Multiple sequence alignment - TraesCS3B01G407900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G407900 chr3B 100.000 2384 0 0 1 2384 643265207 643267590 0.000000e+00 4403.0
1 TraesCS3B01G407900 chr3B 94.624 279 8 3 360 633 361012896 361013172 2.190000e-115 425.0
2 TraesCS3B01G407900 chr3D 92.152 1134 50 21 631 1741 481710702 481711819 0.000000e+00 1565.0
3 TraesCS3B01G407900 chr3D 94.574 129 5 1 1761 1887 481711803 481711931 5.200000e-47 198.0
4 TraesCS3B01G407900 chr3D 88.079 151 10 3 148 293 481710457 481710604 3.150000e-39 172.0
5 TraesCS3B01G407900 chr3D 95.890 73 3 0 290 362 481710632 481710704 4.160000e-23 119.0
6 TraesCS3B01G407900 chr3A 90.918 1013 64 14 631 1623 624858513 624859517 0.000000e+00 1336.0
7 TraesCS3B01G407900 chr3A 88.367 447 33 8 1761 2197 624859886 624860323 9.770000e-144 520.0
8 TraesCS3B01G407900 chr3A 89.333 150 12 3 148 293 624858269 624858418 4.050000e-43 185.0
9 TraesCS3B01G407900 chr3A 89.683 126 9 1 1620 1741 624859777 624859902 8.820000e-35 158.0
10 TraesCS3B01G407900 chr3A 86.000 150 15 4 1 150 624857870 624858013 3.170000e-34 156.0
11 TraesCS3B01G407900 chr3A 94.521 73 4 0 290 362 624858443 624858515 1.940000e-21 113.0
12 TraesCS3B01G407900 chr2A 94.624 279 10 2 360 633 61973141 61972863 6.090000e-116 427.0
13 TraesCS3B01G407900 chr1B 94.624 279 10 2 360 633 85435096 85434818 6.090000e-116 427.0
14 TraesCS3B01G407900 chr1B 81.735 219 31 5 1141 1350 495095020 495095238 8.760000e-40 174.0
15 TraesCS3B01G407900 chr2B 93.728 287 12 3 351 631 198449021 198448735 2.190000e-115 425.0
16 TraesCS3B01G407900 chr5B 94.286 280 11 2 359 633 476018215 476018494 7.880000e-115 424.0
17 TraesCS3B01G407900 chr5B 94.545 275 10 2 362 631 43349084 43348810 1.020000e-113 420.0
18 TraesCS3B01G407900 chr6B 94.265 279 11 2 360 633 687701717 687701439 2.830000e-114 422.0
19 TraesCS3B01G407900 chr6B 94.265 279 11 2 360 633 687720103 687719825 2.830000e-114 422.0
20 TraesCS3B01G407900 chr6B 93.907 279 12 2 360 633 174617797 174617519 1.320000e-112 416.0
21 TraesCS3B01G407900 chr6B 96.875 32 1 0 2106 2137 18331950 18331981 1.000000e-03 54.7
22 TraesCS3B01G407900 chr1D 82.353 221 30 5 1141 1352 371186466 371186686 1.460000e-42 183.0
23 TraesCS3B01G407900 chr1A 76.986 365 54 20 997 1352 470300491 470300834 5.230000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G407900 chr3B 643265207 643267590 2383 False 4403.000000 4403 100.000000 1 2384 1 chr3B.!!$F2 2383
1 TraesCS3B01G407900 chr3D 481710457 481711931 1474 False 513.500000 1565 92.673750 148 1887 4 chr3D.!!$F1 1739
2 TraesCS3B01G407900 chr3A 624857870 624860323 2453 False 411.333333 1336 89.803667 1 2197 6 chr3A.!!$F1 2196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 659 1.067212 CGGCTGTTCTCGTATTAGGCT 59.933 52.381 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2924 0.034186 TTAGTTCGCTCGGAGGGGTA 60.034 55.0 20.27 7.76 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 6.913170 TGTTTTGCAGAATTGGTATCTTCTC 58.087 36.000 0.00 0.00 29.34 2.87
64 65 5.181748 GCAGAATTGGTATCTTCTCAGTGT 58.818 41.667 0.00 0.00 29.34 3.55
71 72 6.861065 TGGTATCTTCTCAGTGTTTTTGAC 57.139 37.500 0.00 0.00 0.00 3.18
101 102 2.814805 ACTGGCCAAGTTGCATATCT 57.185 45.000 7.01 0.00 34.57 1.98
104 105 3.285484 CTGGCCAAGTTGCATATCTTCT 58.715 45.455 7.01 0.00 0.00 2.85
109 110 5.578336 GGCCAAGTTGCATATCTTCTTTTTC 59.422 40.000 0.00 0.00 0.00 2.29
125 126 3.446310 TTTTCTTTGCGGGGAAAGTTC 57.554 42.857 11.60 0.00 34.95 3.01
229 488 5.688823 CAACTACATTGTCAAGCATTCGAA 58.311 37.500 0.00 0.00 33.20 3.71
269 532 7.041576 TGCAATCAATCTCACTAATGTAGATGC 60.042 37.037 0.00 0.00 30.50 3.91
307 601 1.993653 CTCCATCCAGCCTCCACAA 59.006 57.895 0.00 0.00 0.00 3.33
354 648 1.660560 GCATCAATGGCGGCTGTTCT 61.661 55.000 11.43 0.00 0.00 3.01
362 656 1.202371 TGGCGGCTGTTCTCGTATTAG 60.202 52.381 11.43 0.00 0.00 1.73
363 657 1.488527 GCGGCTGTTCTCGTATTAGG 58.511 55.000 0.00 0.00 0.00 2.69
364 658 1.488527 CGGCTGTTCTCGTATTAGGC 58.511 55.000 0.00 0.00 0.00 3.93
365 659 1.067212 CGGCTGTTCTCGTATTAGGCT 59.933 52.381 0.00 0.00 0.00 4.58
366 660 2.474816 GGCTGTTCTCGTATTAGGCTG 58.525 52.381 0.00 0.00 0.00 4.85
367 661 2.474816 GCTGTTCTCGTATTAGGCTGG 58.525 52.381 0.00 0.00 0.00 4.85
368 662 2.159085 GCTGTTCTCGTATTAGGCTGGT 60.159 50.000 0.00 0.00 0.00 4.00
369 663 3.679083 GCTGTTCTCGTATTAGGCTGGTT 60.679 47.826 0.00 0.00 0.00 3.67
370 664 3.857052 TGTTCTCGTATTAGGCTGGTTG 58.143 45.455 0.00 0.00 0.00 3.77
371 665 3.259876 TGTTCTCGTATTAGGCTGGTTGT 59.740 43.478 0.00 0.00 0.00 3.32
372 666 4.463539 TGTTCTCGTATTAGGCTGGTTGTA 59.536 41.667 0.00 0.00 0.00 2.41
373 667 5.047164 TGTTCTCGTATTAGGCTGGTTGTAA 60.047 40.000 0.00 0.00 0.00 2.41
374 668 5.864418 TCTCGTATTAGGCTGGTTGTAAT 57.136 39.130 0.00 0.00 0.00 1.89
375 669 5.597806 TCTCGTATTAGGCTGGTTGTAATG 58.402 41.667 0.00 0.00 0.00 1.90
376 670 4.699637 TCGTATTAGGCTGGTTGTAATGG 58.300 43.478 0.00 0.00 0.00 3.16
377 671 3.813166 CGTATTAGGCTGGTTGTAATGGG 59.187 47.826 0.00 0.00 0.00 4.00
378 672 4.685030 CGTATTAGGCTGGTTGTAATGGGT 60.685 45.833 0.00 0.00 0.00 4.51
379 673 5.453621 CGTATTAGGCTGGTTGTAATGGGTA 60.454 44.000 0.00 0.00 0.00 3.69
380 674 4.497291 TTAGGCTGGTTGTAATGGGTAG 57.503 45.455 0.00 0.00 0.00 3.18
381 675 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
382 676 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
383 677 4.045022 AGGCTGGTTGTAATGGGTAGTAT 58.955 43.478 0.00 0.00 0.00 2.12
384 678 4.102681 AGGCTGGTTGTAATGGGTAGTATC 59.897 45.833 0.00 0.00 0.00 2.24
385 679 4.141574 GGCTGGTTGTAATGGGTAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
386 680 5.456186 GGCTGGTTGTAATGGGTAGTATCAT 60.456 44.000 0.00 0.00 0.00 2.45
387 681 6.239772 GGCTGGTTGTAATGGGTAGTATCATA 60.240 42.308 0.00 0.00 0.00 2.15
388 682 7.221450 GCTGGTTGTAATGGGTAGTATCATAA 58.779 38.462 0.00 0.00 0.00 1.90
389 683 7.387948 GCTGGTTGTAATGGGTAGTATCATAAG 59.612 40.741 0.00 0.00 0.00 1.73
390 684 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
391 685 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
394 688 9.991906 TTGTAATGGGTAGTATCATAAGTTAGC 57.008 33.333 0.00 0.00 0.00 3.09
395 689 9.150028 TGTAATGGGTAGTATCATAAGTTAGCA 57.850 33.333 0.00 0.00 0.00 3.49
398 692 7.849322 TGGGTAGTATCATAAGTTAGCATCA 57.151 36.000 0.00 0.00 0.00 3.07
399 693 8.435931 TGGGTAGTATCATAAGTTAGCATCAT 57.564 34.615 0.00 0.00 0.00 2.45
400 694 8.314021 TGGGTAGTATCATAAGTTAGCATCATG 58.686 37.037 0.00 0.00 0.00 3.07
401 695 7.278868 GGGTAGTATCATAAGTTAGCATCATGC 59.721 40.741 0.00 0.00 45.46 4.06
437 731 8.356000 AGTCTATGATACTACCTTCCTAATGC 57.644 38.462 0.00 0.00 0.00 3.56
438 732 7.950684 AGTCTATGATACTACCTTCCTAATGCA 59.049 37.037 0.00 0.00 0.00 3.96
439 733 8.754080 GTCTATGATACTACCTTCCTAATGCAT 58.246 37.037 0.00 0.00 0.00 3.96
440 734 9.990868 TCTATGATACTACCTTCCTAATGCATA 57.009 33.333 0.00 0.00 0.00 3.14
442 736 8.671987 ATGATACTACCTTCCTAATGCATAGT 57.328 34.615 0.00 0.00 0.00 2.12
443 737 9.769677 ATGATACTACCTTCCTAATGCATAGTA 57.230 33.333 0.00 0.81 0.00 1.82
444 738 9.769677 TGATACTACCTTCCTAATGCATAGTAT 57.230 33.333 11.08 11.08 37.18 2.12
446 740 9.769677 ATACTACCTTCCTAATGCATAGTATCA 57.230 33.333 0.00 0.00 31.76 2.15
447 741 8.671987 ACTACCTTCCTAATGCATAGTATCAT 57.328 34.615 0.00 0.00 0.00 2.45
448 742 9.769677 ACTACCTTCCTAATGCATAGTATCATA 57.230 33.333 0.00 0.00 0.00 2.15
451 745 9.271921 ACCTTCCTAATGCATAGTATCATATGA 57.728 33.333 8.10 8.10 35.54 2.15
489 783 8.607441 TGACTTTATCTATTACCATGCATGAC 57.393 34.615 28.31 0.00 0.00 3.06
490 784 8.210265 TGACTTTATCTATTACCATGCATGACA 58.790 33.333 28.31 11.99 0.00 3.58
491 785 8.383318 ACTTTATCTATTACCATGCATGACAC 57.617 34.615 28.31 0.00 0.00 3.67
492 786 7.992608 ACTTTATCTATTACCATGCATGACACA 59.007 33.333 28.31 9.11 0.00 3.72
493 787 8.922931 TTTATCTATTACCATGCATGACACAT 57.077 30.769 28.31 15.27 0.00 3.21
495 789 7.912056 ATCTATTACCATGCATGACACATAC 57.088 36.000 28.31 0.00 0.00 2.39
496 790 7.066307 TCTATTACCATGCATGACACATACT 57.934 36.000 28.31 8.60 0.00 2.12
497 791 8.189119 TCTATTACCATGCATGACACATACTA 57.811 34.615 28.31 9.19 0.00 1.82
498 792 8.306761 TCTATTACCATGCATGACACATACTAG 58.693 37.037 28.31 16.36 0.00 2.57
499 793 4.760530 ACCATGCATGACACATACTAGT 57.239 40.909 28.31 9.97 0.00 2.57
500 794 4.445453 ACCATGCATGACACATACTAGTG 58.555 43.478 28.31 8.60 44.93 2.74
501 795 4.162131 ACCATGCATGACACATACTAGTGA 59.838 41.667 28.31 0.00 42.05 3.41
502 796 4.748600 CCATGCATGACACATACTAGTGAG 59.251 45.833 28.31 1.13 42.05 3.51
503 797 3.785486 TGCATGACACATACTAGTGAGC 58.215 45.455 5.39 0.00 42.05 4.26
504 798 3.195396 TGCATGACACATACTAGTGAGCA 59.805 43.478 5.39 0.00 42.05 4.26
505 799 4.141869 TGCATGACACATACTAGTGAGCAT 60.142 41.667 5.39 0.00 42.05 3.79
506 800 4.813161 GCATGACACATACTAGTGAGCATT 59.187 41.667 5.39 0.00 42.05 3.56
507 801 5.295292 GCATGACACATACTAGTGAGCATTT 59.705 40.000 5.39 0.00 42.05 2.32
508 802 6.479990 GCATGACACATACTAGTGAGCATTTA 59.520 38.462 5.39 0.00 42.05 1.40
509 803 7.172190 GCATGACACATACTAGTGAGCATTTAT 59.828 37.037 5.39 0.00 42.05 1.40
510 804 9.049523 CATGACACATACTAGTGAGCATTTATT 57.950 33.333 5.39 0.00 42.05 1.40
543 837 4.987963 TCATGATATGATGCTCAACCCT 57.012 40.909 0.00 0.00 33.59 4.34
544 838 4.903054 TCATGATATGATGCTCAACCCTC 58.097 43.478 0.00 0.00 33.59 4.30
545 839 4.596212 TCATGATATGATGCTCAACCCTCT 59.404 41.667 0.00 0.00 33.59 3.69
546 840 4.613925 TGATATGATGCTCAACCCTCTC 57.386 45.455 0.00 0.00 0.00 3.20
547 841 4.229639 TGATATGATGCTCAACCCTCTCT 58.770 43.478 0.00 0.00 0.00 3.10
548 842 4.657504 TGATATGATGCTCAACCCTCTCTT 59.342 41.667 0.00 0.00 0.00 2.85
549 843 5.840693 TGATATGATGCTCAACCCTCTCTTA 59.159 40.000 0.00 0.00 0.00 2.10
550 844 3.895232 TGATGCTCAACCCTCTCTTAC 57.105 47.619 0.00 0.00 0.00 2.34
551 845 3.445008 TGATGCTCAACCCTCTCTTACT 58.555 45.455 0.00 0.00 0.00 2.24
552 846 3.840666 TGATGCTCAACCCTCTCTTACTT 59.159 43.478 0.00 0.00 0.00 2.24
553 847 3.963428 TGCTCAACCCTCTCTTACTTC 57.037 47.619 0.00 0.00 0.00 3.01
554 848 3.239449 TGCTCAACCCTCTCTTACTTCA 58.761 45.455 0.00 0.00 0.00 3.02
555 849 3.840666 TGCTCAACCCTCTCTTACTTCAT 59.159 43.478 0.00 0.00 0.00 2.57
556 850 4.287067 TGCTCAACCCTCTCTTACTTCATT 59.713 41.667 0.00 0.00 0.00 2.57
557 851 5.221925 TGCTCAACCCTCTCTTACTTCATTT 60.222 40.000 0.00 0.00 0.00 2.32
558 852 6.013725 TGCTCAACCCTCTCTTACTTCATTTA 60.014 38.462 0.00 0.00 0.00 1.40
559 853 6.879458 GCTCAACCCTCTCTTACTTCATTTAA 59.121 38.462 0.00 0.00 0.00 1.52
560 854 7.554476 GCTCAACCCTCTCTTACTTCATTTAAT 59.446 37.037 0.00 0.00 0.00 1.40
561 855 9.454859 CTCAACCCTCTCTTACTTCATTTAATT 57.545 33.333 0.00 0.00 0.00 1.40
562 856 9.449719 TCAACCCTCTCTTACTTCATTTAATTC 57.550 33.333 0.00 0.00 0.00 2.17
563 857 9.454859 CAACCCTCTCTTACTTCATTTAATTCT 57.545 33.333 0.00 0.00 0.00 2.40
575 869 9.911788 ACTTCATTTAATTCTATGTCACCTCAT 57.088 29.630 0.00 0.00 0.00 2.90
577 871 9.904198 TTCATTTAATTCTATGTCACCTCATCA 57.096 29.630 0.00 0.00 0.00 3.07
578 872 9.904198 TCATTTAATTCTATGTCACCTCATCAA 57.096 29.630 0.00 0.00 0.00 2.57
581 875 9.739276 TTTAATTCTATGTCACCTCATCAAAGT 57.261 29.630 0.00 0.00 0.00 2.66
582 876 9.739276 TTAATTCTATGTCACCTCATCAAAGTT 57.261 29.630 0.00 0.00 0.00 2.66
583 877 7.621428 ATTCTATGTCACCTCATCAAAGTTG 57.379 36.000 0.00 0.00 0.00 3.16
584 878 6.114187 TCTATGTCACCTCATCAAAGTTGT 57.886 37.500 0.00 0.00 0.00 3.32
585 879 6.166279 TCTATGTCACCTCATCAAAGTTGTC 58.834 40.000 0.00 0.00 0.00 3.18
586 880 4.422073 TGTCACCTCATCAAAGTTGTCT 57.578 40.909 0.00 0.00 0.00 3.41
587 881 5.545063 TGTCACCTCATCAAAGTTGTCTA 57.455 39.130 0.00 0.00 0.00 2.59
588 882 5.541845 TGTCACCTCATCAAAGTTGTCTAG 58.458 41.667 0.00 0.00 0.00 2.43
589 883 5.070446 TGTCACCTCATCAAAGTTGTCTAGT 59.930 40.000 0.00 0.00 0.00 2.57
590 884 5.992217 GTCACCTCATCAAAGTTGTCTAGTT 59.008 40.000 0.00 0.00 0.00 2.24
591 885 5.991606 TCACCTCATCAAAGTTGTCTAGTTG 59.008 40.000 0.00 0.00 0.00 3.16
592 886 5.180117 CACCTCATCAAAGTTGTCTAGTTGG 59.820 44.000 0.00 0.00 0.00 3.77
593 887 4.154918 CCTCATCAAAGTTGTCTAGTTGGC 59.845 45.833 0.00 0.00 0.00 4.52
594 888 4.713553 TCATCAAAGTTGTCTAGTTGGCA 58.286 39.130 0.00 0.00 0.00 4.92
595 889 5.316167 TCATCAAAGTTGTCTAGTTGGCAT 58.684 37.500 0.00 0.00 0.00 4.40
596 890 5.181811 TCATCAAAGTTGTCTAGTTGGCATG 59.818 40.000 0.00 0.00 0.00 4.06
597 891 3.253188 TCAAAGTTGTCTAGTTGGCATGC 59.747 43.478 9.90 9.90 0.00 4.06
598 892 2.566833 AGTTGTCTAGTTGGCATGCA 57.433 45.000 21.36 2.54 0.00 3.96
599 893 3.077484 AGTTGTCTAGTTGGCATGCAT 57.923 42.857 21.36 4.57 0.00 3.96
600 894 2.751259 AGTTGTCTAGTTGGCATGCATG 59.249 45.455 22.70 22.70 0.00 4.06
601 895 2.749076 GTTGTCTAGTTGGCATGCATGA 59.251 45.455 30.64 7.50 0.00 3.07
602 896 3.286329 TGTCTAGTTGGCATGCATGAT 57.714 42.857 30.64 11.73 0.00 2.45
603 897 4.420522 TGTCTAGTTGGCATGCATGATA 57.579 40.909 30.64 14.66 0.00 2.15
604 898 4.129380 TGTCTAGTTGGCATGCATGATAC 58.871 43.478 30.64 21.28 0.00 2.24
605 899 4.141642 TGTCTAGTTGGCATGCATGATACT 60.142 41.667 30.64 26.11 0.00 2.12
606 900 5.070313 TGTCTAGTTGGCATGCATGATACTA 59.930 40.000 30.64 25.87 0.00 1.82
607 901 6.169094 GTCTAGTTGGCATGCATGATACTAT 58.831 40.000 30.64 12.60 0.00 2.12
608 902 6.091849 GTCTAGTTGGCATGCATGATACTATG 59.908 42.308 30.64 20.78 0.00 2.23
609 903 4.976864 AGTTGGCATGCATGATACTATGA 58.023 39.130 30.64 3.60 0.00 2.15
610 904 5.567430 AGTTGGCATGCATGATACTATGAT 58.433 37.500 30.64 5.24 0.00 2.45
611 905 6.714278 AGTTGGCATGCATGATACTATGATA 58.286 36.000 30.64 0.00 0.00 2.15
612 906 6.596888 AGTTGGCATGCATGATACTATGATAC 59.403 38.462 30.64 10.28 0.00 2.24
613 907 6.303903 TGGCATGCATGATACTATGATACT 57.696 37.500 30.64 0.00 0.00 2.12
614 908 6.343703 TGGCATGCATGATACTATGATACTC 58.656 40.000 30.64 6.75 0.00 2.59
615 909 5.757320 GGCATGCATGATACTATGATACTCC 59.243 44.000 30.64 12.18 0.00 3.85
616 910 5.757320 GCATGCATGATACTATGATACTCCC 59.243 44.000 30.64 2.07 0.00 4.30
617 911 6.631088 GCATGCATGATACTATGATACTCCCA 60.631 42.308 30.64 0.00 0.00 4.37
618 912 7.506971 CATGCATGATACTATGATACTCCCAT 58.493 38.462 22.59 0.00 0.00 4.00
619 913 7.500629 TGCATGATACTATGATACTCCCATT 57.499 36.000 0.00 0.00 0.00 3.16
620 914 8.608185 TGCATGATACTATGATACTCCCATTA 57.392 34.615 0.00 0.00 0.00 1.90
621 915 8.478066 TGCATGATACTATGATACTCCCATTAC 58.522 37.037 0.00 0.00 0.00 1.89
622 916 8.478066 GCATGATACTATGATACTCCCATTACA 58.522 37.037 0.00 0.00 0.00 2.41
625 919 8.812972 TGATACTATGATACTCCCATTACAACC 58.187 37.037 0.00 0.00 0.00 3.77
626 920 8.736097 ATACTATGATACTCCCATTACAACCA 57.264 34.615 0.00 0.00 0.00 3.67
627 921 7.067496 ACTATGATACTCCCATTACAACCAG 57.933 40.000 0.00 0.00 0.00 4.00
628 922 4.150897 TGATACTCCCATTACAACCAGC 57.849 45.455 0.00 0.00 0.00 4.85
629 923 3.118038 TGATACTCCCATTACAACCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
630 924 1.372501 ACTCCCATTACAACCAGCCT 58.627 50.000 0.00 0.00 0.00 4.58
631 925 1.710809 ACTCCCATTACAACCAGCCTT 59.289 47.619 0.00 0.00 0.00 4.35
632 926 2.916934 ACTCCCATTACAACCAGCCTTA 59.083 45.455 0.00 0.00 0.00 2.69
674 971 6.607600 CCATCCTCCTCCTCATTATATAACGA 59.392 42.308 0.00 0.00 0.00 3.85
702 999 1.869767 GGAGAGGCGCATGACAAATAG 59.130 52.381 10.83 0.00 0.00 1.73
703 1000 2.555199 GAGAGGCGCATGACAAATAGT 58.445 47.619 10.83 0.00 0.00 2.12
735 1032 2.651135 TAGTTATACGCAACCACGCA 57.349 45.000 0.00 0.00 36.19 5.24
855 1158 3.188786 GGCTCGTGCGATGTGTCC 61.189 66.667 3.02 0.00 40.82 4.02
893 1198 8.782137 TCAATATATATATGGCAGCTCCTGTA 57.218 34.615 6.00 0.00 33.43 2.74
974 1284 2.917227 TGCGTGCAGTGAGAGGGA 60.917 61.111 0.00 0.00 0.00 4.20
977 1287 3.366629 GTGCAGTGAGAGGGACGA 58.633 61.111 0.00 0.00 0.00 4.20
982 1292 2.041686 AGTGAGAGGGACGACGAGC 61.042 63.158 0.00 0.00 0.00 5.03
985 1295 4.719106 AGAGGGACGACGAGCGGT 62.719 66.667 0.00 0.00 46.49 5.68
1293 1608 1.908065 TGATGTACGTGATGCTGTCG 58.092 50.000 0.00 0.00 0.00 4.35
1428 1750 1.199327 CCTTCAAGTCGTCTCGTAGCA 59.801 52.381 0.00 0.00 0.00 3.49
1455 1777 5.452302 GCCATTCGTGATCGAGTTAATTTTG 59.548 40.000 0.00 0.00 46.81 2.44
1465 1787 8.282592 TGATCGAGTTAATTTTGTTGACTTCTG 58.717 33.333 0.00 0.00 0.00 3.02
1471 1793 5.774498 AATTTTGTTGACTTCTGGGAGAC 57.226 39.130 0.00 0.00 0.00 3.36
1472 1794 2.526304 TTGTTGACTTCTGGGAGACG 57.474 50.000 0.00 0.00 0.00 4.18
1474 1796 2.036387 TGTTGACTTCTGGGAGACGAA 58.964 47.619 0.00 0.00 0.00 3.85
1475 1797 2.432874 TGTTGACTTCTGGGAGACGAAA 59.567 45.455 0.00 0.00 0.00 3.46
1476 1798 3.060602 GTTGACTTCTGGGAGACGAAAG 58.939 50.000 0.00 0.00 0.00 2.62
1478 1800 2.558795 TGACTTCTGGGAGACGAAAGAG 59.441 50.000 0.00 0.00 0.00 2.85
1479 1801 2.820787 GACTTCTGGGAGACGAAAGAGA 59.179 50.000 0.00 0.00 0.00 3.10
1480 1802 2.823154 ACTTCTGGGAGACGAAAGAGAG 59.177 50.000 0.00 0.00 0.00 3.20
1482 1804 3.374042 TCTGGGAGACGAAAGAGAGAT 57.626 47.619 0.00 0.00 0.00 2.75
1483 1805 3.020274 TCTGGGAGACGAAAGAGAGATG 58.980 50.000 0.00 0.00 0.00 2.90
1484 1806 1.478510 TGGGAGACGAAAGAGAGATGC 59.521 52.381 0.00 0.00 0.00 3.91
1485 1807 1.202475 GGGAGACGAAAGAGAGATGCC 60.202 57.143 0.00 0.00 0.00 4.40
1486 1808 1.754226 GGAGACGAAAGAGAGATGCCT 59.246 52.381 0.00 0.00 0.00 4.75
1487 1809 2.952978 GGAGACGAAAGAGAGATGCCTA 59.047 50.000 0.00 0.00 0.00 3.93
1488 1810 3.004315 GGAGACGAAAGAGAGATGCCTAG 59.996 52.174 0.00 0.00 0.00 3.02
1489 1811 3.626930 AGACGAAAGAGAGATGCCTAGT 58.373 45.455 0.00 0.00 0.00 2.57
1491 1813 4.464597 AGACGAAAGAGAGATGCCTAGTTT 59.535 41.667 0.00 0.00 0.00 2.66
1627 2212 7.149047 CGCGTCTTTTGCAATTTAAGTATTTGA 60.149 33.333 0.00 0.00 0.00 2.69
1722 2311 1.298014 CTCCTGTCCCTTGTCCTGC 59.702 63.158 0.00 0.00 0.00 4.85
1724 2313 2.528818 CCTGTCCCTTGTCCTGCCA 61.529 63.158 0.00 0.00 0.00 4.92
1725 2314 1.687612 CTGTCCCTTGTCCTGCCAT 59.312 57.895 0.00 0.00 0.00 4.40
1726 2315 0.911769 CTGTCCCTTGTCCTGCCATA 59.088 55.000 0.00 0.00 0.00 2.74
1727 2316 1.492176 CTGTCCCTTGTCCTGCCATAT 59.508 52.381 0.00 0.00 0.00 1.78
1728 2317 1.490490 TGTCCCTTGTCCTGCCATATC 59.510 52.381 0.00 0.00 0.00 1.63
1729 2318 1.490490 GTCCCTTGTCCTGCCATATCA 59.510 52.381 0.00 0.00 0.00 2.15
1730 2319 1.770658 TCCCTTGTCCTGCCATATCAG 59.229 52.381 0.00 0.00 0.00 2.90
1731 2320 1.602311 CCTTGTCCTGCCATATCAGC 58.398 55.000 0.00 0.00 32.87 4.26
1732 2321 1.134007 CCTTGTCCTGCCATATCAGCA 60.134 52.381 0.00 0.00 38.82 4.41
1733 2322 1.945394 CTTGTCCTGCCATATCAGCAC 59.055 52.381 0.00 0.00 36.01 4.40
1734 2323 0.911053 TGTCCTGCCATATCAGCACA 59.089 50.000 0.00 0.00 32.74 4.57
1735 2324 1.281577 TGTCCTGCCATATCAGCACAA 59.718 47.619 0.00 0.00 32.28 3.33
1736 2325 2.290832 TGTCCTGCCATATCAGCACAAA 60.291 45.455 0.00 0.00 32.28 2.83
1737 2326 2.954318 GTCCTGCCATATCAGCACAAAT 59.046 45.455 0.00 0.00 36.01 2.32
1738 2327 4.136796 GTCCTGCCATATCAGCACAAATA 58.863 43.478 0.00 0.00 36.01 1.40
1739 2328 4.763793 GTCCTGCCATATCAGCACAAATAT 59.236 41.667 0.00 0.00 36.01 1.28
1740 2329 4.763279 TCCTGCCATATCAGCACAAATATG 59.237 41.667 0.00 0.00 36.01 1.78
1741 2330 4.521639 CCTGCCATATCAGCACAAATATGT 59.478 41.667 0.00 0.00 41.61 2.29
1742 2331 5.010314 CCTGCCATATCAGCACAAATATGTT 59.990 40.000 0.00 0.00 37.82 2.71
1743 2332 6.461927 CCTGCCATATCAGCACAAATATGTTT 60.462 38.462 0.00 0.00 37.82 2.83
1744 2333 6.876155 TGCCATATCAGCACAAATATGTTTT 58.124 32.000 0.00 0.00 37.82 2.43
1745 2334 7.329499 TGCCATATCAGCACAAATATGTTTTT 58.671 30.769 0.00 0.00 37.82 1.94
1746 2335 7.492020 TGCCATATCAGCACAAATATGTTTTTC 59.508 33.333 0.00 0.00 37.82 2.29
1747 2336 7.707893 GCCATATCAGCACAAATATGTTTTTCT 59.292 33.333 0.00 0.00 37.82 2.52
1748 2337 9.590451 CCATATCAGCACAAATATGTTTTTCTT 57.410 29.630 0.00 0.00 37.82 2.52
1837 2429 4.652421 TGAACATTGTGCATTGAGTTGT 57.348 36.364 0.00 0.00 0.00 3.32
1838 2430 5.764487 TGAACATTGTGCATTGAGTTGTA 57.236 34.783 0.00 0.00 0.00 2.41
1899 2491 8.536175 TCATTAAAAGGGTTTTCCACAATATCC 58.464 33.333 0.00 0.00 42.91 2.59
1952 2551 6.906157 TCCTTGAGGTATATAAACCCTACG 57.094 41.667 0.00 0.00 40.71 3.51
1966 2565 8.866970 ATAAACCCTACGAAATTTACCTTCAA 57.133 30.769 0.00 0.00 0.00 2.69
1969 2568 4.095932 CCCTACGAAATTTACCTTCAAGCC 59.904 45.833 0.00 0.00 0.00 4.35
1971 2570 2.486592 ACGAAATTTACCTTCAAGCCCG 59.513 45.455 0.00 0.00 0.00 6.13
2027 2626 5.042593 TGATGTTCAATGCAAACTGTCAAC 58.957 37.500 0.00 0.00 0.00 3.18
2039 2638 5.342433 CAAACTGTCAACAAAAGAGCATCA 58.658 37.500 0.00 0.00 37.82 3.07
2048 2647 5.796424 ACAAAAGAGCATCAAATTGAGGT 57.204 34.783 9.43 3.55 37.82 3.85
2058 2657 6.832384 AGCATCAAATTGAGGTCATCTTACAT 59.168 34.615 9.43 0.00 29.72 2.29
2070 2669 8.511748 AGGTCATCTTACATCCATAATTAGGT 57.488 34.615 0.00 0.00 0.00 3.08
2079 2678 9.913310 TTACATCCATAATTAGGTTTCATGACA 57.087 29.630 0.00 0.00 0.00 3.58
2087 2686 7.595819 AATTAGGTTTCATGACAAAAGACCA 57.404 32.000 0.00 0.00 0.00 4.02
2092 2691 2.217750 TCATGACAAAAGACCACCACG 58.782 47.619 0.00 0.00 0.00 4.94
2094 2693 0.393132 TGACAAAAGACCACCACGCA 60.393 50.000 0.00 0.00 0.00 5.24
2104 2703 2.151202 ACCACCACGCATTAAGAGTTG 58.849 47.619 0.00 0.00 0.00 3.16
2132 2731 2.433970 AGAGCAACTCTAGCAGATTCCC 59.566 50.000 0.00 0.00 39.28 3.97
2135 2734 4.033709 AGCAACTCTAGCAGATTCCCTAA 58.966 43.478 0.00 0.00 0.00 2.69
2149 2748 1.073098 CCCTAAACCCAACACCCTCT 58.927 55.000 0.00 0.00 0.00 3.69
2161 2760 6.011981 ACCCAACACCCTCTAAGAAATTATCA 60.012 38.462 0.00 0.00 0.00 2.15
2197 2796 8.622948 AAACTCACTCTAACAAATTCCCTAAG 57.377 34.615 0.00 0.00 0.00 2.18
2198 2797 7.317722 ACTCACTCTAACAAATTCCCTAAGT 57.682 36.000 0.00 0.00 0.00 2.24
2199 2798 7.746703 ACTCACTCTAACAAATTCCCTAAGTT 58.253 34.615 0.00 0.00 0.00 2.66
2200 2799 7.661847 ACTCACTCTAACAAATTCCCTAAGTTG 59.338 37.037 0.00 0.00 44.26 3.16
2201 2800 6.430000 TCACTCTAACAAATTCCCTAAGTTGC 59.570 38.462 0.00 0.00 42.88 4.17
2202 2801 5.710567 ACTCTAACAAATTCCCTAAGTTGCC 59.289 40.000 0.00 0.00 42.88 4.52
2203 2802 5.636123 TCTAACAAATTCCCTAAGTTGCCA 58.364 37.500 0.00 0.00 42.88 4.92
2204 2803 6.252995 TCTAACAAATTCCCTAAGTTGCCAT 58.747 36.000 0.00 0.00 42.88 4.40
2205 2804 4.806640 ACAAATTCCCTAAGTTGCCATG 57.193 40.909 0.00 0.00 42.88 3.66
2206 2805 4.159557 ACAAATTCCCTAAGTTGCCATGT 58.840 39.130 0.00 0.00 42.88 3.21
2207 2806 5.329399 ACAAATTCCCTAAGTTGCCATGTA 58.671 37.500 0.00 0.00 42.88 2.29
2208 2807 5.957774 ACAAATTCCCTAAGTTGCCATGTAT 59.042 36.000 0.00 0.00 42.88 2.29
2209 2808 6.096846 ACAAATTCCCTAAGTTGCCATGTATC 59.903 38.462 0.00 0.00 42.88 2.24
2210 2809 3.857157 TCCCTAAGTTGCCATGTATCC 57.143 47.619 0.00 0.00 0.00 2.59
2211 2810 2.441750 TCCCTAAGTTGCCATGTATCCC 59.558 50.000 0.00 0.00 0.00 3.85
2212 2811 2.174639 CCCTAAGTTGCCATGTATCCCA 59.825 50.000 0.00 0.00 0.00 4.37
2213 2812 3.372566 CCCTAAGTTGCCATGTATCCCAA 60.373 47.826 0.00 0.00 0.00 4.12
2214 2813 4.277476 CCTAAGTTGCCATGTATCCCAAA 58.723 43.478 0.00 0.00 0.00 3.28
2215 2814 4.709397 CCTAAGTTGCCATGTATCCCAAAA 59.291 41.667 0.00 0.00 0.00 2.44
2216 2815 4.806640 AAGTTGCCATGTATCCCAAAAG 57.193 40.909 0.00 0.00 0.00 2.27
2217 2816 2.497273 AGTTGCCATGTATCCCAAAAGC 59.503 45.455 0.00 0.00 0.00 3.51
2218 2817 2.497273 GTTGCCATGTATCCCAAAAGCT 59.503 45.455 0.00 0.00 0.00 3.74
2219 2818 2.818921 TGCCATGTATCCCAAAAGCTT 58.181 42.857 0.00 0.00 0.00 3.74
2220 2819 3.172339 TGCCATGTATCCCAAAAGCTTT 58.828 40.909 5.69 5.69 0.00 3.51
2221 2820 3.195396 TGCCATGTATCCCAAAAGCTTTC 59.805 43.478 13.10 0.00 0.00 2.62
2222 2821 3.430790 GCCATGTATCCCAAAAGCTTTCC 60.431 47.826 13.10 0.00 0.00 3.13
2223 2822 4.026052 CCATGTATCCCAAAAGCTTTCCT 58.974 43.478 13.10 0.00 0.00 3.36
2224 2823 5.200483 CCATGTATCCCAAAAGCTTTCCTA 58.800 41.667 13.10 0.00 0.00 2.94
2225 2824 5.656416 CCATGTATCCCAAAAGCTTTCCTAA 59.344 40.000 13.10 0.00 0.00 2.69
2226 2825 6.154363 CCATGTATCCCAAAAGCTTTCCTAAA 59.846 38.462 13.10 0.00 0.00 1.85
2227 2826 7.147672 CCATGTATCCCAAAAGCTTTCCTAAAT 60.148 37.037 13.10 5.82 0.00 1.40
2228 2827 7.169158 TGTATCCCAAAAGCTTTCCTAAATG 57.831 36.000 13.10 5.74 0.00 2.32
2229 2828 4.535526 TCCCAAAAGCTTTCCTAAATGC 57.464 40.909 13.10 0.00 36.15 3.56
2230 2829 4.159557 TCCCAAAAGCTTTCCTAAATGCT 58.840 39.130 13.10 0.00 45.06 3.79
2231 2830 5.329399 TCCCAAAAGCTTTCCTAAATGCTA 58.671 37.500 13.10 0.00 43.06 3.49
2232 2831 5.185056 TCCCAAAAGCTTTCCTAAATGCTAC 59.815 40.000 13.10 0.00 43.06 3.58
2233 2832 5.047377 CCCAAAAGCTTTCCTAAATGCTACA 60.047 40.000 13.10 0.00 43.06 2.74
2234 2833 6.095377 CCAAAAGCTTTCCTAAATGCTACAG 58.905 40.000 13.10 0.00 43.06 2.74
2235 2834 6.071952 CCAAAAGCTTTCCTAAATGCTACAGA 60.072 38.462 13.10 0.00 43.06 3.41
2236 2835 7.370383 CAAAAGCTTTCCTAAATGCTACAGAA 58.630 34.615 13.10 0.00 43.06 3.02
2237 2836 6.502136 AAGCTTTCCTAAATGCTACAGAAC 57.498 37.500 0.00 0.00 43.06 3.01
2238 2837 4.944317 AGCTTTCCTAAATGCTACAGAACC 59.056 41.667 0.00 0.00 42.32 3.62
2239 2838 4.201822 GCTTTCCTAAATGCTACAGAACCG 60.202 45.833 0.00 0.00 33.83 4.44
2240 2839 4.811969 TTCCTAAATGCTACAGAACCGA 57.188 40.909 0.00 0.00 0.00 4.69
2241 2840 4.119442 TCCTAAATGCTACAGAACCGAC 57.881 45.455 0.00 0.00 0.00 4.79
2242 2841 2.858344 CCTAAATGCTACAGAACCGACG 59.142 50.000 0.00 0.00 0.00 5.12
2243 2842 2.450609 AAATGCTACAGAACCGACGT 57.549 45.000 0.00 0.00 0.00 4.34
2244 2843 2.450609 AATGCTACAGAACCGACGTT 57.549 45.000 0.00 0.00 33.88 3.99
2256 2855 4.954442 GAACCGACGTTCAGATTTTTAGG 58.046 43.478 0.00 0.00 46.49 2.69
2257 2856 3.332034 ACCGACGTTCAGATTTTTAGGG 58.668 45.455 0.00 0.00 0.00 3.53
2258 2857 3.007182 ACCGACGTTCAGATTTTTAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2259 2858 3.617263 CCGACGTTCAGATTTTTAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
2260 2859 4.243270 CGACGTTCAGATTTTTAGGGAGT 58.757 43.478 0.00 0.00 0.00 3.85
2261 2860 4.689345 CGACGTTCAGATTTTTAGGGAGTT 59.311 41.667 0.00 0.00 0.00 3.01
2262 2861 5.163982 CGACGTTCAGATTTTTAGGGAGTTC 60.164 44.000 0.00 0.00 0.00 3.01
2263 2862 5.001874 ACGTTCAGATTTTTAGGGAGTTCC 58.998 41.667 0.00 0.00 0.00 3.62
2264 2863 4.092968 CGTTCAGATTTTTAGGGAGTTCCG 59.907 45.833 0.00 0.00 41.52 4.30
2265 2864 5.243207 GTTCAGATTTTTAGGGAGTTCCGA 58.757 41.667 0.00 0.00 41.52 4.55
2266 2865 5.086104 TCAGATTTTTAGGGAGTTCCGAG 57.914 43.478 0.00 0.00 41.52 4.63
2267 2866 3.623510 CAGATTTTTAGGGAGTTCCGAGC 59.376 47.826 0.00 0.00 41.52 5.03
2268 2867 2.484742 TTTTTAGGGAGTTCCGAGCC 57.515 50.000 0.00 0.00 41.52 4.70
2269 2868 1.354101 TTTTAGGGAGTTCCGAGCCA 58.646 50.000 0.00 0.00 41.52 4.75
2270 2869 1.354101 TTTAGGGAGTTCCGAGCCAA 58.646 50.000 0.00 0.00 41.52 4.52
2271 2870 1.580059 TTAGGGAGTTCCGAGCCAAT 58.420 50.000 0.00 0.00 41.52 3.16
2272 2871 0.830648 TAGGGAGTTCCGAGCCAATG 59.169 55.000 0.00 0.00 41.52 2.82
2273 2872 2.115291 GGGAGTTCCGAGCCAATGC 61.115 63.158 0.00 0.00 36.71 3.56
2274 2873 2.115291 GGAGTTCCGAGCCAATGCC 61.115 63.158 0.00 0.00 38.69 4.40
2275 2874 2.044946 AGTTCCGAGCCAATGCCC 60.045 61.111 0.00 0.00 38.69 5.36
2276 2875 2.044946 GTTCCGAGCCAATGCCCT 60.045 61.111 0.00 0.00 38.69 5.19
2277 2876 2.115291 GTTCCGAGCCAATGCCCTC 61.115 63.158 0.00 0.00 38.69 4.30
2278 2877 2.601702 TTCCGAGCCAATGCCCTCA 61.602 57.895 0.00 0.00 38.69 3.86
2279 2878 2.515523 CCGAGCCAATGCCCTCAG 60.516 66.667 0.00 0.00 38.69 3.35
2280 2879 2.515523 CGAGCCAATGCCCTCAGG 60.516 66.667 0.00 0.00 38.69 3.86
2290 2889 3.461773 CCCTCAGGCACGTCGGAT 61.462 66.667 0.00 0.00 0.00 4.18
2291 2890 2.105128 CCTCAGGCACGTCGGATC 59.895 66.667 0.00 0.00 0.00 3.36
2292 2891 2.105128 CTCAGGCACGTCGGATCC 59.895 66.667 0.00 0.00 0.00 3.36
2293 2892 3.432051 CTCAGGCACGTCGGATCCC 62.432 68.421 6.06 0.00 0.00 3.85
2303 2902 2.202878 CGGATCCCGCACACGAAT 60.203 61.111 6.06 0.00 41.17 3.34
2304 2903 2.237751 CGGATCCCGCACACGAATC 61.238 63.158 6.06 0.00 41.17 2.52
2305 2904 1.887707 GGATCCCGCACACGAATCC 60.888 63.158 0.00 0.00 43.93 3.01
2306 2905 1.144057 GATCCCGCACACGAATCCT 59.856 57.895 0.00 0.00 43.93 3.24
2307 2906 0.387929 GATCCCGCACACGAATCCTA 59.612 55.000 0.00 0.00 43.93 2.94
2308 2907 0.828022 ATCCCGCACACGAATCCTAA 59.172 50.000 0.00 0.00 43.93 2.69
2309 2908 0.609151 TCCCGCACACGAATCCTAAA 59.391 50.000 0.00 0.00 43.93 1.85
2310 2909 1.006832 CCCGCACACGAATCCTAAAG 58.993 55.000 0.00 0.00 43.93 1.85
2311 2910 0.373716 CCGCACACGAATCCTAAAGC 59.626 55.000 0.00 0.00 43.93 3.51
2312 2911 0.373716 CGCACACGAATCCTAAAGCC 59.626 55.000 0.00 0.00 43.93 4.35
2313 2912 1.739067 GCACACGAATCCTAAAGCCT 58.261 50.000 0.00 0.00 0.00 4.58
2314 2913 2.084546 GCACACGAATCCTAAAGCCTT 58.915 47.619 0.00 0.00 0.00 4.35
2315 2914 2.488153 GCACACGAATCCTAAAGCCTTT 59.512 45.455 0.00 0.00 0.00 3.11
2316 2915 3.670627 GCACACGAATCCTAAAGCCTTTG 60.671 47.826 0.00 0.00 0.00 2.77
2317 2916 2.488153 ACACGAATCCTAAAGCCTTTGC 59.512 45.455 0.00 0.00 37.95 3.68
2329 2928 1.383523 GCCTTTGCTCTCACATACCC 58.616 55.000 0.00 0.00 33.53 3.69
2330 2929 2.019156 GCCTTTGCTCTCACATACCCC 61.019 57.143 0.00 0.00 33.53 4.95
2331 2930 1.561542 CCTTTGCTCTCACATACCCCT 59.438 52.381 0.00 0.00 0.00 4.79
2332 2931 2.420687 CCTTTGCTCTCACATACCCCTC 60.421 54.545 0.00 0.00 0.00 4.30
2333 2932 1.204146 TTGCTCTCACATACCCCTCC 58.796 55.000 0.00 0.00 0.00 4.30
2334 2933 1.043116 TGCTCTCACATACCCCTCCG 61.043 60.000 0.00 0.00 0.00 4.63
2335 2934 0.755698 GCTCTCACATACCCCTCCGA 60.756 60.000 0.00 0.00 0.00 4.55
2336 2935 1.323412 CTCTCACATACCCCTCCGAG 58.677 60.000 0.00 0.00 0.00 4.63
2337 2936 0.755698 TCTCACATACCCCTCCGAGC 60.756 60.000 0.00 0.00 0.00 5.03
2338 2937 2.076622 CTCACATACCCCTCCGAGCG 62.077 65.000 0.00 0.00 0.00 5.03
2339 2938 2.125326 CACATACCCCTCCGAGCGA 61.125 63.158 0.00 0.00 0.00 4.93
2340 2939 1.380785 ACATACCCCTCCGAGCGAA 60.381 57.895 0.00 0.00 0.00 4.70
2341 2940 1.067582 CATACCCCTCCGAGCGAAC 59.932 63.158 0.00 0.00 0.00 3.95
2342 2941 1.076192 ATACCCCTCCGAGCGAACT 60.076 57.895 0.00 0.00 0.00 3.01
2343 2942 0.184451 ATACCCCTCCGAGCGAACTA 59.816 55.000 0.00 0.00 0.00 2.24
2344 2943 0.034186 TACCCCTCCGAGCGAACTAA 60.034 55.000 0.00 0.00 0.00 2.24
2345 2944 1.321074 ACCCCTCCGAGCGAACTAAG 61.321 60.000 0.00 0.00 0.00 2.18
2346 2945 1.035932 CCCCTCCGAGCGAACTAAGA 61.036 60.000 0.00 0.00 0.00 2.10
2347 2946 0.382515 CCCTCCGAGCGAACTAAGAG 59.617 60.000 0.00 0.00 0.00 2.85
2348 2947 0.248702 CCTCCGAGCGAACTAAGAGC 60.249 60.000 0.00 0.00 0.00 4.09
2349 2948 0.248702 CTCCGAGCGAACTAAGAGCC 60.249 60.000 0.00 0.00 0.00 4.70
2350 2949 1.586564 CCGAGCGAACTAAGAGCCG 60.587 63.158 0.00 0.00 0.00 5.52
2351 2950 1.586564 CGAGCGAACTAAGAGCCGG 60.587 63.158 0.00 0.00 0.00 6.13
2352 2951 1.878975 GAGCGAACTAAGAGCCGGC 60.879 63.158 21.89 21.89 0.00 6.13
2353 2952 3.255379 GCGAACTAAGAGCCGGCG 61.255 66.667 23.20 9.03 0.00 6.46
2354 2953 2.582498 CGAACTAAGAGCCGGCGG 60.582 66.667 24.35 24.35 0.00 6.13
2365 2964 2.437716 CCGGCGGCACTAAATGGT 60.438 61.111 15.42 0.00 0.00 3.55
2366 2965 2.043980 CCGGCGGCACTAAATGGTT 61.044 57.895 15.42 0.00 0.00 3.67
2367 2966 1.427819 CGGCGGCACTAAATGGTTC 59.572 57.895 10.53 0.00 0.00 3.62
2368 2967 1.302383 CGGCGGCACTAAATGGTTCA 61.302 55.000 10.53 0.00 0.00 3.18
2369 2968 0.170339 GGCGGCACTAAATGGTTCAC 59.830 55.000 3.07 0.00 0.00 3.18
2370 2969 1.165270 GCGGCACTAAATGGTTCACT 58.835 50.000 0.00 0.00 0.00 3.41
2371 2970 1.539827 GCGGCACTAAATGGTTCACTT 59.460 47.619 0.00 0.00 0.00 3.16
2372 2971 2.745281 GCGGCACTAAATGGTTCACTTA 59.255 45.455 0.00 0.00 0.00 2.24
2373 2972 3.181510 GCGGCACTAAATGGTTCACTTAG 60.182 47.826 0.00 0.00 0.00 2.18
2374 2973 4.000988 CGGCACTAAATGGTTCACTTAGT 58.999 43.478 0.00 0.00 36.53 2.24
2375 2974 5.172934 CGGCACTAAATGGTTCACTTAGTA 58.827 41.667 2.19 0.00 34.81 1.82
2376 2975 5.815740 CGGCACTAAATGGTTCACTTAGTAT 59.184 40.000 2.19 0.00 34.81 2.12
2377 2976 6.238103 CGGCACTAAATGGTTCACTTAGTATG 60.238 42.308 2.19 0.00 34.81 2.39
2378 2977 6.821665 GGCACTAAATGGTTCACTTAGTATGA 59.178 38.462 2.19 0.00 34.81 2.15
2379 2978 7.201617 GGCACTAAATGGTTCACTTAGTATGAC 60.202 40.741 2.19 0.00 34.81 3.06
2380 2979 7.464178 GCACTAAATGGTTCACTTAGTATGACG 60.464 40.741 2.19 0.00 34.81 4.35
2381 2980 7.758076 CACTAAATGGTTCACTTAGTATGACGA 59.242 37.037 2.19 0.00 34.81 4.20
2382 2981 6.963049 AAATGGTTCACTTAGTATGACGAC 57.037 37.500 0.00 0.00 0.00 4.34
2383 2982 4.087510 TGGTTCACTTAGTATGACGACG 57.912 45.455 0.00 0.00 0.00 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.528489 AAAATACAGCCTCTTTTTATTGACCTA 57.472 29.630 0.00 0.00 0.00 3.08
30 31 9.995003 AAGATACCAATTCTGCAAAACAAAATA 57.005 25.926 0.00 0.00 0.00 1.40
31 32 8.907222 AAGATACCAATTCTGCAAAACAAAAT 57.093 26.923 0.00 0.00 0.00 1.82
32 33 8.203485 AGAAGATACCAATTCTGCAAAACAAAA 58.797 29.630 0.00 0.00 34.52 2.44
33 34 7.725251 AGAAGATACCAATTCTGCAAAACAAA 58.275 30.769 0.00 0.00 34.52 2.83
34 35 7.014134 TGAGAAGATACCAATTCTGCAAAACAA 59.986 33.333 0.00 0.00 35.93 2.83
35 36 6.489700 TGAGAAGATACCAATTCTGCAAAACA 59.510 34.615 0.00 0.00 35.93 2.83
36 37 6.913170 TGAGAAGATACCAATTCTGCAAAAC 58.087 36.000 0.00 0.00 35.93 2.43
44 45 8.567948 TCAAAAACACTGAGAAGATACCAATTC 58.432 33.333 0.00 0.00 0.00 2.17
46 47 7.502226 TGTCAAAAACACTGAGAAGATACCAAT 59.498 33.333 0.00 0.00 31.20 3.16
50 51 8.345565 ACAATGTCAAAAACACTGAGAAGATAC 58.654 33.333 0.00 0.00 37.28 2.24
64 65 7.500992 TGGCCAGTAAATAACAATGTCAAAAA 58.499 30.769 0.00 0.00 0.00 1.94
71 72 5.348451 GCAACTTGGCCAGTAAATAACAATG 59.652 40.000 5.11 0.09 32.94 2.82
101 102 3.449377 ACTTTCCCCGCAAAGAAAAAGAA 59.551 39.130 1.59 0.00 36.92 2.52
104 105 3.431068 GGAACTTTCCCCGCAAAGAAAAA 60.431 43.478 1.59 0.00 41.62 1.94
125 126 5.380043 ACATCAGTAGATTTAATGCTGGGG 58.620 41.667 0.63 0.00 28.32 4.96
155 414 9.573133 CTATAGGTCTAAAAATGTTTGCCAAAG 57.427 33.333 0.00 0.00 0.00 2.77
240 499 8.695456 TCTACATTAGTGAGATTGATTGCACTA 58.305 33.333 0.00 0.00 41.43 2.74
241 500 7.559486 TCTACATTAGTGAGATTGATTGCACT 58.441 34.615 0.00 0.00 43.40 4.40
242 501 7.776933 TCTACATTAGTGAGATTGATTGCAC 57.223 36.000 0.00 0.00 0.00 4.57
243 502 7.041576 GCATCTACATTAGTGAGATTGATTGCA 60.042 37.037 0.00 0.00 0.00 4.08
244 503 7.172875 AGCATCTACATTAGTGAGATTGATTGC 59.827 37.037 0.00 0.00 0.00 3.56
354 648 4.443739 CCCATTACAACCAGCCTAATACGA 60.444 45.833 0.00 0.00 0.00 3.43
362 656 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
363 657 5.031066 TGATACTACCCATTACAACCAGC 57.969 43.478 0.00 0.00 0.00 4.85
364 658 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
365 659 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
368 662 9.991906 GCTAACTTATGATACTACCCATTACAA 57.008 33.333 0.00 0.00 0.00 2.41
369 663 9.150028 TGCTAACTTATGATACTACCCATTACA 57.850 33.333 0.00 0.00 0.00 2.41
372 666 8.880244 TGATGCTAACTTATGATACTACCCATT 58.120 33.333 0.00 0.00 0.00 3.16
373 667 8.435931 TGATGCTAACTTATGATACTACCCAT 57.564 34.615 0.00 0.00 0.00 4.00
374 668 7.849322 TGATGCTAACTTATGATACTACCCA 57.151 36.000 0.00 0.00 0.00 4.51
375 669 7.278868 GCATGATGCTAACTTATGATACTACCC 59.721 40.741 10.72 0.00 40.96 3.69
376 670 7.819415 TGCATGATGCTAACTTATGATACTACC 59.181 37.037 19.19 0.00 45.31 3.18
377 671 8.763049 TGCATGATGCTAACTTATGATACTAC 57.237 34.615 19.19 0.00 45.31 2.73
411 705 9.463902 GCATTAGGAAGGTAGTATCATAGACTA 57.536 37.037 0.00 0.00 0.00 2.59
412 706 7.950684 TGCATTAGGAAGGTAGTATCATAGACT 59.049 37.037 0.00 0.00 0.00 3.24
413 707 8.123639 TGCATTAGGAAGGTAGTATCATAGAC 57.876 38.462 0.00 0.00 0.00 2.59
414 708 8.901472 ATGCATTAGGAAGGTAGTATCATAGA 57.099 34.615 0.00 0.00 0.00 1.98
416 710 9.769677 ACTATGCATTAGGAAGGTAGTATCATA 57.230 33.333 3.54 0.00 31.68 2.15
417 711 8.671987 ACTATGCATTAGGAAGGTAGTATCAT 57.328 34.615 3.54 0.00 31.68 2.45
418 712 9.769677 ATACTATGCATTAGGAAGGTAGTATCA 57.230 33.333 3.54 0.00 31.70 2.15
420 714 9.769677 TGATACTATGCATTAGGAAGGTAGTAT 57.230 33.333 3.54 8.56 36.89 2.12
421 715 9.769677 ATGATACTATGCATTAGGAAGGTAGTA 57.230 33.333 3.54 3.44 31.68 1.82
422 716 8.671987 ATGATACTATGCATTAGGAAGGTAGT 57.328 34.615 3.54 0.88 31.68 2.73
425 719 9.271921 TCATATGATACTATGCATTAGGAAGGT 57.728 33.333 3.54 0.00 31.68 3.50
463 757 9.224267 GTCATGCATGGTAATAGATAAAGTCAT 57.776 33.333 25.97 0.00 0.00 3.06
464 758 8.210265 TGTCATGCATGGTAATAGATAAAGTCA 58.790 33.333 25.97 0.00 0.00 3.41
465 759 8.499162 GTGTCATGCATGGTAATAGATAAAGTC 58.501 37.037 25.97 0.00 0.00 3.01
466 760 7.992608 TGTGTCATGCATGGTAATAGATAAAGT 59.007 33.333 25.97 0.00 0.00 2.66
467 761 8.382030 TGTGTCATGCATGGTAATAGATAAAG 57.618 34.615 25.97 0.00 0.00 1.85
468 762 8.922931 ATGTGTCATGCATGGTAATAGATAAA 57.077 30.769 25.97 0.00 0.00 1.40
469 763 9.435688 GTATGTGTCATGCATGGTAATAGATAA 57.564 33.333 25.97 0.00 0.00 1.75
470 764 8.815912 AGTATGTGTCATGCATGGTAATAGATA 58.184 33.333 25.97 10.80 0.00 1.98
471 765 7.683578 AGTATGTGTCATGCATGGTAATAGAT 58.316 34.615 25.97 11.72 0.00 1.98
472 766 7.066307 AGTATGTGTCATGCATGGTAATAGA 57.934 36.000 25.97 4.96 0.00 1.98
473 767 8.090831 ACTAGTATGTGTCATGCATGGTAATAG 58.909 37.037 25.97 21.02 0.00 1.73
474 768 7.872483 CACTAGTATGTGTCATGCATGGTAATA 59.128 37.037 25.97 15.23 33.61 0.98
475 769 6.707608 CACTAGTATGTGTCATGCATGGTAAT 59.292 38.462 25.97 16.12 33.61 1.89
476 770 6.048509 CACTAGTATGTGTCATGCATGGTAA 58.951 40.000 25.97 9.59 33.61 2.85
477 771 5.362430 TCACTAGTATGTGTCATGCATGGTA 59.638 40.000 25.97 12.75 38.90 3.25
478 772 4.162131 TCACTAGTATGTGTCATGCATGGT 59.838 41.667 25.97 9.25 38.90 3.55
479 773 4.696455 TCACTAGTATGTGTCATGCATGG 58.304 43.478 25.97 8.61 38.90 3.66
480 774 4.210746 GCTCACTAGTATGTGTCATGCATG 59.789 45.833 21.07 21.07 38.90 4.06
481 775 4.141869 TGCTCACTAGTATGTGTCATGCAT 60.142 41.667 0.00 0.00 38.90 3.96
482 776 3.195396 TGCTCACTAGTATGTGTCATGCA 59.805 43.478 0.00 0.00 38.90 3.96
483 777 3.785486 TGCTCACTAGTATGTGTCATGC 58.215 45.455 0.00 0.00 38.90 4.06
484 778 6.915544 AAATGCTCACTAGTATGTGTCATG 57.084 37.500 0.00 0.00 38.90 3.07
531 825 4.081420 TGAAGTAAGAGAGGGTTGAGCATC 60.081 45.833 0.00 0.00 0.00 3.91
532 826 3.840666 TGAAGTAAGAGAGGGTTGAGCAT 59.159 43.478 0.00 0.00 0.00 3.79
533 827 3.239449 TGAAGTAAGAGAGGGTTGAGCA 58.761 45.455 0.00 0.00 0.00 4.26
534 828 3.963428 TGAAGTAAGAGAGGGTTGAGC 57.037 47.619 0.00 0.00 0.00 4.26
535 829 9.454859 AATTAAATGAAGTAAGAGAGGGTTGAG 57.545 33.333 0.00 0.00 0.00 3.02
536 830 9.449719 GAATTAAATGAAGTAAGAGAGGGTTGA 57.550 33.333 0.00 0.00 0.00 3.18
537 831 9.454859 AGAATTAAATGAAGTAAGAGAGGGTTG 57.545 33.333 0.00 0.00 0.00 3.77
549 843 9.911788 ATGAGGTGACATAGAATTAAATGAAGT 57.088 29.630 6.52 0.00 0.00 3.01
551 845 9.904198 TGATGAGGTGACATAGAATTAAATGAA 57.096 29.630 6.52 0.00 0.00 2.57
552 846 9.904198 TTGATGAGGTGACATAGAATTAAATGA 57.096 29.630 6.52 0.00 0.00 2.57
555 849 9.739276 ACTTTGATGAGGTGACATAGAATTAAA 57.261 29.630 0.00 0.00 0.00 1.52
556 850 9.739276 AACTTTGATGAGGTGACATAGAATTAA 57.261 29.630 0.00 0.00 0.00 1.40
557 851 9.166173 CAACTTTGATGAGGTGACATAGAATTA 57.834 33.333 0.00 0.00 36.43 1.40
558 852 7.667219 ACAACTTTGATGAGGTGACATAGAATT 59.333 33.333 0.00 0.00 36.43 2.17
559 853 7.170965 ACAACTTTGATGAGGTGACATAGAAT 58.829 34.615 0.00 0.00 36.43 2.40
560 854 6.533730 ACAACTTTGATGAGGTGACATAGAA 58.466 36.000 0.00 0.00 36.43 2.10
561 855 6.014242 AGACAACTTTGATGAGGTGACATAGA 60.014 38.462 0.00 0.00 36.43 1.98
562 856 6.169094 AGACAACTTTGATGAGGTGACATAG 58.831 40.000 0.00 0.00 36.43 2.23
563 857 6.114187 AGACAACTTTGATGAGGTGACATA 57.886 37.500 0.00 0.00 36.43 2.29
564 858 4.978099 AGACAACTTTGATGAGGTGACAT 58.022 39.130 0.00 0.00 36.43 3.06
565 859 4.422073 AGACAACTTTGATGAGGTGACA 57.578 40.909 0.00 0.00 36.43 3.58
566 860 5.542779 ACTAGACAACTTTGATGAGGTGAC 58.457 41.667 0.00 0.00 36.43 3.67
567 861 5.808366 ACTAGACAACTTTGATGAGGTGA 57.192 39.130 0.00 0.00 36.43 4.02
568 862 5.180117 CCAACTAGACAACTTTGATGAGGTG 59.820 44.000 0.00 0.00 40.24 4.00
569 863 5.308825 CCAACTAGACAACTTTGATGAGGT 58.691 41.667 0.00 0.00 0.00 3.85
570 864 4.154918 GCCAACTAGACAACTTTGATGAGG 59.845 45.833 0.00 0.00 0.00 3.86
571 865 4.756642 TGCCAACTAGACAACTTTGATGAG 59.243 41.667 0.00 0.00 0.00 2.90
572 866 4.713553 TGCCAACTAGACAACTTTGATGA 58.286 39.130 0.00 0.00 0.00 2.92
573 867 5.396484 CATGCCAACTAGACAACTTTGATG 58.604 41.667 0.00 0.00 0.00 3.07
574 868 4.082571 GCATGCCAACTAGACAACTTTGAT 60.083 41.667 6.36 0.00 0.00 2.57
575 869 3.253188 GCATGCCAACTAGACAACTTTGA 59.747 43.478 6.36 0.00 0.00 2.69
576 870 3.004629 TGCATGCCAACTAGACAACTTTG 59.995 43.478 16.68 0.00 0.00 2.77
577 871 3.221771 TGCATGCCAACTAGACAACTTT 58.778 40.909 16.68 0.00 0.00 2.66
578 872 2.862541 TGCATGCCAACTAGACAACTT 58.137 42.857 16.68 0.00 0.00 2.66
579 873 2.566833 TGCATGCCAACTAGACAACT 57.433 45.000 16.68 0.00 0.00 3.16
580 874 2.749076 TCATGCATGCCAACTAGACAAC 59.251 45.455 22.25 0.00 0.00 3.32
581 875 3.070476 TCATGCATGCCAACTAGACAA 57.930 42.857 22.25 0.00 0.00 3.18
582 876 2.785540 TCATGCATGCCAACTAGACA 57.214 45.000 22.25 0.00 0.00 3.41
583 877 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
584 878 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
585 879 6.168389 TCATAGTATCATGCATGCCAACTAG 58.832 40.000 25.81 20.50 0.00 2.57
586 880 6.112927 TCATAGTATCATGCATGCCAACTA 57.887 37.500 24.91 24.91 0.00 2.24
587 881 4.976864 TCATAGTATCATGCATGCCAACT 58.023 39.130 22.25 22.78 0.00 3.16
588 882 5.892160 ATCATAGTATCATGCATGCCAAC 57.108 39.130 22.25 17.59 0.00 3.77
589 883 6.714278 AGTATCATAGTATCATGCATGCCAA 58.286 36.000 22.25 5.34 0.00 4.52
590 884 6.303903 AGTATCATAGTATCATGCATGCCA 57.696 37.500 22.25 8.84 0.00 4.92
591 885 5.757320 GGAGTATCATAGTATCATGCATGCC 59.243 44.000 22.25 11.72 36.25 4.40
592 886 5.757320 GGGAGTATCATAGTATCATGCATGC 59.243 44.000 22.25 11.82 36.25 4.06
593 887 6.881570 TGGGAGTATCATAGTATCATGCATG 58.118 40.000 21.07 21.07 36.25 4.06
594 888 7.687383 ATGGGAGTATCATAGTATCATGCAT 57.313 36.000 0.00 0.00 36.25 3.96
595 889 7.500629 AATGGGAGTATCATAGTATCATGCA 57.499 36.000 0.00 0.00 36.25 3.96
596 890 8.478066 TGTAATGGGAGTATCATAGTATCATGC 58.522 37.037 0.00 0.00 36.25 4.06
599 893 8.812972 GGTTGTAATGGGAGTATCATAGTATCA 58.187 37.037 0.00 0.00 36.25 2.15
600 894 8.812972 TGGTTGTAATGGGAGTATCATAGTATC 58.187 37.037 0.00 0.00 36.25 2.24
601 895 8.736097 TGGTTGTAATGGGAGTATCATAGTAT 57.264 34.615 0.00 0.00 36.25 2.12
602 896 7.256190 GCTGGTTGTAATGGGAGTATCATAGTA 60.256 40.741 0.00 0.00 36.25 1.82
603 897 6.464465 GCTGGTTGTAATGGGAGTATCATAGT 60.464 42.308 0.00 0.00 36.25 2.12
604 898 5.934625 GCTGGTTGTAATGGGAGTATCATAG 59.065 44.000 0.00 0.00 36.25 2.23
605 899 5.221843 GGCTGGTTGTAATGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
606 900 4.446311 GGCTGGTTGTAATGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
607 901 3.118038 GGCTGGTTGTAATGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
608 902 3.136626 AGGCTGGTTGTAATGGGAGTATC 59.863 47.826 0.00 0.00 0.00 2.24
609 903 3.123273 AGGCTGGTTGTAATGGGAGTAT 58.877 45.455 0.00 0.00 0.00 2.12
610 904 2.557869 AGGCTGGTTGTAATGGGAGTA 58.442 47.619 0.00 0.00 0.00 2.59
611 905 1.372501 AGGCTGGTTGTAATGGGAGT 58.627 50.000 0.00 0.00 0.00 3.85
612 906 2.514458 AAGGCTGGTTGTAATGGGAG 57.486 50.000 0.00 0.00 0.00 4.30
613 907 4.043561 TCTTTAAGGCTGGTTGTAATGGGA 59.956 41.667 0.00 0.00 0.00 4.37
614 908 4.340617 TCTTTAAGGCTGGTTGTAATGGG 58.659 43.478 0.00 0.00 0.00 4.00
615 909 5.975693 TTCTTTAAGGCTGGTTGTAATGG 57.024 39.130 0.00 0.00 0.00 3.16
616 910 6.645003 GGTTTTCTTTAAGGCTGGTTGTAATG 59.355 38.462 0.00 0.00 0.00 1.90
617 911 6.325286 TGGTTTTCTTTAAGGCTGGTTGTAAT 59.675 34.615 0.00 0.00 0.00 1.89
618 912 5.657302 TGGTTTTCTTTAAGGCTGGTTGTAA 59.343 36.000 0.00 0.00 0.00 2.41
619 913 5.068067 GTGGTTTTCTTTAAGGCTGGTTGTA 59.932 40.000 0.00 0.00 0.00 2.41
620 914 4.027437 TGGTTTTCTTTAAGGCTGGTTGT 58.973 39.130 0.00 0.00 0.00 3.32
621 915 4.368315 GTGGTTTTCTTTAAGGCTGGTTG 58.632 43.478 0.00 0.00 0.00 3.77
622 916 3.386726 GGTGGTTTTCTTTAAGGCTGGTT 59.613 43.478 0.00 0.00 0.00 3.67
623 917 2.963101 GGTGGTTTTCTTTAAGGCTGGT 59.037 45.455 0.00 0.00 0.00 4.00
624 918 2.962421 TGGTGGTTTTCTTTAAGGCTGG 59.038 45.455 0.00 0.00 0.00 4.85
625 919 3.243737 GGTGGTGGTTTTCTTTAAGGCTG 60.244 47.826 0.00 0.00 0.00 4.85
626 920 2.963101 GGTGGTGGTTTTCTTTAAGGCT 59.037 45.455 0.00 0.00 0.00 4.58
627 921 2.696187 TGGTGGTGGTTTTCTTTAAGGC 59.304 45.455 0.00 0.00 0.00 4.35
628 922 3.069016 GGTGGTGGTGGTTTTCTTTAAGG 59.931 47.826 0.00 0.00 0.00 2.69
629 923 3.702045 TGGTGGTGGTGGTTTTCTTTAAG 59.298 43.478 0.00 0.00 0.00 1.85
630 924 3.709587 TGGTGGTGGTGGTTTTCTTTAA 58.290 40.909 0.00 0.00 0.00 1.52
631 925 3.383698 TGGTGGTGGTGGTTTTCTTTA 57.616 42.857 0.00 0.00 0.00 1.85
632 926 2.239681 TGGTGGTGGTGGTTTTCTTT 57.760 45.000 0.00 0.00 0.00 2.52
674 971 3.157949 GCGCCTCTCCCCTAGCTT 61.158 66.667 0.00 0.00 0.00 3.74
702 999 4.913924 CGTATAACTATTGCTGGGTACGAC 59.086 45.833 0.00 0.00 36.68 4.34
703 1000 4.557296 GCGTATAACTATTGCTGGGTACGA 60.557 45.833 5.87 0.00 36.68 3.43
735 1032 1.202330 CTGGTGGATTGGAGCTCTCT 58.798 55.000 14.64 0.00 0.00 3.10
893 1198 4.833478 ACACACAGAAATGGATAGCTCT 57.167 40.909 0.00 0.00 0.00 4.09
939 1249 4.451150 GCTGCACGATGGGGACGA 62.451 66.667 0.00 0.00 34.70 4.20
985 1295 3.770040 CATCCTCGACCACCGGCA 61.770 66.667 0.00 0.00 39.14 5.69
1127 1442 4.695993 TGCTGATGGCGCCGTTCA 62.696 61.111 24.75 24.96 45.43 3.18
1396 1714 3.550233 CGACTTGAAGGAACGAACTGAGA 60.550 47.826 0.00 0.00 0.00 3.27
1455 1777 2.814280 TTCGTCTCCCAGAAGTCAAC 57.186 50.000 0.00 0.00 0.00 3.18
1465 1787 1.202475 GGCATCTCTCTTTCGTCTCCC 60.202 57.143 0.00 0.00 0.00 4.30
1471 1793 4.499183 ACAAACTAGGCATCTCTCTTTCG 58.501 43.478 0.00 0.00 0.00 3.46
1472 1794 5.123027 CCAACAAACTAGGCATCTCTCTTTC 59.877 44.000 0.00 0.00 0.00 2.62
1474 1796 4.583871 CCAACAAACTAGGCATCTCTCTT 58.416 43.478 0.00 0.00 0.00 2.85
1475 1797 4.213564 CCAACAAACTAGGCATCTCTCT 57.786 45.455 0.00 0.00 0.00 3.10
1484 1806 1.197721 CTTGCGAGCCAACAAACTAGG 59.802 52.381 0.00 0.00 0.00 3.02
1485 1807 1.400242 GCTTGCGAGCCAACAAACTAG 60.400 52.381 15.66 0.00 43.29 2.57
1486 1808 0.591170 GCTTGCGAGCCAACAAACTA 59.409 50.000 15.66 0.00 43.29 2.24
1487 1809 1.360192 GCTTGCGAGCCAACAAACT 59.640 52.632 15.66 0.00 43.29 2.66
1488 1810 3.922175 GCTTGCGAGCCAACAAAC 58.078 55.556 15.66 0.00 43.29 2.93
1561 1883 0.753262 CCTAGACCCAACTCCATCCG 59.247 60.000 0.00 0.00 0.00 4.18
1562 1884 1.880941 ACCTAGACCCAACTCCATCC 58.119 55.000 0.00 0.00 0.00 3.51
1627 2212 3.539604 GCAGTAATTCTGAGCAGACCAT 58.460 45.455 0.00 0.00 46.27 3.55
1651 2236 9.499585 CAGAGAAGATTAAATATTTGCACTGTG 57.500 33.333 11.05 2.76 0.00 3.66
1722 2311 9.590451 AAGAAAAACATATTTGTGCTGATATGG 57.410 29.630 7.89 0.00 39.45 2.74
1748 2337 4.566545 ATGCCGATATCATTCGCAAAAA 57.433 36.364 3.12 0.00 37.80 1.94
1749 2338 5.681337 TTATGCCGATATCATTCGCAAAA 57.319 34.783 3.12 0.00 37.80 2.44
1750 2339 5.681337 TTTATGCCGATATCATTCGCAAA 57.319 34.783 3.12 0.82 37.80 3.68
1751 2340 5.878332 ATTTATGCCGATATCATTCGCAA 57.122 34.783 3.12 0.00 37.80 4.85
1752 2341 6.947258 CATATTTATGCCGATATCATTCGCA 58.053 36.000 3.12 5.02 37.80 5.10
1837 2429 5.105567 TCAAAGAAACCAGTGAACCACTA 57.894 39.130 0.00 0.00 43.43 2.74
1838 2430 3.963129 TCAAAGAAACCAGTGAACCACT 58.037 40.909 0.00 0.00 46.51 4.00
1952 2551 2.230266 TGCGGGCTTGAAGGTAAATTTC 59.770 45.455 0.00 0.00 0.00 2.17
2001 2600 7.160547 TGACAGTTTGCATTGAACATCATAT 57.839 32.000 2.79 0.00 0.00 1.78
2005 2604 5.042593 TGTTGACAGTTTGCATTGAACATC 58.957 37.500 2.79 1.05 0.00 3.06
2011 2610 5.501252 GCTCTTTTGTTGACAGTTTGCATTG 60.501 40.000 0.00 0.00 0.00 2.82
2012 2611 4.567959 GCTCTTTTGTTGACAGTTTGCATT 59.432 37.500 0.00 0.00 0.00 3.56
2014 2613 3.056962 TGCTCTTTTGTTGACAGTTTGCA 60.057 39.130 0.00 0.00 0.00 4.08
2027 2626 5.775686 TGACCTCAATTTGATGCTCTTTTG 58.224 37.500 0.00 0.00 0.00 2.44
2039 2638 9.872684 ATTATGGATGTAAGATGACCTCAATTT 57.127 29.630 0.00 0.00 0.00 1.82
2058 2657 9.527157 TCTTTTGTCATGAAACCTAATTATGGA 57.473 29.630 0.00 0.00 0.00 3.41
2070 2669 3.066064 CGTGGTGGTCTTTTGTCATGAAA 59.934 43.478 0.00 0.00 0.00 2.69
2079 2678 3.482436 TCTTAATGCGTGGTGGTCTTTT 58.518 40.909 0.00 0.00 0.00 2.27
2083 2682 2.094762 ACTCTTAATGCGTGGTGGTC 57.905 50.000 0.00 0.00 0.00 4.02
2087 2686 3.006967 AGTCTCAACTCTTAATGCGTGGT 59.993 43.478 0.00 0.00 0.00 4.16
2092 2691 6.102663 TGCTCTTAGTCTCAACTCTTAATGC 58.897 40.000 0.00 0.00 36.92 3.56
2094 2693 7.902087 AGTTGCTCTTAGTCTCAACTCTTAAT 58.098 34.615 9.32 0.00 43.80 1.40
2104 2703 4.638421 TCTGCTAGAGTTGCTCTTAGTCTC 59.362 45.833 3.87 0.00 41.50 3.36
2132 2731 4.903045 TCTTAGAGGGTGTTGGGTTTAG 57.097 45.455 0.00 0.00 0.00 1.85
2135 2734 4.741928 ATTTCTTAGAGGGTGTTGGGTT 57.258 40.909 0.00 0.00 0.00 4.11
2189 2788 3.117663 GGGATACATGGCAACTTAGGGAA 60.118 47.826 0.00 0.00 39.74 3.97
2197 2796 2.497273 AGCTTTTGGGATACATGGCAAC 59.503 45.455 0.00 0.00 39.74 4.17
2198 2797 2.818921 AGCTTTTGGGATACATGGCAA 58.181 42.857 0.00 0.00 39.74 4.52
2199 2798 2.530460 AGCTTTTGGGATACATGGCA 57.470 45.000 0.00 0.00 39.74 4.92
2200 2799 3.430790 GGAAAGCTTTTGGGATACATGGC 60.431 47.826 14.05 0.00 39.74 4.40
2201 2800 4.026052 AGGAAAGCTTTTGGGATACATGG 58.974 43.478 14.05 0.00 39.74 3.66
2202 2801 6.773976 TTAGGAAAGCTTTTGGGATACATG 57.226 37.500 14.05 0.00 39.74 3.21
2203 2802 7.633553 GCATTTAGGAAAGCTTTTGGGATACAT 60.634 37.037 14.05 0.00 39.74 2.29
2204 2803 6.350949 GCATTTAGGAAAGCTTTTGGGATACA 60.351 38.462 14.05 0.00 39.74 2.29
2205 2804 6.042777 GCATTTAGGAAAGCTTTTGGGATAC 58.957 40.000 14.05 0.00 0.00 2.24
2206 2805 5.957774 AGCATTTAGGAAAGCTTTTGGGATA 59.042 36.000 14.05 0.00 32.52 2.59
2207 2806 4.779489 AGCATTTAGGAAAGCTTTTGGGAT 59.221 37.500 14.05 2.05 32.52 3.85
2208 2807 4.159557 AGCATTTAGGAAAGCTTTTGGGA 58.840 39.130 14.05 0.00 32.52 4.37
2209 2808 4.541973 AGCATTTAGGAAAGCTTTTGGG 57.458 40.909 14.05 0.90 32.52 4.12
2210 2809 6.024552 TGTAGCATTTAGGAAAGCTTTTGG 57.975 37.500 14.05 0.00 38.47 3.28
2211 2810 6.913170 TCTGTAGCATTTAGGAAAGCTTTTG 58.087 36.000 14.05 7.53 38.47 2.44
2212 2811 7.371159 GTTCTGTAGCATTTAGGAAAGCTTTT 58.629 34.615 14.05 0.29 38.47 2.27
2213 2812 6.071896 GGTTCTGTAGCATTTAGGAAAGCTTT 60.072 38.462 12.53 12.53 38.47 3.51
2214 2813 5.416013 GGTTCTGTAGCATTTAGGAAAGCTT 59.584 40.000 0.00 0.00 38.47 3.74
2215 2814 4.944317 GGTTCTGTAGCATTTAGGAAAGCT 59.056 41.667 0.00 0.00 40.92 3.74
2216 2815 4.201822 CGGTTCTGTAGCATTTAGGAAAGC 60.202 45.833 0.00 0.00 0.00 3.51
2217 2816 5.063564 GTCGGTTCTGTAGCATTTAGGAAAG 59.936 44.000 0.00 0.00 0.00 2.62
2218 2817 4.933400 GTCGGTTCTGTAGCATTTAGGAAA 59.067 41.667 0.00 0.00 0.00 3.13
2219 2818 4.501071 GTCGGTTCTGTAGCATTTAGGAA 58.499 43.478 0.00 0.00 0.00 3.36
2220 2819 3.428452 CGTCGGTTCTGTAGCATTTAGGA 60.428 47.826 0.00 0.00 0.00 2.94
2221 2820 2.858344 CGTCGGTTCTGTAGCATTTAGG 59.142 50.000 0.00 0.00 0.00 2.69
2222 2821 3.508762 ACGTCGGTTCTGTAGCATTTAG 58.491 45.455 0.00 0.00 0.00 1.85
2223 2822 3.581024 ACGTCGGTTCTGTAGCATTTA 57.419 42.857 0.00 0.00 0.00 1.40
2224 2823 2.450609 ACGTCGGTTCTGTAGCATTT 57.549 45.000 0.00 0.00 0.00 2.32
2225 2824 2.450609 AACGTCGGTTCTGTAGCATT 57.549 45.000 0.00 0.00 0.00 3.56
2235 2834 3.749609 CCCTAAAAATCTGAACGTCGGTT 59.250 43.478 0.00 0.00 39.63 4.44
2236 2835 3.007182 TCCCTAAAAATCTGAACGTCGGT 59.993 43.478 0.00 0.00 0.00 4.69
2237 2836 3.592059 TCCCTAAAAATCTGAACGTCGG 58.408 45.455 0.00 0.00 0.00 4.79
2238 2837 4.243270 ACTCCCTAAAAATCTGAACGTCG 58.757 43.478 0.00 0.00 0.00 5.12
2239 2838 5.121925 GGAACTCCCTAAAAATCTGAACGTC 59.878 44.000 0.00 0.00 0.00 4.34
2240 2839 5.001874 GGAACTCCCTAAAAATCTGAACGT 58.998 41.667 0.00 0.00 0.00 3.99
2241 2840 4.092968 CGGAACTCCCTAAAAATCTGAACG 59.907 45.833 0.00 0.00 0.00 3.95
2242 2841 5.243207 TCGGAACTCCCTAAAAATCTGAAC 58.757 41.667 0.00 0.00 0.00 3.18
2243 2842 5.488341 CTCGGAACTCCCTAAAAATCTGAA 58.512 41.667 0.00 0.00 0.00 3.02
2244 2843 4.623171 GCTCGGAACTCCCTAAAAATCTGA 60.623 45.833 0.00 0.00 0.00 3.27
2245 2844 3.623510 GCTCGGAACTCCCTAAAAATCTG 59.376 47.826 0.00 0.00 0.00 2.90
2246 2845 3.370633 GGCTCGGAACTCCCTAAAAATCT 60.371 47.826 0.00 0.00 0.00 2.40
2247 2846 2.943690 GGCTCGGAACTCCCTAAAAATC 59.056 50.000 0.00 0.00 0.00 2.17
2248 2847 2.307686 TGGCTCGGAACTCCCTAAAAAT 59.692 45.455 0.00 0.00 0.00 1.82
2249 2848 1.700739 TGGCTCGGAACTCCCTAAAAA 59.299 47.619 0.00 0.00 0.00 1.94
2250 2849 1.354101 TGGCTCGGAACTCCCTAAAA 58.646 50.000 0.00 0.00 0.00 1.52
2251 2850 1.354101 TTGGCTCGGAACTCCCTAAA 58.646 50.000 0.00 0.00 0.00 1.85
2252 2851 1.209504 CATTGGCTCGGAACTCCCTAA 59.790 52.381 0.00 0.00 0.00 2.69
2253 2852 0.830648 CATTGGCTCGGAACTCCCTA 59.169 55.000 0.00 0.00 0.00 3.53
2254 2853 1.604378 CATTGGCTCGGAACTCCCT 59.396 57.895 0.00 0.00 0.00 4.20
2255 2854 2.115291 GCATTGGCTCGGAACTCCC 61.115 63.158 0.00 0.00 36.96 4.30
2256 2855 2.115291 GGCATTGGCTCGGAACTCC 61.115 63.158 2.42 0.00 40.87 3.85
2257 2856 2.115291 GGGCATTGGCTCGGAACTC 61.115 63.158 10.31 0.00 40.87 3.01
2258 2857 2.044946 GGGCATTGGCTCGGAACT 60.045 61.111 10.31 0.00 40.87 3.01
2273 2872 3.432051 GATCCGACGTGCCTGAGGG 62.432 68.421 0.00 0.00 0.00 4.30
2274 2873 2.105128 GATCCGACGTGCCTGAGG 59.895 66.667 0.00 0.00 0.00 3.86
2275 2874 2.105128 GGATCCGACGTGCCTGAG 59.895 66.667 0.00 0.00 0.00 3.35
2276 2875 3.458163 GGGATCCGACGTGCCTGA 61.458 66.667 5.45 0.00 0.00 3.86
2287 2886 1.887707 GGATTCGTGTGCGGGATCC 60.888 63.158 1.92 1.92 40.79 3.36
2288 2887 0.387929 TAGGATTCGTGTGCGGGATC 59.612 55.000 0.00 0.00 38.89 3.36
2289 2888 0.828022 TTAGGATTCGTGTGCGGGAT 59.172 50.000 0.00 0.00 38.89 3.85
2290 2889 0.609151 TTTAGGATTCGTGTGCGGGA 59.391 50.000 0.00 0.00 38.89 5.14
2291 2890 1.006832 CTTTAGGATTCGTGTGCGGG 58.993 55.000 0.00 0.00 38.89 6.13
2292 2891 0.373716 GCTTTAGGATTCGTGTGCGG 59.626 55.000 0.00 0.00 38.89 5.69
2293 2892 0.373716 GGCTTTAGGATTCGTGTGCG 59.626 55.000 0.00 0.00 39.92 5.34
2294 2893 1.739067 AGGCTTTAGGATTCGTGTGC 58.261 50.000 0.00 0.00 0.00 4.57
2295 2894 3.670627 GCAAAGGCTTTAGGATTCGTGTG 60.671 47.826 12.95 0.00 36.96 3.82
2296 2895 2.488153 GCAAAGGCTTTAGGATTCGTGT 59.512 45.455 12.95 0.00 36.96 4.49
2297 2896 3.136808 GCAAAGGCTTTAGGATTCGTG 57.863 47.619 12.95 0.00 36.96 4.35
2310 2909 1.383523 GGGTATGTGAGAGCAAAGGC 58.616 55.000 0.00 0.00 41.61 4.35
2311 2910 1.561542 AGGGGTATGTGAGAGCAAAGG 59.438 52.381 0.00 0.00 0.00 3.11
2312 2911 2.420687 GGAGGGGTATGTGAGAGCAAAG 60.421 54.545 0.00 0.00 0.00 2.77
2313 2912 1.559682 GGAGGGGTATGTGAGAGCAAA 59.440 52.381 0.00 0.00 0.00 3.68
2314 2913 1.204146 GGAGGGGTATGTGAGAGCAA 58.796 55.000 0.00 0.00 0.00 3.91
2315 2914 1.043116 CGGAGGGGTATGTGAGAGCA 61.043 60.000 0.00 0.00 0.00 4.26
2316 2915 0.755698 TCGGAGGGGTATGTGAGAGC 60.756 60.000 0.00 0.00 0.00 4.09
2317 2916 1.323412 CTCGGAGGGGTATGTGAGAG 58.677 60.000 0.00 0.00 0.00 3.20
2318 2917 0.755698 GCTCGGAGGGGTATGTGAGA 60.756 60.000 7.20 0.00 0.00 3.27
2319 2918 1.742768 GCTCGGAGGGGTATGTGAG 59.257 63.158 7.20 0.00 0.00 3.51
2320 2919 2.125326 CGCTCGGAGGGGTATGTGA 61.125 63.158 13.81 0.00 0.00 3.58
2321 2920 1.672854 TTCGCTCGGAGGGGTATGTG 61.673 60.000 20.27 0.00 0.00 3.21
2322 2921 1.380785 TTCGCTCGGAGGGGTATGT 60.381 57.895 20.27 0.00 0.00 2.29
2323 2922 1.067582 GTTCGCTCGGAGGGGTATG 59.932 63.158 20.27 0.00 0.00 2.39
2324 2923 0.184451 TAGTTCGCTCGGAGGGGTAT 59.816 55.000 20.27 9.81 0.00 2.73
2325 2924 0.034186 TTAGTTCGCTCGGAGGGGTA 60.034 55.000 20.27 7.76 0.00 3.69
2326 2925 1.304713 TTAGTTCGCTCGGAGGGGT 60.305 57.895 20.27 9.33 0.00 4.95
2327 2926 1.035932 TCTTAGTTCGCTCGGAGGGG 61.036 60.000 20.27 5.05 0.00 4.79
2328 2927 0.382515 CTCTTAGTTCGCTCGGAGGG 59.617 60.000 15.31 15.31 0.00 4.30
2329 2928 0.248702 GCTCTTAGTTCGCTCGGAGG 60.249 60.000 7.20 0.00 31.32 4.30
2330 2929 0.248702 GGCTCTTAGTTCGCTCGGAG 60.249 60.000 0.00 0.00 32.72 4.63
2331 2930 1.807886 GGCTCTTAGTTCGCTCGGA 59.192 57.895 0.00 0.00 0.00 4.55
2332 2931 1.586564 CGGCTCTTAGTTCGCTCGG 60.587 63.158 0.00 0.00 0.00 4.63
2333 2932 1.586564 CCGGCTCTTAGTTCGCTCG 60.587 63.158 0.00 0.00 0.00 5.03
2334 2933 1.878975 GCCGGCTCTTAGTTCGCTC 60.879 63.158 22.15 0.00 0.00 5.03
2335 2934 2.184579 GCCGGCTCTTAGTTCGCT 59.815 61.111 22.15 0.00 0.00 4.93
2336 2935 3.255379 CGCCGGCTCTTAGTTCGC 61.255 66.667 26.68 0.00 0.00 4.70
2337 2936 2.582498 CCGCCGGCTCTTAGTTCG 60.582 66.667 26.68 4.88 0.00 3.95
2338 2937 2.890961 GCCGCCGGCTCTTAGTTC 60.891 66.667 26.68 0.06 46.69 3.01
2348 2947 1.988834 GAACCATTTAGTGCCGCCGG 61.989 60.000 0.00 0.00 0.00 6.13
2349 2948 1.302383 TGAACCATTTAGTGCCGCCG 61.302 55.000 0.00 0.00 0.00 6.46
2350 2949 0.170339 GTGAACCATTTAGTGCCGCC 59.830 55.000 0.00 0.00 0.00 6.13
2351 2950 1.165270 AGTGAACCATTTAGTGCCGC 58.835 50.000 0.00 0.00 0.00 6.53
2352 2951 4.000988 ACTAAGTGAACCATTTAGTGCCG 58.999 43.478 12.12 0.00 42.42 5.69
2353 2952 6.821665 TCATACTAAGTGAACCATTTAGTGCC 59.178 38.462 18.76 0.00 43.32 5.01
2354 2953 7.464178 CGTCATACTAAGTGAACCATTTAGTGC 60.464 40.741 18.76 9.55 43.32 4.40
2355 2954 7.758076 TCGTCATACTAAGTGAACCATTTAGTG 59.242 37.037 18.76 8.40 43.32 2.74
2356 2955 7.758528 GTCGTCATACTAAGTGAACCATTTAGT 59.241 37.037 15.65 15.65 44.73 2.24
2357 2956 7.044249 CGTCGTCATACTAAGTGAACCATTTAG 60.044 40.741 7.42 7.42 38.85 1.85
2358 2957 6.748658 CGTCGTCATACTAAGTGAACCATTTA 59.251 38.462 0.00 0.00 0.00 1.40
2359 2958 5.575606 CGTCGTCATACTAAGTGAACCATTT 59.424 40.000 0.00 0.00 0.00 2.32
2360 2959 5.100259 CGTCGTCATACTAAGTGAACCATT 58.900 41.667 0.00 0.00 0.00 3.16
2361 2960 4.669318 CGTCGTCATACTAAGTGAACCAT 58.331 43.478 0.00 0.00 0.00 3.55
2362 2961 4.087510 CGTCGTCATACTAAGTGAACCA 57.912 45.455 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.