Multiple sequence alignment - TraesCS3B01G407700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G407700 chr3B 100.000 2979 0 0 1 2979 643255656 643258634 0.000000e+00 5502
1 TraesCS3B01G407700 chr3D 91.860 2371 115 29 303 2616 481701365 481703714 0.000000e+00 3238
2 TraesCS3B01G407700 chr3D 87.200 125 14 2 1669 1792 474216234 474216111 1.110000e-29 141
3 TraesCS3B01G407700 chr3D 96.154 78 2 1 2902 2979 481703802 481703878 3.120000e-25 126
4 TraesCS3B01G407700 chr3A 86.731 1854 102 58 876 2642 624829147 624830943 0.000000e+00 1929
5 TraesCS3B01G407700 chr3A 85.055 455 39 16 386 820 624828678 624829123 1.270000e-118 436
6 TraesCS3B01G407700 chr3A 92.258 155 9 1 2825 2979 624831252 624831403 1.800000e-52 217
7 TraesCS3B01G407700 chr3A 88.000 125 13 2 1669 1792 616492648 616492525 2.390000e-31 147
8 TraesCS3B01G407700 chr1A 80.655 336 53 11 1121 1444 470686655 470686320 1.770000e-62 250
9 TraesCS3B01G407700 chr1A 89.418 189 17 2 1671 1856 470686083 470685895 4.960000e-58 235
10 TraesCS3B01G407700 chr1A 88.095 126 13 2 1668 1792 474450730 474450606 6.650000e-32 148
11 TraesCS3B01G407700 chr1B 89.947 189 16 2 1671 1856 495415717 495415529 1.070000e-59 241
12 TraesCS3B01G407700 chr1D 89.418 189 17 2 1671 1856 371341254 371341066 4.960000e-58 235
13 TraesCS3B01G407700 chr1D 88.281 128 13 2 1668 1794 375646700 375646574 5.140000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G407700 chr3B 643255656 643258634 2978 False 5502.000000 5502 100.000000 1 2979 1 chr3B.!!$F1 2978
1 TraesCS3B01G407700 chr3D 481701365 481703878 2513 False 1682.000000 3238 94.007000 303 2979 2 chr3D.!!$F1 2676
2 TraesCS3B01G407700 chr3A 624828678 624831403 2725 False 860.666667 1929 88.014667 386 2979 3 chr3A.!!$F1 2593
3 TraesCS3B01G407700 chr1A 470685895 470686655 760 True 242.500000 250 85.036500 1121 1856 2 chr1A.!!$R2 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.036732 CTCTAGGGCACAACTGGCAA 59.963 55.0 0.0 0.0 44.99 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2285 0.109272 TCTGCATCGACACGGACTTC 60.109 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.874392 GCCTGATGCCATGTAAAACTT 57.126 42.857 0.00 0.00 0.00 2.66
29 30 3.514645 GCCTGATGCCATGTAAAACTTG 58.485 45.455 0.00 0.00 0.00 3.16
30 31 3.193267 GCCTGATGCCATGTAAAACTTGA 59.807 43.478 0.00 0.00 0.00 3.02
31 32 4.676196 GCCTGATGCCATGTAAAACTTGAG 60.676 45.833 0.00 0.00 0.00 3.02
32 33 4.701651 CCTGATGCCATGTAAAACTTGAGA 59.298 41.667 0.00 0.00 0.00 3.27
33 34 5.183713 CCTGATGCCATGTAAAACTTGAGAA 59.816 40.000 0.00 0.00 0.00 2.87
34 35 6.294675 CCTGATGCCATGTAAAACTTGAGAAA 60.295 38.462 0.00 0.00 0.00 2.52
35 36 7.048629 TGATGCCATGTAAAACTTGAGAAAA 57.951 32.000 0.00 0.00 0.00 2.29
36 37 7.147312 TGATGCCATGTAAAACTTGAGAAAAG 58.853 34.615 0.00 0.00 0.00 2.27
37 38 6.707440 TGCCATGTAAAACTTGAGAAAAGA 57.293 33.333 0.00 0.00 0.00 2.52
38 39 7.106439 TGCCATGTAAAACTTGAGAAAAGAA 57.894 32.000 0.00 0.00 0.00 2.52
39 40 7.551585 TGCCATGTAAAACTTGAGAAAAGAAA 58.448 30.769 0.00 0.00 0.00 2.52
40 41 7.706179 TGCCATGTAAAACTTGAGAAAAGAAAG 59.294 33.333 0.00 0.00 0.00 2.62
41 42 7.920682 GCCATGTAAAACTTGAGAAAAGAAAGA 59.079 33.333 0.00 0.00 0.00 2.52
42 43 9.971922 CCATGTAAAACTTGAGAAAAGAAAGAT 57.028 29.630 0.00 0.00 0.00 2.40
45 46 9.801873 TGTAAAACTTGAGAAAAGAAAGATTGG 57.198 29.630 0.00 0.00 0.00 3.16
48 49 9.755804 AAAACTTGAGAAAAGAAAGATTGGATC 57.244 29.630 0.00 0.00 0.00 3.36
49 50 8.703378 AACTTGAGAAAAGAAAGATTGGATCT 57.297 30.769 0.00 0.00 42.61 2.75
50 51 8.108551 ACTTGAGAAAAGAAAGATTGGATCTG 57.891 34.615 0.00 0.00 40.13 2.90
51 52 7.723172 ACTTGAGAAAAGAAAGATTGGATCTGT 59.277 33.333 0.00 0.00 40.13 3.41
52 53 9.224267 CTTGAGAAAAGAAAGATTGGATCTGTA 57.776 33.333 0.00 0.00 40.13 2.74
53 54 8.553459 TGAGAAAAGAAAGATTGGATCTGTAC 57.447 34.615 0.00 0.00 40.13 2.90
54 55 8.156820 TGAGAAAAGAAAGATTGGATCTGTACA 58.843 33.333 0.00 0.00 40.13 2.90
55 56 8.924511 AGAAAAGAAAGATTGGATCTGTACAA 57.075 30.769 0.00 0.00 40.13 2.41
56 57 8.787852 AGAAAAGAAAGATTGGATCTGTACAAC 58.212 33.333 0.00 0.00 40.13 3.32
57 58 7.454260 AAAGAAAGATTGGATCTGTACAACC 57.546 36.000 0.00 1.80 40.13 3.77
58 59 5.501156 AGAAAGATTGGATCTGTACAACCC 58.499 41.667 0.00 0.00 40.13 4.11
59 60 4.927267 AAGATTGGATCTGTACAACCCA 57.073 40.909 0.00 1.67 40.13 4.51
60 61 4.927267 AGATTGGATCTGTACAACCCAA 57.073 40.909 19.28 19.28 40.65 4.12
61 62 5.255397 AGATTGGATCTGTACAACCCAAA 57.745 39.130 20.27 9.58 39.91 3.28
62 63 5.640147 AGATTGGATCTGTACAACCCAAAA 58.360 37.500 20.27 6.19 39.91 2.44
63 64 5.711976 AGATTGGATCTGTACAACCCAAAAG 59.288 40.000 20.27 0.00 39.91 2.27
64 65 3.761897 TGGATCTGTACAACCCAAAAGG 58.238 45.455 7.76 0.00 43.78 3.11
65 66 9.559778 AGATTGGATCTGTACAACCCAAAAGGT 62.560 40.741 20.27 9.40 45.19 3.50
74 75 2.676471 CCAAAAGGTGGCCTCCGG 60.676 66.667 18.02 9.47 41.72 5.14
75 76 2.115266 CAAAAGGTGGCCTCCGGT 59.885 61.111 18.02 7.69 30.89 5.28
76 77 1.971695 CAAAAGGTGGCCTCCGGTC 60.972 63.158 18.02 0.00 30.89 4.79
77 78 3.546714 AAAAGGTGGCCTCCGGTCG 62.547 63.158 18.02 0.00 30.89 4.79
80 81 4.324991 GGTGGCCTCCGGTCGTTT 62.325 66.667 8.37 0.00 0.00 3.60
81 82 2.658422 GTGGCCTCCGGTCGTTTA 59.342 61.111 3.32 0.00 0.00 2.01
82 83 1.219935 GTGGCCTCCGGTCGTTTAT 59.780 57.895 3.32 0.00 0.00 1.40
83 84 0.461135 GTGGCCTCCGGTCGTTTATA 59.539 55.000 3.32 0.00 0.00 0.98
84 85 1.069668 GTGGCCTCCGGTCGTTTATAT 59.930 52.381 3.32 0.00 0.00 0.86
85 86 2.297033 GTGGCCTCCGGTCGTTTATATA 59.703 50.000 3.32 0.00 0.00 0.86
86 87 2.297033 TGGCCTCCGGTCGTTTATATAC 59.703 50.000 3.32 0.00 0.00 1.47
87 88 2.560105 GGCCTCCGGTCGTTTATATACT 59.440 50.000 0.00 0.00 0.00 2.12
88 89 3.006217 GGCCTCCGGTCGTTTATATACTT 59.994 47.826 0.00 0.00 0.00 2.24
89 90 3.985925 GCCTCCGGTCGTTTATATACTTG 59.014 47.826 0.00 0.00 0.00 3.16
90 91 3.985925 CCTCCGGTCGTTTATATACTTGC 59.014 47.826 0.00 0.00 0.00 4.01
91 92 3.631144 TCCGGTCGTTTATATACTTGCG 58.369 45.455 0.00 0.00 0.00 4.85
92 93 2.154389 CCGGTCGTTTATATACTTGCGC 59.846 50.000 0.00 0.00 0.00 6.09
93 94 3.047796 CGGTCGTTTATATACTTGCGCT 58.952 45.455 9.73 0.00 0.00 5.92
94 95 3.119136 CGGTCGTTTATATACTTGCGCTC 59.881 47.826 9.73 0.00 0.00 5.03
95 96 4.296690 GGTCGTTTATATACTTGCGCTCT 58.703 43.478 9.73 0.00 0.00 4.09
96 97 5.455392 GGTCGTTTATATACTTGCGCTCTA 58.545 41.667 9.73 0.00 0.00 2.43
97 98 5.568296 GGTCGTTTATATACTTGCGCTCTAG 59.432 44.000 9.73 6.06 0.00 2.43
98 99 5.568296 GTCGTTTATATACTTGCGCTCTAGG 59.432 44.000 9.73 0.00 0.00 3.02
99 100 4.857588 CGTTTATATACTTGCGCTCTAGGG 59.142 45.833 9.73 0.00 0.00 3.53
107 108 4.192000 CGCTCTAGGGCACAACTG 57.808 61.111 16.47 0.00 0.00 3.16
108 109 1.448540 CGCTCTAGGGCACAACTGG 60.449 63.158 16.47 0.00 0.00 4.00
109 110 1.746991 GCTCTAGGGCACAACTGGC 60.747 63.158 10.54 0.00 42.39 4.85
110 111 1.679311 CTCTAGGGCACAACTGGCA 59.321 57.895 0.00 0.00 44.99 4.92
111 112 0.036732 CTCTAGGGCACAACTGGCAA 59.963 55.000 0.00 0.00 44.99 4.52
112 113 0.036732 TCTAGGGCACAACTGGCAAG 59.963 55.000 0.00 0.00 44.99 4.01
113 114 1.589716 CTAGGGCACAACTGGCAAGC 61.590 60.000 0.00 0.00 44.99 4.01
114 115 3.994853 GGGCACAACTGGCAAGCC 61.995 66.667 3.61 3.61 44.99 4.35
115 116 4.347453 GGCACAACTGGCAAGCCG 62.347 66.667 6.60 4.13 42.66 5.52
117 118 2.594303 CACAACTGGCAAGCCGGA 60.594 61.111 25.82 0.00 45.10 5.14
118 119 1.973281 CACAACTGGCAAGCCGGAT 60.973 57.895 25.82 12.02 45.10 4.18
119 120 0.676466 CACAACTGGCAAGCCGGATA 60.676 55.000 25.82 0.00 45.10 2.59
120 121 0.255890 ACAACTGGCAAGCCGGATAT 59.744 50.000 25.82 9.05 45.10 1.63
121 122 1.488812 ACAACTGGCAAGCCGGATATA 59.511 47.619 25.82 0.00 45.10 0.86
122 123 1.873591 CAACTGGCAAGCCGGATATAC 59.126 52.381 25.82 0.00 45.10 1.47
123 124 1.128200 ACTGGCAAGCCGGATATACA 58.872 50.000 25.82 0.00 45.10 2.29
124 125 1.488812 ACTGGCAAGCCGGATATACAA 59.511 47.619 25.82 0.00 45.10 2.41
125 126 2.146342 CTGGCAAGCCGGATATACAAG 58.854 52.381 14.79 0.00 45.10 3.16
126 127 1.765904 TGGCAAGCCGGATATACAAGA 59.234 47.619 5.05 0.00 39.42 3.02
127 128 2.371841 TGGCAAGCCGGATATACAAGAT 59.628 45.455 5.05 0.00 39.42 2.40
128 129 3.580895 TGGCAAGCCGGATATACAAGATA 59.419 43.478 5.05 0.00 39.42 1.98
129 130 4.184629 GGCAAGCCGGATATACAAGATAG 58.815 47.826 5.05 0.00 0.00 2.08
130 131 4.081642 GGCAAGCCGGATATACAAGATAGA 60.082 45.833 5.05 0.00 0.00 1.98
131 132 5.395768 GGCAAGCCGGATATACAAGATAGAT 60.396 44.000 5.05 0.00 0.00 1.98
132 133 6.183360 GGCAAGCCGGATATACAAGATAGATA 60.183 42.308 5.05 0.00 0.00 1.98
133 134 6.697892 GCAAGCCGGATATACAAGATAGATAC 59.302 42.308 5.05 0.00 0.00 2.24
134 135 7.630728 GCAAGCCGGATATACAAGATAGATACA 60.631 40.741 5.05 0.00 0.00 2.29
135 136 7.956328 AGCCGGATATACAAGATAGATACAA 57.044 36.000 5.05 0.00 0.00 2.41
136 137 8.001881 AGCCGGATATACAAGATAGATACAAG 57.998 38.462 5.05 0.00 0.00 3.16
137 138 7.834681 AGCCGGATATACAAGATAGATACAAGA 59.165 37.037 5.05 0.00 0.00 3.02
138 139 8.634444 GCCGGATATACAAGATAGATACAAGAT 58.366 37.037 5.05 0.00 0.00 2.40
145 146 9.836864 ATACAAGATAGATACAAGATTGTTGCA 57.163 29.630 3.14 0.00 42.35 4.08
146 147 8.206325 ACAAGATAGATACAAGATTGTTGCAG 57.794 34.615 3.14 0.00 42.35 4.41
147 148 7.281774 ACAAGATAGATACAAGATTGTTGCAGG 59.718 37.037 3.14 0.00 42.35 4.85
148 149 7.129457 AGATAGATACAAGATTGTTGCAGGA 57.871 36.000 3.14 0.00 42.35 3.86
149 150 7.215789 AGATAGATACAAGATTGTTGCAGGAG 58.784 38.462 3.14 0.00 42.35 3.69
150 151 5.426689 AGATACAAGATTGTTGCAGGAGA 57.573 39.130 3.14 0.00 42.35 3.71
151 152 5.999044 AGATACAAGATTGTTGCAGGAGAT 58.001 37.500 3.14 0.00 42.35 2.75
152 153 7.129457 AGATACAAGATTGTTGCAGGAGATA 57.871 36.000 3.14 0.00 42.35 1.98
153 154 7.568349 AGATACAAGATTGTTGCAGGAGATAA 58.432 34.615 3.14 0.00 42.35 1.75
154 155 7.714377 AGATACAAGATTGTTGCAGGAGATAAG 59.286 37.037 3.14 0.00 42.35 1.73
155 156 4.946157 ACAAGATTGTTGCAGGAGATAAGG 59.054 41.667 0.00 0.00 38.47 2.69
156 157 5.188434 CAAGATTGTTGCAGGAGATAAGGA 58.812 41.667 0.00 0.00 0.00 3.36
157 158 5.643421 AGATTGTTGCAGGAGATAAGGAT 57.357 39.130 0.00 0.00 0.00 3.24
158 159 6.011122 AGATTGTTGCAGGAGATAAGGATT 57.989 37.500 0.00 0.00 0.00 3.01
159 160 7.141758 AGATTGTTGCAGGAGATAAGGATTA 57.858 36.000 0.00 0.00 33.48 1.75
160 161 6.995091 AGATTGTTGCAGGAGATAAGGATTAC 59.005 38.462 0.00 0.00 30.46 1.89
161 162 5.692115 TGTTGCAGGAGATAAGGATTACA 57.308 39.130 0.00 0.00 30.46 2.41
162 163 5.674525 TGTTGCAGGAGATAAGGATTACAG 58.325 41.667 0.00 0.00 30.46 2.74
163 164 4.963318 TGCAGGAGATAAGGATTACAGG 57.037 45.455 0.00 0.00 30.46 4.00
164 165 4.556697 TGCAGGAGATAAGGATTACAGGA 58.443 43.478 0.00 0.00 30.46 3.86
165 166 4.590647 TGCAGGAGATAAGGATTACAGGAG 59.409 45.833 0.00 0.00 30.46 3.69
166 167 4.835615 GCAGGAGATAAGGATTACAGGAGA 59.164 45.833 0.00 0.00 30.46 3.71
167 168 5.483583 GCAGGAGATAAGGATTACAGGAGAT 59.516 44.000 0.00 0.00 30.46 2.75
168 169 6.665680 GCAGGAGATAAGGATTACAGGAGATA 59.334 42.308 0.00 0.00 30.46 1.98
169 170 7.179338 GCAGGAGATAAGGATTACAGGAGATAA 59.821 40.741 0.00 0.00 30.46 1.75
170 171 8.748412 CAGGAGATAAGGATTACAGGAGATAAG 58.252 40.741 0.00 0.00 30.46 1.73
171 172 8.683445 AGGAGATAAGGATTACAGGAGATAAGA 58.317 37.037 0.00 0.00 30.46 2.10
172 173 8.966868 GGAGATAAGGATTACAGGAGATAAGAG 58.033 40.741 0.00 0.00 30.46 2.85
173 174 9.747898 GAGATAAGGATTACAGGAGATAAGAGA 57.252 37.037 0.00 0.00 30.46 3.10
185 186 9.482175 ACAGGAGATAAGAGATACTAACAAACT 57.518 33.333 0.00 0.00 0.00 2.66
186 187 9.959749 CAGGAGATAAGAGATACTAACAAACTC 57.040 37.037 0.00 0.00 0.00 3.01
187 188 9.930158 AGGAGATAAGAGATACTAACAAACTCT 57.070 33.333 0.00 0.00 39.21 3.24
195 196 9.694137 AGAGATACTAACAAACTCTTGTACAAC 57.306 33.333 3.59 0.00 45.25 3.32
196 197 9.472361 GAGATACTAACAAACTCTTGTACAACA 57.528 33.333 3.59 0.00 45.25 3.33
197 198 9.998106 AGATACTAACAAACTCTTGTACAACAT 57.002 29.630 3.59 0.00 45.25 2.71
199 200 9.998106 ATACTAACAAACTCTTGTACAACATCT 57.002 29.630 3.59 0.00 45.25 2.90
201 202 9.257651 ACTAACAAACTCTTGTACAACATCTAC 57.742 33.333 3.59 0.00 45.25 2.59
202 203 9.256477 CTAACAAACTCTTGTACAACATCTACA 57.744 33.333 3.59 0.00 45.25 2.74
203 204 8.677148 AACAAACTCTTGTACAACATCTACAT 57.323 30.769 3.59 0.00 45.25 2.29
204 205 8.087982 ACAAACTCTTGTACAACATCTACATG 57.912 34.615 3.59 0.00 44.14 3.21
205 206 7.715249 ACAAACTCTTGTACAACATCTACATGT 59.285 33.333 3.59 2.69 44.14 3.21
218 219 7.817418 ACATCTACATGTTTAACACCTTTGT 57.183 32.000 2.30 3.64 40.66 2.83
219 220 7.648142 ACATCTACATGTTTAACACCTTTGTG 58.352 34.615 2.30 3.14 40.66 3.33
220 221 7.500892 ACATCTACATGTTTAACACCTTTGTGA 59.499 33.333 2.30 7.71 41.76 3.58
221 222 7.867305 TCTACATGTTTAACACCTTTGTGAA 57.133 32.000 2.30 0.00 45.76 3.18
222 223 7.925993 TCTACATGTTTAACACCTTTGTGAAG 58.074 34.615 2.30 3.67 45.76 3.02
223 224 5.348164 ACATGTTTAACACCTTTGTGAAGC 58.652 37.500 0.00 0.00 45.76 3.86
224 225 4.022464 TGTTTAACACCTTTGTGAAGCG 57.978 40.909 0.00 0.00 45.76 4.68
225 226 3.440872 TGTTTAACACCTTTGTGAAGCGT 59.559 39.130 0.00 0.00 45.76 5.07
226 227 3.684103 TTAACACCTTTGTGAAGCGTG 57.316 42.857 0.00 0.00 45.76 5.34
227 228 1.745232 AACACCTTTGTGAAGCGTGA 58.255 45.000 0.00 0.00 45.76 4.35
228 229 1.014352 ACACCTTTGTGAAGCGTGAC 58.986 50.000 0.00 0.00 45.76 3.67
229 230 1.013596 CACCTTTGTGAAGCGTGACA 58.986 50.000 0.00 0.00 45.76 3.58
230 231 1.400142 CACCTTTGTGAAGCGTGACAA 59.600 47.619 0.00 0.00 45.76 3.18
231 232 2.088423 ACCTTTGTGAAGCGTGACAAA 58.912 42.857 15.48 15.48 39.24 2.83
232 233 2.159435 ACCTTTGTGAAGCGTGACAAAC 60.159 45.455 12.77 0.00 37.19 2.93
233 234 2.097466 CCTTTGTGAAGCGTGACAAACT 59.903 45.455 12.77 0.00 37.19 2.66
234 235 3.354397 CTTTGTGAAGCGTGACAAACTC 58.646 45.455 12.77 0.00 37.19 3.01
235 236 2.309528 TGTGAAGCGTGACAAACTCT 57.690 45.000 0.00 0.00 0.00 3.24
236 237 2.627945 TGTGAAGCGTGACAAACTCTT 58.372 42.857 0.00 0.00 36.53 2.85
237 238 2.351418 TGTGAAGCGTGACAAACTCTTG 59.649 45.455 0.00 0.00 33.96 3.02
238 239 1.330521 TGAAGCGTGACAAACTCTTGC 59.669 47.619 0.00 0.00 33.96 4.01
239 240 1.330521 GAAGCGTGACAAACTCTTGCA 59.669 47.619 0.00 0.00 33.96 4.08
240 241 1.378531 AGCGTGACAAACTCTTGCAA 58.621 45.000 0.00 0.00 35.84 4.08
241 242 1.742831 AGCGTGACAAACTCTTGCAAA 59.257 42.857 0.00 0.00 35.84 3.68
242 243 2.163412 AGCGTGACAAACTCTTGCAAAA 59.837 40.909 0.00 0.00 35.84 2.44
243 244 2.920490 GCGTGACAAACTCTTGCAAAAA 59.080 40.909 0.00 0.00 35.84 1.94
270 271 9.463443 AAACTGAACTAGACAAATTTGTTATGC 57.537 29.630 24.02 11.83 42.43 3.14
271 272 8.396272 ACTGAACTAGACAAATTTGTTATGCT 57.604 30.769 24.02 17.86 42.43 3.79
272 273 8.850156 ACTGAACTAGACAAATTTGTTATGCTT 58.150 29.630 24.02 12.19 42.43 3.91
273 274 9.121517 CTGAACTAGACAAATTTGTTATGCTTG 57.878 33.333 24.02 17.88 42.43 4.01
274 275 7.594758 TGAACTAGACAAATTTGTTATGCTTGC 59.405 33.333 24.02 9.41 42.43 4.01
275 276 7.219484 ACTAGACAAATTTGTTATGCTTGCT 57.781 32.000 24.02 15.60 42.43 3.91
276 277 8.335532 ACTAGACAAATTTGTTATGCTTGCTA 57.664 30.769 24.02 15.86 42.43 3.49
277 278 8.792633 ACTAGACAAATTTGTTATGCTTGCTAA 58.207 29.630 24.02 1.98 42.43 3.09
278 279 9.624697 CTAGACAAATTTGTTATGCTTGCTAAA 57.375 29.630 24.02 1.36 42.43 1.85
279 280 8.885494 AGACAAATTTGTTATGCTTGCTAAAA 57.115 26.923 24.02 0.00 42.43 1.52
280 281 9.323985 AGACAAATTTGTTATGCTTGCTAAAAA 57.676 25.926 24.02 0.00 42.43 1.94
299 300 4.335400 AAAAAGTTGCCATCCACGATTT 57.665 36.364 0.00 0.00 0.00 2.17
300 301 4.335400 AAAAGTTGCCATCCACGATTTT 57.665 36.364 0.00 0.00 0.00 1.82
301 302 4.335400 AAAGTTGCCATCCACGATTTTT 57.665 36.364 0.00 0.00 0.00 1.94
344 345 8.586273 CACAAATTACCATCAAAATCATTCGAC 58.414 33.333 0.00 0.00 0.00 4.20
346 347 9.357652 CAAATTACCATCAAAATCATTCGACTT 57.642 29.630 0.00 0.00 0.00 3.01
349 350 6.573664 ACCATCAAAATCATTCGACTTGAA 57.426 33.333 1.66 0.00 41.81 2.69
388 389 3.680789 GTTCGCTGGTTATGAAAATCCG 58.319 45.455 0.00 0.00 0.00 4.18
395 396 6.237542 CGCTGGTTATGAAAATCCGAAAAATG 60.238 38.462 0.00 0.00 0.00 2.32
413 414 7.948363 CGAAAAATGAAAAATCTTGATGCAGAC 59.052 33.333 0.00 0.00 0.00 3.51
456 457 6.763715 ATAAACCCATACCAGCAATCTCTA 57.236 37.500 0.00 0.00 0.00 2.43
484 485 1.262640 CGCTACAGGTACAACCCCCT 61.263 60.000 0.00 0.00 39.75 4.79
502 506 3.118371 CCCCTAACAGCGAACTTATTCCT 60.118 47.826 0.00 0.00 0.00 3.36
504 508 3.309954 CCTAACAGCGAACTTATTCCTGC 59.690 47.826 0.00 0.00 36.96 4.85
523 527 1.805120 GCTGCCAATCATCCATTGCAC 60.805 52.381 0.00 0.00 40.75 4.57
536 540 2.372264 CATTGCACCCTAGCACATCTT 58.628 47.619 0.00 0.00 45.61 2.40
537 541 3.544684 CATTGCACCCTAGCACATCTTA 58.455 45.455 0.00 0.00 45.61 2.10
538 542 2.691409 TGCACCCTAGCACATCTTAC 57.309 50.000 0.00 0.00 40.11 2.34
539 543 1.905894 TGCACCCTAGCACATCTTACA 59.094 47.619 0.00 0.00 40.11 2.41
540 544 2.505407 TGCACCCTAGCACATCTTACAT 59.495 45.455 0.00 0.00 40.11 2.29
541 545 3.134458 GCACCCTAGCACATCTTACATC 58.866 50.000 0.00 0.00 0.00 3.06
542 546 3.181461 GCACCCTAGCACATCTTACATCT 60.181 47.826 0.00 0.00 0.00 2.90
591 608 0.178533 AACTGAAACGTCAACCCCGA 59.821 50.000 0.00 0.00 31.88 5.14
614 631 0.183731 GGGAGCCGAGGAAAATCCAT 59.816 55.000 0.00 0.00 39.61 3.41
844 873 4.489771 CCAGCCCACCACCGGATC 62.490 72.222 9.46 0.00 0.00 3.36
1102 1149 0.107459 GACCAGAGGCCATGGACTTC 60.107 60.000 24.53 11.90 40.51 3.01
1117 1164 1.825474 GACTTCTACTACCAGCAGGCA 59.175 52.381 0.00 0.00 39.06 4.75
1119 1166 1.137872 CTTCTACTACCAGCAGGCAGG 59.862 57.143 0.00 0.68 39.06 4.85
1432 1497 1.335132 GCATACCCTGGTCCGAGGAA 61.335 60.000 4.02 0.00 34.69 3.36
1486 1559 7.806409 TCTCTTTTGTTCAGTCATCAATCAA 57.194 32.000 0.00 0.00 0.00 2.57
1490 1563 6.852858 TTTGTTCAGTCATCAATCAACGTA 57.147 33.333 0.00 0.00 0.00 3.57
1529 1641 3.282885 GAGATTCTTCCGGCCATCTTTT 58.717 45.455 2.24 0.00 0.00 2.27
1705 1850 3.003113 GCTGGAGAAGTACGGGCGT 62.003 63.158 0.00 0.00 0.00 5.68
1880 2037 1.675219 GCGACCCACTCCCTTGTTA 59.325 57.895 0.00 0.00 0.00 2.41
1891 2052 0.098728 CCCTTGTTAAATCGCCGCTG 59.901 55.000 0.00 0.00 0.00 5.18
1894 2055 1.663643 CTTGTTAAATCGCCGCTGCTA 59.336 47.619 0.00 0.00 34.43 3.49
2002 2189 2.030562 CAACTTGGCTCGGACGGT 59.969 61.111 0.00 0.00 0.00 4.83
2052 2242 8.684520 TGGTTTAGTGTCTACTAGCTAGATTTC 58.315 37.037 27.45 14.02 40.33 2.17
2095 2285 1.403679 TGGAGTTTGACGTGGCAAAAG 59.596 47.619 1.75 0.00 39.26 2.27
2097 2287 2.098443 GGAGTTTGACGTGGCAAAAGAA 59.902 45.455 1.75 0.00 39.26 2.52
2220 2422 3.495629 CCGGTCCATGAGATGAATGACAT 60.496 47.826 0.00 0.00 42.47 3.06
2239 2441 2.358125 TGTTGCCGGTGATGGACG 60.358 61.111 1.90 0.00 0.00 4.79
2290 2493 0.033504 GGCGAACTCCTCTGTGTCAA 59.966 55.000 0.00 0.00 0.00 3.18
2301 2504 0.738389 CTGTGTCAAAAACGGCAGGT 59.262 50.000 0.00 0.00 32.87 4.00
2302 2505 1.134175 CTGTGTCAAAAACGGCAGGTT 59.866 47.619 0.00 0.00 41.76 3.50
2373 2576 4.940654 CCTTTCAGGGATTCTTCTTGTCTC 59.059 45.833 0.00 0.00 0.00 3.36
2456 2662 0.248134 CTCCGTCGTCGATTGTCTCC 60.248 60.000 2.98 0.00 39.71 3.71
2460 2666 1.467543 CGTCGTCGATTGTCTCCATGT 60.468 52.381 0.00 0.00 39.71 3.21
2468 2674 4.160252 TCGATTGTCTCCATGTCATTCAGA 59.840 41.667 0.00 0.00 0.00 3.27
2494 2700 2.265739 GGAGCGTGGACTGCATCA 59.734 61.111 0.00 0.00 33.85 3.07
2498 2704 1.022982 AGCGTGGACTGCATCACATG 61.023 55.000 13.06 0.00 33.83 3.21
2508 2714 5.506815 GGACTGCATCACATGGACAATATTG 60.507 44.000 14.01 14.01 0.00 1.90
2509 2715 4.951715 ACTGCATCACATGGACAATATTGT 59.048 37.500 20.93 20.93 45.65 2.71
2554 2760 7.624360 AATGCTTACAATATTTTCTCGGTGA 57.376 32.000 0.00 0.00 0.00 4.02
2596 2804 0.393077 AGACCACGGTGGAACTTCAG 59.607 55.000 32.72 4.71 40.96 3.02
2597 2805 0.391597 GACCACGGTGGAACTTCAGA 59.608 55.000 32.72 0.00 40.96 3.27
2642 2850 4.675146 GCAACGAATACTCCAACTACGGTA 60.675 45.833 0.00 0.00 0.00 4.02
2643 2851 4.889832 ACGAATACTCCAACTACGGTAG 57.110 45.455 13.49 13.49 0.00 3.18
2645 2853 4.095483 ACGAATACTCCAACTACGGTAGTG 59.905 45.833 20.72 14.13 39.39 2.74
2646 2854 4.333649 CGAATACTCCAACTACGGTAGTGA 59.666 45.833 20.72 13.49 39.39 3.41
2648 2856 6.388435 AATACTCCAACTACGGTAGTGATC 57.612 41.667 20.72 0.00 39.39 2.92
2649 2857 3.022406 ACTCCAACTACGGTAGTGATCC 58.978 50.000 20.72 0.00 39.39 3.36
2650 2858 2.361438 CTCCAACTACGGTAGTGATCCC 59.639 54.545 20.72 0.00 39.39 3.85
2654 2862 4.342951 CCAACTACGGTAGTGATCCCATTA 59.657 45.833 20.72 0.00 39.39 1.90
2656 2864 5.723672 ACTACGGTAGTGATCCCATTATG 57.276 43.478 19.47 0.00 37.69 1.90
2662 2872 8.375493 ACGGTAGTGATCCCATTATGTATTAT 57.625 34.615 0.00 0.00 0.00 1.28
2664 2874 9.667107 CGGTAGTGATCCCATTATGTATTATTT 57.333 33.333 0.00 0.00 0.00 1.40
2686 2896 7.797038 TTTTTGGACAAAAGAGTAGTAGACC 57.203 36.000 9.80 0.00 40.83 3.85
2692 2902 5.785243 ACAAAAGAGTAGTAGACCTGCTTC 58.215 41.667 0.00 0.00 36.11 3.86
2697 2907 6.420913 AGAGTAGTAGACCTGCTTCAAAAA 57.579 37.500 0.00 0.00 36.11 1.94
2698 2908 7.010339 AGAGTAGTAGACCTGCTTCAAAAAT 57.990 36.000 0.00 0.00 36.11 1.82
2699 2909 6.876257 AGAGTAGTAGACCTGCTTCAAAAATG 59.124 38.462 0.00 0.00 36.11 2.32
2700 2910 6.769512 AGTAGTAGACCTGCTTCAAAAATGA 58.230 36.000 0.00 0.00 31.23 2.57
2702 2912 6.959639 AGTAGACCTGCTTCAAAAATGAAA 57.040 33.333 0.00 0.00 0.00 2.69
2703 2913 7.346751 AGTAGACCTGCTTCAAAAATGAAAA 57.653 32.000 0.00 0.00 0.00 2.29
2704 2914 7.428826 AGTAGACCTGCTTCAAAAATGAAAAG 58.571 34.615 0.00 0.00 0.00 2.27
2706 2916 7.346751 AGACCTGCTTCAAAAATGAAAAGTA 57.653 32.000 0.00 0.00 0.00 2.24
2707 2917 7.428826 AGACCTGCTTCAAAAATGAAAAGTAG 58.571 34.615 0.00 0.00 33.06 2.57
2709 2919 8.232913 ACCTGCTTCAAAAATGAAAAGTAGTA 57.767 30.769 0.00 0.00 31.85 1.82
2710 2920 8.352942 ACCTGCTTCAAAAATGAAAAGTAGTAG 58.647 33.333 0.00 0.00 31.85 2.57
2711 2921 8.567948 CCTGCTTCAAAAATGAAAAGTAGTAGA 58.432 33.333 0.00 0.00 31.85 2.59
2713 2923 8.349983 TGCTTCAAAAATGAAAAGTAGTAGACC 58.650 33.333 0.00 0.00 0.00 3.85
2714 2924 8.568794 GCTTCAAAAATGAAAAGTAGTAGACCT 58.431 33.333 0.00 0.00 0.00 3.85
2715 2925 9.884465 CTTCAAAAATGAAAAGTAGTAGACCTG 57.116 33.333 0.00 0.00 0.00 4.00
2716 2926 7.871853 TCAAAAATGAAAAGTAGTAGACCTGC 58.128 34.615 0.00 0.00 0.00 4.85
2719 2929 7.674471 AAATGAAAAGTAGTAGACCTGCTTC 57.326 36.000 0.00 0.00 44.27 3.86
2721 2931 6.169557 TGAAAAGTAGTAGACCTGCTTCAA 57.830 37.500 0.00 0.00 44.27 2.69
2723 2933 6.482308 TGAAAAGTAGTAGACCTGCTTCAAAC 59.518 38.462 0.00 0.00 44.27 2.93
2724 2934 5.810080 AAGTAGTAGACCTGCTTCAAACT 57.190 39.130 0.00 0.00 41.68 2.66
2725 2935 5.394224 AGTAGTAGACCTGCTTCAAACTC 57.606 43.478 0.00 0.00 31.23 3.01
2726 2936 4.833380 AGTAGTAGACCTGCTTCAAACTCA 59.167 41.667 0.00 0.00 31.23 3.41
2727 2937 4.264460 AGTAGACCTGCTTCAAACTCAG 57.736 45.455 0.00 0.00 0.00 3.35
2728 2938 1.889545 AGACCTGCTTCAAACTCAGC 58.110 50.000 0.00 0.00 36.49 4.26
2729 2939 0.877743 GACCTGCTTCAAACTCAGCC 59.122 55.000 0.00 0.00 34.91 4.85
2731 2941 1.246737 CCTGCTTCAAACTCAGCCCC 61.247 60.000 0.00 0.00 34.91 5.80
2732 2942 0.538057 CTGCTTCAAACTCAGCCCCA 60.538 55.000 0.00 0.00 34.91 4.96
2733 2943 0.538057 TGCTTCAAACTCAGCCCCAG 60.538 55.000 0.00 0.00 34.91 4.45
2735 2945 1.242076 CTTCAAACTCAGCCCCAGTG 58.758 55.000 0.00 0.00 0.00 3.66
2736 2946 0.843309 TTCAAACTCAGCCCCAGTGA 59.157 50.000 0.00 0.00 0.00 3.41
2745 3114 1.136828 AGCCCCAGTGAACTGTACAA 58.863 50.000 9.49 0.00 42.27 2.41
2746 3115 1.072331 AGCCCCAGTGAACTGTACAAG 59.928 52.381 9.49 0.00 42.27 3.16
2809 3178 0.536460 TTTTGGAACTCGGTCCCAGC 60.536 55.000 0.00 0.00 36.80 4.85
2810 3179 1.701031 TTTGGAACTCGGTCCCAGCA 61.701 55.000 0.00 0.00 36.80 4.41
2819 3188 2.167693 CTCGGTCCCAGCAAACTGTATA 59.832 50.000 0.00 0.00 42.81 1.47
2820 3189 2.568062 TCGGTCCCAGCAAACTGTATAA 59.432 45.455 0.00 0.00 42.81 0.98
2821 3190 2.936498 CGGTCCCAGCAAACTGTATAAG 59.064 50.000 0.00 0.00 42.81 1.73
2822 3191 2.683362 GGTCCCAGCAAACTGTATAAGC 59.317 50.000 0.00 0.00 42.81 3.09
2823 3192 3.343617 GTCCCAGCAAACTGTATAAGCA 58.656 45.455 0.00 0.00 42.81 3.91
2824 3193 3.947834 GTCCCAGCAAACTGTATAAGCAT 59.052 43.478 0.00 0.00 42.81 3.79
2825 3194 5.123227 GTCCCAGCAAACTGTATAAGCATA 58.877 41.667 0.00 0.00 42.81 3.14
2826 3195 5.765182 GTCCCAGCAAACTGTATAAGCATAT 59.235 40.000 0.00 0.00 42.81 1.78
2827 3196 6.934645 GTCCCAGCAAACTGTATAAGCATATA 59.065 38.462 0.00 0.00 42.81 0.86
2830 3199 8.883731 CCCAGCAAACTGTATAAGCATATATAC 58.116 37.037 7.16 7.16 42.81 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.193267 TCAAGTTTTACATGGCATCAGGC 59.807 43.478 0.00 0.00 43.74 4.85
9 10 4.701651 TCTCAAGTTTTACATGGCATCAGG 59.298 41.667 0.00 0.00 0.00 3.86
10 11 5.885230 TCTCAAGTTTTACATGGCATCAG 57.115 39.130 0.00 0.00 0.00 2.90
11 12 6.647334 TTTCTCAAGTTTTACATGGCATCA 57.353 33.333 0.00 0.00 0.00 3.07
12 13 7.370383 TCTTTTCTCAAGTTTTACATGGCATC 58.630 34.615 0.00 0.00 0.00 3.91
13 14 7.288810 TCTTTTCTCAAGTTTTACATGGCAT 57.711 32.000 0.00 0.00 0.00 4.40
14 15 6.707440 TCTTTTCTCAAGTTTTACATGGCA 57.293 33.333 0.00 0.00 0.00 4.92
15 16 7.920682 TCTTTCTTTTCTCAAGTTTTACATGGC 59.079 33.333 0.00 0.00 0.00 4.40
16 17 9.971922 ATCTTTCTTTTCTCAAGTTTTACATGG 57.028 29.630 0.00 0.00 0.00 3.66
19 20 9.801873 CCAATCTTTCTTTTCTCAAGTTTTACA 57.198 29.630 0.00 0.00 0.00 2.41
22 23 9.755804 GATCCAATCTTTCTTTTCTCAAGTTTT 57.244 29.630 0.00 0.00 0.00 2.43
23 24 9.140874 AGATCCAATCTTTCTTTTCTCAAGTTT 57.859 29.630 0.00 0.00 35.76 2.66
24 25 8.574737 CAGATCCAATCTTTCTTTTCTCAAGTT 58.425 33.333 0.00 0.00 37.58 2.66
25 26 7.723172 ACAGATCCAATCTTTCTTTTCTCAAGT 59.277 33.333 0.00 0.00 37.58 3.16
26 27 8.108551 ACAGATCCAATCTTTCTTTTCTCAAG 57.891 34.615 0.00 0.00 37.58 3.02
27 28 9.003658 GTACAGATCCAATCTTTCTTTTCTCAA 57.996 33.333 0.00 0.00 37.58 3.02
28 29 8.156820 TGTACAGATCCAATCTTTCTTTTCTCA 58.843 33.333 0.00 0.00 37.58 3.27
29 30 8.553459 TGTACAGATCCAATCTTTCTTTTCTC 57.447 34.615 0.00 0.00 37.58 2.87
30 31 8.787852 GTTGTACAGATCCAATCTTTCTTTTCT 58.212 33.333 0.00 0.00 37.58 2.52
31 32 8.023706 GGTTGTACAGATCCAATCTTTCTTTTC 58.976 37.037 0.00 0.00 37.58 2.29
32 33 7.039714 GGGTTGTACAGATCCAATCTTTCTTTT 60.040 37.037 13.22 0.00 37.58 2.27
33 34 6.434340 GGGTTGTACAGATCCAATCTTTCTTT 59.566 38.462 13.22 0.00 37.58 2.52
34 35 5.946377 GGGTTGTACAGATCCAATCTTTCTT 59.054 40.000 13.22 0.00 37.58 2.52
35 36 5.014123 TGGGTTGTACAGATCCAATCTTTCT 59.986 40.000 10.27 0.00 37.58 2.52
36 37 5.253330 TGGGTTGTACAGATCCAATCTTTC 58.747 41.667 10.27 0.00 37.58 2.62
37 38 5.255397 TGGGTTGTACAGATCCAATCTTT 57.745 39.130 10.27 0.00 37.58 2.52
38 39 4.927267 TGGGTTGTACAGATCCAATCTT 57.073 40.909 10.27 0.00 37.58 2.40
39 40 4.927267 TTGGGTTGTACAGATCCAATCT 57.073 40.909 17.21 0.00 41.15 2.40
40 41 5.105756 CCTTTTGGGTTGTACAGATCCAATC 60.106 44.000 20.00 0.00 37.34 2.67
41 42 4.772100 CCTTTTGGGTTGTACAGATCCAAT 59.228 41.667 20.00 0.00 37.34 3.16
42 43 4.148838 CCTTTTGGGTTGTACAGATCCAA 58.851 43.478 17.21 17.21 35.91 3.53
43 44 3.761897 CCTTTTGGGTTGTACAGATCCA 58.238 45.455 13.22 11.24 35.46 3.41
69 70 3.667261 CGCAAGTATATAAACGACCGGAG 59.333 47.826 9.46 3.87 0.00 4.63
70 71 3.631144 CGCAAGTATATAAACGACCGGA 58.369 45.455 9.46 0.00 0.00 5.14
71 72 2.154389 GCGCAAGTATATAAACGACCGG 59.846 50.000 0.30 0.00 41.68 5.28
72 73 3.047796 AGCGCAAGTATATAAACGACCG 58.952 45.455 11.47 0.00 41.68 4.79
73 74 4.296690 AGAGCGCAAGTATATAAACGACC 58.703 43.478 11.47 0.00 41.68 4.79
74 75 5.568296 CCTAGAGCGCAAGTATATAAACGAC 59.432 44.000 11.47 0.00 41.68 4.34
75 76 5.335426 CCCTAGAGCGCAAGTATATAAACGA 60.335 44.000 11.47 0.00 41.68 3.85
76 77 4.857588 CCCTAGAGCGCAAGTATATAAACG 59.142 45.833 11.47 0.00 41.68 3.60
77 78 4.626172 GCCCTAGAGCGCAAGTATATAAAC 59.374 45.833 11.47 0.00 41.68 2.01
78 79 4.282449 TGCCCTAGAGCGCAAGTATATAAA 59.718 41.667 11.47 0.00 41.68 1.40
79 80 3.830178 TGCCCTAGAGCGCAAGTATATAA 59.170 43.478 11.47 0.00 41.68 0.98
80 81 3.192844 GTGCCCTAGAGCGCAAGTATATA 59.807 47.826 11.47 0.00 42.87 0.86
81 82 2.028930 GTGCCCTAGAGCGCAAGTATAT 60.029 50.000 11.47 0.00 42.87 0.86
82 83 1.340248 GTGCCCTAGAGCGCAAGTATA 59.660 52.381 11.47 0.00 42.87 1.47
83 84 0.105039 GTGCCCTAGAGCGCAAGTAT 59.895 55.000 11.47 0.00 42.87 2.12
84 85 1.515954 GTGCCCTAGAGCGCAAGTA 59.484 57.895 11.47 0.00 42.87 2.24
85 86 2.266055 GTGCCCTAGAGCGCAAGT 59.734 61.111 11.47 0.00 42.87 3.16
89 90 2.103042 CAGTTGTGCCCTAGAGCGC 61.103 63.158 0.00 0.00 43.65 5.92
90 91 1.448540 CCAGTTGTGCCCTAGAGCG 60.449 63.158 0.00 0.00 34.65 5.03
91 92 1.746991 GCCAGTTGTGCCCTAGAGC 60.747 63.158 0.00 0.00 0.00 4.09
92 93 0.036732 TTGCCAGTTGTGCCCTAGAG 59.963 55.000 0.00 0.00 0.00 2.43
93 94 0.036732 CTTGCCAGTTGTGCCCTAGA 59.963 55.000 0.00 0.00 0.00 2.43
94 95 1.589716 GCTTGCCAGTTGTGCCCTAG 61.590 60.000 0.00 0.00 0.00 3.02
95 96 1.603455 GCTTGCCAGTTGTGCCCTA 60.603 57.895 0.00 0.00 0.00 3.53
96 97 2.914097 GCTTGCCAGTTGTGCCCT 60.914 61.111 0.00 0.00 0.00 5.19
97 98 3.994853 GGCTTGCCAGTTGTGCCC 61.995 66.667 6.79 0.00 37.81 5.36
98 99 4.347453 CGGCTTGCCAGTTGTGCC 62.347 66.667 12.45 0.00 40.14 5.01
99 100 4.347453 CCGGCTTGCCAGTTGTGC 62.347 66.667 12.45 0.00 0.00 4.57
100 101 0.676466 TATCCGGCTTGCCAGTTGTG 60.676 55.000 12.45 0.00 0.00 3.33
101 102 0.255890 ATATCCGGCTTGCCAGTTGT 59.744 50.000 12.45 0.00 0.00 3.32
102 103 1.873591 GTATATCCGGCTTGCCAGTTG 59.126 52.381 12.45 0.00 0.00 3.16
103 104 1.488812 TGTATATCCGGCTTGCCAGTT 59.511 47.619 12.45 0.00 0.00 3.16
104 105 1.128200 TGTATATCCGGCTTGCCAGT 58.872 50.000 12.45 0.00 0.00 4.00
105 106 2.146342 CTTGTATATCCGGCTTGCCAG 58.854 52.381 12.45 0.00 0.00 4.85
106 107 1.765904 TCTTGTATATCCGGCTTGCCA 59.234 47.619 12.45 0.00 0.00 4.92
107 108 2.543777 TCTTGTATATCCGGCTTGCC 57.456 50.000 0.00 0.75 0.00 4.52
108 109 5.073311 TCTATCTTGTATATCCGGCTTGC 57.927 43.478 0.00 0.00 0.00 4.01
109 110 7.772166 TGTATCTATCTTGTATATCCGGCTTG 58.228 38.462 0.00 0.00 0.00 4.01
110 111 7.956328 TGTATCTATCTTGTATATCCGGCTT 57.044 36.000 0.00 0.00 0.00 4.35
111 112 7.834681 TCTTGTATCTATCTTGTATATCCGGCT 59.165 37.037 0.00 0.00 0.00 5.52
112 113 7.997482 TCTTGTATCTATCTTGTATATCCGGC 58.003 38.462 0.00 0.00 0.00 6.13
119 120 9.836864 TGCAACAATCTTGTATCTATCTTGTAT 57.163 29.630 0.00 0.00 41.31 2.29
120 121 9.317936 CTGCAACAATCTTGTATCTATCTTGTA 57.682 33.333 0.00 0.00 41.31 2.41
121 122 7.281774 CCTGCAACAATCTTGTATCTATCTTGT 59.718 37.037 0.00 0.00 41.31 3.16
122 123 7.496920 TCCTGCAACAATCTTGTATCTATCTTG 59.503 37.037 0.00 0.00 41.31 3.02
123 124 7.568349 TCCTGCAACAATCTTGTATCTATCTT 58.432 34.615 0.00 0.00 41.31 2.40
124 125 7.070447 TCTCCTGCAACAATCTTGTATCTATCT 59.930 37.037 0.00 0.00 41.31 1.98
125 126 7.212976 TCTCCTGCAACAATCTTGTATCTATC 58.787 38.462 0.00 0.00 41.31 2.08
126 127 7.129457 TCTCCTGCAACAATCTTGTATCTAT 57.871 36.000 0.00 0.00 41.31 1.98
127 128 6.544928 TCTCCTGCAACAATCTTGTATCTA 57.455 37.500 0.00 0.00 41.31 1.98
128 129 5.426689 TCTCCTGCAACAATCTTGTATCT 57.573 39.130 0.00 0.00 41.31 1.98
129 130 7.041508 CCTTATCTCCTGCAACAATCTTGTATC 60.042 40.741 0.00 0.00 41.31 2.24
130 131 6.769822 CCTTATCTCCTGCAACAATCTTGTAT 59.230 38.462 0.00 0.00 41.31 2.29
131 132 6.070251 TCCTTATCTCCTGCAACAATCTTGTA 60.070 38.462 0.00 0.00 41.31 2.41
132 133 4.946157 CCTTATCTCCTGCAACAATCTTGT 59.054 41.667 0.00 0.00 44.72 3.16
133 134 5.188434 TCCTTATCTCCTGCAACAATCTTG 58.812 41.667 0.00 0.00 0.00 3.02
134 135 5.441718 TCCTTATCTCCTGCAACAATCTT 57.558 39.130 0.00 0.00 0.00 2.40
135 136 5.643421 ATCCTTATCTCCTGCAACAATCT 57.357 39.130 0.00 0.00 0.00 2.40
136 137 6.767902 TGTAATCCTTATCTCCTGCAACAATC 59.232 38.462 0.00 0.00 0.00 2.67
137 138 6.662755 TGTAATCCTTATCTCCTGCAACAAT 58.337 36.000 0.00 0.00 0.00 2.71
138 139 6.061022 TGTAATCCTTATCTCCTGCAACAA 57.939 37.500 0.00 0.00 0.00 2.83
139 140 5.396772 CCTGTAATCCTTATCTCCTGCAACA 60.397 44.000 0.00 0.00 0.00 3.33
140 141 5.059833 CCTGTAATCCTTATCTCCTGCAAC 58.940 45.833 0.00 0.00 0.00 4.17
141 142 4.968719 TCCTGTAATCCTTATCTCCTGCAA 59.031 41.667 0.00 0.00 0.00 4.08
142 143 4.556697 TCCTGTAATCCTTATCTCCTGCA 58.443 43.478 0.00 0.00 0.00 4.41
143 144 4.835615 TCTCCTGTAATCCTTATCTCCTGC 59.164 45.833 0.00 0.00 0.00 4.85
144 145 8.657387 TTATCTCCTGTAATCCTTATCTCCTG 57.343 38.462 0.00 0.00 0.00 3.86
145 146 8.683445 TCTTATCTCCTGTAATCCTTATCTCCT 58.317 37.037 0.00 0.00 0.00 3.69
146 147 8.887264 TCTTATCTCCTGTAATCCTTATCTCC 57.113 38.462 0.00 0.00 0.00 3.71
147 148 9.747898 TCTCTTATCTCCTGTAATCCTTATCTC 57.252 37.037 0.00 0.00 0.00 2.75
159 160 9.482175 AGTTTGTTAGTATCTCTTATCTCCTGT 57.518 33.333 0.00 0.00 0.00 4.00
160 161 9.959749 GAGTTTGTTAGTATCTCTTATCTCCTG 57.040 37.037 0.00 0.00 0.00 3.86
161 162 9.930158 AGAGTTTGTTAGTATCTCTTATCTCCT 57.070 33.333 0.00 0.00 32.52 3.69
169 170 9.694137 GTTGTACAAGAGTTTGTTAGTATCTCT 57.306 33.333 8.98 0.00 45.01 3.10
170 171 9.472361 TGTTGTACAAGAGTTTGTTAGTATCTC 57.528 33.333 8.98 0.00 45.01 2.75
171 172 9.998106 ATGTTGTACAAGAGTTTGTTAGTATCT 57.002 29.630 8.98 0.00 45.01 1.98
173 174 9.998106 AGATGTTGTACAAGAGTTTGTTAGTAT 57.002 29.630 8.98 0.00 45.01 2.12
175 176 9.257651 GTAGATGTTGTACAAGAGTTTGTTAGT 57.742 33.333 8.98 0.00 45.01 2.24
176 177 9.256477 TGTAGATGTTGTACAAGAGTTTGTTAG 57.744 33.333 8.98 0.00 45.01 2.34
177 178 9.772973 ATGTAGATGTTGTACAAGAGTTTGTTA 57.227 29.630 8.98 0.00 45.01 2.41
178 179 8.559536 CATGTAGATGTTGTACAAGAGTTTGTT 58.440 33.333 8.98 0.00 45.01 2.83
179 180 7.715249 ACATGTAGATGTTGTACAAGAGTTTGT 59.285 33.333 8.98 4.91 43.86 2.83
180 181 8.087982 ACATGTAGATGTTGTACAAGAGTTTG 57.912 34.615 8.98 4.34 40.05 2.93
192 193 8.134895 ACAAAGGTGTTAAACATGTAGATGTTG 58.865 33.333 18.06 5.85 42.60 3.33
193 194 8.134895 CACAAAGGTGTTAAACATGTAGATGTT 58.865 33.333 12.23 12.23 45.27 2.71
194 195 7.500892 TCACAAAGGTGTTAAACATGTAGATGT 59.499 33.333 0.00 0.00 44.04 3.06
195 196 7.870826 TCACAAAGGTGTTAAACATGTAGATG 58.129 34.615 0.00 0.00 45.45 2.90
196 197 8.458573 TTCACAAAGGTGTTAAACATGTAGAT 57.541 30.769 0.00 0.00 45.45 1.98
197 198 7.468084 GCTTCACAAAGGTGTTAAACATGTAGA 60.468 37.037 0.00 0.00 45.45 2.59
198 199 6.636850 GCTTCACAAAGGTGTTAAACATGTAG 59.363 38.462 0.00 0.00 45.45 2.74
199 200 6.500041 GCTTCACAAAGGTGTTAAACATGTA 58.500 36.000 0.00 0.00 45.45 2.29
200 201 5.348164 GCTTCACAAAGGTGTTAAACATGT 58.652 37.500 0.00 0.00 45.45 3.21
201 202 4.440758 CGCTTCACAAAGGTGTTAAACATG 59.559 41.667 0.00 0.00 45.45 3.21
202 203 4.097286 ACGCTTCACAAAGGTGTTAAACAT 59.903 37.500 0.00 0.00 45.45 2.71
203 204 3.440872 ACGCTTCACAAAGGTGTTAAACA 59.559 39.130 0.00 0.00 45.45 2.83
204 205 3.789224 CACGCTTCACAAAGGTGTTAAAC 59.211 43.478 0.00 0.00 45.45 2.01
205 206 3.690139 TCACGCTTCACAAAGGTGTTAAA 59.310 39.130 0.00 0.00 45.45 1.52
206 207 3.064271 GTCACGCTTCACAAAGGTGTTAA 59.936 43.478 0.00 0.00 45.45 2.01
207 208 2.610374 GTCACGCTTCACAAAGGTGTTA 59.390 45.455 0.00 0.00 45.45 2.41
208 209 1.400494 GTCACGCTTCACAAAGGTGTT 59.600 47.619 0.00 0.00 45.45 3.32
209 210 1.014352 GTCACGCTTCACAAAGGTGT 58.986 50.000 0.00 0.00 45.45 4.16
210 211 1.013596 TGTCACGCTTCACAAAGGTG 58.986 50.000 0.00 0.00 46.66 4.00
211 212 1.745232 TTGTCACGCTTCACAAAGGT 58.255 45.000 0.00 0.00 32.79 3.50
212 213 2.097466 AGTTTGTCACGCTTCACAAAGG 59.903 45.455 0.00 0.00 41.90 3.11
213 214 3.063997 AGAGTTTGTCACGCTTCACAAAG 59.936 43.478 0.00 0.00 41.90 2.77
214 215 3.006940 AGAGTTTGTCACGCTTCACAAA 58.993 40.909 0.00 0.00 39.61 2.83
215 216 2.627945 AGAGTTTGTCACGCTTCACAA 58.372 42.857 0.00 0.00 29.79 3.33
216 217 2.309528 AGAGTTTGTCACGCTTCACA 57.690 45.000 0.00 0.00 29.79 3.58
217 218 2.851008 GCAAGAGTTTGTCACGCTTCAC 60.851 50.000 0.00 0.00 43.13 3.18
218 219 1.330521 GCAAGAGTTTGTCACGCTTCA 59.669 47.619 0.00 0.00 43.13 3.02
219 220 1.330521 TGCAAGAGTTTGTCACGCTTC 59.669 47.619 0.00 0.00 43.13 3.86
220 221 1.378531 TGCAAGAGTTTGTCACGCTT 58.621 45.000 0.00 0.00 45.65 4.68
221 222 1.378531 TTGCAAGAGTTTGTCACGCT 58.621 45.000 0.00 0.00 37.06 5.07
222 223 2.187351 TTTGCAAGAGTTTGTCACGC 57.813 45.000 0.00 0.00 36.65 5.34
244 245 9.463443 GCATAACAAATTTGTCTAGTTCAGTTT 57.537 29.630 23.47 6.63 41.31 2.66
245 246 8.850156 AGCATAACAAATTTGTCTAGTTCAGTT 58.150 29.630 23.47 7.12 41.31 3.16
246 247 8.396272 AGCATAACAAATTTGTCTAGTTCAGT 57.604 30.769 23.47 7.82 41.31 3.41
247 248 9.121517 CAAGCATAACAAATTTGTCTAGTTCAG 57.878 33.333 23.47 9.42 41.31 3.02
248 249 7.594758 GCAAGCATAACAAATTTGTCTAGTTCA 59.405 33.333 23.47 4.69 41.31 3.18
249 250 7.809806 AGCAAGCATAACAAATTTGTCTAGTTC 59.190 33.333 23.47 11.08 41.31 3.01
250 251 7.661040 AGCAAGCATAACAAATTTGTCTAGTT 58.339 30.769 23.47 10.62 41.31 2.24
251 252 7.219484 AGCAAGCATAACAAATTTGTCTAGT 57.781 32.000 23.47 10.98 41.31 2.57
252 253 9.624697 TTTAGCAAGCATAACAAATTTGTCTAG 57.375 29.630 23.47 16.07 41.31 2.43
253 254 9.973450 TTTTAGCAAGCATAACAAATTTGTCTA 57.027 25.926 23.47 16.93 41.31 2.59
254 255 8.885494 TTTTAGCAAGCATAACAAATTTGTCT 57.115 26.923 23.47 13.48 41.31 3.41
278 279 4.335400 AAATCGTGGATGGCAACTTTTT 57.665 36.364 0.00 0.00 37.61 1.94
279 280 4.335400 AAAATCGTGGATGGCAACTTTT 57.665 36.364 0.00 0.00 37.61 2.27
280 281 4.335400 AAAAATCGTGGATGGCAACTTT 57.665 36.364 0.00 0.00 37.61 2.66
299 300 4.443621 TGTGTAGTCGTGGATGACAAAAA 58.556 39.130 1.96 0.00 41.41 1.94
300 301 4.061357 TGTGTAGTCGTGGATGACAAAA 57.939 40.909 1.96 0.00 41.41 2.44
301 302 3.737032 TGTGTAGTCGTGGATGACAAA 57.263 42.857 1.96 0.00 41.41 2.83
344 345 0.612732 TGCTGGGAGGGCATTTCAAG 60.613 55.000 0.00 0.00 34.56 3.02
346 347 0.178938 TTTGCTGGGAGGGCATTTCA 60.179 50.000 0.00 0.00 39.54 2.69
349 350 1.978617 CGTTTGCTGGGAGGGCATT 60.979 57.895 0.00 0.00 39.54 3.56
388 389 7.948363 CGTCTGCATCAAGATTTTTCATTTTTC 59.052 33.333 0.00 0.00 0.00 2.29
395 396 5.536554 TCTCGTCTGCATCAAGATTTTTC 57.463 39.130 0.00 0.00 0.00 2.29
401 402 4.082026 TGAAGATTCTCGTCTGCATCAAGA 60.082 41.667 0.00 0.00 28.58 3.02
432 433 6.018433 AGAGATTGCTGGTATGGGTTTATT 57.982 37.500 0.00 0.00 0.00 1.40
456 457 0.949397 TACCTGTAGCGCGAATCGAT 59.051 50.000 12.10 0.00 41.67 3.59
484 485 3.932710 CAGCAGGAATAAGTTCGCTGTTA 59.067 43.478 0.00 0.00 40.71 2.41
502 506 0.462375 GCAATGGATGATTGGCAGCA 59.538 50.000 0.00 0.00 41.74 4.41
504 508 1.202486 GGTGCAATGGATGATTGGCAG 60.202 52.381 0.00 0.00 41.74 4.85
523 527 5.757320 CAGAAAGATGTAAGATGTGCTAGGG 59.243 44.000 0.00 0.00 0.00 3.53
591 608 1.265454 ATTTTCCTCGGCTCCCTCGT 61.265 55.000 0.00 0.00 0.00 4.18
614 631 2.192664 TATTGGTTTGCTGCTTCCGA 57.807 45.000 0.00 1.16 0.00 4.55
820 849 1.386550 GTGGTGGGCTGGGGTTTAT 59.613 57.895 0.00 0.00 0.00 1.40
821 850 2.847650 GGTGGTGGGCTGGGGTTTA 61.848 63.158 0.00 0.00 0.00 2.01
904 933 1.296056 CGCGTGGGAACGGAATTCTT 61.296 55.000 5.23 0.00 37.48 2.52
1070 1104 2.239654 CCTCTGGTCTCTCTGACTCTCT 59.760 54.545 0.00 0.00 44.74 3.10
1076 1110 0.337773 ATGGCCTCTGGTCTCTCTGA 59.662 55.000 3.32 0.00 0.00 3.27
1102 1149 1.826024 CCCTGCCTGCTGGTAGTAG 59.174 63.158 22.82 12.33 43.40 2.57
1432 1497 1.271656 GGGTACACGTACTTGTGCTCT 59.728 52.381 17.68 0.00 43.74 4.09
1490 1563 2.280592 GAACCACCACGAACGGCT 60.281 61.111 0.00 0.00 0.00 5.52
1529 1641 2.295629 TGAATGAACAAAGCAATGCGGA 59.704 40.909 0.00 0.00 0.00 5.54
1705 1850 0.119155 AGATGTTCCTCCAGTCCCCA 59.881 55.000 0.00 0.00 0.00 4.96
1867 2024 1.743394 GGCGATTTAACAAGGGAGTGG 59.257 52.381 0.00 0.00 0.00 4.00
1891 2052 7.723324 TGTAACTAGGATAAGATTGTGGTAGC 58.277 38.462 0.00 0.00 0.00 3.58
1894 2055 8.319057 TCATGTAACTAGGATAAGATTGTGGT 57.681 34.615 0.00 0.00 0.00 4.16
2037 2227 7.668052 ACCCTCATAGTGAAATCTAGCTAGTAG 59.332 40.741 20.10 0.00 0.00 2.57
2038 2228 7.448777 CACCCTCATAGTGAAATCTAGCTAGTA 59.551 40.741 20.10 7.88 37.42 1.82
2039 2229 6.266558 CACCCTCATAGTGAAATCTAGCTAGT 59.733 42.308 20.10 5.41 37.42 2.57
2052 2242 3.703001 AGTTGTTCCACCCTCATAGTG 57.297 47.619 0.00 0.00 34.91 2.74
2095 2285 0.109272 TCTGCATCGACACGGACTTC 60.109 55.000 0.00 0.00 0.00 3.01
2097 2287 0.179127 CATCTGCATCGACACGGACT 60.179 55.000 0.34 0.00 0.00 3.85
2220 2422 1.599518 GTCCATCACCGGCAACACA 60.600 57.895 0.00 0.00 0.00 3.72
2301 2504 2.452295 TACACACGTGCCCGATAAAA 57.548 45.000 17.22 0.00 37.88 1.52
2302 2505 2.067766 GTTACACACGTGCCCGATAAA 58.932 47.619 17.22 0.00 37.88 1.40
2305 2508 0.669318 CAGTTACACACGTGCCCGAT 60.669 55.000 17.22 0.00 37.88 4.18
2306 2509 1.300311 CAGTTACACACGTGCCCGA 60.300 57.895 17.22 0.00 37.88 5.14
2468 2674 0.176680 GTCCACGCTCCACAGATCAT 59.823 55.000 0.00 0.00 0.00 2.45
2517 2723 5.947228 TGTAAGCATTTCTTGTGGAAGAG 57.053 39.130 0.00 0.00 39.44 2.85
2554 2760 7.172190 GTCTGATTTGTGGATCATCGATGTTAT 59.828 37.037 24.09 12.04 35.62 1.89
2616 2824 3.402628 AGTTGGAGTATTCGTTGCAGT 57.597 42.857 0.00 0.00 0.00 4.40
2617 2825 3.303495 CGTAGTTGGAGTATTCGTTGCAG 59.697 47.826 0.00 0.00 0.00 4.41
2618 2826 3.247442 CGTAGTTGGAGTATTCGTTGCA 58.753 45.455 0.00 0.00 0.00 4.08
2662 2872 7.497909 CAGGTCTACTACTCTTTTGTCCAAAAA 59.502 37.037 6.65 0.00 39.49 1.94
2664 2874 6.522054 CAGGTCTACTACTCTTTTGTCCAAA 58.478 40.000 0.00 0.00 0.00 3.28
2665 2875 5.510861 GCAGGTCTACTACTCTTTTGTCCAA 60.511 44.000 0.00 0.00 0.00 3.53
2668 2878 5.394224 AGCAGGTCTACTACTCTTTTGTC 57.606 43.478 0.00 0.00 0.00 3.18
2678 2888 8.458573 TTTTCATTTTTGAAGCAGGTCTACTA 57.541 30.769 0.00 0.00 0.00 1.82
2679 2889 6.959639 TTTCATTTTTGAAGCAGGTCTACT 57.040 33.333 0.00 0.00 0.00 2.57
2680 2890 7.203218 ACTTTTCATTTTTGAAGCAGGTCTAC 58.797 34.615 0.00 0.00 0.00 2.59
2681 2891 7.346751 ACTTTTCATTTTTGAAGCAGGTCTA 57.653 32.000 0.00 0.00 0.00 2.59
2686 2896 9.387123 GTCTACTACTTTTCATTTTTGAAGCAG 57.613 33.333 0.00 0.00 0.00 4.24
2692 2902 7.875971 AGCAGGTCTACTACTTTTCATTTTTG 58.124 34.615 0.00 0.00 0.00 2.44
2697 2907 6.360370 TGAAGCAGGTCTACTACTTTTCAT 57.640 37.500 0.00 0.00 32.89 2.57
2698 2908 5.801531 TGAAGCAGGTCTACTACTTTTCA 57.198 39.130 0.00 0.00 32.89 2.69
2699 2909 6.706716 AGTTTGAAGCAGGTCTACTACTTTTC 59.293 38.462 0.00 0.00 32.89 2.29
2700 2910 6.592870 AGTTTGAAGCAGGTCTACTACTTTT 58.407 36.000 0.00 0.00 32.89 2.27
2702 2912 5.304614 TGAGTTTGAAGCAGGTCTACTACTT 59.695 40.000 0.00 0.00 35.47 2.24
2703 2913 4.833380 TGAGTTTGAAGCAGGTCTACTACT 59.167 41.667 0.00 0.00 0.00 2.57
2704 2914 5.135508 TGAGTTTGAAGCAGGTCTACTAC 57.864 43.478 0.00 0.00 0.00 2.73
2706 2916 3.556004 GCTGAGTTTGAAGCAGGTCTACT 60.556 47.826 0.00 0.00 39.31 2.57
2707 2917 2.739379 GCTGAGTTTGAAGCAGGTCTAC 59.261 50.000 0.00 0.00 39.31 2.59
2709 2919 1.544314 GGCTGAGTTTGAAGCAGGTCT 60.544 52.381 0.00 0.00 41.36 3.85
2710 2920 0.877743 GGCTGAGTTTGAAGCAGGTC 59.122 55.000 0.00 0.00 41.36 3.85
2711 2921 0.538287 GGGCTGAGTTTGAAGCAGGT 60.538 55.000 0.00 0.00 41.36 4.00
2713 2923 0.538057 TGGGGCTGAGTTTGAAGCAG 60.538 55.000 0.00 0.00 41.36 4.24
2714 2924 0.538057 CTGGGGCTGAGTTTGAAGCA 60.538 55.000 0.00 0.00 41.36 3.91
2715 2925 0.538287 ACTGGGGCTGAGTTTGAAGC 60.538 55.000 0.00 0.00 38.76 3.86
2716 2926 1.202806 TCACTGGGGCTGAGTTTGAAG 60.203 52.381 0.00 0.00 0.00 3.02
2719 2929 0.954452 GTTCACTGGGGCTGAGTTTG 59.046 55.000 0.00 0.00 0.00 2.93
2721 2931 0.109342 CAGTTCACTGGGGCTGAGTT 59.891 55.000 0.00 0.00 40.20 3.01
2723 2933 4.709840 CAGTTCACTGGGGCTGAG 57.290 61.111 0.00 0.00 40.20 3.35
2778 3147 9.256477 GACCGAGTTCCAAAAGAAATTTTTATT 57.744 29.630 0.00 0.00 35.85 1.40
2779 3148 7.870954 GGACCGAGTTCCAAAAGAAATTTTTAT 59.129 33.333 0.00 0.00 35.85 1.40
2780 3149 7.204604 GGACCGAGTTCCAAAAGAAATTTTTA 58.795 34.615 0.00 0.00 35.85 1.52
2781 3150 6.046593 GGACCGAGTTCCAAAAGAAATTTTT 58.953 36.000 0.00 0.00 35.85 1.94
2782 3151 5.452776 GGGACCGAGTTCCAAAAGAAATTTT 60.453 40.000 0.00 0.00 37.40 1.82
2783 3152 4.038763 GGGACCGAGTTCCAAAAGAAATTT 59.961 41.667 0.00 0.00 37.40 1.82
2784 3153 3.572682 GGGACCGAGTTCCAAAAGAAATT 59.427 43.478 0.00 0.00 37.40 1.82
2785 3154 3.154710 GGGACCGAGTTCCAAAAGAAAT 58.845 45.455 0.00 0.00 37.40 2.17
2786 3155 2.092321 TGGGACCGAGTTCCAAAAGAAA 60.092 45.455 1.87 0.00 38.42 2.52
2787 3156 1.491332 TGGGACCGAGTTCCAAAAGAA 59.509 47.619 1.87 0.00 38.42 2.52
2788 3157 1.071699 CTGGGACCGAGTTCCAAAAGA 59.928 52.381 5.67 0.00 41.19 2.52
2789 3158 1.523758 CTGGGACCGAGTTCCAAAAG 58.476 55.000 5.67 0.00 41.19 2.27
2790 3159 0.536460 GCTGGGACCGAGTTCCAAAA 60.536 55.000 5.32 0.00 41.19 2.44
2791 3160 1.072505 GCTGGGACCGAGTTCCAAA 59.927 57.895 5.32 0.00 41.19 3.28
2792 3161 1.701031 TTGCTGGGACCGAGTTCCAA 61.701 55.000 5.32 0.00 41.19 3.53
2793 3162 1.701031 TTTGCTGGGACCGAGTTCCA 61.701 55.000 5.32 4.26 39.18 3.53
2794 3163 1.072505 TTTGCTGGGACCGAGTTCC 59.927 57.895 5.32 0.00 34.52 3.62
2795 3164 0.250338 AGTTTGCTGGGACCGAGTTC 60.250 55.000 5.32 0.00 0.00 3.01
2796 3165 0.535102 CAGTTTGCTGGGACCGAGTT 60.535 55.000 5.32 0.00 39.01 3.01
2797 3166 1.071471 CAGTTTGCTGGGACCGAGT 59.929 57.895 5.32 0.00 39.01 4.18
2798 3167 0.320374 TACAGTTTGCTGGGACCGAG 59.680 55.000 0.00 0.00 46.62 4.63
2799 3168 0.981183 ATACAGTTTGCTGGGACCGA 59.019 50.000 0.00 0.00 46.62 4.69
2800 3169 2.684001 TATACAGTTTGCTGGGACCG 57.316 50.000 0.00 0.00 46.62 4.79
2819 3188 8.195436 ACTACTGTTTCGTGTGTATATATGCTT 58.805 33.333 2.37 0.00 0.00 3.91
2820 3189 7.713750 ACTACTGTTTCGTGTGTATATATGCT 58.286 34.615 2.37 0.00 0.00 3.79
2821 3190 7.925703 ACTACTGTTTCGTGTGTATATATGC 57.074 36.000 0.00 0.00 0.00 3.14
2822 3191 9.940166 TGTACTACTGTTTCGTGTGTATATATG 57.060 33.333 0.00 0.00 0.00 1.78
2824 3193 9.382275 TCTGTACTACTGTTTCGTGTGTATATA 57.618 33.333 0.00 0.00 0.00 0.86
2825 3194 8.272545 TCTGTACTACTGTTTCGTGTGTATAT 57.727 34.615 0.00 0.00 0.00 0.86
2826 3195 7.671495 TCTGTACTACTGTTTCGTGTGTATA 57.329 36.000 0.00 0.00 0.00 1.47
2827 3196 6.564709 TCTGTACTACTGTTTCGTGTGTAT 57.435 37.500 0.00 0.00 0.00 2.29
2830 3199 5.279384 ACTTCTGTACTACTGTTTCGTGTG 58.721 41.667 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.