.62 3.34
2193 2247 4.433186 TCGTAAGGAAAACGAATCGGTA 57.567 40.909 7.80 0.00 45.62 4.02
2194 2248 3.302365 TCGTAAGGAAAACGAATCGGT 57.698 42.857 7.80 0.00 45.62 4.69
2200 2254 1.689959 GACGCTCGTAAGGAAAACGA 58.310 50.000 0.00 0.00 46.35 3.85
2201 2255 0.361184 CGACGCTCGTAAGGAAAACG 59.639 55.000 0.00 0.00 41.64 3.60
2202 2256 1.647702 CTCGACGCTCGTAAGGAAAAC 59.352 52.381 0.00 0.00 41.35 2.43
2203 2257 1.973138 CTCGACGCTCGTAAGGAAAA 58.027 50.000 0.00 0.00 41.35 2.29
2204 2258 0.455633 GCTCGACGCTCGTAAGGAAA 60.456 55.000 0.00 0.00 41.35 3.13
2205 2259 1.136147 GCTCGACGCTCGTAAGGAA 59.864 57.895 0.00 0.00 41.35 3.36
2206 2260 2.789917 GCTCGACGCTCGTAAGGA 59.210 61.111 0.00 0.00 41.35 3.36
2207 2261 2.573341 TTCGCTCGACGCTCGTAAGG 62.573 60.000 0.00 0.00 41.35 2.69
2208 2262 1.225936 TTCGCTCGACGCTCGTAAG 60.226 57.895 0.00 0.00 41.35 2.34
2209 2263 1.510623 GTTCGCTCGACGCTCGTAA 60.511 57.895 0.00 1.07 41.35 3.18
2210 2264 2.097160 GTTCGCTCGACGCTCGTA 59.903 61.111 0.00 0.00 41.35 3.43
2211 2265 4.755614 GGTTCGCTCGACGCTCGT 62.756 66.667 0.00 0.00 41.35 4.18
2213 2267 4.755614 ACGGTTCGCTCGACGCTC 62.756 66.667 5.53 1.21 43.23 5.03
2214 2268 3.836176 AAACGGTTCGCTCGACGCT 62.836 57.895 0.00 0.00 43.23 5.07
2215 2269 2.791295 GAAAACGGTTCGCTCGACGC 62.791 60.000 0.00 0.40 43.23 5.19
2216 2270 1.127225 GAAAACGGTTCGCTCGACG 59.873 57.895 0.00 0.00 45.62 5.12
2217 2271 0.857287 AAGAAAACGGTTCGCTCGAC 59.143 50.000 0.00 0.00 0.00 4.20
2218 2272 1.574134 AAAGAAAACGGTTCGCTCGA 58.426 45.000 0.00 0.00 0.00 4.04
2219 2273 2.720891 GCTAAAGAAAACGGTTCGCTCG 60.721 50.000 0.00 0.00 0.00 5.03
2220 2274 2.720891 CGCTAAAGAAAACGGTTCGCTC 60.721 50.000 0.00 0.00 0.00 5.03
2221 2275 1.193874 CGCTAAAGAAAACGGTTCGCT 59.806 47.619 0.00 0.00 0.00 4.93
2222 2276 1.587991 CGCTAAAGAAAACGGTTCGC 58.412 50.000 0.00 0.00 0.00 4.70
2223 2277 1.794116 TCCGCTAAAGAAAACGGTTCG 59.206 47.619 0.00 0.00 45.76 3.95
2224 2278 3.883631 TTCCGCTAAAGAAAACGGTTC 57.116 42.857 0.00 0.00 45.76 3.62
2225 2279 4.635833 TTTTCCGCTAAAGAAAACGGTT 57.364 36.364 0.00 0.00 45.76 4.44
2230 2284 6.904463 AATAGGGTTTTCCGCTAAAGAAAA 57.096 33.333 0.00 0.00 40.08 2.29
2231 2285 6.683715 CAAATAGGGTTTTCCGCTAAAGAAA 58.316 36.000 0.00 0.00 41.82 2.52
2232 2286 5.336134 GCAAATAGGGTTTTCCGCTAAAGAA 60.336 40.000 0.00 0.00 41.82 2.52
2233 2287 4.157105 GCAAATAGGGTTTTCCGCTAAAGA 59.843 41.667 0.00 0.00 41.82 2.52
2234 2288 4.421058 GCAAATAGGGTTTTCCGCTAAAG 58.579 43.478 0.00 0.00 41.82 1.85
2235 2289 3.193903 GGCAAATAGGGTTTTCCGCTAAA 59.806 43.478 0.00 0.00 41.82 1.85
2247 2301 1.162800 GCAGAGAGCGGCAAATAGGG 61.163 60.000 1.45 0.00 35.17 3.53
2301 2356 3.323136 CATGTCGGTAGCTCGCGC 61.323 66.667 0.00 0.00 0.00 6.86
2430 2516 9.567776 AAAAGAAACAGAAAAGGAAAAGGAAAA 57.432 25.926 0.00 0.00 0.00 2.29
2431 2517 9.214957 GAAAAGAAACAGAAAAGGAAAAGGAAA 57.785 29.630 0.00 0.00 0.00 3.13
2434 2520 8.777865 AAGAAAAGAAACAGAAAAGGAAAAGG 57.222 30.769 0.00 0.00 0.00 3.11
2545 2640 8.431593 TGAAACTCACGAACAAAAATTGAAAAG 58.568 29.630 0.00 0.00 0.00 2.27
2658 2759 4.993029 TCCGTGAACAAATTTGGAAAGT 57.007 36.364 21.74 0.00 0.00 2.66
2825 2935 6.035542 GCGGAACATTTTTCAAAACTCTGAAA 59.964 34.615 0.00 0.00 42.21 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.