Multiple sequence alignment - TraesCS3B01G408700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G408700 chr3B 100.000 2678 0 0 1 2678 644305772 644303095 0.000000e+00 4946
1 TraesCS3B01G408700 chr3B 91.421 746 60 2 957 1699 644272482 644271738 0.000000e+00 1020
2 TraesCS3B01G408700 chr3D 86.840 1269 91 34 465 1699 482199437 482198211 0.000000e+00 1349
3 TraesCS3B01G408700 chr3D 87.459 303 16 12 1 298 482199704 482199419 1.990000e-86 329
4 TraesCS3B01G408700 chr3D 95.385 130 6 0 339 468 23055400 23055529 9.720000e-50 207
5 TraesCS3B01G408700 chr7A 88.676 627 61 5 2049 2674 30244992 30245609 0.000000e+00 756
6 TraesCS3B01G408700 chr7A 91.096 146 11 2 329 474 231553637 231553494 2.100000e-46 196
7 TraesCS3B01G408700 chr3A 92.430 502 35 1 1198 1699 625237206 625236708 0.000000e+00 713
8 TraesCS3B01G408700 chr3A 87.866 478 44 10 467 937 625237840 625237370 1.400000e-152 549
9 TraesCS3B01G408700 chr3A 89.967 299 28 2 1 298 625238121 625237824 4.180000e-103 385
10 TraesCS3B01G408700 chr3A 87.251 251 29 2 2426 2676 442748924 442748677 1.570000e-72 283
11 TraesCS3B01G408700 chr3A 86.111 252 31 3 2426 2677 645944571 645944818 4.390000e-68 268
12 TraesCS3B01G408700 chr3A 87.124 233 30 0 2445 2677 728616345 728616113 5.680000e-67 265
13 TraesCS3B01G408700 chr3A 91.089 101 7 2 957 1055 625237292 625237192 4.650000e-28 135
14 TraesCS3B01G408700 chr6A 88.841 233 26 0 2445 2677 79292370 79292138 1.210000e-73 287
15 TraesCS3B01G408700 chr6A 94.118 136 8 0 330 465 554386265 554386130 9.720000e-50 207
16 TraesCS3B01G408700 chr5B 87.302 252 29 2 2426 2677 393837104 393837352 4.360000e-73 285
17 TraesCS3B01G408700 chr5B 96.063 127 5 0 339 465 345054177 345054303 9.720000e-50 207
18 TraesCS3B01G408700 chr5B 93.431 137 8 1 329 465 616648525 616648660 4.520000e-48 202
19 TraesCS3B01G408700 chr2B 86.905 252 30 2 2426 2677 794652725 794652477 2.030000e-71 279
20 TraesCS3B01G408700 chr4A 86.166 253 30 5 2426 2677 720162712 720162464 4.390000e-68 268
21 TraesCS3B01G408700 chr4A 74.531 373 63 20 1293 1640 702393780 702394145 1.670000e-27 134
22 TraesCS3B01G408700 chr1A 86.111 252 27 2 2426 2677 592073186 592073429 5.680000e-67 265
23 TraesCS3B01G408700 chr1A 93.431 137 9 0 336 472 547571808 547571944 1.260000e-48 204
24 TraesCS3B01G408700 chr7B 91.892 148 10 2 331 478 140609398 140609543 3.490000e-49 206
25 TraesCS3B01G408700 chr4B 93.525 139 8 1 328 466 13408953 13409090 3.490000e-49 206
26 TraesCS3B01G408700 chr5D 90.972 144 13 0 339 482 231736780 231736923 7.560000e-46 195
27 TraesCS3B01G408700 chr7D 75.315 397 66 19 1293 1664 28691507 28691896 7.670000e-36 161
28 TraesCS3B01G408700 chr7D 82.014 139 25 0 1526 1664 28669020 28669158 4.680000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G408700 chr3B 644303095 644305772 2677 True 4946.0 4946 100.0000 1 2678 1 chr3B.!!$R2 2677
1 TraesCS3B01G408700 chr3B 644271738 644272482 744 True 1020.0 1020 91.4210 957 1699 1 chr3B.!!$R1 742
2 TraesCS3B01G408700 chr3D 482198211 482199704 1493 True 839.0 1349 87.1495 1 1699 2 chr3D.!!$R1 1698
3 TraesCS3B01G408700 chr7A 30244992 30245609 617 False 756.0 756 88.6760 2049 2674 1 chr7A.!!$F1 625
4 TraesCS3B01G408700 chr3A 625236708 625238121 1413 True 445.5 713 90.3380 1 1699 4 chr3A.!!$R3 1698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 363 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 2063 0.03601 CCTGCCATTTCTCTGGTCGT 60.036 55.0 0.0 0.0 38.63 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 55 7.095940 GCCCGTAACATTAACCTTTTTCTTTTC 60.096 37.037 0.00 0.00 0.00 2.29
98 103 4.703897 TCTGTAAAGTTTGACCACCTCAG 58.296 43.478 0.00 0.00 0.00 3.35
112 118 1.574526 CCTCAGGCCCCCTCATTTCA 61.575 60.000 0.00 0.00 0.00 2.69
113 119 0.394899 CTCAGGCCCCCTCATTTCAC 60.395 60.000 0.00 0.00 0.00 3.18
147 153 7.625469 TGTATATTAGTCCCATGTTTGTGTGA 58.375 34.615 0.00 0.00 0.00 3.58
148 154 8.271458 TGTATATTAGTCCCATGTTTGTGTGAT 58.729 33.333 0.00 0.00 0.00 3.06
150 156 8.908786 ATATTAGTCCCATGTTTGTGTGATAG 57.091 34.615 0.00 0.00 0.00 2.08
161 167 2.334977 TGTGTGATAGTGGTTCCCAGT 58.665 47.619 0.00 0.00 40.67 4.00
189 195 5.609533 ACGGTACATTCTGTAAATAGCCT 57.390 39.130 0.00 0.00 34.21 4.58
202 208 7.972277 TCTGTAAATAGCCTAGACTTGTAAACG 59.028 37.037 0.00 0.00 0.00 3.60
262 268 3.891366 ACCAAGGTATGCATATTGAAGGC 59.109 43.478 17.77 1.51 0.00 4.35
275 281 6.660949 GCATATTGAAGGCCCACTATTTATCT 59.339 38.462 0.00 0.00 0.00 1.98
276 282 7.829211 GCATATTGAAGGCCCACTATTTATCTA 59.171 37.037 0.00 0.00 0.00 1.98
277 283 9.167311 CATATTGAAGGCCCACTATTTATCTAC 57.833 37.037 0.00 0.00 0.00 2.59
280 286 8.506196 TTGAAGGCCCACTATTTATCTACTAT 57.494 34.615 0.00 0.00 0.00 2.12
281 287 8.135382 TGAAGGCCCACTATTTATCTACTATC 57.865 38.462 0.00 0.00 0.00 2.08
282 288 7.956315 TGAAGGCCCACTATTTATCTACTATCT 59.044 37.037 0.00 0.00 0.00 1.98
283 289 7.726033 AGGCCCACTATTTATCTACTATCTG 57.274 40.000 0.00 0.00 0.00 2.90
284 290 7.249715 AGGCCCACTATTTATCTACTATCTGT 58.750 38.462 0.00 0.00 0.00 3.41
285 291 7.735321 AGGCCCACTATTTATCTACTATCTGTT 59.265 37.037 0.00 0.00 0.00 3.16
286 292 8.376270 GGCCCACTATTTATCTACTATCTGTTT 58.624 37.037 0.00 0.00 0.00 2.83
299 305 9.944376 TCTACTATCTGTTTATCAAACTTGCTT 57.056 29.630 3.68 0.00 41.90 3.91
300 306 9.979270 CTACTATCTGTTTATCAAACTTGCTTG 57.021 33.333 3.68 0.00 41.90 4.01
301 307 8.396272 ACTATCTGTTTATCAAACTTGCTTGT 57.604 30.769 3.68 0.00 41.90 3.16
302 308 8.507249 ACTATCTGTTTATCAAACTTGCTTGTC 58.493 33.333 3.68 0.00 41.90 3.18
303 309 6.691754 TCTGTTTATCAAACTTGCTTGTCA 57.308 33.333 3.68 0.00 41.90 3.58
304 310 6.494842 TCTGTTTATCAAACTTGCTTGTCAC 58.505 36.000 3.68 0.00 41.90 3.67
305 311 6.094742 TCTGTTTATCAAACTTGCTTGTCACA 59.905 34.615 3.68 0.00 41.90 3.58
306 312 6.033341 TGTTTATCAAACTTGCTTGTCACAC 58.967 36.000 3.68 0.00 41.90 3.82
307 313 6.127758 TGTTTATCAAACTTGCTTGTCACACT 60.128 34.615 3.68 0.00 41.90 3.55
308 314 4.989279 ATCAAACTTGCTTGTCACACTT 57.011 36.364 0.00 0.00 0.00 3.16
309 315 4.095410 TCAAACTTGCTTGTCACACTTG 57.905 40.909 0.00 0.00 0.00 3.16
310 316 2.566952 AACTTGCTTGTCACACTTGC 57.433 45.000 0.00 0.00 0.00 4.01
311 317 0.740737 ACTTGCTTGTCACACTTGCC 59.259 50.000 0.00 0.00 0.00 4.52
312 318 0.740149 CTTGCTTGTCACACTTGCCA 59.260 50.000 0.00 0.00 0.00 4.92
313 319 0.455410 TTGCTTGTCACACTTGCCAC 59.545 50.000 0.00 0.00 0.00 5.01
314 320 1.009675 GCTTGTCACACTTGCCACG 60.010 57.895 0.00 0.00 0.00 4.94
315 321 1.009675 CTTGTCACACTTGCCACGC 60.010 57.895 0.00 0.00 0.00 5.34
316 322 2.700334 CTTGTCACACTTGCCACGCG 62.700 60.000 3.53 3.53 0.00 6.01
317 323 2.964925 GTCACACTTGCCACGCGA 60.965 61.111 15.93 0.00 0.00 5.87
318 324 2.030412 TCACACTTGCCACGCGAT 59.970 55.556 15.93 0.00 0.00 4.58
319 325 1.596752 TCACACTTGCCACGCGATT 60.597 52.632 15.93 0.00 0.00 3.34
320 326 0.319986 TCACACTTGCCACGCGATTA 60.320 50.000 15.93 0.00 0.00 1.75
321 327 0.515127 CACACTTGCCACGCGATTAA 59.485 50.000 15.93 1.07 0.00 1.40
322 328 1.069568 CACACTTGCCACGCGATTAAA 60.070 47.619 15.93 0.51 0.00 1.52
323 329 1.196808 ACACTTGCCACGCGATTAAAG 59.803 47.619 15.93 13.56 0.00 1.85
324 330 0.802494 ACTTGCCACGCGATTAAAGG 59.198 50.000 15.93 5.59 0.00 3.11
325 331 0.523335 CTTGCCACGCGATTAAAGGC 60.523 55.000 15.93 15.99 45.41 4.35
326 332 1.928706 TTGCCACGCGATTAAAGGCC 61.929 55.000 15.93 0.00 44.60 5.19
327 333 3.107447 CCACGCGATTAAAGGCCC 58.893 61.111 15.93 0.00 0.00 5.80
328 334 1.747367 CCACGCGATTAAAGGCCCA 60.747 57.895 15.93 0.00 0.00 5.36
329 335 1.427819 CACGCGATTAAAGGCCCAC 59.572 57.895 15.93 0.00 0.00 4.61
330 336 1.024579 CACGCGATTAAAGGCCCACT 61.025 55.000 15.93 0.00 0.00 4.00
331 337 0.538118 ACGCGATTAAAGGCCCACTA 59.462 50.000 15.93 0.00 0.00 2.74
332 338 1.140252 ACGCGATTAAAGGCCCACTAT 59.860 47.619 15.93 0.00 0.00 2.12
333 339 2.218603 CGCGATTAAAGGCCCACTATT 58.781 47.619 0.00 0.00 0.00 1.73
334 340 2.616842 CGCGATTAAAGGCCCACTATTT 59.383 45.455 0.00 0.00 0.00 1.40
335 341 3.810941 CGCGATTAAAGGCCCACTATTTA 59.189 43.478 0.00 0.00 0.00 1.40
336 342 4.454504 CGCGATTAAAGGCCCACTATTTAT 59.545 41.667 0.00 0.00 0.00 1.40
337 343 5.390567 CGCGATTAAAGGCCCACTATTTATC 60.391 44.000 0.00 0.00 0.00 1.75
338 344 5.705905 GCGATTAAAGGCCCACTATTTATCT 59.294 40.000 0.00 0.00 0.00 1.98
339 345 6.877322 GCGATTAAAGGCCCACTATTTATCTA 59.123 38.462 0.00 0.00 0.00 1.98
340 346 7.148457 GCGATTAAAGGCCCACTATTTATCTAC 60.148 40.741 0.00 0.00 0.00 2.59
341 347 8.095169 CGATTAAAGGCCCACTATTTATCTACT 58.905 37.037 0.00 0.00 0.00 2.57
342 348 9.438228 GATTAAAGGCCCACTATTTATCTACTC 57.562 37.037 0.00 0.00 0.00 2.59
343 349 5.827326 AAGGCCCACTATTTATCTACTCC 57.173 43.478 0.00 0.00 0.00 3.85
344 350 4.168883 AGGCCCACTATTTATCTACTCCC 58.831 47.826 0.00 0.00 0.00 4.30
345 351 4.140423 AGGCCCACTATTTATCTACTCCCT 60.140 45.833 0.00 0.00 0.00 4.20
346 352 4.223255 GGCCCACTATTTATCTACTCCCTC 59.777 50.000 0.00 0.00 0.00 4.30
347 353 4.223255 GCCCACTATTTATCTACTCCCTCC 59.777 50.000 0.00 0.00 0.00 4.30
348 354 4.463186 CCCACTATTTATCTACTCCCTCCG 59.537 50.000 0.00 0.00 0.00 4.63
349 355 5.078256 CCACTATTTATCTACTCCCTCCGT 58.922 45.833 0.00 0.00 0.00 4.69
350 356 5.183522 CCACTATTTATCTACTCCCTCCGTC 59.816 48.000 0.00 0.00 0.00 4.79
351 357 5.183522 CACTATTTATCTACTCCCTCCGTCC 59.816 48.000 0.00 0.00 0.00 4.79
352 358 2.267174 TTATCTACTCCCTCCGTCCG 57.733 55.000 0.00 0.00 0.00 4.79
353 359 0.399454 TATCTACTCCCTCCGTCCGG 59.601 60.000 0.00 0.00 0.00 5.14
354 360 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
355 361 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
356 362 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
357 363 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
358 364 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
359 365 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
360 366 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
361 367 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
362 368 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
363 369 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
364 370 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
365 371 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
366 372 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
367 373 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
368 374 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
369 375 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
370 376 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
371 377 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
372 378 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
373 379 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
374 380 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
375 381 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
376 382 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
377 383 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
384 390 8.090214 ACTTGTCATCAAAATGGATAAAAGTGG 58.910 33.333 0.00 0.00 33.42 4.00
385 391 7.773489 TGTCATCAAAATGGATAAAAGTGGA 57.227 32.000 0.00 0.00 33.42 4.02
386 392 8.365060 TGTCATCAAAATGGATAAAAGTGGAT 57.635 30.769 0.00 0.00 33.42 3.41
387 393 8.252417 TGTCATCAAAATGGATAAAAGTGGATG 58.748 33.333 0.00 0.00 33.42 3.51
388 394 7.707893 GTCATCAAAATGGATAAAAGTGGATGG 59.292 37.037 0.00 0.00 33.42 3.51
389 395 7.618907 TCATCAAAATGGATAAAAGTGGATGGA 59.381 33.333 0.00 0.00 33.42 3.41
390 396 7.976414 TCAAAATGGATAAAAGTGGATGGAT 57.024 32.000 0.00 0.00 0.00 3.41
391 397 8.010733 TCAAAATGGATAAAAGTGGATGGATC 57.989 34.615 0.00 0.00 0.00 3.36
392 398 7.840716 TCAAAATGGATAAAAGTGGATGGATCT 59.159 33.333 0.00 0.00 0.00 2.75
393 399 9.135189 CAAAATGGATAAAAGTGGATGGATCTA 57.865 33.333 0.00 0.00 0.00 1.98
394 400 9.713684 AAAATGGATAAAAGTGGATGGATCTAA 57.286 29.630 0.00 0.00 0.00 2.10
395 401 9.713684 AAATGGATAAAAGTGGATGGATCTAAA 57.286 29.630 0.00 0.00 0.00 1.85
396 402 8.697507 ATGGATAAAAGTGGATGGATCTAAAC 57.302 34.615 0.00 0.00 0.00 2.01
397 403 6.765989 TGGATAAAAGTGGATGGATCTAAACG 59.234 38.462 0.00 0.00 0.00 3.60
398 404 6.766467 GGATAAAAGTGGATGGATCTAAACGT 59.234 38.462 0.00 0.00 0.00 3.99
399 405 7.929785 GGATAAAAGTGGATGGATCTAAACGTA 59.070 37.037 0.00 0.00 0.00 3.57
400 406 9.490379 GATAAAAGTGGATGGATCTAAACGTAT 57.510 33.333 0.00 0.00 0.00 3.06
401 407 9.847224 ATAAAAGTGGATGGATCTAAACGTATT 57.153 29.630 0.00 0.00 0.00 1.89
402 408 8.575649 AAAAGTGGATGGATCTAAACGTATTT 57.424 30.769 0.00 0.00 0.00 1.40
403 409 8.575649 AAAGTGGATGGATCTAAACGTATTTT 57.424 30.769 0.00 0.00 0.00 1.82
404 410 9.675464 AAAGTGGATGGATCTAAACGTATTTTA 57.325 29.630 0.00 0.00 0.00 1.52
405 411 8.888579 AGTGGATGGATCTAAACGTATTTTAG 57.111 34.615 0.00 0.00 45.78 1.85
406 412 8.483758 AGTGGATGGATCTAAACGTATTTTAGT 58.516 33.333 5.62 0.00 44.99 2.24
407 413 9.106070 GTGGATGGATCTAAACGTATTTTAGTT 57.894 33.333 5.62 0.00 44.99 2.24
408 414 9.321562 TGGATGGATCTAAACGTATTTTAGTTC 57.678 33.333 5.62 6.68 44.99 3.01
409 415 9.543783 GGATGGATCTAAACGTATTTTAGTTCT 57.456 33.333 12.77 0.35 44.99 3.01
456 462 8.804688 TTTTGATAACAAGTATTTTTGGACGG 57.195 30.769 0.00 0.00 37.32 4.79
457 463 7.747155 TTGATAACAAGTATTTTTGGACGGA 57.253 32.000 0.00 0.00 32.32 4.69
458 464 7.372451 TGATAACAAGTATTTTTGGACGGAG 57.628 36.000 0.00 0.00 32.32 4.63
459 465 6.373216 TGATAACAAGTATTTTTGGACGGAGG 59.627 38.462 0.00 0.00 32.32 4.30
460 466 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
461 467 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
462 468 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
463 469 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
480 486 7.339482 GGAGGGAGTATCTGTTTATCAAACTT 58.661 38.462 3.68 0.00 41.90 2.66
483 489 6.599638 GGGAGTATCTGTTTATCAAACTTGCT 59.400 38.462 3.68 0.00 41.90 3.91
505 511 2.076863 GGATTCGAGAGGGTGTGTTTG 58.923 52.381 0.00 0.00 0.00 2.93
507 513 2.702592 TTCGAGAGGGTGTGTTTGTT 57.297 45.000 0.00 0.00 0.00 2.83
570 577 1.672356 CACCCCACACAGTAGCAGC 60.672 63.158 0.00 0.00 0.00 5.25
572 579 3.121030 CCCACACAGTAGCAGCGC 61.121 66.667 0.00 0.00 0.00 5.92
595 602 6.261118 GCAAACTAATTATCCAGTCAGCAAG 58.739 40.000 0.00 0.00 0.00 4.01
603 621 0.886490 CCAGTCAGCAAGCTTCGGTT 60.886 55.000 0.00 0.00 0.00 4.44
615 633 0.445436 CTTCGGTTGCTGCATCTCAC 59.555 55.000 1.84 0.00 0.00 3.51
628 646 4.026052 TGCATCTCACACTCTGATTCCTA 58.974 43.478 0.00 0.00 0.00 2.94
629 647 4.652881 TGCATCTCACACTCTGATTCCTAT 59.347 41.667 0.00 0.00 0.00 2.57
631 649 5.695816 GCATCTCACACTCTGATTCCTATTC 59.304 44.000 0.00 0.00 0.00 1.75
632 650 5.860941 TCTCACACTCTGATTCCTATTCC 57.139 43.478 0.00 0.00 0.00 3.01
633 651 5.523588 TCTCACACTCTGATTCCTATTCCT 58.476 41.667 0.00 0.00 0.00 3.36
634 652 5.362143 TCTCACACTCTGATTCCTATTCCTG 59.638 44.000 0.00 0.00 0.00 3.86
635 653 5.272402 TCACACTCTGATTCCTATTCCTGA 58.728 41.667 0.00 0.00 0.00 3.86
636 654 5.901853 TCACACTCTGATTCCTATTCCTGAT 59.098 40.000 0.00 0.00 0.00 2.90
637 655 5.990386 CACACTCTGATTCCTATTCCTGATG 59.010 44.000 0.00 0.00 0.00 3.07
638 656 5.664908 ACACTCTGATTCCTATTCCTGATGT 59.335 40.000 0.00 0.00 0.00 3.06
664 682 2.290367 CACTTGTCGTTGCTCCATTTCA 59.710 45.455 0.00 0.00 0.00 2.69
666 684 3.189287 ACTTGTCGTTGCTCCATTTCATC 59.811 43.478 0.00 0.00 0.00 2.92
670 688 1.202065 CGTTGCTCCATTTCATCCACG 60.202 52.381 0.00 0.00 0.00 4.94
706 724 1.477295 GTAGTTGGGCTAGACTTCGCT 59.523 52.381 0.00 0.00 0.00 4.93
708 726 1.079127 TTGGGCTAGACTTCGCTGC 60.079 57.895 0.00 0.00 0.00 5.25
710 728 2.182030 GGCTAGACTTCGCTGCGT 59.818 61.111 22.48 1.98 0.00 5.24
788 823 0.240145 CTCCTGTCGTCGTGCACTTA 59.760 55.000 16.19 0.00 0.00 2.24
853 888 0.109781 CTTGCCATACGTGTTGCACC 60.110 55.000 10.62 0.00 32.63 5.01
905 945 3.898123 ACAGCATCGTATCACCCTTCTAT 59.102 43.478 0.00 0.00 0.00 1.98
918 958 2.032204 CCCTTCTATAACGTCGTCCTCG 60.032 54.545 0.00 0.00 38.55 4.63
995 1107 1.300233 CGTCGCCTTATCTGCCTCC 60.300 63.158 0.00 0.00 0.00 4.30
1443 1561 4.176752 GACCGGATCACCCTGCCC 62.177 72.222 9.46 0.00 0.00 5.36
1554 1672 3.371063 GACCTGTGGCTCGACGGA 61.371 66.667 0.00 0.00 0.00 4.69
1578 1696 3.443045 CGGTACAGGTACGGCGGT 61.443 66.667 13.24 1.39 36.94 5.68
1699 1817 2.278661 GTCGGTCGGGAATCTCGC 60.279 66.667 0.00 0.00 0.00 5.03
1700 1818 2.439701 TCGGTCGGGAATCTCGCT 60.440 61.111 0.00 0.00 0.00 4.93
1701 1819 2.050350 TCGGTCGGGAATCTCGCTT 61.050 57.895 0.00 0.00 0.00 4.68
1702 1820 1.153628 CGGTCGGGAATCTCGCTTT 60.154 57.895 0.00 0.00 0.00 3.51
1703 1821 0.739813 CGGTCGGGAATCTCGCTTTT 60.740 55.000 0.00 0.00 0.00 2.27
1704 1822 1.450025 GGTCGGGAATCTCGCTTTTT 58.550 50.000 0.00 0.00 0.00 1.94
1725 1843 3.974871 TTTAGGGAAAAATATCGCCGC 57.025 42.857 0.00 0.00 33.04 6.53
1726 1844 2.922740 TAGGGAAAAATATCGCCGCT 57.077 45.000 0.00 0.00 33.04 5.52
1727 1845 2.052782 AGGGAAAAATATCGCCGCTT 57.947 45.000 0.00 0.00 33.04 4.68
1728 1846 2.375146 AGGGAAAAATATCGCCGCTTT 58.625 42.857 0.00 0.00 33.04 3.51
1729 1847 3.547746 AGGGAAAAATATCGCCGCTTTA 58.452 40.909 0.00 0.00 33.04 1.85
1730 1848 4.142038 AGGGAAAAATATCGCCGCTTTAT 58.858 39.130 0.00 0.00 33.04 1.40
1731 1849 4.583073 AGGGAAAAATATCGCCGCTTTATT 59.417 37.500 0.00 0.00 33.04 1.40
1732 1850 5.068591 AGGGAAAAATATCGCCGCTTTATTT 59.931 36.000 0.00 0.00 33.04 1.40
1733 1851 6.263617 AGGGAAAAATATCGCCGCTTTATTTA 59.736 34.615 7.46 0.00 33.04 1.40
1734 1852 7.039993 AGGGAAAAATATCGCCGCTTTATTTAT 60.040 33.333 7.46 0.00 33.04 1.40
1735 1853 7.272731 GGGAAAAATATCGCCGCTTTATTTATC 59.727 37.037 7.46 3.02 0.00 1.75
1736 1854 7.272731 GGAAAAATATCGCCGCTTTATTTATCC 59.727 37.037 7.46 0.00 0.00 2.59
1737 1855 5.464965 AATATCGCCGCTTTATTTATCCG 57.535 39.130 0.00 0.00 0.00 4.18
1738 1856 2.512485 TCGCCGCTTTATTTATCCGA 57.488 45.000 0.00 0.00 0.00 4.55
1739 1857 2.400399 TCGCCGCTTTATTTATCCGAG 58.600 47.619 0.00 0.00 0.00 4.63
1740 1858 2.034939 TCGCCGCTTTATTTATCCGAGA 59.965 45.455 0.00 0.00 0.00 4.04
1741 1859 2.993899 CGCCGCTTTATTTATCCGAGAT 59.006 45.455 0.00 0.00 0.00 2.75
1742 1860 3.432252 CGCCGCTTTATTTATCCGAGATT 59.568 43.478 0.00 0.00 0.00 2.40
1743 1861 4.624024 CGCCGCTTTATTTATCCGAGATTA 59.376 41.667 0.00 0.00 0.00 1.75
1744 1862 5.444218 CGCCGCTTTATTTATCCGAGATTAC 60.444 44.000 0.00 0.00 0.00 1.89
1745 1863 5.407387 GCCGCTTTATTTATCCGAGATTACA 59.593 40.000 0.00 0.00 0.00 2.41
1746 1864 6.092259 GCCGCTTTATTTATCCGAGATTACAT 59.908 38.462 0.00 0.00 0.00 2.29
1747 1865 7.674240 GCCGCTTTATTTATCCGAGATTACATC 60.674 40.741 0.00 0.00 0.00 3.06
1748 1866 7.330946 CCGCTTTATTTATCCGAGATTACATCA 59.669 37.037 0.00 0.00 0.00 3.07
1749 1867 8.376203 CGCTTTATTTATCCGAGATTACATCAG 58.624 37.037 0.00 0.00 0.00 2.90
1750 1868 8.171840 GCTTTATTTATCCGAGATTACATCAGC 58.828 37.037 0.00 0.00 0.00 4.26
1751 1869 9.208022 CTTTATTTATCCGAGATTACATCAGCA 57.792 33.333 0.00 0.00 0.00 4.41
1752 1870 9.554395 TTTATTTATCCGAGATTACATCAGCAA 57.446 29.630 0.00 0.00 0.00 3.91
1753 1871 6.844696 TTTATCCGAGATTACATCAGCAAC 57.155 37.500 0.00 0.00 0.00 4.17
1754 1872 3.885724 TCCGAGATTACATCAGCAACA 57.114 42.857 0.00 0.00 0.00 3.33
1755 1873 4.200838 TCCGAGATTACATCAGCAACAA 57.799 40.909 0.00 0.00 0.00 2.83
1756 1874 4.574892 TCCGAGATTACATCAGCAACAAA 58.425 39.130 0.00 0.00 0.00 2.83
1757 1875 4.631377 TCCGAGATTACATCAGCAACAAAG 59.369 41.667 0.00 0.00 0.00 2.77
1758 1876 4.393062 CCGAGATTACATCAGCAACAAAGT 59.607 41.667 0.00 0.00 0.00 2.66
1759 1877 5.446473 CCGAGATTACATCAGCAACAAAGTC 60.446 44.000 0.00 0.00 0.00 3.01
1760 1878 5.446473 CGAGATTACATCAGCAACAAAGTCC 60.446 44.000 0.00 0.00 0.00 3.85
1761 1879 4.393062 AGATTACATCAGCAACAAAGTCCG 59.607 41.667 0.00 0.00 0.00 4.79
1762 1880 1.238439 ACATCAGCAACAAAGTCCGG 58.762 50.000 0.00 0.00 0.00 5.14
1763 1881 0.523072 CATCAGCAACAAAGTCCGGG 59.477 55.000 0.00 0.00 0.00 5.73
1764 1882 0.609131 ATCAGCAACAAAGTCCGGGG 60.609 55.000 0.00 0.00 0.00 5.73
1765 1883 1.228124 CAGCAACAAAGTCCGGGGA 60.228 57.895 0.00 0.00 0.00 4.81
1766 1884 0.821711 CAGCAACAAAGTCCGGGGAA 60.822 55.000 0.00 0.00 0.00 3.97
1767 1885 0.537371 AGCAACAAAGTCCGGGGAAG 60.537 55.000 0.00 0.00 0.00 3.46
1768 1886 1.956802 CAACAAAGTCCGGGGAAGC 59.043 57.895 0.00 0.00 0.00 3.86
1769 1887 1.228459 AACAAAGTCCGGGGAAGCC 60.228 57.895 0.00 0.00 0.00 4.35
1770 1888 2.361230 CAAAGTCCGGGGAAGCCC 60.361 66.667 0.00 0.00 44.51 5.19
1780 1898 4.097218 GGAAGCCCCTGACCAAAC 57.903 61.111 0.00 0.00 0.00 2.93
1781 1899 1.606601 GGAAGCCCCTGACCAAACC 60.607 63.158 0.00 0.00 0.00 3.27
1782 1900 1.460699 GAAGCCCCTGACCAAACCT 59.539 57.895 0.00 0.00 0.00 3.50
1783 1901 0.178961 GAAGCCCCTGACCAAACCTT 60.179 55.000 0.00 0.00 0.00 3.50
1784 1902 1.074889 GAAGCCCCTGACCAAACCTTA 59.925 52.381 0.00 0.00 0.00 2.69
1785 1903 0.404426 AGCCCCTGACCAAACCTTAC 59.596 55.000 0.00 0.00 0.00 2.34
1786 1904 0.111639 GCCCCTGACCAAACCTTACA 59.888 55.000 0.00 0.00 0.00 2.41
1787 1905 1.479757 GCCCCTGACCAAACCTTACAA 60.480 52.381 0.00 0.00 0.00 2.41
1788 1906 2.952116 CCCCTGACCAAACCTTACAAA 58.048 47.619 0.00 0.00 0.00 2.83
1789 1907 3.301274 CCCCTGACCAAACCTTACAAAA 58.699 45.455 0.00 0.00 0.00 2.44
1790 1908 3.901222 CCCCTGACCAAACCTTACAAAAT 59.099 43.478 0.00 0.00 0.00 1.82
1791 1909 4.346709 CCCCTGACCAAACCTTACAAAATT 59.653 41.667 0.00 0.00 0.00 1.82
1792 1910 5.510690 CCCCTGACCAAACCTTACAAAATTC 60.511 44.000 0.00 0.00 0.00 2.17
1793 1911 5.069781 CCCTGACCAAACCTTACAAAATTCA 59.930 40.000 0.00 0.00 0.00 2.57
1794 1912 6.239572 CCCTGACCAAACCTTACAAAATTCAT 60.240 38.462 0.00 0.00 0.00 2.57
1795 1913 6.868339 CCTGACCAAACCTTACAAAATTCATC 59.132 38.462 0.00 0.00 0.00 2.92
1796 1914 7.255942 CCTGACCAAACCTTACAAAATTCATCT 60.256 37.037 0.00 0.00 0.00 2.90
1797 1915 7.657336 TGACCAAACCTTACAAAATTCATCTC 58.343 34.615 0.00 0.00 0.00 2.75
1798 1916 7.286546 TGACCAAACCTTACAAAATTCATCTCA 59.713 33.333 0.00 0.00 0.00 3.27
1799 1917 8.017418 ACCAAACCTTACAAAATTCATCTCAA 57.983 30.769 0.00 0.00 0.00 3.02
1800 1918 8.482128 ACCAAACCTTACAAAATTCATCTCAAA 58.518 29.630 0.00 0.00 0.00 2.69
1801 1919 8.764287 CCAAACCTTACAAAATTCATCTCAAAC 58.236 33.333 0.00 0.00 0.00 2.93
1802 1920 9.311916 CAAACCTTACAAAATTCATCTCAAACA 57.688 29.630 0.00 0.00 0.00 2.83
1814 1932 9.453572 AATTCATCTCAAACATTTACTCTAGCA 57.546 29.630 0.00 0.00 0.00 3.49
1815 1933 8.846943 TTCATCTCAAACATTTACTCTAGCAA 57.153 30.769 0.00 0.00 0.00 3.91
1816 1934 8.846943 TCATCTCAAACATTTACTCTAGCAAA 57.153 30.769 0.00 0.00 0.00 3.68
1817 1935 9.453572 TCATCTCAAACATTTACTCTAGCAAAT 57.546 29.630 0.00 0.00 0.00 2.32
1845 1963 1.668419 AGCAATATCGGCTGAACACC 58.332 50.000 0.00 0.00 40.80 4.16
1852 1970 4.713946 GGCTGAACACCGATCCAA 57.286 55.556 0.00 0.00 0.00 3.53
1853 1971 2.941210 GGCTGAACACCGATCCAAA 58.059 52.632 0.00 0.00 0.00 3.28
1854 1972 1.243902 GGCTGAACACCGATCCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
1855 1973 1.818674 GGCTGAACACCGATCCAAAAT 59.181 47.619 0.00 0.00 0.00 1.82
1856 1974 3.013921 GGCTGAACACCGATCCAAAATA 58.986 45.455 0.00 0.00 0.00 1.40
1857 1975 3.181500 GGCTGAACACCGATCCAAAATAC 60.181 47.826 0.00 0.00 0.00 1.89
1858 1976 3.689649 GCTGAACACCGATCCAAAATACT 59.310 43.478 0.00 0.00 0.00 2.12
1859 1977 4.156008 GCTGAACACCGATCCAAAATACTT 59.844 41.667 0.00 0.00 0.00 2.24
1860 1978 5.335661 GCTGAACACCGATCCAAAATACTTT 60.336 40.000 0.00 0.00 0.00 2.66
1861 1979 6.128117 GCTGAACACCGATCCAAAATACTTTA 60.128 38.462 0.00 0.00 0.00 1.85
1862 1980 7.574217 GCTGAACACCGATCCAAAATACTTTAA 60.574 37.037 0.00 0.00 0.00 1.52
1863 1981 8.167605 TGAACACCGATCCAAAATACTTTAAA 57.832 30.769 0.00 0.00 0.00 1.52
1864 1982 8.630917 TGAACACCGATCCAAAATACTTTAAAA 58.369 29.630 0.00 0.00 0.00 1.52
1865 1983 8.806177 AACACCGATCCAAAATACTTTAAAAC 57.194 30.769 0.00 0.00 0.00 2.43
1866 1984 7.372714 ACACCGATCCAAAATACTTTAAAACC 58.627 34.615 0.00 0.00 0.00 3.27
1867 1985 7.014422 ACACCGATCCAAAATACTTTAAAACCA 59.986 33.333 0.00 0.00 0.00 3.67
1868 1986 8.032451 CACCGATCCAAAATACTTTAAAACCAT 58.968 33.333 0.00 0.00 0.00 3.55
1869 1987 8.032451 ACCGATCCAAAATACTTTAAAACCATG 58.968 33.333 0.00 0.00 0.00 3.66
1870 1988 7.010091 CCGATCCAAAATACTTTAAAACCATGC 59.990 37.037 0.00 0.00 0.00 4.06
1871 1989 7.759433 CGATCCAAAATACTTTAAAACCATGCT 59.241 33.333 0.00 0.00 0.00 3.79
1917 2035 7.497925 AAAAACACTTTAAAACCTGCAAACA 57.502 28.000 0.00 0.00 0.00 2.83
1918 2036 7.497925 AAAACACTTTAAAACCTGCAAACAA 57.502 28.000 0.00 0.00 0.00 2.83
1919 2037 7.680442 AAACACTTTAAAACCTGCAAACAAT 57.320 28.000 0.00 0.00 0.00 2.71
1920 2038 7.680442 AACACTTTAAAACCTGCAAACAATT 57.320 28.000 0.00 0.00 0.00 2.32
1921 2039 7.071014 ACACTTTAAAACCTGCAAACAATTG 57.929 32.000 3.24 3.24 39.65 2.32
1938 2056 8.714179 CAAACAATTGCAACATCATCTTTATGT 58.286 29.630 0.00 0.00 39.22 2.29
1939 2057 8.470040 AACAATTGCAACATCATCTTTATGTC 57.530 30.769 0.00 0.00 36.56 3.06
1940 2058 6.748658 ACAATTGCAACATCATCTTTATGTCG 59.251 34.615 0.00 0.00 36.56 4.35
1941 2059 6.682423 ATTGCAACATCATCTTTATGTCGA 57.318 33.333 0.00 0.00 36.56 4.20
1942 2060 5.469373 TGCAACATCATCTTTATGTCGAC 57.531 39.130 9.11 9.11 36.56 4.20
1943 2061 4.032786 TGCAACATCATCTTTATGTCGACG 59.967 41.667 11.62 0.00 36.56 5.12
1944 2062 4.508971 CAACATCATCTTTATGTCGACGC 58.491 43.478 11.62 0.00 36.56 5.19
1945 2063 3.780902 ACATCATCTTTATGTCGACGCA 58.219 40.909 11.62 0.00 32.02 5.24
1946 2064 3.551890 ACATCATCTTTATGTCGACGCAC 59.448 43.478 11.62 0.00 32.02 5.34
1947 2065 2.182014 TCATCTTTATGTCGACGCACG 58.818 47.619 11.62 0.00 44.09 5.34
1955 2073 2.667199 TCGACGCACGACCAGAGA 60.667 61.111 0.00 0.00 46.45 3.10
1956 2074 2.254350 CGACGCACGACCAGAGAA 59.746 61.111 0.00 0.00 45.77 2.87
1957 2075 1.371267 CGACGCACGACCAGAGAAA 60.371 57.895 0.00 0.00 45.77 2.52
1958 2076 0.732880 CGACGCACGACCAGAGAAAT 60.733 55.000 0.00 0.00 45.77 2.17
1959 2077 0.716108 GACGCACGACCAGAGAAATG 59.284 55.000 0.00 0.00 0.00 2.32
1960 2078 0.670546 ACGCACGACCAGAGAAATGG 60.671 55.000 0.00 0.00 46.47 3.16
1961 2079 1.796796 GCACGACCAGAGAAATGGC 59.203 57.895 0.00 0.00 44.80 4.40
1962 2080 0.955428 GCACGACCAGAGAAATGGCA 60.955 55.000 0.00 0.00 44.80 4.92
1963 2081 1.081892 CACGACCAGAGAAATGGCAG 58.918 55.000 0.00 0.00 44.80 4.85
1964 2082 0.036010 ACGACCAGAGAAATGGCAGG 60.036 55.000 0.00 0.00 44.80 4.85
1965 2083 1.372087 CGACCAGAGAAATGGCAGGC 61.372 60.000 0.00 0.00 44.80 4.85
1966 2084 1.000396 ACCAGAGAAATGGCAGGCC 60.000 57.895 2.62 2.62 44.80 5.19
1967 2085 1.755783 CCAGAGAAATGGCAGGCCC 60.756 63.158 8.02 0.00 32.48 5.80
1968 2086 1.755783 CAGAGAAATGGCAGGCCCC 60.756 63.158 8.02 0.00 34.56 5.80
1969 2087 2.442830 GAGAAATGGCAGGCCCCC 60.443 66.667 8.02 0.00 34.56 5.40
1970 2088 4.447342 AGAAATGGCAGGCCCCCG 62.447 66.667 8.02 0.00 34.56 5.73
1983 2101 3.584052 CCCCGCGTCGTCTCCTAG 61.584 72.222 4.92 0.00 0.00 3.02
1984 2102 2.513204 CCCGCGTCGTCTCCTAGA 60.513 66.667 4.92 0.00 0.00 2.43
1985 2103 2.535788 CCCGCGTCGTCTCCTAGAG 61.536 68.421 4.92 0.00 0.00 2.43
1986 2104 2.535788 CCGCGTCGTCTCCTAGAGG 61.536 68.421 4.92 0.00 0.00 3.69
1987 2105 2.716864 GCGTCGTCTCCTAGAGGC 59.283 66.667 0.00 0.00 40.29 4.70
2011 2129 2.124024 GGCGGAACCCCAATACCC 60.124 66.667 0.00 0.00 0.00 3.69
2012 2130 2.124024 GCGGAACCCCAATACCCC 60.124 66.667 0.00 0.00 0.00 4.95
2013 2131 2.599032 CGGAACCCCAATACCCCC 59.401 66.667 0.00 0.00 0.00 5.40
2014 2132 2.599032 GGAACCCCAATACCCCCG 59.401 66.667 0.00 0.00 0.00 5.73
2015 2133 2.311070 GGAACCCCAATACCCCCGT 61.311 63.158 0.00 0.00 0.00 5.28
2016 2134 1.225426 GAACCCCAATACCCCCGTC 59.775 63.158 0.00 0.00 0.00 4.79
2017 2135 2.598098 GAACCCCAATACCCCCGTCG 62.598 65.000 0.00 0.00 0.00 5.12
2018 2136 3.085296 CCCCAATACCCCCGTCGT 61.085 66.667 0.00 0.00 0.00 4.34
2019 2137 2.502577 CCCAATACCCCCGTCGTC 59.497 66.667 0.00 0.00 0.00 4.20
2020 2138 2.360767 CCCAATACCCCCGTCGTCA 61.361 63.158 0.00 0.00 0.00 4.35
2021 2139 1.143183 CCAATACCCCCGTCGTCAG 59.857 63.158 0.00 0.00 0.00 3.51
2022 2140 1.324740 CCAATACCCCCGTCGTCAGA 61.325 60.000 0.00 0.00 0.00 3.27
2023 2141 0.179119 CAATACCCCCGTCGTCAGAC 60.179 60.000 0.00 0.00 43.72 3.51
2024 2142 1.325476 AATACCCCCGTCGTCAGACC 61.325 60.000 0.00 0.00 44.28 3.85
2025 2143 3.944250 TACCCCCGTCGTCAGACCC 62.944 68.421 0.00 0.00 44.28 4.46
2029 2147 3.450115 CCGTCGTCAGACCCCCTC 61.450 72.222 0.00 0.00 44.28 4.30
2030 2148 3.450115 CGTCGTCAGACCCCCTCC 61.450 72.222 0.00 0.00 44.28 4.30
2031 2149 2.037527 GTCGTCAGACCCCCTCCT 59.962 66.667 0.00 0.00 41.41 3.69
2032 2150 2.053277 GTCGTCAGACCCCCTCCTC 61.053 68.421 0.00 0.00 41.41 3.71
2033 2151 2.760385 CGTCAGACCCCCTCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
2034 2152 2.450243 GTCAGACCCCCTCCTCCA 59.550 66.667 0.00 0.00 0.00 3.86
2035 2153 1.990614 GTCAGACCCCCTCCTCCAC 60.991 68.421 0.00 0.00 0.00 4.02
2036 2154 2.689034 CAGACCCCCTCCTCCACC 60.689 72.222 0.00 0.00 0.00 4.61
2037 2155 3.208592 AGACCCCCTCCTCCACCA 61.209 66.667 0.00 0.00 0.00 4.17
2038 2156 3.009714 GACCCCCTCCTCCACCAC 61.010 72.222 0.00 0.00 0.00 4.16
2039 2157 4.677151 ACCCCCTCCTCCACCACC 62.677 72.222 0.00 0.00 0.00 4.61
2040 2158 4.354943 CCCCCTCCTCCACCACCT 62.355 72.222 0.00 0.00 0.00 4.00
2041 2159 2.689034 CCCCTCCTCCACCACCTC 60.689 72.222 0.00 0.00 0.00 3.85
2042 2160 2.452114 CCCTCCTCCACCACCTCT 59.548 66.667 0.00 0.00 0.00 3.69
2043 2161 1.687493 CCCTCCTCCACCACCTCTC 60.687 68.421 0.00 0.00 0.00 3.20
2044 2162 1.687493 CCTCCTCCACCACCTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
2045 2163 1.390125 CTCCTCCACCACCTCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
2046 2164 0.686112 CTCCTCCACCACCTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
2047 2165 2.055042 CCTCCACCACCTCTCCTCG 61.055 68.421 0.00 0.00 0.00 4.63
2050 2168 4.135153 CACCACCTCTCCTCGCCG 62.135 72.222 0.00 0.00 0.00 6.46
2069 2187 4.764336 CGCCGGCTAACGTCGTCA 62.764 66.667 26.68 0.00 39.36 4.35
2084 2202 3.000819 TCAGGTGTAGCCCCCGTG 61.001 66.667 0.00 0.00 38.26 4.94
2115 2233 3.330720 CTTCCGCCCCTCCCACTT 61.331 66.667 0.00 0.00 0.00 3.16
2127 2245 2.671070 CCACTTCCATGGCGGTCT 59.329 61.111 6.96 0.00 35.57 3.85
2128 2246 1.450312 CCACTTCCATGGCGGTCTC 60.450 63.158 6.96 0.00 35.57 3.36
2145 2263 1.848932 CTCCGTCGTCGTCTGGTGAA 61.849 60.000 0.71 0.00 35.01 3.18
2157 2275 3.334054 GGTGAAGCTCCCCTGGCT 61.334 66.667 0.00 0.00 42.31 4.75
2177 2295 2.432628 CGCTCCTTTCCGCGTCTT 60.433 61.111 4.92 0.00 44.01 3.01
2191 2309 3.706373 TCTTCCCAGGCGCCTCAC 61.706 66.667 30.29 0.00 0.00 3.51
2283 2401 2.107141 GCGGCTTGATCTACGCCT 59.893 61.111 15.21 0.00 45.70 5.52
2301 2419 4.351054 CGGTGCCTCCCCTTGCTT 62.351 66.667 0.00 0.00 0.00 3.91
2307 2425 0.750911 GCCTCCCCTTGCTTGATCTG 60.751 60.000 0.00 0.00 0.00 2.90
2315 2433 0.036483 TTGCTTGATCTGTGCGGCTA 60.036 50.000 0.00 0.00 0.00 3.93
2410 2528 2.242926 CCGATCTCTGGCCAGATAAGA 58.757 52.381 35.11 27.69 36.76 2.10
2417 2535 0.988832 TGGCCAGATAAGACGGGTTT 59.011 50.000 0.00 0.00 0.00 3.27
2443 2561 1.990060 CCCCACCACTCGTCCATCT 60.990 63.158 0.00 0.00 0.00 2.90
2470 2588 2.997897 GGTCTCCTGGTGGTCGCT 60.998 66.667 0.00 0.00 34.23 4.93
2482 2600 1.301716 GGTCGCTCTTCTGCACCAA 60.302 57.895 0.00 0.00 35.63 3.67
2486 2604 0.095935 CGCTCTTCTGCACCAAATCG 59.904 55.000 0.00 0.00 0.00 3.34
2489 2607 0.960364 TCTTCTGCACCAAATCGGGC 60.960 55.000 0.00 0.00 40.22 6.13
2515 2633 4.241555 ATGGCCTCATCGACCGGC 62.242 66.667 3.32 11.80 43.03 6.13
2518 2636 4.593864 GCCTCATCGACCGGCTCC 62.594 72.222 0.00 0.00 40.62 4.70
2520 2638 3.147595 CTCATCGACCGGCTCCCA 61.148 66.667 0.00 0.00 0.00 4.37
2542 2660 1.064946 CTCTCTAGTTGCGGCCTCG 59.935 63.158 0.00 0.00 39.81 4.63
2587 2705 4.389576 CCTTGTTCTGCGTGCGGC 62.390 66.667 0.00 0.00 43.96 6.53
2604 2722 2.186826 GCGGCCCGATATGTTGCTT 61.187 57.895 7.68 0.00 0.00 3.91
2614 2732 4.346129 CGATATGTTGCTTCTTCTTTGGC 58.654 43.478 0.00 0.00 0.00 4.52
2620 2738 1.308783 GCTTCTTCTTTGGCCCTCCG 61.309 60.000 0.00 0.00 34.14 4.63
2626 2744 1.153349 CTTTGGCCCTCCGTAGCTC 60.153 63.158 0.00 0.00 34.14 4.09
2632 2750 2.024871 CCTCCGTAGCTCGCTTCG 59.975 66.667 10.40 10.40 38.35 3.79
2653 2771 1.227793 GCTCATGGCTGCCTAGACC 60.228 63.158 21.03 5.45 38.06 3.85
2674 2792 2.359478 GGGCTACGGTGGTGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
2675 2793 2.359478 GGCTACGGTGGTGGTTGG 60.359 66.667 0.00 0.00 0.00 3.77
2676 2794 3.053896 GCTACGGTGGTGGTTGGC 61.054 66.667 0.00 0.00 0.00 4.52
2677 2795 2.747686 CTACGGTGGTGGTTGGCT 59.252 61.111 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 77 6.262273 TGAGGTGGTCAAACTTTACAGATTTC 59.738 38.462 0.00 0.00 29.64 2.17
98 103 2.046285 CACGTGAAATGAGGGGGCC 61.046 63.158 10.90 0.00 0.00 5.80
112 118 7.949690 TGGGACTAATATACATATAGCACGT 57.050 36.000 0.00 0.00 0.00 4.49
113 119 8.414003 ACATGGGACTAATATACATATAGCACG 58.586 37.037 0.00 0.00 0.00 5.34
189 195 9.146984 CATGTCTTATTTCCGTTTACAAGTCTA 57.853 33.333 0.00 0.00 0.00 2.59
275 281 9.502091 ACAAGCAAGTTTGATAAACAGATAGTA 57.498 29.630 3.63 0.00 43.79 1.82
276 282 8.396272 ACAAGCAAGTTTGATAAACAGATAGT 57.604 30.769 3.63 0.00 43.79 2.12
277 283 8.506437 TGACAAGCAAGTTTGATAAACAGATAG 58.494 33.333 3.63 0.00 43.79 2.08
280 286 6.094742 TGTGACAAGCAAGTTTGATAAACAGA 59.905 34.615 3.63 0.00 43.79 3.41
281 287 6.197096 GTGTGACAAGCAAGTTTGATAAACAG 59.803 38.462 3.63 1.11 43.79 3.16
282 288 6.033341 GTGTGACAAGCAAGTTTGATAAACA 58.967 36.000 3.63 0.58 43.79 2.83
283 289 6.265577 AGTGTGACAAGCAAGTTTGATAAAC 58.734 36.000 3.63 0.00 41.69 2.01
284 290 6.449635 AGTGTGACAAGCAAGTTTGATAAA 57.550 33.333 3.63 0.00 0.00 1.40
285 291 6.264832 CAAGTGTGACAAGCAAGTTTGATAA 58.735 36.000 3.63 0.00 0.00 1.75
286 292 5.733091 GCAAGTGTGACAAGCAAGTTTGATA 60.733 40.000 3.63 0.00 0.00 2.15
287 293 4.675510 CAAGTGTGACAAGCAAGTTTGAT 58.324 39.130 3.63 0.00 0.00 2.57
288 294 3.673052 GCAAGTGTGACAAGCAAGTTTGA 60.673 43.478 3.63 0.00 0.00 2.69
289 295 2.599973 GCAAGTGTGACAAGCAAGTTTG 59.400 45.455 0.00 0.00 0.00 2.93
290 296 2.417243 GGCAAGTGTGACAAGCAAGTTT 60.417 45.455 7.94 0.00 30.49 2.66
291 297 1.134946 GGCAAGTGTGACAAGCAAGTT 59.865 47.619 7.94 0.00 30.49 2.66
292 298 0.740737 GGCAAGTGTGACAAGCAAGT 59.259 50.000 7.94 0.00 30.49 3.16
293 299 0.740149 TGGCAAGTGTGACAAGCAAG 59.260 50.000 7.94 0.00 40.96 4.01
294 300 2.879372 TGGCAAGTGTGACAAGCAA 58.121 47.368 7.94 0.00 40.96 3.91
295 301 4.653893 TGGCAAGTGTGACAAGCA 57.346 50.000 7.94 0.00 40.96 3.91
299 305 2.987282 ATCGCGTGGCAAGTGTGACA 62.987 55.000 13.45 0.00 41.98 3.58
300 306 1.841663 AATCGCGTGGCAAGTGTGAC 61.842 55.000 13.45 0.00 0.00 3.67
301 307 0.319986 TAATCGCGTGGCAAGTGTGA 60.320 50.000 13.45 7.51 0.00 3.58
302 308 0.515127 TTAATCGCGTGGCAAGTGTG 59.485 50.000 13.45 2.11 0.00 3.82
303 309 1.196808 CTTTAATCGCGTGGCAAGTGT 59.803 47.619 13.45 0.00 0.00 3.55
304 310 1.465689 CCTTTAATCGCGTGGCAAGTG 60.466 52.381 5.77 7.70 0.00 3.16
305 311 0.802494 CCTTTAATCGCGTGGCAAGT 59.198 50.000 5.77 0.00 0.00 3.16
306 312 0.523335 GCCTTTAATCGCGTGGCAAG 60.523 55.000 5.77 4.99 42.79 4.01
307 313 1.504446 GCCTTTAATCGCGTGGCAA 59.496 52.632 5.77 0.00 42.79 4.52
308 314 2.403378 GGCCTTTAATCGCGTGGCA 61.403 57.895 5.77 0.00 44.85 4.92
309 315 2.407616 GGCCTTTAATCGCGTGGC 59.592 61.111 5.77 11.23 42.56 5.01
310 316 1.747367 TGGGCCTTTAATCGCGTGG 60.747 57.895 5.77 1.41 0.00 4.94
311 317 1.024579 AGTGGGCCTTTAATCGCGTG 61.025 55.000 5.77 0.00 0.00 5.34
312 318 0.538118 TAGTGGGCCTTTAATCGCGT 59.462 50.000 5.77 0.00 0.00 6.01
313 319 1.878953 ATAGTGGGCCTTTAATCGCG 58.121 50.000 4.53 0.00 0.00 5.87
314 320 5.705905 AGATAAATAGTGGGCCTTTAATCGC 59.294 40.000 4.53 0.00 0.00 4.58
315 321 8.095169 AGTAGATAAATAGTGGGCCTTTAATCG 58.905 37.037 4.53 0.00 0.00 3.34
316 322 9.438228 GAGTAGATAAATAGTGGGCCTTTAATC 57.562 37.037 4.53 0.00 0.00 1.75
317 323 8.383947 GGAGTAGATAAATAGTGGGCCTTTAAT 58.616 37.037 4.53 0.00 0.00 1.40
318 324 7.202158 GGGAGTAGATAAATAGTGGGCCTTTAA 60.202 40.741 4.53 0.00 0.00 1.52
319 325 6.271624 GGGAGTAGATAAATAGTGGGCCTTTA 59.728 42.308 4.53 1.17 0.00 1.85
320 326 5.073280 GGGAGTAGATAAATAGTGGGCCTTT 59.927 44.000 4.53 0.00 0.00 3.11
321 327 4.597940 GGGAGTAGATAAATAGTGGGCCTT 59.402 45.833 4.53 0.00 0.00 4.35
322 328 4.140423 AGGGAGTAGATAAATAGTGGGCCT 60.140 45.833 4.53 0.00 0.00 5.19
323 329 4.168883 AGGGAGTAGATAAATAGTGGGCC 58.831 47.826 0.00 0.00 0.00 5.80
324 330 4.223255 GGAGGGAGTAGATAAATAGTGGGC 59.777 50.000 0.00 0.00 0.00 5.36
325 331 4.463186 CGGAGGGAGTAGATAAATAGTGGG 59.537 50.000 0.00 0.00 0.00 4.61
326 332 5.078256 ACGGAGGGAGTAGATAAATAGTGG 58.922 45.833 0.00 0.00 0.00 4.00
327 333 5.183522 GGACGGAGGGAGTAGATAAATAGTG 59.816 48.000 0.00 0.00 0.00 2.74
328 334 5.323581 GGACGGAGGGAGTAGATAAATAGT 58.676 45.833 0.00 0.00 0.00 2.12
329 335 4.395542 CGGACGGAGGGAGTAGATAAATAG 59.604 50.000 0.00 0.00 0.00 1.73
330 336 4.330250 CGGACGGAGGGAGTAGATAAATA 58.670 47.826 0.00 0.00 0.00 1.40
331 337 3.155501 CGGACGGAGGGAGTAGATAAAT 58.844 50.000 0.00 0.00 0.00 1.40
332 338 2.579873 CGGACGGAGGGAGTAGATAAA 58.420 52.381 0.00 0.00 0.00 1.40
333 339 1.202855 CCGGACGGAGGGAGTAGATAA 60.203 57.143 4.40 0.00 37.50 1.75
334 340 0.399454 CCGGACGGAGGGAGTAGATA 59.601 60.000 4.40 0.00 37.50 1.98
335 341 1.150992 CCGGACGGAGGGAGTAGAT 59.849 63.158 4.40 0.00 37.50 1.98
336 342 1.565390 TTCCGGACGGAGGGAGTAGA 61.565 60.000 13.64 0.00 46.06 2.59
337 343 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
338 344 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
339 345 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
340 346 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
341 347 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
342 348 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
343 349 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
344 350 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
345 351 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
346 352 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
347 353 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
348 354 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
349 355 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
350 356 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
351 357 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
358 364 8.090214 CCACTTTTATCCATTTTGATGACAAGT 58.910 33.333 0.00 0.00 37.32 3.16
359 365 8.306038 TCCACTTTTATCCATTTTGATGACAAG 58.694 33.333 0.00 0.00 37.32 3.16
360 366 8.187913 TCCACTTTTATCCATTTTGATGACAA 57.812 30.769 0.00 0.00 0.00 3.18
361 367 7.773489 TCCACTTTTATCCATTTTGATGACA 57.227 32.000 0.00 0.00 0.00 3.58
362 368 7.707893 CCATCCACTTTTATCCATTTTGATGAC 59.292 37.037 0.00 0.00 0.00 3.06
363 369 7.618907 TCCATCCACTTTTATCCATTTTGATGA 59.381 33.333 0.00 0.00 0.00 2.92
364 370 7.784037 TCCATCCACTTTTATCCATTTTGATG 58.216 34.615 0.00 0.00 0.00 3.07
365 371 7.976414 TCCATCCACTTTTATCCATTTTGAT 57.024 32.000 0.00 0.00 0.00 2.57
366 372 7.840716 AGATCCATCCACTTTTATCCATTTTGA 59.159 33.333 0.00 0.00 0.00 2.69
367 373 8.015185 AGATCCATCCACTTTTATCCATTTTG 57.985 34.615 0.00 0.00 0.00 2.44
368 374 9.713684 TTAGATCCATCCACTTTTATCCATTTT 57.286 29.630 0.00 0.00 0.00 1.82
369 375 9.713684 TTTAGATCCATCCACTTTTATCCATTT 57.286 29.630 0.00 0.00 0.00 2.32
370 376 9.136323 GTTTAGATCCATCCACTTTTATCCATT 57.864 33.333 0.00 0.00 0.00 3.16
371 377 7.445402 CGTTTAGATCCATCCACTTTTATCCAT 59.555 37.037 0.00 0.00 0.00 3.41
372 378 6.765989 CGTTTAGATCCATCCACTTTTATCCA 59.234 38.462 0.00 0.00 0.00 3.41
373 379 6.766467 ACGTTTAGATCCATCCACTTTTATCC 59.234 38.462 0.00 0.00 0.00 2.59
374 380 7.787725 ACGTTTAGATCCATCCACTTTTATC 57.212 36.000 0.00 0.00 0.00 1.75
375 381 9.847224 AATACGTTTAGATCCATCCACTTTTAT 57.153 29.630 0.00 0.00 0.00 1.40
376 382 9.675464 AAATACGTTTAGATCCATCCACTTTTA 57.325 29.630 0.00 0.00 0.00 1.52
377 383 8.575649 AAATACGTTTAGATCCATCCACTTTT 57.424 30.769 0.00 0.00 0.00 2.27
378 384 8.575649 AAAATACGTTTAGATCCATCCACTTT 57.424 30.769 0.00 0.00 0.00 2.66
430 436 9.418045 CCGTCCAAAAATACTTGTTATCAAAAT 57.582 29.630 0.00 0.00 32.87 1.82
431 437 8.630917 TCCGTCCAAAAATACTTGTTATCAAAA 58.369 29.630 0.00 0.00 32.87 2.44
432 438 8.167605 TCCGTCCAAAAATACTTGTTATCAAA 57.832 30.769 0.00 0.00 32.87 2.69
433 439 7.094549 CCTCCGTCCAAAAATACTTGTTATCAA 60.095 37.037 0.00 0.00 0.00 2.57
434 440 6.373216 CCTCCGTCCAAAAATACTTGTTATCA 59.627 38.462 0.00 0.00 0.00 2.15
435 441 6.183360 CCCTCCGTCCAAAAATACTTGTTATC 60.183 42.308 0.00 0.00 0.00 1.75
436 442 5.650703 CCCTCCGTCCAAAAATACTTGTTAT 59.349 40.000 0.00 0.00 0.00 1.89
437 443 5.005094 CCCTCCGTCCAAAAATACTTGTTA 58.995 41.667 0.00 0.00 0.00 2.41
438 444 3.824443 CCCTCCGTCCAAAAATACTTGTT 59.176 43.478 0.00 0.00 0.00 2.83
439 445 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
440 446 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
441 447 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
442 448 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
443 449 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
444 450 4.966805 AGATACTCCCTCCGTCCAAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
445 451 3.780850 AGATACTCCCTCCGTCCAAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
446 452 3.055385 CAGATACTCCCTCCGTCCAAAAA 60.055 47.826 0.00 0.00 0.00 1.94
447 453 2.500098 CAGATACTCCCTCCGTCCAAAA 59.500 50.000 0.00 0.00 0.00 2.44
448 454 2.108168 CAGATACTCCCTCCGTCCAAA 58.892 52.381 0.00 0.00 0.00 3.28
449 455 1.006758 ACAGATACTCCCTCCGTCCAA 59.993 52.381 0.00 0.00 0.00 3.53
450 456 0.629596 ACAGATACTCCCTCCGTCCA 59.370 55.000 0.00 0.00 0.00 4.02
451 457 1.777941 AACAGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
452 458 4.583489 TGATAAACAGATACTCCCTCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
453 459 4.543689 TGATAAACAGATACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
454 460 5.531122 TTGATAAACAGATACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
455 461 6.890293 AGTTTGATAAACAGATACTCCCTCC 58.110 40.000 7.13 0.00 43.79 4.30
456 462 7.201652 GCAAGTTTGATAAACAGATACTCCCTC 60.202 40.741 7.13 0.00 43.79 4.30
457 463 6.599638 GCAAGTTTGATAAACAGATACTCCCT 59.400 38.462 7.13 0.00 43.79 4.20
458 464 6.599638 AGCAAGTTTGATAAACAGATACTCCC 59.400 38.462 7.13 0.00 43.79 4.30
459 465 7.464710 CGAGCAAGTTTGATAAACAGATACTCC 60.465 40.741 7.13 0.00 43.79 3.85
460 466 7.394872 CGAGCAAGTTTGATAAACAGATACTC 58.605 38.462 7.13 5.51 43.79 2.59
461 467 6.313905 CCGAGCAAGTTTGATAAACAGATACT 59.686 38.462 7.13 0.00 43.79 2.12
462 468 6.312918 TCCGAGCAAGTTTGATAAACAGATAC 59.687 38.462 7.13 0.00 43.79 2.24
463 469 6.403049 TCCGAGCAAGTTTGATAAACAGATA 58.597 36.000 7.13 0.00 43.79 1.98
483 489 0.611062 ACACACCCTCTCGAATCCGA 60.611 55.000 0.00 0.00 43.35 4.55
497 503 3.705604 ACAGCAAGCATAACAAACACAC 58.294 40.909 0.00 0.00 0.00 3.82
551 557 1.003355 CTGCTACTGTGTGGGGTGG 60.003 63.158 0.00 0.00 0.00 4.61
552 558 1.672356 GCTGCTACTGTGTGGGGTG 60.672 63.158 0.00 0.00 0.00 4.61
553 559 2.750350 GCTGCTACTGTGTGGGGT 59.250 61.111 0.00 0.00 0.00 4.95
554 560 2.434884 CGCTGCTACTGTGTGGGG 60.435 66.667 0.00 0.00 0.00 4.96
570 577 4.332543 TGCTGACTGGATAATTAGTTTGCG 59.667 41.667 0.00 0.00 32.22 4.85
572 579 6.094603 AGCTTGCTGACTGGATAATTAGTTTG 59.905 38.462 0.00 0.00 0.00 2.93
595 602 1.300971 TGAGATGCAGCAACCGAAGC 61.301 55.000 4.07 0.00 0.00 3.86
603 621 0.971386 TCAGAGTGTGAGATGCAGCA 59.029 50.000 4.07 0.00 0.00 4.41
615 633 6.172136 ACATCAGGAATAGGAATCAGAGTG 57.828 41.667 0.00 0.00 0.00 3.51
628 646 6.173339 ACGACAAGTGATAAACATCAGGAAT 58.827 36.000 0.00 0.00 0.00 3.01
629 647 5.547465 ACGACAAGTGATAAACATCAGGAA 58.453 37.500 0.00 0.00 0.00 3.36
631 649 5.621422 CAACGACAAGTGATAAACATCAGG 58.379 41.667 0.00 0.00 0.00 3.86
632 650 5.082059 GCAACGACAAGTGATAAACATCAG 58.918 41.667 0.00 0.00 0.00 2.90
633 651 4.754618 AGCAACGACAAGTGATAAACATCA 59.245 37.500 0.00 0.00 0.00 3.07
634 652 5.283060 AGCAACGACAAGTGATAAACATC 57.717 39.130 0.00 0.00 0.00 3.06
635 653 4.154195 GGAGCAACGACAAGTGATAAACAT 59.846 41.667 0.00 0.00 0.00 2.71
636 654 3.496884 GGAGCAACGACAAGTGATAAACA 59.503 43.478 0.00 0.00 0.00 2.83
637 655 3.496884 TGGAGCAACGACAAGTGATAAAC 59.503 43.478 0.00 0.00 0.00 2.01
638 656 3.734463 TGGAGCAACGACAAGTGATAAA 58.266 40.909 0.00 0.00 0.00 1.40
664 682 4.949856 ACTTGGAAATTGATAAGCGTGGAT 59.050 37.500 0.00 0.00 0.00 3.41
666 684 4.701956 ACTTGGAAATTGATAAGCGTGG 57.298 40.909 0.00 0.00 0.00 4.94
693 711 0.866483 GTACGCAGCGAAGTCTAGCC 60.866 60.000 24.65 0.00 0.00 3.93
706 724 0.672889 TACAACCGTGGAAGTACGCA 59.327 50.000 0.00 0.00 42.44 5.24
708 726 1.669795 GGGTACAACCGTGGAAGTACG 60.670 57.143 14.59 0.00 39.83 3.67
710 728 1.895131 GAGGGTACAACCGTGGAAGTA 59.105 52.381 0.00 0.00 39.83 2.24
945 998 7.204496 ACTCGCACGAAGAAGATATATAGTT 57.796 36.000 0.00 0.00 0.00 2.24
946 999 6.401260 CGACTCGCACGAAGAAGATATATAGT 60.401 42.308 0.00 0.00 0.00 2.12
1278 1396 3.673484 TTCACGACGACCCGGGAC 61.673 66.667 32.02 22.23 42.18 4.46
1280 1398 3.621892 GAGTTCACGACGACCCGGG 62.622 68.421 22.25 22.25 0.00 5.73
1281 1399 2.126580 GAGTTCACGACGACCCGG 60.127 66.667 0.00 0.00 0.00 5.73
1404 1522 4.344474 CTCCGGCCGCGGTAGATC 62.344 72.222 28.70 9.35 0.00 2.75
1443 1561 3.499737 GCGGCCTGGAACGACATG 61.500 66.667 14.14 0.00 0.00 3.21
1554 1672 1.606224 CCGTACCTGTACCGCACTTTT 60.606 52.381 2.04 0.00 32.61 2.27
1578 1696 2.571757 GCCGAGGTCGTCATCACA 59.428 61.111 0.00 0.00 37.74 3.58
1703 1821 4.399934 AGCGGCGATATTTTTCCCTAAAAA 59.600 37.500 12.98 0.00 45.89 1.94
1704 1822 3.949113 AGCGGCGATATTTTTCCCTAAAA 59.051 39.130 12.98 0.00 39.88 1.52
1705 1823 3.547746 AGCGGCGATATTTTTCCCTAAA 58.452 40.909 12.98 0.00 0.00 1.85
1706 1824 3.202829 AGCGGCGATATTTTTCCCTAA 57.797 42.857 12.98 0.00 0.00 2.69
1707 1825 2.922740 AGCGGCGATATTTTTCCCTA 57.077 45.000 12.98 0.00 0.00 3.53
1708 1826 2.052782 AAGCGGCGATATTTTTCCCT 57.947 45.000 12.98 0.00 0.00 4.20
1709 1827 2.863401 AAAGCGGCGATATTTTTCCC 57.137 45.000 12.98 0.00 0.00 3.97
1710 1828 7.272731 GGATAAATAAAGCGGCGATATTTTTCC 59.727 37.037 26.41 26.41 38.61 3.13
1711 1829 7.007099 CGGATAAATAAAGCGGCGATATTTTTC 59.993 37.037 22.09 21.62 32.90 2.29
1712 1830 6.799925 CGGATAAATAAAGCGGCGATATTTTT 59.200 34.615 22.09 17.21 32.90 1.94
1713 1831 6.148150 TCGGATAAATAAAGCGGCGATATTTT 59.852 34.615 22.09 14.48 32.90 1.82
1714 1832 5.640357 TCGGATAAATAAAGCGGCGATATTT 59.360 36.000 12.98 18.66 34.55 1.40
1715 1833 5.172934 TCGGATAAATAAAGCGGCGATATT 58.827 37.500 12.98 9.10 0.00 1.28
1716 1834 4.751060 TCGGATAAATAAAGCGGCGATAT 58.249 39.130 12.98 2.44 0.00 1.63
1717 1835 4.082625 TCTCGGATAAATAAAGCGGCGATA 60.083 41.667 12.98 0.00 0.00 2.92
1718 1836 2.993899 CTCGGATAAATAAAGCGGCGAT 59.006 45.455 12.98 0.00 0.00 4.58
1719 1837 2.034939 TCTCGGATAAATAAAGCGGCGA 59.965 45.455 12.98 0.00 0.00 5.54
1720 1838 2.400399 TCTCGGATAAATAAAGCGGCG 58.600 47.619 0.51 0.51 0.00 6.46
1721 1839 5.407387 TGTAATCTCGGATAAATAAAGCGGC 59.593 40.000 0.00 0.00 0.00 6.53
1722 1840 7.330946 TGATGTAATCTCGGATAAATAAAGCGG 59.669 37.037 0.00 0.00 45.81 5.52
1723 1841 8.239681 TGATGTAATCTCGGATAAATAAAGCG 57.760 34.615 0.00 0.00 45.81 4.68
1724 1842 8.171840 GCTGATGTAATCTCGGATAAATAAAGC 58.828 37.037 0.00 0.00 45.81 3.51
1725 1843 9.208022 TGCTGATGTAATCTCGGATAAATAAAG 57.792 33.333 0.00 0.00 45.81 1.85
1726 1844 9.554395 TTGCTGATGTAATCTCGGATAAATAAA 57.446 29.630 0.00 0.00 45.81 1.40
1727 1845 8.988934 GTTGCTGATGTAATCTCGGATAAATAA 58.011 33.333 0.00 0.00 45.81 1.40
1728 1846 8.147704 TGTTGCTGATGTAATCTCGGATAAATA 58.852 33.333 0.00 0.00 45.81 1.40
1729 1847 6.992123 TGTTGCTGATGTAATCTCGGATAAAT 59.008 34.615 0.00 0.00 45.81 1.40
1730 1848 6.345298 TGTTGCTGATGTAATCTCGGATAAA 58.655 36.000 0.00 0.00 45.81 1.40
1731 1849 5.912892 TGTTGCTGATGTAATCTCGGATAA 58.087 37.500 0.00 0.00 45.81 1.75
1732 1850 5.529581 TGTTGCTGATGTAATCTCGGATA 57.470 39.130 0.00 0.00 45.81 2.59
1733 1851 4.406648 TGTTGCTGATGTAATCTCGGAT 57.593 40.909 0.00 0.00 45.81 4.18
1734 1852 3.885724 TGTTGCTGATGTAATCTCGGA 57.114 42.857 0.00 0.00 45.81 4.55
1735 1853 4.393062 ACTTTGTTGCTGATGTAATCTCGG 59.607 41.667 0.00 0.00 45.81 4.63
1736 1854 5.446473 GGACTTTGTTGCTGATGTAATCTCG 60.446 44.000 0.00 0.00 45.81 4.04
1737 1855 5.446473 CGGACTTTGTTGCTGATGTAATCTC 60.446 44.000 0.00 0.00 45.81 2.75
1738 1856 4.393062 CGGACTTTGTTGCTGATGTAATCT 59.607 41.667 0.00 0.00 45.81 2.40
1739 1857 4.437390 CCGGACTTTGTTGCTGATGTAATC 60.437 45.833 0.00 0.00 45.83 1.75
1740 1858 3.440173 CCGGACTTTGTTGCTGATGTAAT 59.560 43.478 0.00 0.00 0.00 1.89
1741 1859 2.811431 CCGGACTTTGTTGCTGATGTAA 59.189 45.455 0.00 0.00 0.00 2.41
1742 1860 2.422597 CCGGACTTTGTTGCTGATGTA 58.577 47.619 0.00 0.00 0.00 2.29
1743 1861 1.238439 CCGGACTTTGTTGCTGATGT 58.762 50.000 0.00 0.00 0.00 3.06
1744 1862 0.523072 CCCGGACTTTGTTGCTGATG 59.477 55.000 0.73 0.00 0.00 3.07
1745 1863 0.609131 CCCCGGACTTTGTTGCTGAT 60.609 55.000 0.73 0.00 0.00 2.90
1746 1864 1.228124 CCCCGGACTTTGTTGCTGA 60.228 57.895 0.73 0.00 0.00 4.26
1747 1865 0.821711 TTCCCCGGACTTTGTTGCTG 60.822 55.000 0.73 0.00 0.00 4.41
1748 1866 0.537371 CTTCCCCGGACTTTGTTGCT 60.537 55.000 0.73 0.00 0.00 3.91
1749 1867 1.956802 CTTCCCCGGACTTTGTTGC 59.043 57.895 0.73 0.00 0.00 4.17
1750 1868 1.524008 GGCTTCCCCGGACTTTGTTG 61.524 60.000 0.73 0.00 0.00 3.33
1751 1869 1.228459 GGCTTCCCCGGACTTTGTT 60.228 57.895 0.73 0.00 0.00 2.83
1752 1870 2.434774 GGCTTCCCCGGACTTTGT 59.565 61.111 0.73 0.00 0.00 2.83
1753 1871 2.361230 GGGCTTCCCCGGACTTTG 60.361 66.667 0.73 0.00 42.67 2.77
1763 1881 1.606601 GGTTTGGTCAGGGGCTTCC 60.607 63.158 0.00 0.00 0.00 3.46
1764 1882 0.178961 AAGGTTTGGTCAGGGGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
1765 1883 1.154430 TAAGGTTTGGTCAGGGGCTT 58.846 50.000 0.00 0.00 0.00 4.35
1766 1884 0.404426 GTAAGGTTTGGTCAGGGGCT 59.596 55.000 0.00 0.00 0.00 5.19
1767 1885 0.111639 TGTAAGGTTTGGTCAGGGGC 59.888 55.000 0.00 0.00 0.00 5.80
1768 1886 2.668144 TTGTAAGGTTTGGTCAGGGG 57.332 50.000 0.00 0.00 0.00 4.79
1769 1887 5.069781 TGAATTTTGTAAGGTTTGGTCAGGG 59.930 40.000 0.00 0.00 0.00 4.45
1770 1888 6.155475 TGAATTTTGTAAGGTTTGGTCAGG 57.845 37.500 0.00 0.00 0.00 3.86
1771 1889 7.661040 AGATGAATTTTGTAAGGTTTGGTCAG 58.339 34.615 0.00 0.00 0.00 3.51
1772 1890 7.286546 TGAGATGAATTTTGTAAGGTTTGGTCA 59.713 33.333 0.00 0.00 0.00 4.02
1773 1891 7.657336 TGAGATGAATTTTGTAAGGTTTGGTC 58.343 34.615 0.00 0.00 0.00 4.02
1774 1892 7.595819 TGAGATGAATTTTGTAAGGTTTGGT 57.404 32.000 0.00 0.00 0.00 3.67
1775 1893 8.764287 GTTTGAGATGAATTTTGTAAGGTTTGG 58.236 33.333 0.00 0.00 0.00 3.28
1776 1894 9.311916 TGTTTGAGATGAATTTTGTAAGGTTTG 57.688 29.630 0.00 0.00 0.00 2.93
1788 1906 9.453572 TGCTAGAGTAAATGTTTGAGATGAATT 57.546 29.630 0.00 0.00 0.00 2.17
1789 1907 9.453572 TTGCTAGAGTAAATGTTTGAGATGAAT 57.546 29.630 0.00 0.00 0.00 2.57
1790 1908 8.846943 TTGCTAGAGTAAATGTTTGAGATGAA 57.153 30.769 0.00 0.00 0.00 2.57
1791 1909 8.846943 TTTGCTAGAGTAAATGTTTGAGATGA 57.153 30.769 0.00 0.00 0.00 2.92
1798 1916 9.289303 CGCATAAATTTGCTAGAGTAAATGTTT 57.711 29.630 6.39 2.73 39.63 2.83
1799 1917 7.432252 GCGCATAAATTTGCTAGAGTAAATGTT 59.568 33.333 0.30 6.22 39.63 2.71
1800 1918 6.912591 GCGCATAAATTTGCTAGAGTAAATGT 59.087 34.615 0.30 4.12 39.63 2.71
1801 1919 6.912051 TGCGCATAAATTTGCTAGAGTAAATG 59.088 34.615 5.66 0.00 39.63 2.32
1802 1920 7.026631 TGCGCATAAATTTGCTAGAGTAAAT 57.973 32.000 5.66 0.30 41.06 1.40
1803 1921 6.429791 TGCGCATAAATTTGCTAGAGTAAA 57.570 33.333 5.66 0.00 40.54 2.01
1804 1922 5.504010 GCTGCGCATAAATTTGCTAGAGTAA 60.504 40.000 12.24 0.00 40.54 2.24
1805 1923 4.024893 GCTGCGCATAAATTTGCTAGAGTA 60.025 41.667 12.24 0.00 40.54 2.59
1806 1924 3.242870 GCTGCGCATAAATTTGCTAGAGT 60.243 43.478 12.24 0.00 40.54 3.24
1807 1925 3.242837 TGCTGCGCATAAATTTGCTAGAG 60.243 43.478 12.24 0.00 40.54 2.43
1808 1926 2.682352 TGCTGCGCATAAATTTGCTAGA 59.318 40.909 12.24 0.00 40.54 2.43
1809 1927 3.069074 TGCTGCGCATAAATTTGCTAG 57.931 42.857 12.24 0.00 40.54 3.42
1810 1928 3.500558 TTGCTGCGCATAAATTTGCTA 57.499 38.095 12.24 2.59 40.54 3.49
1811 1929 2.367030 TTGCTGCGCATAAATTTGCT 57.633 40.000 12.24 0.00 40.54 3.91
1812 1930 4.431986 CGATATTGCTGCGCATAAATTTGC 60.432 41.667 12.24 9.93 38.76 3.68
1813 1931 4.088923 CCGATATTGCTGCGCATAAATTTG 59.911 41.667 12.24 0.00 38.76 2.32
1814 1932 4.229096 CCGATATTGCTGCGCATAAATTT 58.771 39.130 12.24 9.14 38.76 1.82
1815 1933 3.825308 CCGATATTGCTGCGCATAAATT 58.175 40.909 12.24 5.23 38.76 1.82
1816 1934 2.414559 GCCGATATTGCTGCGCATAAAT 60.415 45.455 12.24 16.27 38.76 1.40
1817 1935 1.069296 GCCGATATTGCTGCGCATAAA 60.069 47.619 12.24 9.20 38.76 1.40
1818 1936 0.516877 GCCGATATTGCTGCGCATAA 59.483 50.000 12.24 10.41 38.76 1.90
1819 1937 0.320683 AGCCGATATTGCTGCGCATA 60.321 50.000 12.24 0.00 38.76 3.14
1820 1938 1.598962 AGCCGATATTGCTGCGCAT 60.599 52.632 12.24 0.00 38.76 4.73
1821 1939 2.203056 AGCCGATATTGCTGCGCA 60.203 55.556 10.98 10.98 37.76 6.09
1826 1944 1.668419 GGTGTTCAGCCGATATTGCT 58.332 50.000 0.00 0.00 40.41 3.91
1835 1953 1.243902 TTTTGGATCGGTGTTCAGCC 58.756 50.000 0.00 0.00 0.00 4.85
1836 1954 3.689649 AGTATTTTGGATCGGTGTTCAGC 59.310 43.478 0.00 0.00 0.00 4.26
1837 1955 5.880054 AAGTATTTTGGATCGGTGTTCAG 57.120 39.130 0.00 0.00 0.00 3.02
1838 1956 7.747155 TTAAAGTATTTTGGATCGGTGTTCA 57.253 32.000 0.00 0.00 40.09 3.18
1839 1957 8.908678 GTTTTAAAGTATTTTGGATCGGTGTTC 58.091 33.333 0.00 0.00 40.09 3.18
1840 1958 7.868922 GGTTTTAAAGTATTTTGGATCGGTGTT 59.131 33.333 0.00 0.00 40.09 3.32
1841 1959 7.014422 TGGTTTTAAAGTATTTTGGATCGGTGT 59.986 33.333 0.00 0.00 40.09 4.16
1842 1960 7.371936 TGGTTTTAAAGTATTTTGGATCGGTG 58.628 34.615 0.00 0.00 40.09 4.94
1843 1961 7.527568 TGGTTTTAAAGTATTTTGGATCGGT 57.472 32.000 0.00 0.00 40.09 4.69
1844 1962 7.010091 GCATGGTTTTAAAGTATTTTGGATCGG 59.990 37.037 0.00 0.00 40.09 4.18
1845 1963 7.759433 AGCATGGTTTTAAAGTATTTTGGATCG 59.241 33.333 0.00 0.00 40.09 3.69
1893 2011 7.497925 TGTTTGCAGGTTTTAAAGTGTTTTT 57.502 28.000 0.00 0.00 0.00 1.94
1894 2012 7.497925 TTGTTTGCAGGTTTTAAAGTGTTTT 57.502 28.000 0.00 0.00 0.00 2.43
1895 2013 7.680442 ATTGTTTGCAGGTTTTAAAGTGTTT 57.320 28.000 0.00 0.00 0.00 2.83
1896 2014 7.525759 CAATTGTTTGCAGGTTTTAAAGTGTT 58.474 30.769 0.00 0.00 0.00 3.32
1897 2015 7.071014 CAATTGTTTGCAGGTTTTAAAGTGT 57.929 32.000 0.00 0.00 0.00 3.55
1911 2029 7.690637 CATAAAGATGATGTTGCAATTGTTTGC 59.309 33.333 0.59 3.81 45.65 3.68
1912 2030 8.714179 ACATAAAGATGATGTTGCAATTGTTTG 58.286 29.630 0.59 0.00 33.70 2.93
1913 2031 8.836268 ACATAAAGATGATGTTGCAATTGTTT 57.164 26.923 0.59 0.23 33.70 2.83
1914 2032 7.274033 CGACATAAAGATGATGTTGCAATTGTT 59.726 33.333 0.59 0.00 37.65 2.83
1915 2033 6.748658 CGACATAAAGATGATGTTGCAATTGT 59.251 34.615 0.59 0.00 37.65 2.71
1916 2034 6.968335 TCGACATAAAGATGATGTTGCAATTG 59.032 34.615 0.59 0.00 37.65 2.32
1917 2035 6.968904 GTCGACATAAAGATGATGTTGCAATT 59.031 34.615 11.55 0.00 37.65 2.32
1918 2036 6.489675 GTCGACATAAAGATGATGTTGCAAT 58.510 36.000 11.55 0.00 37.65 3.56
1919 2037 5.445806 CGTCGACATAAAGATGATGTTGCAA 60.446 40.000 17.16 0.00 37.65 4.08
1920 2038 4.032786 CGTCGACATAAAGATGATGTTGCA 59.967 41.667 17.16 0.00 37.65 4.08
1921 2039 4.508971 CGTCGACATAAAGATGATGTTGC 58.491 43.478 17.16 0.00 37.65 4.17
1922 2040 4.032786 TGCGTCGACATAAAGATGATGTTG 59.967 41.667 17.16 0.00 37.65 3.33
1923 2041 4.032900 GTGCGTCGACATAAAGATGATGTT 59.967 41.667 17.16 0.00 37.65 2.71
1924 2042 3.551890 GTGCGTCGACATAAAGATGATGT 59.448 43.478 17.16 0.00 40.25 3.06
1925 2043 3.361051 CGTGCGTCGACATAAAGATGATG 60.361 47.826 17.16 0.00 42.86 3.07
1926 2044 2.789339 CGTGCGTCGACATAAAGATGAT 59.211 45.455 17.16 0.00 42.86 2.45
1927 2045 2.159490 TCGTGCGTCGACATAAAGATGA 60.159 45.455 17.16 0.33 44.01 2.92
1928 2046 2.182014 TCGTGCGTCGACATAAAGATG 58.818 47.619 17.16 0.00 44.01 2.90
1929 2047 2.554806 TCGTGCGTCGACATAAAGAT 57.445 45.000 17.16 0.00 44.01 2.40
1938 2056 1.788067 TTTCTCTGGTCGTGCGTCGA 61.788 55.000 0.00 0.00 46.83 4.20
1939 2057 0.732880 ATTTCTCTGGTCGTGCGTCG 60.733 55.000 0.00 0.00 41.41 5.12
1940 2058 0.716108 CATTTCTCTGGTCGTGCGTC 59.284 55.000 0.00 0.00 0.00 5.19
1941 2059 0.670546 CCATTTCTCTGGTCGTGCGT 60.671 55.000 0.00 0.00 0.00 5.24
1942 2060 1.970917 GCCATTTCTCTGGTCGTGCG 61.971 60.000 0.00 0.00 38.63 5.34
1943 2061 0.955428 TGCCATTTCTCTGGTCGTGC 60.955 55.000 0.00 0.00 38.63 5.34
1944 2062 1.081892 CTGCCATTTCTCTGGTCGTG 58.918 55.000 0.00 0.00 38.63 4.35
1945 2063 0.036010 CCTGCCATTTCTCTGGTCGT 60.036 55.000 0.00 0.00 38.63 4.34
1946 2064 1.372087 GCCTGCCATTTCTCTGGTCG 61.372 60.000 0.00 0.00 38.63 4.79
1947 2065 1.034292 GGCCTGCCATTTCTCTGGTC 61.034 60.000 2.58 0.00 38.63 4.02
1948 2066 1.000396 GGCCTGCCATTTCTCTGGT 60.000 57.895 2.58 0.00 38.63 4.00
1949 2067 1.755783 GGGCCTGCCATTTCTCTGG 60.756 63.158 10.86 0.00 39.45 3.86
1950 2068 1.755783 GGGGCCTGCCATTTCTCTG 60.756 63.158 10.86 0.00 37.98 3.35
1951 2069 2.685999 GGGGCCTGCCATTTCTCT 59.314 61.111 10.86 0.00 37.98 3.10
1952 2070 2.442830 GGGGGCCTGCCATTTCTC 60.443 66.667 10.86 0.00 37.98 2.87
1953 2071 4.447342 CGGGGGCCTGCCATTTCT 62.447 66.667 10.86 0.00 37.98 2.52
1966 2084 3.584052 CTAGGAGACGACGCGGGG 61.584 72.222 12.47 3.65 0.00 5.73
1967 2085 2.513204 TCTAGGAGACGACGCGGG 60.513 66.667 12.47 4.10 0.00 6.13
1968 2086 2.535788 CCTCTAGGAGACGACGCGG 61.536 68.421 12.47 0.00 37.39 6.46
1969 2087 3.015677 CCTCTAGGAGACGACGCG 58.984 66.667 3.53 3.53 37.39 6.01
1970 2088 2.716864 GCCTCTAGGAGACGACGC 59.283 66.667 0.00 0.00 37.39 5.19
1971 2089 1.521010 TCGCCTCTAGGAGACGACG 60.521 63.158 0.00 0.00 39.39 5.12
1972 2090 4.536316 TCGCCTCTAGGAGACGAC 57.464 61.111 0.00 0.00 39.39 4.34
1976 2094 1.146485 CCGAGTCGCCTCTAGGAGA 59.854 63.158 7.12 0.00 41.79 3.71
1977 2095 1.894756 CCCGAGTCGCCTCTAGGAG 60.895 68.421 7.12 0.00 37.39 3.69
1978 2096 2.192443 CCCGAGTCGCCTCTAGGA 59.808 66.667 7.12 0.00 37.39 2.94
1979 2097 3.597728 GCCCGAGTCGCCTCTAGG 61.598 72.222 7.12 2.73 35.43 3.02
1980 2098 3.955101 CGCCCGAGTCGCCTCTAG 61.955 72.222 7.12 0.00 35.43 2.43
1994 2112 2.124024 GGGTATTGGGGTTCCGCC 60.124 66.667 3.54 0.00 36.97 6.13
1995 2113 2.124024 GGGGTATTGGGGTTCCGC 60.124 66.667 0.00 0.00 35.24 5.54
1996 2114 2.599032 GGGGGTATTGGGGTTCCG 59.401 66.667 0.00 0.00 35.24 4.30
1997 2115 2.274948 GACGGGGGTATTGGGGTTCC 62.275 65.000 0.00 0.00 0.00 3.62
1998 2116 1.225426 GACGGGGGTATTGGGGTTC 59.775 63.158 0.00 0.00 0.00 3.62
1999 2117 2.672181 CGACGGGGGTATTGGGGTT 61.672 63.158 0.00 0.00 0.00 4.11
2000 2118 3.085296 CGACGGGGGTATTGGGGT 61.085 66.667 0.00 0.00 0.00 4.95
2001 2119 3.085296 ACGACGGGGGTATTGGGG 61.085 66.667 0.00 0.00 0.00 4.96
2002 2120 2.306255 CTGACGACGGGGGTATTGGG 62.306 65.000 0.00 0.00 0.00 4.12
2003 2121 1.143183 CTGACGACGGGGGTATTGG 59.857 63.158 0.00 0.00 0.00 3.16
2004 2122 0.179119 GTCTGACGACGGGGGTATTG 60.179 60.000 0.00 0.00 0.00 1.90
2005 2123 1.325476 GGTCTGACGACGGGGGTATT 61.325 60.000 0.00 0.00 41.16 1.89
2006 2124 1.755783 GGTCTGACGACGGGGGTAT 60.756 63.158 0.00 0.00 41.16 2.73
2007 2125 2.361610 GGTCTGACGACGGGGGTA 60.362 66.667 0.00 0.00 41.16 3.69
2012 2130 3.450115 GAGGGGGTCTGACGACGG 61.450 72.222 0.00 0.00 41.16 4.79
2013 2131 3.450115 GGAGGGGGTCTGACGACG 61.450 72.222 1.07 0.00 41.16 5.12
2014 2132 2.037527 AGGAGGGGGTCTGACGAC 59.962 66.667 1.07 0.00 39.49 4.34
2015 2133 2.359404 GAGGAGGGGGTCTGACGA 59.641 66.667 1.07 0.00 0.00 4.20
2016 2134 2.760385 GGAGGAGGGGGTCTGACG 60.760 72.222 1.07 0.00 0.00 4.35
2017 2135 1.990614 GTGGAGGAGGGGGTCTGAC 60.991 68.421 0.00 0.00 0.00 3.51
2018 2136 2.450243 GTGGAGGAGGGGGTCTGA 59.550 66.667 0.00 0.00 0.00 3.27
2019 2137 2.689034 GGTGGAGGAGGGGGTCTG 60.689 72.222 0.00 0.00 0.00 3.51
2020 2138 3.208592 TGGTGGAGGAGGGGGTCT 61.209 66.667 0.00 0.00 0.00 3.85
2021 2139 3.009714 GTGGTGGAGGAGGGGGTC 61.010 72.222 0.00 0.00 0.00 4.46
2022 2140 4.677151 GGTGGTGGAGGAGGGGGT 62.677 72.222 0.00 0.00 0.00 4.95
2023 2141 4.354943 AGGTGGTGGAGGAGGGGG 62.355 72.222 0.00 0.00 0.00 5.40
2024 2142 2.689034 GAGGTGGTGGAGGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
2025 2143 1.687493 GAGAGGTGGTGGAGGAGGG 60.687 68.421 0.00 0.00 0.00 4.30
2026 2144 1.687493 GGAGAGGTGGTGGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
2027 2145 0.686112 GAGGAGAGGTGGTGGAGGAG 60.686 65.000 0.00 0.00 0.00 3.69
2028 2146 1.388531 GAGGAGAGGTGGTGGAGGA 59.611 63.158 0.00 0.00 0.00 3.71
2029 2147 2.055042 CGAGGAGAGGTGGTGGAGG 61.055 68.421 0.00 0.00 0.00 4.30
2030 2148 2.716017 GCGAGGAGAGGTGGTGGAG 61.716 68.421 0.00 0.00 0.00 3.86
2031 2149 2.680352 GCGAGGAGAGGTGGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
2032 2150 3.775654 GGCGAGGAGAGGTGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
2033 2151 4.135153 CGGCGAGGAGAGGTGGTG 62.135 72.222 0.00 0.00 0.00 4.17
2054 2172 2.202570 CCTGACGACGTTAGCCGG 60.203 66.667 13.89 0.00 42.24 6.13
2061 2179 2.633509 GGGCTACACCTGACGACGT 61.634 63.158 0.00 0.00 39.10 4.34
2063 2181 2.577593 GGGGCTACACCTGACGAC 59.422 66.667 0.00 0.00 39.10 4.34
2064 2182 2.682494 GGGGGCTACACCTGACGA 60.682 66.667 0.00 0.00 39.10 4.20
2065 2183 4.143333 CGGGGGCTACACCTGACG 62.143 72.222 0.00 0.00 39.10 4.35
2067 2185 3.000819 CACGGGGGCTACACCTGA 61.001 66.667 0.65 0.00 37.80 3.86
2097 2215 4.658786 AGTGGGAGGGGCGGAAGT 62.659 66.667 0.00 0.00 0.00 3.01
2107 2225 2.124570 CCGCCATGGAAGTGGGAG 60.125 66.667 18.40 0.00 42.00 4.30
2127 2245 1.848932 CTTCACCAGACGACGACGGA 61.849 60.000 12.58 0.00 44.46 4.69
2128 2246 1.442184 CTTCACCAGACGACGACGG 60.442 63.158 12.58 4.27 44.46 4.79
2131 2249 1.579932 GAGCTTCACCAGACGACGA 59.420 57.895 0.00 0.00 0.00 4.20
2272 2390 2.782222 GGCACCGAGGCGTAGATCA 61.782 63.158 0.00 0.00 33.57 2.92
2301 2419 1.153568 GCACTAGCCGCACAGATCA 60.154 57.895 0.00 0.00 33.58 2.92
2393 2511 1.967066 CCGTCTTATCTGGCCAGAGAT 59.033 52.381 37.03 25.39 41.33 2.75
2396 2514 0.325296 ACCCGTCTTATCTGGCCAGA 60.325 55.000 36.73 36.73 42.37 3.86
2397 2515 0.541863 AACCCGTCTTATCTGGCCAG 59.458 55.000 27.87 27.87 0.00 4.85
2407 2525 1.377612 GCCCACCTAAACCCGTCTT 59.622 57.895 0.00 0.00 0.00 3.01
2408 2526 2.599757 GGCCCACCTAAACCCGTCT 61.600 63.158 0.00 0.00 0.00 4.18
2410 2528 3.654143 GGGCCCACCTAAACCCGT 61.654 66.667 19.95 0.00 35.85 5.28
2462 2580 2.029844 GGTGCAGAAGAGCGACCAC 61.030 63.158 0.00 0.00 36.41 4.16
2470 2588 0.960364 GCCCGATTTGGTGCAGAAGA 60.960 55.000 0.00 0.00 34.94 2.87
2489 2607 4.776322 TGAGGCCATGCGAACCCG 62.776 66.667 5.01 0.00 39.16 5.28
2515 2633 1.134848 GCAACTAGAGAGCACTGGGAG 60.135 57.143 0.00 0.00 0.00 4.30
2516 2634 0.898320 GCAACTAGAGAGCACTGGGA 59.102 55.000 0.00 0.00 0.00 4.37
2518 2636 0.459237 CCGCAACTAGAGAGCACTGG 60.459 60.000 0.00 0.00 0.00 4.00
2520 2638 1.216710 GCCGCAACTAGAGAGCACT 59.783 57.895 0.00 0.00 0.00 4.40
2587 2705 0.532862 AGAAGCAACATATCGGGCCG 60.533 55.000 22.51 22.51 0.00 6.13
2592 2710 4.346129 GCCAAAGAAGAAGCAACATATCG 58.654 43.478 0.00 0.00 0.00 2.92
2594 2712 3.448660 GGGCCAAAGAAGAAGCAACATAT 59.551 43.478 4.39 0.00 0.00 1.78
2604 2722 0.902531 CTACGGAGGGCCAAAGAAGA 59.097 55.000 6.18 0.00 0.00 2.87
2614 2732 2.413765 GAAGCGAGCTACGGAGGG 59.586 66.667 0.00 0.00 42.83 4.30
2648 2766 4.169271 CCGTAGCCCATCGGTCTA 57.831 61.111 0.00 0.00 41.58 2.59
2653 2771 2.202878 CACCACCGTAGCCCATCG 60.203 66.667 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.