Multiple sequence alignment - TraesCS3B01G407100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G407100 chr3B 100.000 4604 0 0 1 4604 642482687 642478084 0.000000e+00 8503.0
1 TraesCS3B01G407100 chr3B 83.636 275 17 16 3878 4128 764294821 764294551 2.770000e-57 233.0
2 TraesCS3B01G407100 chr3B 96.040 101 3 1 789 888 811423167 811423267 3.690000e-36 163.0
3 TraesCS3B01G407100 chr3B 100.000 51 0 0 615 665 642482032 642481982 1.360000e-15 95.3
4 TraesCS3B01G407100 chr3B 100.000 51 0 0 656 706 642482073 642482023 1.360000e-15 95.3
5 TraesCS3B01G407100 chr3D 93.881 1863 76 10 1324 3155 481511436 481509581 0.000000e+00 2774.0
6 TraesCS3B01G407100 chr3D 92.442 688 44 6 3171 3857 481509595 481508915 0.000000e+00 976.0
7 TraesCS3B01G407100 chr3D 94.864 623 19 7 651 1269 481512404 481511791 0.000000e+00 961.0
8 TraesCS3B01G407100 chr3D 90.683 483 21 7 194 666 481512814 481512346 5.060000e-174 621.0
9 TraesCS3B01G407100 chr3D 95.283 212 10 0 1 212 481513040 481512829 2.050000e-88 337.0
10 TraesCS3B01G407100 chr3D 81.784 269 24 12 3882 4128 19321776 19321511 7.810000e-48 202.0
11 TraesCS3B01G407100 chr3D 84.163 221 17 9 3926 4128 356953446 356953666 1.010000e-46 198.0
12 TraesCS3B01G407100 chr3D 93.458 107 5 2 785 890 604374630 604374735 1.710000e-34 158.0
13 TraesCS3B01G407100 chr3D 79.182 269 19 15 3879 4128 613075101 613075351 7.980000e-33 152.0
14 TraesCS3B01G407100 chr3D 89.076 119 9 4 3882 3998 565611536 565611420 1.340000e-30 145.0
15 TraesCS3B01G407100 chr3D 95.833 72 3 0 4529 4600 481508039 481508110 2.910000e-22 117.0
16 TraesCS3B01G407100 chr3A 88.754 1983 111 30 759 2691 624448198 624446278 0.000000e+00 2324.0
17 TraesCS3B01G407100 chr3A 91.040 692 52 8 3171 3857 624445772 624445086 0.000000e+00 926.0
18 TraesCS3B01G407100 chr3A 84.969 479 40 15 2692 3155 624446219 624445758 1.510000e-124 457.0
19 TraesCS3B01G407100 chr3A 85.408 233 30 1 4184 4412 624445069 624444837 5.950000e-59 239.0
20 TraesCS3B01G407100 chr3A 93.578 109 6 1 785 892 734018546 734018654 1.330000e-35 161.0
21 TraesCS3B01G407100 chr3A 96.970 66 2 0 4535 4600 624444617 624444552 1.350000e-20 111.0
22 TraesCS3B01G407100 chr7B 84.330 351 36 11 2134 2472 651880482 651880139 4.440000e-85 326.0
23 TraesCS3B01G407100 chr7B 79.856 278 24 14 3879 4128 22833014 22833287 1.700000e-39 174.0
24 TraesCS3B01G407100 chr6D 85.659 258 20 11 3879 4128 48529897 48530145 5.910000e-64 255.0
25 TraesCS3B01G407100 chr4D 84.528 265 22 9 3879 4128 48070039 48070299 1.280000e-60 244.0
26 TraesCS3B01G407100 chr4D 83.594 256 27 9 3885 4132 230471531 230471283 4.630000e-55 226.0
27 TraesCS3B01G407100 chr2D 84.091 264 19 11 3882 4128 45551747 45552004 2.770000e-57 233.0
28 TraesCS3B01G407100 chr2D 80.866 277 21 14 3879 4128 497365283 497365554 6.080000e-44 189.0
29 TraesCS3B01G407100 chrUn 83.516 273 16 15 3882 4128 37816680 37816411 1.290000e-55 228.0
30 TraesCS3B01G407100 chrUn 94.286 105 4 2 789 893 42145253 42145151 4.770000e-35 159.0
31 TraesCS3B01G407100 chrUn 94.231 104 1 2 788 890 42164812 42164713 2.220000e-33 154.0
32 TraesCS3B01G407100 chrUn 94.118 102 3 3 789 890 42173889 42173791 7.980000e-33 152.0
33 TraesCS3B01G407100 chr6B 82.456 285 18 11 3874 4128 600594257 600593975 2.160000e-53 220.0
34 TraesCS3B01G407100 chr6B 88.525 122 8 6 3879 3998 653008167 653008284 4.800000e-30 143.0
35 TraesCS3B01G407100 chr2A 82.061 262 27 10 3882 4128 120725699 120725443 6.040000e-49 206.0
36 TraesCS3B01G407100 chr2A 90.977 133 11 1 3997 4128 733339367 733339499 1.320000e-40 178.0
37 TraesCS3B01G407100 chr7D 78.659 328 47 12 3882 4188 18228736 18229061 3.630000e-46 196.0
38 TraesCS3B01G407100 chr1B 96.875 96 1 2 789 884 496092214 496092307 4.770000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G407100 chr3B 642478084 642482687 4603 True 2897.866667 8503 100.0000 1 4604 3 chr3B.!!$R2 4603
1 TraesCS3B01G407100 chr3D 481508915 481513040 4125 True 1133.800000 2774 93.4306 1 3857 5 chr3D.!!$R3 3856
2 TraesCS3B01G407100 chr3A 624444552 624448198 3646 True 811.400000 2324 89.4282 759 4600 5 chr3A.!!$R1 3841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
621 664 0.179032 ATCGGTTGTGCAGTTGTCCA 60.179 50.0 0.00 0.0 0.00 4.02 F
622 665 0.179032 TCGGTTGTGCAGTTGTCCAT 60.179 50.0 0.00 0.0 0.00 3.41 F
1303 1349 0.179073 CTGACGCAGAATACCCCCTG 60.179 60.0 1.18 0.0 32.44 4.45 F
1304 1350 0.616395 TGACGCAGAATACCCCCTGA 60.616 55.0 0.00 0.0 32.37 3.86 F
2910 3399 0.251077 AAGCCTTGAAGGAGCAGTGG 60.251 55.0 16.93 0.0 37.67 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 2095 2.979813 GCAACCACATGAACGCTAAAAG 59.020 45.455 0.00 0.00 0.00 2.27 R
2118 2499 3.515502 CCCCTGACAGAGTAATGTTCAGA 59.484 47.826 3.32 0.00 33.70 3.27 R
2718 3178 1.008361 ACATTTGAAATGCGCGGTGC 61.008 50.000 17.19 6.58 46.70 5.01 R
2986 3476 1.985159 ACCCACCTGATAGCAAACAGA 59.015 47.619 0.00 0.00 36.38 3.41 R
4415 4924 0.037326 TGAACCCTTGCTAGCACTCG 60.037 55.000 19.17 9.72 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.103803 GTCCACTCCGCTGATGTCTA 58.896 55.000 0.00 0.00 0.00 2.59
54 55 1.351017 ACGCCATTCTTTCCTCCTTCA 59.649 47.619 0.00 0.00 0.00 3.02
69 70 2.225491 TCCTTCAGCGTGTGTATTTTGC 59.775 45.455 0.00 0.00 0.00 3.68
71 72 1.890876 TCAGCGTGTGTATTTTGCCT 58.109 45.000 0.00 0.00 0.00 4.75
87 88 0.875059 GCCTTTGTTCGAGGTTCCTG 59.125 55.000 0.00 0.00 36.63 3.86
104 105 5.820947 GGTTCCTGAAACGTATGGTGATATT 59.179 40.000 0.00 0.00 38.87 1.28
173 174 0.770499 TGATTCTGGGTGTTCAGGCA 59.230 50.000 0.00 0.00 35.58 4.75
183 184 0.251354 TGTTCAGGCAGCCATCTCTC 59.749 55.000 15.80 0.00 0.00 3.20
190 191 3.532155 AGCCATCTCTCGCCCGAC 61.532 66.667 0.00 0.00 0.00 4.79
198 199 3.458163 CTCGCCCGACCAGCCTTA 61.458 66.667 0.00 0.00 0.00 2.69
212 213 2.171448 CAGCCTTAATGTGGAGCCTACT 59.829 50.000 0.00 0.00 0.00 2.57
213 214 2.846827 AGCCTTAATGTGGAGCCTACTT 59.153 45.455 0.00 0.00 0.00 2.24
226 262 4.500716 GGAGCCTACTTCTCAATGTCTAGC 60.501 50.000 0.00 0.00 32.38 3.42
230 266 5.587289 CCTACTTCTCAATGTCTAGCTGAC 58.413 45.833 0.00 2.70 45.54 3.51
256 292 1.228094 GCTCTCTTGCATAGCCCCC 60.228 63.158 0.00 0.00 0.00 5.40
259 295 0.767375 TCTCTTGCATAGCCCCCATC 59.233 55.000 0.00 0.00 0.00 3.51
290 326 7.552050 TCTTCTCTTCATTCTTCTTCTCCTT 57.448 36.000 0.00 0.00 0.00 3.36
326 365 9.606631 CTTTTATTGCCTCTTCTCAGTATACTT 57.393 33.333 1.56 0.00 0.00 2.24
334 373 7.604545 GCCTCTTCTCAGTATACTTGTTTCTTT 59.395 37.037 1.56 0.00 0.00 2.52
352 391 3.832490 TCTTTCCCTCTTCAACTCATCGA 59.168 43.478 0.00 0.00 0.00 3.59
382 421 1.456705 ATCGCCTCCACCTCTCCTC 60.457 63.158 0.00 0.00 0.00 3.71
383 422 2.937959 ATCGCCTCCACCTCTCCTCC 62.938 65.000 0.00 0.00 0.00 4.30
384 423 2.366570 GCCTCCACCTCTCCTCCT 59.633 66.667 0.00 0.00 0.00 3.69
385 424 1.306568 GCCTCCACCTCTCCTCCTT 60.307 63.158 0.00 0.00 0.00 3.36
386 425 0.912006 GCCTCCACCTCTCCTCCTTT 60.912 60.000 0.00 0.00 0.00 3.11
387 426 1.662686 CCTCCACCTCTCCTCCTTTT 58.337 55.000 0.00 0.00 0.00 2.27
388 427 1.280421 CCTCCACCTCTCCTCCTTTTG 59.720 57.143 0.00 0.00 0.00 2.44
389 428 2.260822 CTCCACCTCTCCTCCTTTTGA 58.739 52.381 0.00 0.00 0.00 2.69
390 429 2.235898 CTCCACCTCTCCTCCTTTTGAG 59.764 54.545 0.00 0.00 41.07 3.02
391 430 1.339535 CCACCTCTCCTCCTTTTGAGC 60.340 57.143 0.00 0.00 39.98 4.26
392 431 1.627834 CACCTCTCCTCCTTTTGAGCT 59.372 52.381 0.00 0.00 39.98 4.09
393 432 2.039613 CACCTCTCCTCCTTTTGAGCTT 59.960 50.000 0.00 0.00 39.98 3.74
394 433 2.304470 ACCTCTCCTCCTTTTGAGCTTC 59.696 50.000 0.00 0.00 39.98 3.86
395 434 2.571202 CCTCTCCTCCTTTTGAGCTTCT 59.429 50.000 0.00 0.00 39.98 2.85
396 435 3.369366 CCTCTCCTCCTTTTGAGCTTCTC 60.369 52.174 0.00 0.00 39.98 2.87
413 452 6.073981 AGCTTCTCCTTTTTCATCTTCCTTT 58.926 36.000 0.00 0.00 0.00 3.11
421 460 5.743636 TTTTCATCTTCCTTTCATTGGGG 57.256 39.130 0.00 0.00 0.00 4.96
450 489 1.290203 CTACAATGGCGGTGCTACAG 58.710 55.000 0.00 0.00 0.00 2.74
534 573 5.337571 CCAATAGCTATTTCTATCAGCCGGA 60.338 44.000 16.46 0.00 35.88 5.14
568 611 1.985159 TGGGACAAGTTCTGCCACTAT 59.015 47.619 0.00 0.00 31.92 2.12
606 649 5.713792 AATGATACTCCTAGACACATCGG 57.286 43.478 0.00 0.00 0.00 4.18
607 650 4.166246 TGATACTCCTAGACACATCGGT 57.834 45.455 0.00 0.00 0.00 4.69
618 661 3.094386 ACATCGGTTGTGCAGTTGT 57.906 47.368 0.00 0.00 37.11 3.32
619 662 0.944386 ACATCGGTTGTGCAGTTGTC 59.056 50.000 0.00 0.00 37.11 3.18
620 663 0.238289 CATCGGTTGTGCAGTTGTCC 59.762 55.000 0.00 0.00 0.00 4.02
621 664 0.179032 ATCGGTTGTGCAGTTGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
622 665 0.179032 TCGGTTGTGCAGTTGTCCAT 60.179 50.000 0.00 0.00 0.00 3.41
623 666 0.238289 CGGTTGTGCAGTTGTCCATC 59.762 55.000 0.00 0.00 0.00 3.51
624 667 1.609208 GGTTGTGCAGTTGTCCATCT 58.391 50.000 0.00 0.00 0.00 2.90
625 668 1.537202 GGTTGTGCAGTTGTCCATCTC 59.463 52.381 0.00 0.00 0.00 2.75
626 669 2.498167 GTTGTGCAGTTGTCCATCTCT 58.502 47.619 0.00 0.00 0.00 3.10
627 670 2.174363 TGTGCAGTTGTCCATCTCTG 57.826 50.000 0.00 0.00 0.00 3.35
628 671 1.693606 TGTGCAGTTGTCCATCTCTGA 59.306 47.619 0.00 0.00 0.00 3.27
629 672 2.104622 TGTGCAGTTGTCCATCTCTGAA 59.895 45.455 0.00 0.00 0.00 3.02
630 673 3.141398 GTGCAGTTGTCCATCTCTGAAA 58.859 45.455 0.00 0.00 0.00 2.69
631 674 3.565482 GTGCAGTTGTCCATCTCTGAAAA 59.435 43.478 0.00 0.00 0.00 2.29
632 675 4.217118 GTGCAGTTGTCCATCTCTGAAAAT 59.783 41.667 0.00 0.00 0.00 1.82
633 676 4.216902 TGCAGTTGTCCATCTCTGAAAATG 59.783 41.667 0.00 0.00 0.00 2.32
634 677 4.380233 GCAGTTGTCCATCTCTGAAAATGG 60.380 45.833 10.91 10.91 43.22 3.16
642 685 7.779754 TCCATCTCTGAAAATGGAATTGAAA 57.220 32.000 15.45 0.00 46.51 2.69
643 686 8.370266 TCCATCTCTGAAAATGGAATTGAAAT 57.630 30.769 15.45 0.00 46.51 2.17
644 687 9.478238 TCCATCTCTGAAAATGGAATTGAAATA 57.522 29.630 15.45 0.00 46.51 1.40
706 750 2.403252 AAGATGTCGGTTGTCCATCC 57.597 50.000 0.00 0.00 36.48 3.51
726 770 9.618890 TCCATCCTTTTAGTTTCTTCATAGATG 57.381 33.333 0.00 0.00 0.00 2.90
736 780 7.259161 AGTTTCTTCATAGATGTTAGACGACC 58.741 38.462 0.00 0.00 0.00 4.79
754 798 4.403432 ACGACCATCCTAATTCCTCGTTAA 59.597 41.667 0.00 0.00 28.90 2.01
779 823 7.989826 AGTTTAATAAATTAGCCAGCTCAGTG 58.010 34.615 0.00 0.00 0.00 3.66
873 917 5.628797 TCAAATCCCACAGCTGTCATATA 57.371 39.130 18.64 1.09 0.00 0.86
874 918 6.191657 TCAAATCCCACAGCTGTCATATAT 57.808 37.500 18.64 3.65 0.00 0.86
875 919 6.604171 TCAAATCCCACAGCTGTCATATATT 58.396 36.000 18.64 9.68 0.00 1.28
876 920 6.712095 TCAAATCCCACAGCTGTCATATATTC 59.288 38.462 18.64 0.00 0.00 1.75
877 921 6.445451 AATCCCACAGCTGTCATATATTCT 57.555 37.500 18.64 0.00 0.00 2.40
878 922 5.894298 TCCCACAGCTGTCATATATTCTT 57.106 39.130 18.64 0.00 0.00 2.52
879 923 6.252599 TCCCACAGCTGTCATATATTCTTT 57.747 37.500 18.64 0.00 0.00 2.52
880 924 6.662755 TCCCACAGCTGTCATATATTCTTTT 58.337 36.000 18.64 0.00 0.00 2.27
881 925 7.118723 TCCCACAGCTGTCATATATTCTTTTT 58.881 34.615 18.64 0.00 0.00 1.94
882 926 8.271458 TCCCACAGCTGTCATATATTCTTTTTA 58.729 33.333 18.64 0.00 0.00 1.52
911 955 5.612725 TCCCTGTTTTCAGCTCAATTTTT 57.387 34.783 0.00 0.00 45.76 1.94
935 980 3.786516 TGTGTGTTCGTTCTGTACTCA 57.213 42.857 0.00 0.00 0.00 3.41
1287 1333 2.693762 CCTCGCCGACGGTAACTGA 61.694 63.158 16.73 5.37 40.63 3.41
1291 1337 2.256158 CCGACGGTAACTGACGCA 59.744 61.111 5.48 0.00 0.00 5.24
1292 1338 1.800315 CCGACGGTAACTGACGCAG 60.800 63.158 5.48 5.47 37.52 5.18
1303 1349 0.179073 CTGACGCAGAATACCCCCTG 60.179 60.000 1.18 0.00 32.44 4.45
1304 1350 0.616395 TGACGCAGAATACCCCCTGA 60.616 55.000 0.00 0.00 32.37 3.86
1306 1352 1.141053 GACGCAGAATACCCCCTGAAT 59.859 52.381 0.00 0.00 32.37 2.57
1315 1361 1.111277 ACCCCCTGAATTAAATGCGC 58.889 50.000 0.00 0.00 0.00 6.09
1316 1362 1.110442 CCCCCTGAATTAAATGCGCA 58.890 50.000 14.96 14.96 0.00 6.09
1322 1368 5.396484 CCCTGAATTAAATGCGCATATCTG 58.604 41.667 25.61 18.10 0.00 2.90
1378 1724 6.540914 GGTATCCATTGAACGTTGGAGAATTA 59.459 38.462 5.00 0.00 44.87 1.40
1388 1734 4.699735 ACGTTGGAGAATTATCAATGTGCA 59.300 37.500 1.97 0.00 38.65 4.57
1404 1750 3.078097 TGTGCACGGCATTTTACATAGT 58.922 40.909 13.13 0.00 41.91 2.12
1463 1809 9.567776 TTGTTTAGAGACCTGAATTTTGTGATA 57.432 29.630 0.00 0.00 0.00 2.15
1561 1919 4.113815 CTGAGCCCGCCCCATGAA 62.114 66.667 0.00 0.00 0.00 2.57
1717 2075 1.569708 GAGAATCTGCTGCTCTTCCG 58.430 55.000 0.00 0.00 0.00 4.30
1737 2095 3.493503 CCGAAACAGGTTCAGTGAGTTAC 59.506 47.826 0.00 0.00 35.83 2.50
1745 2103 4.989168 AGGTTCAGTGAGTTACTTTTAGCG 59.011 41.667 0.00 0.00 37.60 4.26
1747 2105 5.235831 GGTTCAGTGAGTTACTTTTAGCGTT 59.764 40.000 0.00 0.00 37.60 4.84
1750 2108 6.220930 TCAGTGAGTTACTTTTAGCGTTCAT 58.779 36.000 0.00 0.00 37.60 2.57
1754 2112 5.178623 TGAGTTACTTTTAGCGTTCATGTGG 59.821 40.000 0.00 0.00 0.00 4.17
1758 2116 2.697431 TTTAGCGTTCATGTGGTTGC 57.303 45.000 0.00 0.00 0.00 4.17
1778 2136 8.946085 TGGTTGCTTCTAACATATTAGTTCTTG 58.054 33.333 0.00 0.00 39.18 3.02
1892 2254 9.529325 TTTACATAGTATGCAGTGTTGATCTAC 57.471 33.333 10.16 0.00 0.00 2.59
1994 2374 8.972127 GTGTAAGAGATCCTAATATAGCATCCA 58.028 37.037 0.00 0.00 0.00 3.41
2019 2399 7.074653 AGTACAACCTCTGGAGAATTTGTTA 57.925 36.000 13.32 3.46 32.17 2.41
2118 2499 6.686630 TGATTATTTTGATTGGTCACGCTTT 58.313 32.000 0.00 0.00 33.11 3.51
2131 2517 4.143094 GGTCACGCTTTCTGAACATTACTC 60.143 45.833 0.00 0.00 0.00 2.59
2132 2518 4.686554 GTCACGCTTTCTGAACATTACTCT 59.313 41.667 0.00 0.00 0.00 3.24
2137 2523 5.164012 CGCTTTCTGAACATTACTCTGTCAG 60.164 44.000 0.00 0.00 0.00 3.51
2298 2685 2.501316 TCTTCCTTCATCGCTTCCATCA 59.499 45.455 0.00 0.00 0.00 3.07
2361 2748 7.457380 TTCTCTCCTTCCTAATCCATTTGAT 57.543 36.000 0.00 0.00 34.22 2.57
2520 2918 3.838317 AGTGTGGTGTATGAGTACATGGT 59.162 43.478 0.00 0.00 42.43 3.55
2679 3081 2.823959 AGGGTGTGCATGGAATCAAAT 58.176 42.857 0.00 0.00 0.00 2.32
2718 3178 8.682128 TCAAAGCAATAAAATAGCCTTAAACG 57.318 30.769 0.00 0.00 0.00 3.60
2724 3184 0.730840 AATAGCCTTAAACGCACCGC 59.269 50.000 0.00 0.00 0.00 5.68
2761 3221 3.157087 ACTGGCTTGGTTACTTTGATGG 58.843 45.455 0.00 0.00 0.00 3.51
2785 3245 6.541278 GGTCAGGGCGAGTAATTTTTAGTATT 59.459 38.462 0.00 0.00 0.00 1.89
2788 3248 7.825270 TCAGGGCGAGTAATTTTTAGTATTCAA 59.175 33.333 0.00 0.00 0.00 2.69
2810 3299 2.172505 ACATCAGATATTTGTCCGGGCA 59.827 45.455 3.51 3.51 0.00 5.36
2833 3322 6.508777 CAAGTAGGAAGCATAGTCCTCTTAC 58.491 44.000 0.00 0.00 42.02 2.34
2853 3342 4.010667 ACTGTAAAATGGTTGACGCCTA 57.989 40.909 0.00 0.00 0.00 3.93
2908 3397 0.767375 TGAAGCCTTGAAGGAGCAGT 59.233 50.000 16.93 0.00 37.67 4.40
2910 3399 0.251077 AAGCCTTGAAGGAGCAGTGG 60.251 55.000 16.93 0.00 37.67 4.00
2912 3401 0.324943 GCCTTGAAGGAGCAGTGGTA 59.675 55.000 16.93 0.00 37.67 3.25
3155 3645 7.506328 AATTCTTACAGGTAACAACCAGTTC 57.494 36.000 0.00 0.00 41.64 3.01
3156 3646 4.964593 TCTTACAGGTAACAACCAGTTCC 58.035 43.478 0.00 0.00 41.64 3.62
3158 3648 3.945640 ACAGGTAACAACCAGTTCCTT 57.054 42.857 0.00 0.00 41.64 3.36
3160 3650 4.204799 ACAGGTAACAACCAGTTCCTTTC 58.795 43.478 0.00 0.00 41.64 2.62
3161 3651 3.568430 CAGGTAACAACCAGTTCCTTTCC 59.432 47.826 0.00 0.00 41.64 3.13
3162 3652 3.203487 AGGTAACAACCAGTTCCTTTCCA 59.797 43.478 0.00 0.00 41.64 3.53
3164 3654 4.403113 GGTAACAACCAGTTCCTTTCCAAA 59.597 41.667 0.00 0.00 41.64 3.28
3165 3655 5.105269 GGTAACAACCAGTTCCTTTCCAAAA 60.105 40.000 0.00 0.00 41.64 2.44
3166 3656 5.491323 AACAACCAGTTCCTTTCCAAAAA 57.509 34.783 0.00 0.00 34.74 1.94
3221 3711 3.914426 ACAACACTTCCTCTTGTCTGT 57.086 42.857 0.00 0.00 0.00 3.41
3238 3728 5.000591 TGTCTGTTTCTTTGTCTGTGTTGA 58.999 37.500 0.00 0.00 0.00 3.18
3271 3761 4.021807 TCAATTGGTGAACTAGCTGTCGTA 60.022 41.667 5.42 0.00 31.51 3.43
3302 3794 7.114866 TGCATCATCCAAACATATTCAACAT 57.885 32.000 0.00 0.00 0.00 2.71
3386 3878 2.032151 GCTGGAAAACCCACCAAAGGA 61.032 52.381 0.00 0.00 40.82 3.36
3435 3927 1.764723 CTCAGTGATAGATGGCACCCA 59.235 52.381 0.00 0.00 38.19 4.51
3549 4041 3.745723 GGTTCATGTGGACAACCCT 57.254 52.632 2.52 0.00 34.55 4.34
3589 4081 1.227002 GCGCCTAACTTCCTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
3604 4096 3.441572 CCTCTCCGCTGTTCAAAATTGAT 59.558 43.478 0.00 0.00 37.00 2.57
3610 4102 5.471797 TCCGCTGTTCAAAATTGATCTGTTA 59.528 36.000 0.00 0.00 37.00 2.41
3632 4124 3.402628 TTTACTGTCAACTCCAGCCTC 57.597 47.619 0.00 0.00 33.09 4.70
3694 4186 8.663911 GGATACTTATTCATGCTCTCTTATTGC 58.336 37.037 0.00 0.00 0.00 3.56
3695 4187 9.212641 GATACTTATTCATGCTCTCTTATTGCA 57.787 33.333 0.00 0.00 41.13 4.08
3706 4198 5.298777 GCTCTCTTATTGCAATTGGATGAGT 59.701 40.000 18.75 0.00 0.00 3.41
3774 4269 3.873952 GACGCTCTCTTCTTGCCAATATT 59.126 43.478 0.00 0.00 0.00 1.28
3783 4278 6.662755 TCTTCTTGCCAATATTAGTGGATGT 58.337 36.000 14.15 0.00 38.54 3.06
3784 4279 7.801104 TCTTCTTGCCAATATTAGTGGATGTA 58.199 34.615 14.15 0.00 38.54 2.29
3802 4298 7.118390 GTGGATGTATCATGGAAGTAATGTAGC 59.882 40.741 0.00 0.00 0.00 3.58
3814 4310 3.637229 AGTAATGTAGCGTGCTCTGGTAT 59.363 43.478 0.00 0.00 0.00 2.73
3816 4312 2.293677 TGTAGCGTGCTCTGGTATTG 57.706 50.000 0.00 0.00 0.00 1.90
3820 4316 1.009829 GCGTGCTCTGGTATTGAAGG 58.990 55.000 0.00 0.00 0.00 3.46
3852 4348 0.108186 TGGTGTAGCCGATGAGCTTG 60.108 55.000 0.00 0.00 41.41 4.01
3866 4371 0.731417 AGCTTGCTGATGATCAACGC 59.269 50.000 0.00 6.19 0.00 4.84
3878 4383 3.515630 TGATCAACGCTCTCTTGTGATC 58.484 45.455 0.00 5.25 33.43 2.92
3879 4384 1.982612 TCAACGCTCTCTTGTGATCG 58.017 50.000 0.00 0.00 0.00 3.69
3880 4385 0.994995 CAACGCTCTCTTGTGATCGG 59.005 55.000 0.00 0.00 0.00 4.18
3881 4386 0.888619 AACGCTCTCTTGTGATCGGA 59.111 50.000 0.00 0.00 0.00 4.55
3882 4387 0.888619 ACGCTCTCTTGTGATCGGAA 59.111 50.000 0.00 0.00 0.00 4.30
3883 4388 1.135257 ACGCTCTCTTGTGATCGGAAG 60.135 52.381 0.00 0.00 0.00 3.46
3884 4389 1.135257 CGCTCTCTTGTGATCGGAAGT 60.135 52.381 4.05 0.00 0.00 3.01
3885 4390 2.266554 GCTCTCTTGTGATCGGAAGTG 58.733 52.381 4.05 2.54 0.00 3.16
3886 4391 2.266554 CTCTCTTGTGATCGGAAGTGC 58.733 52.381 4.05 0.00 0.00 4.40
3887 4392 1.066858 TCTCTTGTGATCGGAAGTGCC 60.067 52.381 4.05 0.00 0.00 5.01
3888 4393 0.976641 TCTTGTGATCGGAAGTGCCT 59.023 50.000 4.05 0.00 0.00 4.75
3889 4394 1.347707 TCTTGTGATCGGAAGTGCCTT 59.652 47.619 4.05 0.00 0.00 4.35
3890 4395 2.154462 CTTGTGATCGGAAGTGCCTTT 58.846 47.619 0.00 0.00 0.00 3.11
3891 4396 1.808411 TGTGATCGGAAGTGCCTTTC 58.192 50.000 0.00 0.00 0.00 2.62
3892 4397 1.347707 TGTGATCGGAAGTGCCTTTCT 59.652 47.619 0.00 0.00 0.00 2.52
3893 4398 1.734465 GTGATCGGAAGTGCCTTTCTG 59.266 52.381 0.83 0.83 35.26 3.02
3894 4399 0.729690 GATCGGAAGTGCCTTTCTGC 59.270 55.000 2.15 0.00 34.20 4.26
3895 4400 0.326264 ATCGGAAGTGCCTTTCTGCT 59.674 50.000 2.15 0.00 34.20 4.24
3896 4401 0.320771 TCGGAAGTGCCTTTCTGCTC 60.321 55.000 2.15 0.00 34.20 4.26
3897 4402 1.301677 CGGAAGTGCCTTTCTGCTCC 61.302 60.000 0.00 0.00 0.00 4.70
3898 4403 0.962855 GGAAGTGCCTTTCTGCTCCC 60.963 60.000 0.00 0.00 0.00 4.30
3899 4404 0.250901 GAAGTGCCTTTCTGCTCCCA 60.251 55.000 0.00 0.00 0.00 4.37
3900 4405 0.185901 AAGTGCCTTTCTGCTCCCAA 59.814 50.000 0.00 0.00 0.00 4.12
3901 4406 0.251077 AGTGCCTTTCTGCTCCCAAG 60.251 55.000 0.00 0.00 0.00 3.61
3922 4427 2.416747 CTCAAATGAGCTCGGTGAACA 58.583 47.619 9.64 0.00 35.13 3.18
3923 4428 2.414481 CTCAAATGAGCTCGGTGAACAG 59.586 50.000 9.64 0.00 35.13 3.16
3924 4429 2.146342 CAAATGAGCTCGGTGAACAGT 58.854 47.619 9.64 0.00 0.00 3.55
3925 4430 3.006430 TCAAATGAGCTCGGTGAACAGTA 59.994 43.478 9.64 0.00 0.00 2.74
3926 4431 3.678056 AATGAGCTCGGTGAACAGTAA 57.322 42.857 9.64 0.00 0.00 2.24
3927 4432 3.678056 ATGAGCTCGGTGAACAGTAAA 57.322 42.857 9.64 0.00 0.00 2.01
3928 4433 3.462483 TGAGCTCGGTGAACAGTAAAA 57.538 42.857 9.64 0.00 0.00 1.52
3929 4434 4.002906 TGAGCTCGGTGAACAGTAAAAT 57.997 40.909 9.64 0.00 0.00 1.82
3930 4435 3.994392 TGAGCTCGGTGAACAGTAAAATC 59.006 43.478 9.64 0.00 0.00 2.17
3931 4436 3.994392 GAGCTCGGTGAACAGTAAAATCA 59.006 43.478 0.00 0.00 0.00 2.57
3932 4437 4.385825 AGCTCGGTGAACAGTAAAATCAA 58.614 39.130 0.00 0.00 0.00 2.57
3933 4438 4.819630 AGCTCGGTGAACAGTAAAATCAAA 59.180 37.500 0.00 0.00 0.00 2.69
3934 4439 4.909880 GCTCGGTGAACAGTAAAATCAAAC 59.090 41.667 0.00 0.00 0.00 2.93
3935 4440 5.504994 GCTCGGTGAACAGTAAAATCAAACA 60.505 40.000 0.00 0.00 0.00 2.83
3936 4441 6.438259 TCGGTGAACAGTAAAATCAAACAA 57.562 33.333 0.00 0.00 0.00 2.83
3937 4442 6.853720 TCGGTGAACAGTAAAATCAAACAAA 58.146 32.000 0.00 0.00 0.00 2.83
3938 4443 7.313646 TCGGTGAACAGTAAAATCAAACAAAA 58.686 30.769 0.00 0.00 0.00 2.44
3939 4444 7.976734 TCGGTGAACAGTAAAATCAAACAAAAT 59.023 29.630 0.00 0.00 0.00 1.82
3940 4445 8.599774 CGGTGAACAGTAAAATCAAACAAAATT 58.400 29.630 0.00 0.00 0.00 1.82
3980 4485 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
3981 4486 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
3982 4487 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
3983 4488 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
3984 4489 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
3985 4490 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
3986 4491 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
3987 4492 8.360390 GGGAGAAACATTGACAAAAGTTCTAAT 58.640 33.333 9.09 0.00 0.00 1.73
3988 4493 9.185192 GGAGAAACATTGACAAAAGTTCTAATG 57.815 33.333 9.09 0.00 0.00 1.90
3989 4494 9.950680 GAGAAACATTGACAAAAGTTCTAATGA 57.049 29.630 9.09 0.00 31.79 2.57
3994 4499 8.981647 ACATTGACAAAAGTTCTAATGAATTGC 58.018 29.630 0.00 0.00 34.40 3.56
3995 4500 8.980610 CATTGACAAAAGTTCTAATGAATTGCA 58.019 29.630 0.00 0.00 34.40 4.08
3996 4501 8.939201 TTGACAAAAGTTCTAATGAATTGCAA 57.061 26.923 0.00 0.00 34.40 4.08
3997 4502 8.939201 TGACAAAAGTTCTAATGAATTGCAAA 57.061 26.923 1.71 0.00 34.40 3.68
3998 4503 9.545105 TGACAAAAGTTCTAATGAATTGCAAAT 57.455 25.926 1.71 0.00 34.40 2.32
3999 4504 9.801714 GACAAAAGTTCTAATGAATTGCAAATG 57.198 29.630 1.71 0.00 34.40 2.32
4000 4505 9.545105 ACAAAAGTTCTAATGAATTGCAAATGA 57.455 25.926 1.71 0.00 34.40 2.57
4001 4506 9.801714 CAAAAGTTCTAATGAATTGCAAATGAC 57.198 29.630 1.71 0.00 34.40 3.06
4002 4507 9.545105 AAAAGTTCTAATGAATTGCAAATGACA 57.455 25.926 1.71 1.88 34.40 3.58
4003 4508 9.545105 AAAGTTCTAATGAATTGCAAATGACAA 57.455 25.926 1.71 0.00 34.40 3.18
4004 4509 9.715121 AAGTTCTAATGAATTGCAAATGACAAT 57.285 25.926 1.71 0.00 39.38 2.71
4005 4510 9.362539 AGTTCTAATGAATTGCAAATGACAATC 57.637 29.630 1.71 0.00 36.74 2.67
4006 4511 8.598075 GTTCTAATGAATTGCAAATGACAATCC 58.402 33.333 1.71 0.00 36.74 3.01
4007 4512 8.070034 TCTAATGAATTGCAAATGACAATCCT 57.930 30.769 1.71 0.00 36.74 3.24
4008 4513 6.978343 AATGAATTGCAAATGACAATCCTG 57.022 33.333 1.71 0.00 36.74 3.86
4009 4514 5.471556 TGAATTGCAAATGACAATCCTGT 57.528 34.783 1.71 0.00 36.74 4.00
4010 4515 6.587206 TGAATTGCAAATGACAATCCTGTA 57.413 33.333 1.71 0.00 36.74 2.74
4011 4516 6.990798 TGAATTGCAAATGACAATCCTGTAA 58.009 32.000 1.71 0.00 36.74 2.41
4012 4517 7.092079 TGAATTGCAAATGACAATCCTGTAAG 58.908 34.615 1.71 0.00 36.74 2.34
4050 4555 7.628769 AAAAACAAATTCAGTGCTCCAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
4051 4556 6.607735 AAACAAATTCAGTGCTCCAAAATG 57.392 33.333 0.00 0.00 0.00 2.32
4052 4557 4.060205 ACAAATTCAGTGCTCCAAAATGC 58.940 39.130 0.00 0.00 0.00 3.56
4053 4558 4.202284 ACAAATTCAGTGCTCCAAAATGCT 60.202 37.500 0.00 0.00 0.00 3.79
4054 4559 4.612264 AATTCAGTGCTCCAAAATGCTT 57.388 36.364 0.00 0.00 0.00 3.91
4055 4560 4.612264 ATTCAGTGCTCCAAAATGCTTT 57.388 36.364 0.00 0.00 0.00 3.51
4056 4561 4.405116 TTCAGTGCTCCAAAATGCTTTT 57.595 36.364 0.00 0.00 0.00 2.27
4075 4580 8.801715 TGCTTTTGAAAGTAGCATTTTTAGAG 57.198 30.769 0.45 0.00 39.79 2.43
4076 4581 8.413229 TGCTTTTGAAAGTAGCATTTTTAGAGT 58.587 29.630 0.45 0.00 39.79 3.24
4077 4582 9.893305 GCTTTTGAAAGTAGCATTTTTAGAGTA 57.107 29.630 5.47 0.00 38.28 2.59
4080 4585 7.591006 TGAAAGTAGCATTTTTAGAGTACCG 57.409 36.000 0.00 0.00 0.00 4.02
4081 4586 7.380536 TGAAAGTAGCATTTTTAGAGTACCGA 58.619 34.615 0.00 0.00 0.00 4.69
4082 4587 8.038944 TGAAAGTAGCATTTTTAGAGTACCGAT 58.961 33.333 0.00 0.00 0.00 4.18
4083 4588 8.788325 AAAGTAGCATTTTTAGAGTACCGATT 57.212 30.769 0.00 0.00 0.00 3.34
4084 4589 8.788325 AAGTAGCATTTTTAGAGTACCGATTT 57.212 30.769 0.00 0.00 0.00 2.17
4085 4590 8.788325 AGTAGCATTTTTAGAGTACCGATTTT 57.212 30.769 0.00 0.00 0.00 1.82
4086 4591 9.227777 AGTAGCATTTTTAGAGTACCGATTTTT 57.772 29.630 0.00 0.00 0.00 1.94
4104 4609 2.264005 TTTTGCAACGCCTTCTAGGA 57.736 45.000 0.00 0.00 37.67 2.94
4105 4610 2.264005 TTTGCAACGCCTTCTAGGAA 57.736 45.000 0.00 0.00 37.67 3.36
4106 4611 2.489938 TTGCAACGCCTTCTAGGAAT 57.510 45.000 0.00 0.00 37.67 3.01
4107 4612 1.737838 TGCAACGCCTTCTAGGAATG 58.262 50.000 0.00 0.00 37.67 2.67
4108 4613 1.003118 TGCAACGCCTTCTAGGAATGT 59.997 47.619 0.00 0.00 37.67 2.71
4109 4614 1.398390 GCAACGCCTTCTAGGAATGTG 59.602 52.381 0.00 0.00 37.67 3.21
4110 4615 2.935238 GCAACGCCTTCTAGGAATGTGA 60.935 50.000 0.00 0.00 37.67 3.58
4111 4616 3.535561 CAACGCCTTCTAGGAATGTGAT 58.464 45.455 0.00 0.00 37.67 3.06
4112 4617 3.914426 ACGCCTTCTAGGAATGTGATT 57.086 42.857 0.00 0.00 37.67 2.57
4113 4618 4.222124 ACGCCTTCTAGGAATGTGATTT 57.778 40.909 0.00 0.00 37.67 2.17
4114 4619 4.192317 ACGCCTTCTAGGAATGTGATTTC 58.808 43.478 0.00 0.00 37.67 2.17
4115 4620 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
4116 4621 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
4117 4622 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
4118 4623 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
4119 4624 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
4120 4625 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
4121 4626 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
4122 4627 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
4123 4628 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
4124 4629 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
4125 4630 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
4126 4631 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
4127 4632 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
4154 4659 8.835439 TGAATTTCTTTTTATTTTGTCCCAAGC 58.165 29.630 0.00 0.00 0.00 4.01
4155 4660 8.978874 AATTTCTTTTTATTTTGTCCCAAGCT 57.021 26.923 0.00 0.00 0.00 3.74
4162 4667 9.838339 TTTTTATTTTGTCCCAAGCTAATTTGA 57.162 25.926 0.00 0.00 0.00 2.69
4163 4668 9.487790 TTTTATTTTGTCCCAAGCTAATTTGAG 57.512 29.630 0.00 0.00 0.00 3.02
4164 4669 5.467035 TTTTGTCCCAAGCTAATTTGAGG 57.533 39.130 0.00 0.00 0.00 3.86
4165 4670 3.806949 TGTCCCAAGCTAATTTGAGGT 57.193 42.857 0.00 0.00 0.00 3.85
4166 4671 4.112634 TGTCCCAAGCTAATTTGAGGTT 57.887 40.909 0.00 0.00 37.65 3.50
4171 4676 4.178545 CAAGCTAATTTGAGGTTGGGTG 57.821 45.455 10.90 0.00 46.45 4.61
4172 4677 2.171003 AGCTAATTTGAGGTTGGGTGC 58.829 47.619 0.00 0.00 0.00 5.01
4173 4678 1.892474 GCTAATTTGAGGTTGGGTGCA 59.108 47.619 0.00 0.00 0.00 4.57
4174 4679 2.094545 GCTAATTTGAGGTTGGGTGCAG 60.095 50.000 0.00 0.00 0.00 4.41
4175 4680 2.380064 AATTTGAGGTTGGGTGCAGA 57.620 45.000 0.00 0.00 0.00 4.26
4176 4681 2.380064 ATTTGAGGTTGGGTGCAGAA 57.620 45.000 0.00 0.00 0.00 3.02
4177 4682 2.151502 TTTGAGGTTGGGTGCAGAAA 57.848 45.000 0.00 0.00 0.00 2.52
4178 4683 1.398692 TTGAGGTTGGGTGCAGAAAC 58.601 50.000 0.00 0.00 0.00 2.78
4179 4684 0.550914 TGAGGTTGGGTGCAGAAACT 59.449 50.000 0.00 0.00 0.00 2.66
4180 4685 1.239347 GAGGTTGGGTGCAGAAACTC 58.761 55.000 3.09 3.09 0.00 3.01
4181 4686 0.178990 AGGTTGGGTGCAGAAACTCC 60.179 55.000 0.00 0.00 0.00 3.85
4182 4687 1.515521 GGTTGGGTGCAGAAACTCCG 61.516 60.000 0.00 0.00 0.00 4.63
4183 4688 1.896660 TTGGGTGCAGAAACTCCGC 60.897 57.895 0.00 0.00 0.00 5.54
4184 4689 3.423154 GGGTGCAGAAACTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
4185 4690 2.665185 GGTGCAGAAACTCCGCGT 60.665 61.111 4.92 0.00 0.00 6.01
4186 4691 2.668280 GGTGCAGAAACTCCGCGTC 61.668 63.158 4.92 0.00 0.00 5.19
4187 4692 2.357034 TGCAGAAACTCCGCGTCC 60.357 61.111 4.92 0.00 0.00 4.79
4188 4693 2.048127 GCAGAAACTCCGCGTCCT 60.048 61.111 4.92 0.00 0.00 3.85
4189 4694 2.095252 GCAGAAACTCCGCGTCCTC 61.095 63.158 4.92 0.00 0.00 3.71
4190 4695 1.587054 CAGAAACTCCGCGTCCTCT 59.413 57.895 4.92 0.00 0.00 3.69
4191 4696 0.038159 CAGAAACTCCGCGTCCTCTT 60.038 55.000 4.92 0.00 0.00 2.85
4192 4697 0.038159 AGAAACTCCGCGTCCTCTTG 60.038 55.000 4.92 0.00 0.00 3.02
4193 4698 0.319641 GAAACTCCGCGTCCTCTTGT 60.320 55.000 4.92 0.00 0.00 3.16
4194 4699 0.600255 AAACTCCGCGTCCTCTTGTG 60.600 55.000 4.92 0.00 0.00 3.33
4195 4700 1.461091 AACTCCGCGTCCTCTTGTGA 61.461 55.000 4.92 0.00 0.00 3.58
4196 4701 1.251527 ACTCCGCGTCCTCTTGTGAT 61.252 55.000 4.92 0.00 0.00 3.06
4216 4721 7.099120 TGTGATACCATATGCTAGCATTGTAG 58.901 38.462 33.74 21.49 37.82 2.74
4223 4728 1.480545 TGCTAGCATTGTAGCCTTCGA 59.519 47.619 14.93 0.00 44.23 3.71
4226 4731 3.738281 GCTAGCATTGTAGCCTTCGAAGA 60.738 47.826 26.61 5.55 39.74 2.87
4227 4732 2.898705 AGCATTGTAGCCTTCGAAGAG 58.101 47.619 26.61 16.63 33.64 2.85
4255 4764 5.761234 GGCTTCACCACGTAATAAATATCCA 59.239 40.000 0.00 0.00 38.86 3.41
4265 4774 8.889717 CACGTAATAAATATCCAGGTTTCTTGT 58.110 33.333 0.00 0.00 0.00 3.16
4266 4775 8.889717 ACGTAATAAATATCCAGGTTTCTTGTG 58.110 33.333 0.00 0.00 0.00 3.33
4273 4782 1.619654 CAGGTTTCTTGTGGCCATCA 58.380 50.000 9.72 6.28 0.00 3.07
4314 4823 1.867233 CGATTGTATGCTTCTTCCCCG 59.133 52.381 0.00 0.00 0.00 5.73
4319 4828 1.207329 GTATGCTTCTTCCCCGTCACT 59.793 52.381 0.00 0.00 0.00 3.41
4322 4831 2.742348 TGCTTCTTCCCCGTCACTATA 58.258 47.619 0.00 0.00 0.00 1.31
4325 4834 3.118884 GCTTCTTCCCCGTCACTATACAA 60.119 47.826 0.00 0.00 0.00 2.41
4329 4838 4.098960 TCTTCCCCGTCACTATACAACATC 59.901 45.833 0.00 0.00 0.00 3.06
4331 4840 4.028131 TCCCCGTCACTATACAACATCTT 58.972 43.478 0.00 0.00 0.00 2.40
4332 4841 4.119862 CCCCGTCACTATACAACATCTTG 58.880 47.826 0.00 0.00 0.00 3.02
4335 4844 6.049149 CCCGTCACTATACAACATCTTGAAT 58.951 40.000 0.00 0.00 0.00 2.57
4339 4848 7.412891 CGTCACTATACAACATCTTGAATGCAA 60.413 37.037 0.00 0.00 0.00 4.08
4349 4858 4.998671 TCTTGAATGCAACTTGTTTGGA 57.001 36.364 0.00 0.00 40.26 3.53
4359 4868 2.665165 ACTTGTTTGGACTTCCATGCA 58.335 42.857 0.00 0.00 46.97 3.96
4360 4869 3.233507 ACTTGTTTGGACTTCCATGCAT 58.766 40.909 0.00 0.00 46.97 3.96
4373 4882 5.182001 ACTTCCATGCATTCTTGTACTTCAC 59.818 40.000 0.00 0.00 0.00 3.18
4374 4883 4.009675 TCCATGCATTCTTGTACTTCACC 58.990 43.478 0.00 0.00 0.00 4.02
4384 4893 1.143889 TGTACTTCACCCCATGCACAA 59.856 47.619 0.00 0.00 0.00 3.33
4387 4896 1.619827 ACTTCACCCCATGCACAAATG 59.380 47.619 0.00 0.00 0.00 2.32
4411 4920 5.979517 GCCATTTGTATGACCTTTATCAAGC 59.020 40.000 0.00 0.00 33.37 4.01
4412 4921 6.405731 GCCATTTGTATGACCTTTATCAAGCA 60.406 38.462 0.00 0.00 33.37 3.91
4413 4922 7.546358 CCATTTGTATGACCTTTATCAAGCAA 58.454 34.615 0.00 0.00 33.37 3.91
4414 4923 7.489113 CCATTTGTATGACCTTTATCAAGCAAC 59.511 37.037 0.00 0.00 33.37 4.17
4415 4924 6.509418 TTGTATGACCTTTATCAAGCAACC 57.491 37.500 0.00 0.00 30.82 3.77
4416 4925 4.634004 TGTATGACCTTTATCAAGCAACCG 59.366 41.667 0.00 0.00 30.82 4.44
4417 4926 3.410631 TGACCTTTATCAAGCAACCGA 57.589 42.857 0.00 0.00 0.00 4.69
4418 4927 3.334691 TGACCTTTATCAAGCAACCGAG 58.665 45.455 0.00 0.00 0.00 4.63
4419 4928 3.244422 TGACCTTTATCAAGCAACCGAGT 60.244 43.478 0.00 0.00 0.00 4.18
4420 4929 3.074412 ACCTTTATCAAGCAACCGAGTG 58.926 45.455 0.00 0.00 0.00 3.51
4421 4930 2.159517 CCTTTATCAAGCAACCGAGTGC 60.160 50.000 2.38 2.38 45.28 4.40
4427 4936 3.966215 GCAACCGAGTGCTAGCAA 58.034 55.556 21.29 0.09 41.51 3.91
4428 4937 1.790387 GCAACCGAGTGCTAGCAAG 59.210 57.895 21.29 13.69 41.51 4.01
4429 4938 1.639298 GCAACCGAGTGCTAGCAAGG 61.639 60.000 21.29 23.61 41.51 3.61
4430 4939 1.021390 CAACCGAGTGCTAGCAAGGG 61.021 60.000 27.97 25.09 0.00 3.95
4431 4940 1.481056 AACCGAGTGCTAGCAAGGGT 61.481 55.000 27.97 25.59 0.00 4.34
4432 4941 1.296715 CCGAGTGCTAGCAAGGGTT 59.703 57.895 21.29 2.68 0.00 4.11
4433 4942 0.741221 CCGAGTGCTAGCAAGGGTTC 60.741 60.000 21.29 11.07 0.00 3.62
4434 4943 0.037326 CGAGTGCTAGCAAGGGTTCA 60.037 55.000 21.29 0.00 0.00 3.18
4441 4950 2.695359 CTAGCAAGGGTTCACGCTTTA 58.305 47.619 6.53 0.00 45.22 1.85
4461 4970 7.406553 GCTTTATAGTGTTTGCGTATTCATGA 58.593 34.615 0.00 0.00 0.00 3.07
4473 4982 0.647410 ATTCATGAGCGACGAAAGCG 59.353 50.000 0.00 0.00 44.79 4.68
4497 5006 1.723608 TTGGCCGACACTGCTTGTTG 61.724 55.000 0.00 0.47 39.17 3.33
4502 5011 1.230635 CGACACTGCTTGTTGGAGGG 61.231 60.000 0.00 0.00 43.70 4.30
4504 5013 1.529010 CACTGCTTGTTGGAGGGCA 60.529 57.895 0.00 0.00 38.54 5.36
4508 5017 1.079612 GCTTGTTGGAGGGCATTGC 60.080 57.895 0.00 0.00 0.00 3.56
4529 5039 3.262420 CGCCCTGCATAAGTGATATACC 58.738 50.000 0.00 0.00 0.00 2.73
4530 5040 3.306710 CGCCCTGCATAAGTGATATACCA 60.307 47.826 0.00 0.00 0.00 3.25
4531 5041 4.623886 CGCCCTGCATAAGTGATATACCAT 60.624 45.833 0.00 0.00 0.00 3.55
4532 5042 4.878397 GCCCTGCATAAGTGATATACCATC 59.122 45.833 0.00 0.00 0.00 3.51
4533 5043 5.111989 CCCTGCATAAGTGATATACCATCG 58.888 45.833 0.00 0.00 0.00 3.84
4566 5196 2.259012 ACATGAACAAACCATGGGCAT 58.741 42.857 18.09 6.67 44.11 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.351017 TGAAGGAGGAAAGAATGGCGT 59.649 47.619 0.00 0.00 0.00 5.68
54 55 2.360801 ACAAAGGCAAAATACACACGCT 59.639 40.909 0.00 0.00 0.00 5.07
69 70 2.543777 TCAGGAACCTCGAACAAAGG 57.456 50.000 0.00 0.00 39.96 3.11
71 72 2.610374 CGTTTCAGGAACCTCGAACAAA 59.390 45.455 12.88 0.00 34.67 2.83
87 88 5.995282 TCCATGGAATATCACCATACGTTTC 59.005 40.000 13.46 0.00 45.00 2.78
104 105 0.331278 ATTTTGGGCGAGTCCATGGA 59.669 50.000 11.44 11.44 36.58 3.41
173 174 3.532155 GTCGGGCGAGAGATGGCT 61.532 66.667 0.00 0.00 0.00 4.75
183 184 2.180204 CATTAAGGCTGGTCGGGCG 61.180 63.158 0.00 0.00 36.85 6.13
190 191 0.257039 AGGCTCCACATTAAGGCTGG 59.743 55.000 0.00 3.32 45.67 4.85
198 199 4.018960 ACATTGAGAAGTAGGCTCCACATT 60.019 41.667 0.00 0.00 0.00 2.71
226 262 2.064762 CAAGAGAGCAAACGGAGTCAG 58.935 52.381 0.00 0.00 45.00 3.51
230 266 2.918571 TGCAAGAGAGCAAACGGAG 58.081 52.632 0.00 0.00 42.46 4.63
256 292 3.516981 TGAAGAGAAGAAGGCGAGATG 57.483 47.619 0.00 0.00 0.00 2.90
259 295 4.122143 AGAATGAAGAGAAGAAGGCGAG 57.878 45.455 0.00 0.00 0.00 5.03
290 326 8.543774 AGAAGAGGCAATAAAAGTTAGAGATGA 58.456 33.333 0.00 0.00 0.00 2.92
326 365 5.110814 TGAGTTGAAGAGGGAAAGAAACA 57.889 39.130 0.00 0.00 0.00 2.83
334 373 5.363868 ACAATATCGATGAGTTGAAGAGGGA 59.636 40.000 19.98 0.00 0.00 4.20
352 391 5.003804 GGTGGAGGCGATGAATAACAATAT 58.996 41.667 0.00 0.00 0.00 1.28
382 421 5.520376 TGAAAAAGGAGAAGCTCAAAAGG 57.480 39.130 0.00 0.00 31.08 3.11
383 422 6.979465 AGATGAAAAAGGAGAAGCTCAAAAG 58.021 36.000 0.00 0.00 31.08 2.27
384 423 6.966534 AGATGAAAAAGGAGAAGCTCAAAA 57.033 33.333 0.00 0.00 31.08 2.44
385 424 6.015940 GGAAGATGAAAAAGGAGAAGCTCAAA 60.016 38.462 0.00 0.00 31.08 2.69
386 425 5.474876 GGAAGATGAAAAAGGAGAAGCTCAA 59.525 40.000 0.00 0.00 31.08 3.02
387 426 5.006386 GGAAGATGAAAAAGGAGAAGCTCA 58.994 41.667 0.00 0.00 31.08 4.26
388 427 5.252547 AGGAAGATGAAAAAGGAGAAGCTC 58.747 41.667 0.00 0.00 0.00 4.09
389 428 5.253991 AGGAAGATGAAAAAGGAGAAGCT 57.746 39.130 0.00 0.00 0.00 3.74
390 429 5.973899 AAGGAAGATGAAAAAGGAGAAGC 57.026 39.130 0.00 0.00 0.00 3.86
391 430 7.516198 TGAAAGGAAGATGAAAAAGGAGAAG 57.484 36.000 0.00 0.00 0.00 2.85
392 431 8.362639 CAATGAAAGGAAGATGAAAAAGGAGAA 58.637 33.333 0.00 0.00 0.00 2.87
393 432 7.039504 CCAATGAAAGGAAGATGAAAAAGGAGA 60.040 37.037 0.00 0.00 0.00 3.71
394 433 7.095270 CCAATGAAAGGAAGATGAAAAAGGAG 58.905 38.462 0.00 0.00 0.00 3.69
395 434 6.014327 CCCAATGAAAGGAAGATGAAAAAGGA 60.014 38.462 0.00 0.00 0.00 3.36
396 435 6.168389 CCCAATGAAAGGAAGATGAAAAAGG 58.832 40.000 0.00 0.00 0.00 3.11
421 460 2.461110 CCATTGTAGCACGGGTCGC 61.461 63.158 0.00 0.00 0.00 5.19
472 511 2.945668 AGAAAATCTCATAGTTGGGCGC 59.054 45.455 0.00 0.00 0.00 6.53
568 611 3.775661 TCATTTCATCGACTAGCACGA 57.224 42.857 13.43 13.43 43.65 4.35
606 649 2.225019 CAGAGATGGACAACTGCACAAC 59.775 50.000 0.00 0.00 0.00 3.32
607 650 2.104622 TCAGAGATGGACAACTGCACAA 59.895 45.455 0.00 0.00 0.00 3.33
612 655 5.005740 TCCATTTTCAGAGATGGACAACTG 58.994 41.667 11.70 0.00 45.14 3.16
613 656 5.246981 TCCATTTTCAGAGATGGACAACT 57.753 39.130 11.70 0.00 45.14 3.16
629 672 9.369904 CCGACATCTTTTATTTCAATTCCATTT 57.630 29.630 0.00 0.00 0.00 2.32
630 673 8.531146 ACCGACATCTTTTATTTCAATTCCATT 58.469 29.630 0.00 0.00 0.00 3.16
631 674 8.066612 ACCGACATCTTTTATTTCAATTCCAT 57.933 30.769 0.00 0.00 0.00 3.41
632 675 7.461182 ACCGACATCTTTTATTTCAATTCCA 57.539 32.000 0.00 0.00 0.00 3.53
633 676 7.812669 ACAACCGACATCTTTTATTTCAATTCC 59.187 33.333 0.00 0.00 0.00 3.01
634 677 8.742554 ACAACCGACATCTTTTATTTCAATTC 57.257 30.769 0.00 0.00 0.00 2.17
635 678 7.812669 GGACAACCGACATCTTTTATTTCAATT 59.187 33.333 0.00 0.00 0.00 2.32
636 679 7.040062 TGGACAACCGACATCTTTTATTTCAAT 60.040 33.333 0.00 0.00 39.42 2.57
637 680 6.263392 TGGACAACCGACATCTTTTATTTCAA 59.737 34.615 0.00 0.00 39.42 2.69
638 681 5.765677 TGGACAACCGACATCTTTTATTTCA 59.234 36.000 0.00 0.00 39.42 2.69
639 682 6.249035 TGGACAACCGACATCTTTTATTTC 57.751 37.500 0.00 0.00 39.42 2.17
640 683 6.659242 AGATGGACAACCGACATCTTTTATTT 59.341 34.615 0.00 0.00 46.64 1.40
641 684 6.180472 AGATGGACAACCGACATCTTTTATT 58.820 36.000 0.00 0.00 46.64 1.40
642 685 5.745227 AGATGGACAACCGACATCTTTTAT 58.255 37.500 0.00 0.00 46.64 1.40
643 686 5.160607 AGATGGACAACCGACATCTTTTA 57.839 39.130 0.00 0.00 46.64 1.52
644 687 4.021102 AGATGGACAACCGACATCTTTT 57.979 40.909 0.00 0.00 46.64 2.27
645 688 3.703001 AGATGGACAACCGACATCTTT 57.297 42.857 0.00 0.00 46.64 2.52
648 691 2.166459 TCAGAGATGGACAACCGACATC 59.834 50.000 0.00 0.00 40.90 3.06
649 692 2.179427 TCAGAGATGGACAACCGACAT 58.821 47.619 0.00 0.00 39.42 3.06
650 693 1.627864 TCAGAGATGGACAACCGACA 58.372 50.000 0.00 0.00 39.42 4.35
651 694 2.743636 TTCAGAGATGGACAACCGAC 57.256 50.000 0.00 0.00 39.42 4.79
652 695 3.762407 TTTTCAGAGATGGACAACCGA 57.238 42.857 0.00 0.00 39.42 4.69
726 770 5.530712 GAGGAATTAGGATGGTCGTCTAAC 58.469 45.833 0.00 0.00 0.00 2.34
729 773 2.623889 CGAGGAATTAGGATGGTCGTCT 59.376 50.000 0.00 0.00 0.00 4.18
732 776 3.454371 AACGAGGAATTAGGATGGTCG 57.546 47.619 0.00 0.00 0.00 4.79
754 798 7.415653 GCACTGAGCTGGCTAATTTATTAAACT 60.416 37.037 0.00 0.00 41.15 2.66
779 823 2.853281 GCCAAACTGTCTTGTTGTACGC 60.853 50.000 0.00 0.00 0.00 4.42
832 876 4.323477 CCCACGCCCTTTCGGACA 62.323 66.667 0.00 0.00 0.00 4.02
911 955 5.408909 TGAGTACAGAACGAACACACAAAAA 59.591 36.000 0.00 0.00 0.00 1.94
916 960 3.361053 CGATGAGTACAGAACGAACACAC 59.639 47.826 0.00 0.00 0.00 3.82
918 962 2.915463 CCGATGAGTACAGAACGAACAC 59.085 50.000 0.00 0.00 0.00 3.32
1271 1317 2.562912 GTCAGTTACCGTCGGCGA 59.437 61.111 12.93 4.99 41.33 5.54
1287 1333 1.213296 ATTCAGGGGGTATTCTGCGT 58.787 50.000 0.00 0.00 0.00 5.24
1291 1337 4.827284 CGCATTTAATTCAGGGGGTATTCT 59.173 41.667 0.00 0.00 0.00 2.40
1292 1338 4.558697 GCGCATTTAATTCAGGGGGTATTC 60.559 45.833 0.30 0.00 0.00 1.75
1303 1349 8.781067 TGTTAACAGATATGCGCATTTAATTC 57.219 30.769 30.42 16.72 0.00 2.17
1304 1350 8.405531 ACTGTTAACAGATATGCGCATTTAATT 58.594 29.630 36.14 18.01 46.59 1.40
1306 1352 7.315247 ACTGTTAACAGATATGCGCATTTAA 57.685 32.000 36.14 21.97 46.59 1.52
1378 1724 2.747396 AAAATGCCGTGCACATTGAT 57.253 40.000 18.64 0.00 43.04 2.57
1388 1734 2.353579 GCCGAACTATGTAAAATGCCGT 59.646 45.455 0.00 0.00 0.00 5.68
1404 1750 0.736325 GACTCTAAGCAAGCGCCGAA 60.736 55.000 2.29 0.00 39.83 4.30
1463 1809 4.311606 TCTACAAACACACACGCATACAT 58.688 39.130 0.00 0.00 0.00 2.29
1717 2075 6.679327 AAAGTAACTCACTGAACCTGTTTC 57.321 37.500 0.00 0.00 37.63 2.78
1737 2095 2.979813 GCAACCACATGAACGCTAAAAG 59.020 45.455 0.00 0.00 0.00 2.27
1745 2103 4.829064 TGTTAGAAGCAACCACATGAAC 57.171 40.909 0.00 0.00 0.00 3.18
1747 2105 8.046708 ACTAATATGTTAGAAGCAACCACATGA 58.953 33.333 15.37 0.00 39.77 3.07
1750 2108 8.100791 AGAACTAATATGTTAGAAGCAACCACA 58.899 33.333 15.37 0.00 39.77 4.17
1754 2112 9.760660 CACAAGAACTAATATGTTAGAAGCAAC 57.239 33.333 15.37 1.70 39.77 4.17
1802 2160 8.114331 TCAGACAAATTATGCAGAAGAACAAT 57.886 30.769 0.00 0.00 0.00 2.71
1803 2161 7.509141 TCAGACAAATTATGCAGAAGAACAA 57.491 32.000 0.00 0.00 0.00 2.83
1804 2162 7.692460 ATCAGACAAATTATGCAGAAGAACA 57.308 32.000 0.00 0.00 0.00 3.18
1811 2169 6.954616 TGCAAAATCAGACAAATTATGCAG 57.045 33.333 0.00 0.00 36.46 4.41
1994 2374 5.941788 ACAAATTCTCCAGAGGTTGTACTT 58.058 37.500 9.24 0.00 31.46 2.24
2019 2399 7.698506 ATTGTCATTCTCACAACAGAATCAT 57.301 32.000 0.00 0.00 40.52 2.45
2118 2499 3.515502 CCCCTGACAGAGTAATGTTCAGA 59.484 47.826 3.32 0.00 33.70 3.27
2131 2517 4.202441 CACATTCTTTATCCCCCTGACAG 58.798 47.826 0.00 0.00 0.00 3.51
2132 2518 3.591527 ACACATTCTTTATCCCCCTGACA 59.408 43.478 0.00 0.00 0.00 3.58
2137 2523 5.765182 CAGTGATACACATTCTTTATCCCCC 59.235 44.000 4.75 0.00 36.74 5.40
2298 2685 6.433093 AGGGAATGTAAAAGAATTACTTGCGT 59.567 34.615 0.69 0.00 38.98 5.24
2388 2775 6.513393 GCCCACTATTCGATAAAATGAACAGG 60.513 42.308 0.00 0.00 0.00 4.00
2701 3161 4.496840 GCGGTGCGTTTAAGGCTATTTTAT 60.497 41.667 10.94 0.00 0.00 1.40
2718 3178 1.008361 ACATTTGAAATGCGCGGTGC 61.008 50.000 17.19 6.58 46.70 5.01
2724 3184 2.409378 GCCAGTTGACATTTGAAATGCG 59.591 45.455 17.19 0.00 0.00 4.73
2761 3221 7.279313 TGAATACTAAAAATTACTCGCCCTGAC 59.721 37.037 0.00 0.00 0.00 3.51
2785 3245 4.881273 CCCGGACAAATATCTGATGTTTGA 59.119 41.667 32.75 3.52 41.95 2.69
2788 3248 3.214328 GCCCGGACAAATATCTGATGTT 58.786 45.455 0.73 0.00 0.00 2.71
2795 3255 3.139077 CCTACTTGCCCGGACAAATATC 58.861 50.000 0.73 0.00 0.00 1.63
2810 3299 6.322712 CAGTAAGAGGACTATGCTTCCTACTT 59.677 42.308 0.00 0.00 44.03 2.24
2833 3322 3.126343 GGTAGGCGTCAACCATTTTACAG 59.874 47.826 0.00 0.00 35.73 2.74
2853 3342 3.873910 CAAGATAATCGTTGGACCAGGT 58.126 45.455 0.00 0.00 0.00 4.00
2908 3397 2.964209 TGAAGGGCCAAAATGTTACCA 58.036 42.857 6.18 0.00 0.00 3.25
2910 3399 4.864704 TCTTGAAGGGCCAAAATGTTAC 57.135 40.909 6.18 0.00 0.00 2.50
2912 3401 6.625532 AATATCTTGAAGGGCCAAAATGTT 57.374 33.333 6.18 0.00 0.00 2.71
2985 3475 2.578021 ACCCACCTGATAGCAAACAGAT 59.422 45.455 0.00 0.00 36.38 2.90
2986 3476 1.985159 ACCCACCTGATAGCAAACAGA 59.015 47.619 0.00 0.00 36.38 3.41
3179 3669 9.269453 GTTGTACTAGAAGGAAACATAAACTGT 57.731 33.333 0.00 0.00 40.84 3.55
3180 3670 9.268268 TGTTGTACTAGAAGGAAACATAAACTG 57.732 33.333 0.00 0.00 0.00 3.16
3181 3671 9.269453 GTGTTGTACTAGAAGGAAACATAAACT 57.731 33.333 0.00 0.00 30.96 2.66
3182 3672 9.269453 AGTGTTGTACTAGAAGGAAACATAAAC 57.731 33.333 0.00 0.00 38.04 2.01
3183 3673 9.841295 AAGTGTTGTACTAGAAGGAAACATAAA 57.159 29.630 0.00 0.00 39.18 1.40
3184 3674 9.485206 GAAGTGTTGTACTAGAAGGAAACATAA 57.515 33.333 0.00 0.00 39.18 1.90
3185 3675 8.092687 GGAAGTGTTGTACTAGAAGGAAACATA 58.907 37.037 0.00 0.00 39.18 2.29
3186 3676 6.935208 GGAAGTGTTGTACTAGAAGGAAACAT 59.065 38.462 0.00 0.00 39.18 2.71
3187 3677 6.099269 AGGAAGTGTTGTACTAGAAGGAAACA 59.901 38.462 0.00 0.00 39.18 2.83
3188 3678 6.522946 AGGAAGTGTTGTACTAGAAGGAAAC 58.477 40.000 0.00 0.00 39.18 2.78
3189 3679 6.553852 AGAGGAAGTGTTGTACTAGAAGGAAA 59.446 38.462 0.00 0.00 39.18 3.13
3190 3680 6.075984 AGAGGAAGTGTTGTACTAGAAGGAA 58.924 40.000 0.00 0.00 39.18 3.36
3191 3681 5.642165 AGAGGAAGTGTTGTACTAGAAGGA 58.358 41.667 0.00 0.00 39.18 3.36
3192 3682 5.986501 AGAGGAAGTGTTGTACTAGAAGG 57.013 43.478 0.00 0.00 39.18 3.46
3193 3683 6.750148 ACAAGAGGAAGTGTTGTACTAGAAG 58.250 40.000 0.00 0.00 40.78 2.85
3194 3684 6.550108 AGACAAGAGGAAGTGTTGTACTAGAA 59.450 38.462 0.00 0.00 42.57 2.10
3195 3685 6.016192 CAGACAAGAGGAAGTGTTGTACTAGA 60.016 42.308 0.00 0.00 42.57 2.43
3196 3686 6.153067 CAGACAAGAGGAAGTGTTGTACTAG 58.847 44.000 0.00 0.00 42.57 2.57
3197 3687 5.597182 ACAGACAAGAGGAAGTGTTGTACTA 59.403 40.000 0.00 0.00 42.57 1.82
3198 3688 4.406003 ACAGACAAGAGGAAGTGTTGTACT 59.594 41.667 0.00 0.00 42.57 2.73
3199 3689 4.694339 ACAGACAAGAGGAAGTGTTGTAC 58.306 43.478 0.00 0.00 42.57 2.90
3200 3690 5.353394 AACAGACAAGAGGAAGTGTTGTA 57.647 39.130 0.00 0.00 42.57 2.41
3221 3711 8.675705 TGAAGATATCAACACAGACAAAGAAA 57.324 30.769 5.32 0.00 34.30 2.52
3238 3728 8.844244 GCTAGTTCACCAATTGATTGAAGATAT 58.156 33.333 17.82 10.15 40.14 1.63
3271 3761 8.660295 AATATGTTTGGATGATGCAGGATTAT 57.340 30.769 0.00 0.00 0.00 1.28
3302 3794 7.282224 ACTTAACTCAGTTTGAATACAGCAACA 59.718 33.333 0.00 0.00 0.00 3.33
3386 3878 6.100279 TGCCTGTACTATTGAGATCTCCAAAT 59.900 38.462 20.03 15.31 0.00 2.32
3435 3927 2.856760 TTAGCCTCTGGACATCCTCT 57.143 50.000 0.00 0.00 36.82 3.69
3549 4041 0.397114 TGATCTCGAGCAGCCCCTTA 60.397 55.000 7.81 0.00 0.00 2.69
3604 4096 6.426937 GCTGGAGTTGACAGTAAAATAACAGA 59.573 38.462 6.50 0.00 38.22 3.41
3610 4102 4.327680 GAGGCTGGAGTTGACAGTAAAAT 58.672 43.478 0.00 0.00 38.22 1.82
3694 4186 5.524511 CACAAAATGCACTCATCCAATTG 57.475 39.130 0.00 0.00 31.27 2.32
3749 4241 0.388649 GGCAAGAAGAGAGCGTCGAA 60.389 55.000 0.00 0.00 0.00 3.71
3752 4244 1.731720 ATTGGCAAGAAGAGAGCGTC 58.268 50.000 5.96 0.00 0.00 5.19
3774 4269 8.262601 ACATTACTTCCATGATACATCCACTA 57.737 34.615 0.00 0.00 0.00 2.74
3783 4278 4.988540 GCACGCTACATTACTTCCATGATA 59.011 41.667 0.00 0.00 0.00 2.15
3784 4279 3.809832 GCACGCTACATTACTTCCATGAT 59.190 43.478 0.00 0.00 0.00 2.45
3802 4298 1.656652 CCCTTCAATACCAGAGCACG 58.343 55.000 0.00 0.00 0.00 5.34
3814 4310 4.160065 CACCATCATACATTTGCCCTTCAA 59.840 41.667 0.00 0.00 0.00 2.69
3816 4312 3.701040 ACACCATCATACATTTGCCCTTC 59.299 43.478 0.00 0.00 0.00 3.46
3820 4316 3.004734 GGCTACACCATCATACATTTGCC 59.995 47.826 0.00 0.00 38.86 4.52
3852 4348 2.222007 AGAGAGCGTTGATCATCAGC 57.778 50.000 0.00 2.69 0.00 4.26
3866 4371 2.266554 GCACTTCCGATCACAAGAGAG 58.733 52.381 7.49 0.16 0.00 3.20
3883 4388 2.261215 CTTGGGAGCAGAAAGGCAC 58.739 57.895 0.00 0.00 35.83 5.01
3884 4389 4.828409 CTTGGGAGCAGAAAGGCA 57.172 55.556 0.00 0.00 35.83 4.75
3902 4407 2.414481 CTGTTCACCGAGCTCATTTGAG 59.586 50.000 15.40 3.13 44.75 3.02
3903 4408 2.224281 ACTGTTCACCGAGCTCATTTGA 60.224 45.455 15.40 9.55 0.00 2.69
3904 4409 2.146342 ACTGTTCACCGAGCTCATTTG 58.854 47.619 15.40 7.19 0.00 2.32
3905 4410 2.550830 ACTGTTCACCGAGCTCATTT 57.449 45.000 15.40 0.00 0.00 2.32
3906 4411 3.678056 TTACTGTTCACCGAGCTCATT 57.322 42.857 15.40 0.00 0.00 2.57
3907 4412 3.678056 TTTACTGTTCACCGAGCTCAT 57.322 42.857 15.40 0.00 0.00 2.90
3908 4413 3.462483 TTTTACTGTTCACCGAGCTCA 57.538 42.857 15.40 0.00 0.00 4.26
3909 4414 3.994392 TGATTTTACTGTTCACCGAGCTC 59.006 43.478 2.73 2.73 0.00 4.09
3910 4415 4.002906 TGATTTTACTGTTCACCGAGCT 57.997 40.909 0.00 0.00 0.00 4.09
3911 4416 4.742438 TTGATTTTACTGTTCACCGAGC 57.258 40.909 0.00 0.00 0.00 5.03
3912 4417 6.055231 TGTTTGATTTTACTGTTCACCGAG 57.945 37.500 0.00 0.00 0.00 4.63
3913 4418 6.438259 TTGTTTGATTTTACTGTTCACCGA 57.562 33.333 0.00 0.00 0.00 4.69
3914 4419 7.513190 TTTTGTTTGATTTTACTGTTCACCG 57.487 32.000 0.00 0.00 0.00 4.94
3956 4461 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
3957 4462 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
3958 4463 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
3959 4464 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
3960 4465 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
3961 4466 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
3962 4467 9.185192 CATTAGAACTTTTGTCAATGTTTCTCC 57.815 33.333 6.42 0.00 31.96 3.71
3963 4468 9.950680 TCATTAGAACTTTTGTCAATGTTTCTC 57.049 29.630 6.42 0.00 31.96 2.87
3968 4473 8.981647 GCAATTCATTAGAACTTTTGTCAATGT 58.018 29.630 0.00 0.00 36.39 2.71
3969 4474 8.980610 TGCAATTCATTAGAACTTTTGTCAATG 58.019 29.630 0.00 0.00 36.39 2.82
3970 4475 9.545105 TTGCAATTCATTAGAACTTTTGTCAAT 57.455 25.926 0.00 0.00 36.39 2.57
3971 4476 8.939201 TTGCAATTCATTAGAACTTTTGTCAA 57.061 26.923 0.00 0.00 36.39 3.18
3972 4477 8.939201 TTTGCAATTCATTAGAACTTTTGTCA 57.061 26.923 0.00 0.00 36.39 3.58
3973 4478 9.801714 CATTTGCAATTCATTAGAACTTTTGTC 57.198 29.630 0.00 0.00 36.39 3.18
3974 4479 9.545105 TCATTTGCAATTCATTAGAACTTTTGT 57.455 25.926 0.00 0.00 36.39 2.83
3975 4480 9.801714 GTCATTTGCAATTCATTAGAACTTTTG 57.198 29.630 0.00 0.00 36.39 2.44
3976 4481 9.545105 TGTCATTTGCAATTCATTAGAACTTTT 57.455 25.926 0.00 0.00 36.39 2.27
3977 4482 9.545105 TTGTCATTTGCAATTCATTAGAACTTT 57.455 25.926 0.00 0.00 36.39 2.66
3978 4483 9.715121 ATTGTCATTTGCAATTCATTAGAACTT 57.285 25.926 0.00 0.00 36.39 2.66
3979 4484 9.362539 GATTGTCATTTGCAATTCATTAGAACT 57.637 29.630 0.00 0.00 36.77 3.01
3980 4485 8.598075 GGATTGTCATTTGCAATTCATTAGAAC 58.402 33.333 0.00 0.00 36.77 3.01
3981 4486 8.533657 AGGATTGTCATTTGCAATTCATTAGAA 58.466 29.630 0.00 0.00 36.77 2.10
3982 4487 7.977293 CAGGATTGTCATTTGCAATTCATTAGA 59.023 33.333 0.00 0.00 36.77 2.10
3983 4488 7.762615 ACAGGATTGTCATTTGCAATTCATTAG 59.237 33.333 0.00 0.00 36.77 1.73
3984 4489 7.613585 ACAGGATTGTCATTTGCAATTCATTA 58.386 30.769 0.00 0.00 36.77 1.90
3985 4490 6.469410 ACAGGATTGTCATTTGCAATTCATT 58.531 32.000 0.00 0.00 36.77 2.57
3986 4491 6.045072 ACAGGATTGTCATTTGCAATTCAT 57.955 33.333 0.00 0.00 36.77 2.57
3987 4492 5.471556 ACAGGATTGTCATTTGCAATTCA 57.528 34.783 0.00 0.00 36.77 2.57
3988 4493 6.532657 CCTTACAGGATTGTCATTTGCAATTC 59.467 38.462 0.00 0.00 37.67 2.17
3989 4494 6.400568 CCTTACAGGATTGTCATTTGCAATT 58.599 36.000 0.00 0.00 37.67 2.32
3990 4495 5.625197 GCCTTACAGGATTGTCATTTGCAAT 60.625 40.000 0.00 0.00 37.67 3.56
3991 4496 4.321899 GCCTTACAGGATTGTCATTTGCAA 60.322 41.667 0.00 0.00 37.67 4.08
3992 4497 3.193267 GCCTTACAGGATTGTCATTTGCA 59.807 43.478 0.00 0.00 37.67 4.08
3993 4498 3.193267 TGCCTTACAGGATTGTCATTTGC 59.807 43.478 0.00 0.00 37.67 3.68
3994 4499 5.345702 CATGCCTTACAGGATTGTCATTTG 58.654 41.667 0.00 0.00 37.67 2.32
3995 4500 4.403432 CCATGCCTTACAGGATTGTCATTT 59.597 41.667 0.00 0.00 37.67 2.32
3996 4501 3.956199 CCATGCCTTACAGGATTGTCATT 59.044 43.478 0.00 0.00 37.67 2.57
3997 4502 3.559069 CCATGCCTTACAGGATTGTCAT 58.441 45.455 0.00 0.00 37.67 3.06
3998 4503 2.945440 GCCATGCCTTACAGGATTGTCA 60.945 50.000 0.00 0.00 37.67 3.58
3999 4504 1.678101 GCCATGCCTTACAGGATTGTC 59.322 52.381 0.00 0.00 37.67 3.18
4000 4505 1.005805 TGCCATGCCTTACAGGATTGT 59.994 47.619 0.00 0.00 37.67 2.71
4001 4506 1.766494 TGCCATGCCTTACAGGATTG 58.234 50.000 0.00 0.00 37.67 2.67
4002 4507 2.530460 TTGCCATGCCTTACAGGATT 57.470 45.000 0.00 0.00 37.67 3.01
4003 4508 2.530460 TTTGCCATGCCTTACAGGAT 57.470 45.000 0.00 0.00 37.67 3.24
4004 4509 2.300956 TTTTGCCATGCCTTACAGGA 57.699 45.000 0.00 0.00 37.67 3.86
4026 4531 7.474190 CATTTTGGAGCACTGAATTTGTTTTT 58.526 30.769 0.00 0.00 0.00 1.94
4027 4532 6.458615 GCATTTTGGAGCACTGAATTTGTTTT 60.459 34.615 0.00 0.00 0.00 2.43
4028 4533 5.007921 GCATTTTGGAGCACTGAATTTGTTT 59.992 36.000 0.00 0.00 0.00 2.83
4029 4534 4.512571 GCATTTTGGAGCACTGAATTTGTT 59.487 37.500 0.00 0.00 0.00 2.83
4030 4535 4.060205 GCATTTTGGAGCACTGAATTTGT 58.940 39.130 0.00 0.00 0.00 2.83
4031 4536 4.312443 AGCATTTTGGAGCACTGAATTTG 58.688 39.130 0.00 0.00 0.00 2.32
4032 4537 4.612264 AGCATTTTGGAGCACTGAATTT 57.388 36.364 0.00 0.00 0.00 1.82
4033 4538 4.612264 AAGCATTTTGGAGCACTGAATT 57.388 36.364 0.00 0.00 0.00 2.17
4034 4539 4.612264 AAAGCATTTTGGAGCACTGAAT 57.388 36.364 0.00 0.00 31.62 2.57
4051 4556 8.803201 ACTCTAAAAATGCTACTTTCAAAAGC 57.197 30.769 2.43 0.00 39.63 3.51
4054 4559 8.500773 CGGTACTCTAAAAATGCTACTTTCAAA 58.499 33.333 0.00 0.00 0.00 2.69
4055 4560 7.874016 TCGGTACTCTAAAAATGCTACTTTCAA 59.126 33.333 0.00 0.00 0.00 2.69
4056 4561 7.380536 TCGGTACTCTAAAAATGCTACTTTCA 58.619 34.615 0.00 0.00 0.00 2.69
4057 4562 7.823149 TCGGTACTCTAAAAATGCTACTTTC 57.177 36.000 0.00 0.00 0.00 2.62
4058 4563 8.788325 AATCGGTACTCTAAAAATGCTACTTT 57.212 30.769 0.00 0.00 0.00 2.66
4059 4564 8.788325 AAATCGGTACTCTAAAAATGCTACTT 57.212 30.769 0.00 0.00 0.00 2.24
4060 4565 8.788325 AAAATCGGTACTCTAAAAATGCTACT 57.212 30.769 0.00 0.00 0.00 2.57
4084 4589 2.577700 TCCTAGAAGGCGTTGCAAAAA 58.422 42.857 0.00 0.00 34.61 1.94
4085 4590 2.264005 TCCTAGAAGGCGTTGCAAAA 57.736 45.000 0.00 0.00 34.61 2.44
4086 4591 2.264005 TTCCTAGAAGGCGTTGCAAA 57.736 45.000 0.00 0.00 34.61 3.68
4087 4592 2.083774 CATTCCTAGAAGGCGTTGCAA 58.916 47.619 0.00 0.00 34.61 4.08
4088 4593 1.003118 ACATTCCTAGAAGGCGTTGCA 59.997 47.619 0.00 0.00 34.61 4.08
4089 4594 1.398390 CACATTCCTAGAAGGCGTTGC 59.602 52.381 0.00 0.00 34.61 4.17
4090 4595 2.972625 TCACATTCCTAGAAGGCGTTG 58.027 47.619 0.00 0.00 34.61 4.10
4091 4596 3.914426 ATCACATTCCTAGAAGGCGTT 57.086 42.857 0.00 0.00 34.61 4.84
4092 4597 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
4093 4598 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
4094 4599 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
4095 4600 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
4096 4601 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
4097 4602 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
4098 4603 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
4099 4604 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
4100 4605 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
4101 4606 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
4102 4607 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
4145 4650 3.806949 ACCTCAAATTAGCTTGGGACA 57.193 42.857 0.00 0.00 0.00 4.02
4146 4651 3.193479 CCAACCTCAAATTAGCTTGGGAC 59.807 47.826 0.00 0.00 0.00 4.46
4147 4652 3.430453 CCAACCTCAAATTAGCTTGGGA 58.570 45.455 0.00 0.00 0.00 4.37
4148 4653 2.497273 CCCAACCTCAAATTAGCTTGGG 59.503 50.000 6.87 6.87 41.42 4.12
4149 4654 3.056607 CACCCAACCTCAAATTAGCTTGG 60.057 47.826 0.00 0.00 0.00 3.61
4150 4655 3.614870 GCACCCAACCTCAAATTAGCTTG 60.615 47.826 0.00 0.00 0.00 4.01
4151 4656 2.562738 GCACCCAACCTCAAATTAGCTT 59.437 45.455 0.00 0.00 0.00 3.74
4152 4657 2.171003 GCACCCAACCTCAAATTAGCT 58.829 47.619 0.00 0.00 0.00 3.32
4153 4658 1.892474 TGCACCCAACCTCAAATTAGC 59.108 47.619 0.00 0.00 0.00 3.09
4154 4659 3.420893 TCTGCACCCAACCTCAAATTAG 58.579 45.455 0.00 0.00 0.00 1.73
4155 4660 3.517296 TCTGCACCCAACCTCAAATTA 57.483 42.857 0.00 0.00 0.00 1.40
4156 4661 2.380064 TCTGCACCCAACCTCAAATT 57.620 45.000 0.00 0.00 0.00 1.82
4157 4662 2.365293 GTTTCTGCACCCAACCTCAAAT 59.635 45.455 0.00 0.00 0.00 2.32
4158 4663 1.754226 GTTTCTGCACCCAACCTCAAA 59.246 47.619 0.00 0.00 0.00 2.69
4159 4664 1.064017 AGTTTCTGCACCCAACCTCAA 60.064 47.619 0.00 0.00 0.00 3.02
4160 4665 0.550914 AGTTTCTGCACCCAACCTCA 59.449 50.000 0.00 0.00 0.00 3.86
4161 4666 1.239347 GAGTTTCTGCACCCAACCTC 58.761 55.000 0.00 0.00 0.00 3.85
4162 4667 0.178990 GGAGTTTCTGCACCCAACCT 60.179 55.000 0.00 0.00 0.00 3.50
4163 4668 1.515521 CGGAGTTTCTGCACCCAACC 61.516 60.000 0.00 0.00 0.00 3.77
4164 4669 1.949257 CGGAGTTTCTGCACCCAAC 59.051 57.895 0.00 0.00 0.00 3.77
4165 4670 4.473643 CGGAGTTTCTGCACCCAA 57.526 55.556 0.00 0.00 0.00 4.12
4171 4676 2.048127 AGGACGCGGAGTTTCTGC 60.048 61.111 12.47 0.00 45.04 4.26
4172 4677 0.038159 AAGAGGACGCGGAGTTTCTG 60.038 55.000 12.47 0.00 30.72 3.02
4173 4678 0.038159 CAAGAGGACGCGGAGTTTCT 60.038 55.000 12.47 2.91 0.00 2.52
4174 4679 0.319641 ACAAGAGGACGCGGAGTTTC 60.320 55.000 12.47 0.00 0.00 2.78
4175 4680 0.600255 CACAAGAGGACGCGGAGTTT 60.600 55.000 12.47 0.00 0.00 2.66
4176 4681 1.006102 CACAAGAGGACGCGGAGTT 60.006 57.895 12.47 0.00 0.00 3.01
4177 4682 1.251527 ATCACAAGAGGACGCGGAGT 61.252 55.000 12.47 0.00 0.00 3.85
4178 4683 0.738975 TATCACAAGAGGACGCGGAG 59.261 55.000 12.47 0.00 0.00 4.63
4179 4684 0.454600 GTATCACAAGAGGACGCGGA 59.545 55.000 12.47 0.00 0.00 5.54
4180 4685 0.527817 GGTATCACAAGAGGACGCGG 60.528 60.000 12.47 0.00 0.00 6.46
4181 4686 0.172578 TGGTATCACAAGAGGACGCG 59.827 55.000 3.53 3.53 0.00 6.01
4182 4687 2.604046 ATGGTATCACAAGAGGACGC 57.396 50.000 0.00 0.00 0.00 5.19
4183 4688 3.990469 GCATATGGTATCACAAGAGGACG 59.010 47.826 4.56 0.00 0.00 4.79
4184 4689 5.220710 AGCATATGGTATCACAAGAGGAC 57.779 43.478 5.40 0.00 0.00 3.85
4185 4690 5.047021 GCTAGCATATGGTATCACAAGAGGA 60.047 44.000 14.70 0.00 0.00 3.71
4186 4691 5.174395 GCTAGCATATGGTATCACAAGAGG 58.826 45.833 14.70 2.02 0.00 3.69
4187 4692 5.787380 TGCTAGCATATGGTATCACAAGAG 58.213 41.667 14.93 4.15 0.00 2.85
4188 4693 5.806654 TGCTAGCATATGGTATCACAAGA 57.193 39.130 14.93 0.00 0.00 3.02
4189 4694 6.429078 ACAATGCTAGCATATGGTATCACAAG 59.571 38.462 29.77 13.45 35.31 3.16
4190 4695 6.298361 ACAATGCTAGCATATGGTATCACAA 58.702 36.000 29.77 0.00 35.31 3.33
4191 4696 5.868454 ACAATGCTAGCATATGGTATCACA 58.132 37.500 29.77 14.78 35.31 3.58
4192 4697 6.036517 GCTACAATGCTAGCATATGGTATCAC 59.963 42.308 29.77 17.99 39.26 3.06
4193 4698 6.108687 GCTACAATGCTAGCATATGGTATCA 58.891 40.000 29.77 17.89 39.26 2.15
4194 4699 5.525378 GGCTACAATGCTAGCATATGGTATC 59.475 44.000 29.77 23.20 40.96 2.24
4195 4700 5.190528 AGGCTACAATGCTAGCATATGGTAT 59.809 40.000 29.77 11.06 40.96 2.73
4196 4701 4.532126 AGGCTACAATGCTAGCATATGGTA 59.468 41.667 29.77 26.13 40.96 3.25
4216 4721 0.603975 AAGCCACACTCTTCGAAGGC 60.604 55.000 24.37 18.98 42.31 4.35
4242 4751 8.135529 GCCACAAGAAACCTGGATATTTATTAC 58.864 37.037 0.00 0.00 0.00 1.89
4248 4757 3.245586 TGGCCACAAGAAACCTGGATATT 60.246 43.478 0.00 0.00 0.00 1.28
4251 4760 0.482446 TGGCCACAAGAAACCTGGAT 59.518 50.000 0.00 0.00 0.00 3.41
4252 4761 0.482446 ATGGCCACAAGAAACCTGGA 59.518 50.000 8.16 0.00 0.00 3.86
4255 4764 1.620822 GTGATGGCCACAAGAAACCT 58.379 50.000 8.16 0.00 45.03 3.50
4265 4774 0.409092 ATTGTTGGGAGTGATGGCCA 59.591 50.000 8.56 8.56 0.00 5.36
4266 4775 1.560505 AATTGTTGGGAGTGATGGCC 58.439 50.000 0.00 0.00 0.00 5.36
4314 4823 7.307493 TGCATTCAAGATGTTGTATAGTGAC 57.693 36.000 2.11 0.00 34.98 3.67
4319 4828 8.109705 ACAAGTTGCATTCAAGATGTTGTATA 57.890 30.769 1.81 0.00 31.82 1.47
4322 4831 5.266733 ACAAGTTGCATTCAAGATGTTGT 57.733 34.783 1.81 0.00 31.82 3.32
4325 4834 5.051816 CCAAACAAGTTGCATTCAAGATGT 58.948 37.500 1.81 0.00 35.15 3.06
4329 4838 4.685924 AGTCCAAACAAGTTGCATTCAAG 58.314 39.130 1.81 0.00 35.74 3.02
4331 4840 4.441356 GGAAGTCCAAACAAGTTGCATTCA 60.441 41.667 1.81 0.00 35.74 2.57
4332 4841 4.051237 GGAAGTCCAAACAAGTTGCATTC 58.949 43.478 1.81 0.00 35.74 2.67
4335 4844 2.451490 TGGAAGTCCAAACAAGTTGCA 58.549 42.857 1.81 0.00 44.35 4.08
4349 4858 5.182001 GTGAAGTACAAGAATGCATGGAAGT 59.818 40.000 0.00 0.00 0.00 3.01
4359 4868 3.245229 TGCATGGGGTGAAGTACAAGAAT 60.245 43.478 0.00 0.00 0.00 2.40
4360 4869 2.107378 TGCATGGGGTGAAGTACAAGAA 59.893 45.455 0.00 0.00 0.00 2.52
4373 4882 0.253610 AATGGCATTTGTGCATGGGG 59.746 50.000 6.96 0.00 36.33 4.96
4374 4883 1.740585 CAAATGGCATTTGTGCATGGG 59.259 47.619 34.13 14.48 43.47 4.00
4384 4893 7.658525 TGATAAAGGTCATACAAATGGCATT 57.341 32.000 6.96 6.96 43.11 3.56
4387 4896 5.979517 GCTTGATAAAGGTCATACAAATGGC 59.020 40.000 0.00 0.00 36.96 4.40
4411 4920 1.021390 CCCTTGCTAGCACTCGGTTG 61.021 60.000 19.17 3.13 0.00 3.77
4412 4921 1.296715 CCCTTGCTAGCACTCGGTT 59.703 57.895 19.17 0.00 0.00 4.44
4413 4922 1.481056 AACCCTTGCTAGCACTCGGT 61.481 55.000 19.17 19.21 0.00 4.69
4414 4923 0.741221 GAACCCTTGCTAGCACTCGG 60.741 60.000 19.17 18.54 0.00 4.63
4415 4924 0.037326 TGAACCCTTGCTAGCACTCG 60.037 55.000 19.17 9.72 0.00 4.18
4416 4925 1.443802 GTGAACCCTTGCTAGCACTC 58.556 55.000 19.17 9.65 0.00 3.51
4417 4926 0.320771 CGTGAACCCTTGCTAGCACT 60.321 55.000 19.17 0.00 0.00 4.40
4418 4927 1.912371 GCGTGAACCCTTGCTAGCAC 61.912 60.000 19.17 5.26 0.00 4.40
4419 4928 1.671054 GCGTGAACCCTTGCTAGCA 60.671 57.895 14.93 14.93 0.00 3.49
4420 4929 0.955919 AAGCGTGAACCCTTGCTAGC 60.956 55.000 8.10 8.10 36.49 3.42
4421 4930 1.523758 AAAGCGTGAACCCTTGCTAG 58.476 50.000 0.00 0.00 36.49 3.42
4422 4931 2.843401 TAAAGCGTGAACCCTTGCTA 57.157 45.000 0.00 0.00 36.49 3.49
4423 4932 2.200373 ATAAAGCGTGAACCCTTGCT 57.800 45.000 0.00 0.00 39.89 3.91
4424 4933 3.007635 ACTATAAAGCGTGAACCCTTGC 58.992 45.455 0.00 0.00 0.00 4.01
4425 4934 4.000988 ACACTATAAAGCGTGAACCCTTG 58.999 43.478 0.00 0.00 35.23 3.61
4426 4935 4.281898 ACACTATAAAGCGTGAACCCTT 57.718 40.909 0.00 0.00 35.23 3.95
4427 4936 3.975168 ACACTATAAAGCGTGAACCCT 57.025 42.857 0.00 0.00 35.23 4.34
4428 4937 4.719040 CAAACACTATAAAGCGTGAACCC 58.281 43.478 0.00 0.00 35.23 4.11
4429 4938 4.156182 GCAAACACTATAAAGCGTGAACC 58.844 43.478 0.00 0.00 35.23 3.62
4430 4939 3.838550 CGCAAACACTATAAAGCGTGAAC 59.161 43.478 0.00 0.00 40.25 3.18
4431 4940 4.060288 CGCAAACACTATAAAGCGTGAA 57.940 40.909 0.00 0.00 40.25 3.18
4432 4941 3.715618 CGCAAACACTATAAAGCGTGA 57.284 42.857 0.00 0.00 40.25 4.35
4441 4950 4.025730 CGCTCATGAATACGCAAACACTAT 60.026 41.667 0.00 0.00 0.00 2.12
4453 4962 1.852280 CGCTTTCGTCGCTCATGAATA 59.148 47.619 0.00 0.00 29.66 1.75
4473 4982 2.033194 GCAGTGTCGGCCAACCTAC 61.033 63.158 2.24 0.00 32.23 3.18
4479 4988 2.186160 CAACAAGCAGTGTCGGCCA 61.186 57.895 2.24 0.00 40.60 5.36
4486 4995 0.896940 ATGCCCTCCAACAAGCAGTG 60.897 55.000 0.00 0.00 38.89 3.66
4508 5017 3.262420 GGTATATCACTTATGCAGGGCG 58.738 50.000 0.00 0.00 0.00 6.13
4513 5022 5.405935 AGCGATGGTATATCACTTATGCA 57.594 39.130 0.00 0.00 0.00 3.96
4517 5027 9.419297 GAATTTGTAGCGATGGTATATCACTTA 57.581 33.333 0.00 0.00 0.00 2.24
4529 5039 7.463544 TGTTCATGTAAGAATTTGTAGCGATG 58.536 34.615 0.00 0.00 0.00 3.84
4530 5040 7.609760 TGTTCATGTAAGAATTTGTAGCGAT 57.390 32.000 0.00 0.00 0.00 4.58
4531 5041 7.428282 TTGTTCATGTAAGAATTTGTAGCGA 57.572 32.000 0.00 0.00 0.00 4.93
4532 5042 7.060633 GGTTTGTTCATGTAAGAATTTGTAGCG 59.939 37.037 0.00 0.00 0.00 4.26
4533 5043 7.865385 TGGTTTGTTCATGTAAGAATTTGTAGC 59.135 33.333 0.00 0.00 0.00 3.58
4566 5196 4.058124 CACGTGGAGTTTGAGAAAGATGA 58.942 43.478 7.95 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.