Multiple sequence alignment - TraesCS3B01G406700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G406700 chr3B 100.000 2488 0 0 980 3467 642220091 642217604 0.000000e+00 4595.0
1 TraesCS3B01G406700 chr3B 94.144 1998 98 2 980 2959 690413734 690415730 0.000000e+00 3024.0
2 TraesCS3B01G406700 chr3B 93.939 1122 67 1 1839 2959 689010395 689009274 0.000000e+00 1694.0
3 TraesCS3B01G406700 chr3B 93.545 883 38 8 981 1844 689017573 689016691 0.000000e+00 1297.0
4 TraesCS3B01G406700 chr3B 100.000 636 0 0 1 636 642221070 642220435 0.000000e+00 1175.0
5 TraesCS3B01G406700 chr3D 92.828 1701 100 5 980 2661 523551288 523552985 0.000000e+00 2446.0
6 TraesCS3B01G406700 chr3D 95.728 1381 36 9 2087 3467 523331142 523332499 0.000000e+00 2202.0
7 TraesCS3B01G406700 chr3D 93.946 925 37 2 980 1886 523330219 523331142 0.000000e+00 1380.0
8 TraesCS3B01G406700 chr3D 93.191 470 31 1 2 471 17879863 17880331 0.000000e+00 689.0
9 TraesCS3B01G406700 chr3D 75.947 449 62 23 2460 2906 523552994 523553398 4.570000e-44 189.0
10 TraesCS3B01G406700 chr3D 90.000 70 6 1 484 552 523330064 523330133 4.770000e-14 89.8
11 TraesCS3B01G406700 chrUn 93.824 1344 82 1 1616 2959 354963302 354964644 0.000000e+00 2021.0
12 TraesCS3B01G406700 chrUn 93.175 1348 73 10 994 2323 400744838 400743492 0.000000e+00 1962.0
13 TraesCS3B01G406700 chrUn 93.584 639 23 1 994 1614 459185667 459185029 0.000000e+00 937.0
14 TraesCS3B01G406700 chr1B 91.458 480 32 2 1 472 8860502 8860980 0.000000e+00 651.0
15 TraesCS3B01G406700 chr1B 91.160 362 14 1 1119 1462 375808453 375808092 3.130000e-130 475.0
16 TraesCS3B01G406700 chr3A 90.110 273 10 2 981 1252 658295421 658295677 4.290000e-89 339.0
17 TraesCS3B01G406700 chr6D 96.104 77 3 0 3 79 359006909 359006985 3.630000e-25 126.0
18 TraesCS3B01G406700 chr2D 93.023 43 3 0 3160 3202 535096624 535096666 2.890000e-06 63.9
19 TraesCS3B01G406700 chr2B 93.023 43 3 0 3160 3202 636461545 636461587 2.890000e-06 63.9
20 TraesCS3B01G406700 chr2A 93.023 43 3 0 3160 3202 678360731 678360773 2.890000e-06 63.9
21 TraesCS3B01G406700 chr6A 97.222 36 0 1 3166 3201 603646037 603646071 3.740000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G406700 chr3B 642217604 642221070 3466 True 2885.000000 4595 100.000000 1 3467 2 chr3B.!!$R3 3466
1 TraesCS3B01G406700 chr3B 690413734 690415730 1996 False 3024.000000 3024 94.144000 980 2959 1 chr3B.!!$F1 1979
2 TraesCS3B01G406700 chr3B 689009274 689010395 1121 True 1694.000000 1694 93.939000 1839 2959 1 chr3B.!!$R1 1120
3 TraesCS3B01G406700 chr3B 689016691 689017573 882 True 1297.000000 1297 93.545000 981 1844 1 chr3B.!!$R2 863
4 TraesCS3B01G406700 chr3D 523551288 523553398 2110 False 1317.500000 2446 84.387500 980 2906 2 chr3D.!!$F3 1926
5 TraesCS3B01G406700 chr3D 523330064 523332499 2435 False 1223.933333 2202 93.224667 484 3467 3 chr3D.!!$F2 2983
6 TraesCS3B01G406700 chrUn 354963302 354964644 1342 False 2021.000000 2021 93.824000 1616 2959 1 chrUn.!!$F1 1343
7 TraesCS3B01G406700 chrUn 400743492 400744838 1346 True 1962.000000 1962 93.175000 994 2323 1 chrUn.!!$R1 1329
8 TraesCS3B01G406700 chrUn 459185029 459185667 638 True 937.000000 937 93.584000 994 1614 1 chrUn.!!$R2 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 631 0.034059 CCACACACACACTCCTCTCC 59.966 60.0 0.0 0.0 0.0 3.71 F
1833 1886 0.853530 AAGGAAGGCACAAGGAAGGT 59.146 50.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2029 0.109132 GCAATCAAACCCTTCCTGCG 60.109 55.0 0.00 0.0 0.00 5.18 R
3188 3419 0.110056 GATGCACGTGTTGAGCTTGG 60.110 55.0 18.38 0.0 34.96 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.395583 GGTCGCTCGTCGGTCGTT 62.396 66.667 0.00 0.00 40.80 3.85
24 25 3.164011 GTCGCTCGTCGGTCGTTG 61.164 66.667 0.00 0.00 40.80 4.10
27 28 3.470567 GCTCGTCGGTCGTTGCTG 61.471 66.667 0.00 0.00 40.80 4.41
28 29 2.050351 CTCGTCGGTCGTTGCTGT 60.050 61.111 0.00 0.00 40.80 4.40
29 30 2.354188 TCGTCGGTCGTTGCTGTG 60.354 61.111 0.00 0.00 40.80 3.66
30 31 3.403057 CGTCGGTCGTTGCTGTGG 61.403 66.667 0.00 0.00 34.52 4.17
31 32 2.279918 GTCGGTCGTTGCTGTGGT 60.280 61.111 0.00 0.00 0.00 4.16
32 33 2.279851 TCGGTCGTTGCTGTGGTG 60.280 61.111 0.00 0.00 0.00 4.17
33 34 3.345808 CGGTCGTTGCTGTGGTGG 61.346 66.667 0.00 0.00 0.00 4.61
34 35 2.203153 GGTCGTTGCTGTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
35 36 1.822186 GGTCGTTGCTGTGGTGGTT 60.822 57.895 0.00 0.00 0.00 3.67
36 37 1.355210 GTCGTTGCTGTGGTGGTTG 59.645 57.895 0.00 0.00 0.00 3.77
37 38 2.026014 CGTTGCTGTGGTGGTTGC 59.974 61.111 0.00 0.00 0.00 4.17
38 39 2.769539 CGTTGCTGTGGTGGTTGCA 61.770 57.895 0.00 0.00 0.00 4.08
39 40 1.515020 GTTGCTGTGGTGGTTGCAA 59.485 52.632 0.00 0.00 42.16 4.08
40 41 1.515020 TTGCTGTGGTGGTTGCAAC 59.485 52.632 21.59 21.59 39.98 4.17
41 42 1.253593 TTGCTGTGGTGGTTGCAACA 61.254 50.000 29.55 13.95 39.98 3.33
42 43 1.226945 GCTGTGGTGGTTGCAACAC 60.227 57.895 29.55 23.08 42.74 3.32
47 48 3.758172 GTGGTTGCAACACCGGAT 58.242 55.556 29.55 0.00 40.09 4.18
48 49 2.037871 GTGGTTGCAACACCGGATT 58.962 52.632 29.55 0.00 40.09 3.01
49 50 0.039527 GTGGTTGCAACACCGGATTC 60.040 55.000 29.55 11.13 40.09 2.52
50 51 0.179004 TGGTTGCAACACCGGATTCT 60.179 50.000 29.55 0.00 40.09 2.40
51 52 0.521735 GGTTGCAACACCGGATTCTC 59.478 55.000 29.55 5.70 0.00 2.87
52 53 0.521735 GTTGCAACACCGGATTCTCC 59.478 55.000 24.52 0.00 0.00 3.71
53 54 0.400213 TTGCAACACCGGATTCTCCT 59.600 50.000 9.46 0.00 33.30 3.69
54 55 0.400213 TGCAACACCGGATTCTCCTT 59.600 50.000 9.46 0.00 33.30 3.36
55 56 1.087501 GCAACACCGGATTCTCCTTC 58.912 55.000 9.46 0.00 33.30 3.46
56 57 1.610624 GCAACACCGGATTCTCCTTCA 60.611 52.381 9.46 0.00 33.30 3.02
57 58 2.941415 GCAACACCGGATTCTCCTTCAT 60.941 50.000 9.46 0.00 33.30 2.57
58 59 2.679837 CAACACCGGATTCTCCTTCATG 59.320 50.000 9.46 0.00 33.30 3.07
59 60 1.909302 ACACCGGATTCTCCTTCATGT 59.091 47.619 9.46 0.00 33.30 3.21
60 61 2.305927 ACACCGGATTCTCCTTCATGTT 59.694 45.455 9.46 0.00 33.30 2.71
61 62 2.679837 CACCGGATTCTCCTTCATGTTG 59.320 50.000 9.46 0.00 33.30 3.33
62 63 1.672881 CCGGATTCTCCTTCATGTTGC 59.327 52.381 0.00 0.00 33.30 4.17
63 64 2.636830 CGGATTCTCCTTCATGTTGCT 58.363 47.619 0.00 0.00 33.30 3.91
64 65 3.012518 CGGATTCTCCTTCATGTTGCTT 58.987 45.455 0.00 0.00 33.30 3.91
65 66 3.064545 CGGATTCTCCTTCATGTTGCTTC 59.935 47.826 0.00 0.00 33.30 3.86
66 67 4.012374 GGATTCTCCTTCATGTTGCTTCA 58.988 43.478 0.00 0.00 32.53 3.02
67 68 4.460382 GGATTCTCCTTCATGTTGCTTCAA 59.540 41.667 0.00 0.00 32.53 2.69
68 69 4.836125 TTCTCCTTCATGTTGCTTCAAC 57.164 40.909 2.96 2.96 43.78 3.18
69 70 3.149196 TCTCCTTCATGTTGCTTCAACC 58.851 45.455 7.17 0.00 42.96 3.77
70 71 2.886523 CTCCTTCATGTTGCTTCAACCA 59.113 45.455 7.17 0.00 42.96 3.67
71 72 3.499338 TCCTTCATGTTGCTTCAACCAT 58.501 40.909 7.17 0.00 42.96 3.55
72 73 3.256383 TCCTTCATGTTGCTTCAACCATG 59.744 43.478 7.17 10.06 42.96 3.66
73 74 3.581755 CTTCATGTTGCTTCAACCATGG 58.418 45.455 11.19 11.19 42.96 3.66
74 75 1.273048 TCATGTTGCTTCAACCATGGC 59.727 47.619 13.04 0.00 42.96 4.40
75 76 0.609662 ATGTTGCTTCAACCATGGCC 59.390 50.000 13.04 0.00 42.96 5.36
76 77 1.080569 GTTGCTTCAACCATGGCCG 60.081 57.895 13.04 2.62 38.30 6.13
77 78 2.929903 TTGCTTCAACCATGGCCGC 61.930 57.895 13.04 7.97 0.00 6.53
78 79 3.064324 GCTTCAACCATGGCCGCT 61.064 61.111 13.04 0.00 0.00 5.52
79 80 2.639327 GCTTCAACCATGGCCGCTT 61.639 57.895 13.04 0.00 0.00 4.68
80 81 1.213537 CTTCAACCATGGCCGCTTG 59.786 57.895 13.04 9.14 0.00 4.01
81 82 2.824071 CTTCAACCATGGCCGCTTGC 62.824 60.000 13.04 0.00 40.16 4.01
91 92 4.093952 CCGCTTGCCGCAACTGAG 62.094 66.667 0.38 0.00 39.08 3.35
92 93 3.043713 CGCTTGCCGCAACTGAGA 61.044 61.111 0.38 0.00 39.08 3.27
93 94 2.606961 CGCTTGCCGCAACTGAGAA 61.607 57.895 0.38 0.00 39.08 2.87
94 95 1.654220 GCTTGCCGCAACTGAGAAA 59.346 52.632 0.38 0.00 38.92 2.52
95 96 0.661483 GCTTGCCGCAACTGAGAAAC 60.661 55.000 0.38 0.00 38.92 2.78
96 97 0.947244 CTTGCCGCAACTGAGAAACT 59.053 50.000 0.38 0.00 0.00 2.66
97 98 1.334869 CTTGCCGCAACTGAGAAACTT 59.665 47.619 0.38 0.00 0.00 2.66
98 99 1.388547 TGCCGCAACTGAGAAACTTT 58.611 45.000 0.00 0.00 0.00 2.66
99 100 1.065401 TGCCGCAACTGAGAAACTTTG 59.935 47.619 0.00 0.00 0.00 2.77
100 101 1.758783 CCGCAACTGAGAAACTTTGC 58.241 50.000 0.00 0.00 40.80 3.68
101 102 1.065401 CCGCAACTGAGAAACTTTGCA 59.935 47.619 5.73 0.00 43.73 4.08
102 103 2.378806 CGCAACTGAGAAACTTTGCAG 58.621 47.619 5.73 0.00 43.73 4.41
103 104 2.122564 GCAACTGAGAAACTTTGCAGC 58.877 47.619 0.55 0.00 43.16 5.25
104 105 2.223665 GCAACTGAGAAACTTTGCAGCT 60.224 45.455 0.00 0.00 43.16 4.24
105 106 3.625938 CAACTGAGAAACTTTGCAGCTC 58.374 45.455 0.00 0.00 31.74 4.09
106 107 2.225467 ACTGAGAAACTTTGCAGCTCC 58.775 47.619 0.00 0.00 31.74 4.70
107 108 1.538950 CTGAGAAACTTTGCAGCTCCC 59.461 52.381 0.00 0.00 0.00 4.30
108 109 0.884514 GAGAAACTTTGCAGCTCCCC 59.115 55.000 0.00 0.00 0.00 4.81
109 110 0.890996 AGAAACTTTGCAGCTCCCCG 60.891 55.000 0.00 0.00 0.00 5.73
110 111 1.866853 GAAACTTTGCAGCTCCCCGG 61.867 60.000 0.00 0.00 0.00 5.73
111 112 2.351924 AAACTTTGCAGCTCCCCGGA 62.352 55.000 0.73 0.00 0.00 5.14
112 113 2.034066 CTTTGCAGCTCCCCGGAA 59.966 61.111 0.73 0.00 0.00 4.30
113 114 1.379044 CTTTGCAGCTCCCCGGAAT 60.379 57.895 0.73 0.00 0.00 3.01
114 115 0.967380 CTTTGCAGCTCCCCGGAATT 60.967 55.000 0.73 0.00 0.00 2.17
115 116 1.250154 TTTGCAGCTCCCCGGAATTG 61.250 55.000 0.73 0.00 0.00 2.32
116 117 2.135903 TTGCAGCTCCCCGGAATTGA 62.136 55.000 0.73 0.00 0.00 2.57
117 118 1.821332 GCAGCTCCCCGGAATTGAG 60.821 63.158 0.73 4.35 0.00 3.02
118 119 1.153086 CAGCTCCCCGGAATTGAGG 60.153 63.158 0.73 0.00 0.00 3.86
119 120 1.616628 AGCTCCCCGGAATTGAGGT 60.617 57.895 0.73 6.07 32.36 3.85
120 121 1.208165 AGCTCCCCGGAATTGAGGTT 61.208 55.000 0.73 0.00 33.34 3.50
121 122 1.032114 GCTCCCCGGAATTGAGGTTG 61.032 60.000 0.73 0.00 0.00 3.77
122 123 1.001393 TCCCCGGAATTGAGGTTGC 60.001 57.895 0.73 0.00 0.00 4.17
123 124 1.304052 CCCCGGAATTGAGGTTGCA 60.304 57.895 0.73 0.00 0.00 4.08
124 125 0.897863 CCCCGGAATTGAGGTTGCAA 60.898 55.000 0.73 0.00 0.00 4.08
125 126 0.243636 CCCGGAATTGAGGTTGCAAC 59.756 55.000 21.59 21.59 0.00 4.17
126 127 1.247567 CCGGAATTGAGGTTGCAACT 58.752 50.000 27.64 14.56 0.00 3.16
127 128 1.200020 CCGGAATTGAGGTTGCAACTC 59.800 52.381 27.64 21.59 35.55 3.01
128 129 1.200020 CGGAATTGAGGTTGCAACTCC 59.800 52.381 27.64 22.60 39.96 3.85
129 130 1.546029 GGAATTGAGGTTGCAACTCCC 59.454 52.381 27.64 17.02 38.01 4.30
130 131 2.519013 GAATTGAGGTTGCAACTCCCT 58.481 47.619 27.64 17.56 34.06 4.20
131 132 1.915141 ATTGAGGTTGCAACTCCCTG 58.085 50.000 27.64 0.00 34.06 4.45
132 133 0.823356 TTGAGGTTGCAACTCCCTGC 60.823 55.000 27.64 11.02 42.95 4.85
133 134 2.281761 AGGTTGCAACTCCCTGCG 60.282 61.111 27.64 0.00 45.74 5.18
134 135 3.365265 GGTTGCAACTCCCTGCGG 61.365 66.667 27.64 0.00 45.74 5.69
135 136 3.365265 GTTGCAACTCCCTGCGGG 61.365 66.667 22.36 3.88 45.74 6.13
136 137 3.884774 TTGCAACTCCCTGCGGGT 61.885 61.111 11.58 0.00 45.74 5.28
137 138 4.641645 TGCAACTCCCTGCGGGTG 62.642 66.667 11.58 12.00 45.74 4.61
154 155 2.429739 GCGGTTGCAGCTTCTTGC 60.430 61.111 0.00 0.00 44.33 4.01
165 166 0.933796 GCTTCTTGCTAGATGGACGC 59.066 55.000 11.84 0.00 38.95 5.19
166 167 1.740380 GCTTCTTGCTAGATGGACGCA 60.740 52.381 11.84 0.00 38.95 5.24
167 168 2.621338 CTTCTTGCTAGATGGACGCAA 58.379 47.619 0.00 0.00 40.93 4.85
168 169 2.988010 TCTTGCTAGATGGACGCAAT 57.012 45.000 0.00 0.00 42.10 3.56
169 170 4.371786 CTTCTTGCTAGATGGACGCAATA 58.628 43.478 0.00 0.00 42.10 1.90
170 171 4.607293 TCTTGCTAGATGGACGCAATAT 57.393 40.909 0.00 0.00 42.10 1.28
171 172 4.560128 TCTTGCTAGATGGACGCAATATC 58.440 43.478 0.00 0.00 42.10 1.63
172 173 3.319137 TGCTAGATGGACGCAATATCC 57.681 47.619 0.00 0.00 36.70 2.59
173 174 2.263077 GCTAGATGGACGCAATATCCG 58.737 52.381 0.00 0.00 39.30 4.18
174 175 2.881074 CTAGATGGACGCAATATCCGG 58.119 52.381 0.00 0.00 39.30 5.14
175 176 1.048601 AGATGGACGCAATATCCGGT 58.951 50.000 0.00 0.00 39.30 5.28
176 177 1.416401 AGATGGACGCAATATCCGGTT 59.584 47.619 0.00 0.00 39.30 4.44
177 178 2.631062 AGATGGACGCAATATCCGGTTA 59.369 45.455 0.00 0.00 39.30 2.85
178 179 2.983907 TGGACGCAATATCCGGTTAA 57.016 45.000 0.00 0.00 39.30 2.01
179 180 3.478857 TGGACGCAATATCCGGTTAAT 57.521 42.857 0.00 0.00 39.30 1.40
180 181 3.811083 TGGACGCAATATCCGGTTAATT 58.189 40.909 0.00 0.00 39.30 1.40
181 182 4.200874 TGGACGCAATATCCGGTTAATTT 58.799 39.130 0.00 0.00 39.30 1.82
182 183 4.273969 TGGACGCAATATCCGGTTAATTTC 59.726 41.667 0.00 0.00 39.30 2.17
183 184 4.451557 GACGCAATATCCGGTTAATTTCG 58.548 43.478 0.00 8.78 0.00 3.46
184 185 3.872771 ACGCAATATCCGGTTAATTTCGT 59.127 39.130 14.10 14.10 29.78 3.85
185 186 4.333372 ACGCAATATCCGGTTAATTTCGTT 59.667 37.500 14.10 4.17 30.31 3.85
186 187 4.668837 CGCAATATCCGGTTAATTTCGTTG 59.331 41.667 0.00 0.00 0.00 4.10
187 188 5.575019 GCAATATCCGGTTAATTTCGTTGT 58.425 37.500 0.00 0.00 0.00 3.32
188 189 5.454232 GCAATATCCGGTTAATTTCGTTGTG 59.546 40.000 0.00 0.00 0.00 3.33
189 190 2.973419 TCCGGTTAATTTCGTTGTGC 57.027 45.000 0.00 0.00 0.00 4.57
190 191 2.219458 TCCGGTTAATTTCGTTGTGCA 58.781 42.857 0.00 0.00 0.00 4.57
191 192 2.031857 TCCGGTTAATTTCGTTGTGCAC 60.032 45.455 10.75 10.75 0.00 4.57
192 193 2.312348 CGGTTAATTTCGTTGTGCACC 58.688 47.619 15.69 0.00 0.00 5.01
193 194 2.287069 CGGTTAATTTCGTTGTGCACCA 60.287 45.455 15.69 0.00 0.00 4.17
194 195 3.305110 GGTTAATTTCGTTGTGCACCAG 58.695 45.455 15.69 5.65 0.00 4.00
195 196 3.305110 GTTAATTTCGTTGTGCACCAGG 58.695 45.455 15.69 9.51 0.00 4.45
196 197 1.398692 AATTTCGTTGTGCACCAGGT 58.601 45.000 15.69 0.00 0.00 4.00
197 198 0.667993 ATTTCGTTGTGCACCAGGTG 59.332 50.000 16.16 16.16 36.51 4.00
198 199 1.380403 TTTCGTTGTGCACCAGGTGG 61.380 55.000 21.77 0.00 42.17 4.61
199 200 2.203139 CGTTGTGCACCAGGTGGA 60.203 61.111 21.77 16.55 38.94 4.02
200 201 1.600636 CGTTGTGCACCAGGTGGAT 60.601 57.895 21.77 0.00 36.11 3.41
201 202 1.172180 CGTTGTGCACCAGGTGGATT 61.172 55.000 21.77 0.00 36.11 3.01
202 203 1.039856 GTTGTGCACCAGGTGGATTT 58.960 50.000 21.77 0.00 36.11 2.17
203 204 1.039068 TTGTGCACCAGGTGGATTTG 58.961 50.000 21.77 0.00 36.11 2.32
204 205 0.184692 TGTGCACCAGGTGGATTTGA 59.815 50.000 21.77 1.53 36.11 2.69
205 206 0.883833 GTGCACCAGGTGGATTTGAG 59.116 55.000 21.77 0.00 36.11 3.02
206 207 0.251297 TGCACCAGGTGGATTTGAGG 60.251 55.000 21.77 0.00 38.94 3.86
207 208 0.967380 GCACCAGGTGGATTTGAGGG 60.967 60.000 21.77 0.00 38.94 4.30
208 209 0.698238 CACCAGGTGGATTTGAGGGA 59.302 55.000 12.40 0.00 38.94 4.20
209 210 0.995024 ACCAGGTGGATTTGAGGGAG 59.005 55.000 2.10 0.00 38.94 4.30
210 211 0.257039 CCAGGTGGATTTGAGGGAGG 59.743 60.000 0.00 0.00 37.39 4.30
211 212 0.394899 CAGGTGGATTTGAGGGAGGC 60.395 60.000 0.00 0.00 0.00 4.70
212 213 1.452108 GGTGGATTTGAGGGAGGCG 60.452 63.158 0.00 0.00 0.00 5.52
213 214 2.115291 GTGGATTTGAGGGAGGCGC 61.115 63.158 0.00 0.00 0.00 6.53
214 215 2.517166 GGATTTGAGGGAGGCGCC 60.517 66.667 21.89 21.89 0.00 6.53
215 216 2.272146 GATTTGAGGGAGGCGCCA 59.728 61.111 31.54 4.96 38.95 5.69
216 217 1.821332 GATTTGAGGGAGGCGCCAG 60.821 63.158 31.54 0.00 38.95 4.85
217 218 2.543067 GATTTGAGGGAGGCGCCAGT 62.543 60.000 31.54 9.09 38.95 4.00
218 219 2.826777 ATTTGAGGGAGGCGCCAGTG 62.827 60.000 31.54 0.00 38.95 3.66
233 234 3.977244 GTGGCAAGGGCAACGGTG 61.977 66.667 0.00 0.00 43.71 4.94
236 237 3.977244 GCAAGGGCAACGGTGGTG 61.977 66.667 0.90 0.00 40.72 4.17
237 238 3.294493 CAAGGGCAACGGTGGTGG 61.294 66.667 0.90 0.00 37.60 4.61
238 239 3.816090 AAGGGCAACGGTGGTGGT 61.816 61.111 0.90 0.00 37.60 4.16
239 240 3.785122 AAGGGCAACGGTGGTGGTC 62.785 63.158 0.90 0.00 37.60 4.02
241 242 4.922026 GGCAACGGTGGTGGTCGT 62.922 66.667 0.90 0.00 41.71 4.34
244 245 2.585698 AACGGTGGTGGTCGTTGT 59.414 55.556 0.00 0.00 46.03 3.32
245 246 1.522130 AACGGTGGTGGTCGTTGTC 60.522 57.895 0.00 0.00 46.03 3.18
246 247 1.963464 AACGGTGGTGGTCGTTGTCT 61.963 55.000 0.00 0.00 46.03 3.41
247 248 1.954146 CGGTGGTGGTCGTTGTCTG 60.954 63.158 0.00 0.00 0.00 3.51
248 249 2.251642 GGTGGTGGTCGTTGTCTGC 61.252 63.158 0.00 0.00 0.00 4.26
249 250 1.227556 GTGGTGGTCGTTGTCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
250 251 1.227527 TGGTGGTCGTTGTCTGCTG 60.228 57.895 0.00 0.00 0.00 4.41
251 252 1.961277 GGTGGTCGTTGTCTGCTGG 60.961 63.158 0.00 0.00 0.00 4.85
252 253 1.069090 GTGGTCGTTGTCTGCTGGA 59.931 57.895 0.00 0.00 0.00 3.86
253 254 0.320771 GTGGTCGTTGTCTGCTGGAT 60.321 55.000 0.00 0.00 0.00 3.41
254 255 0.320683 TGGTCGTTGTCTGCTGGATG 60.321 55.000 0.00 0.00 0.00 3.51
255 256 1.021390 GGTCGTTGTCTGCTGGATGG 61.021 60.000 0.00 0.00 0.00 3.51
256 257 0.037326 GTCGTTGTCTGCTGGATGGA 60.037 55.000 0.00 0.00 0.00 3.41
257 258 0.684535 TCGTTGTCTGCTGGATGGAA 59.315 50.000 0.00 0.00 0.00 3.53
258 259 1.071542 TCGTTGTCTGCTGGATGGAAA 59.928 47.619 0.00 0.00 0.00 3.13
259 260 2.086869 CGTTGTCTGCTGGATGGAAAT 58.913 47.619 0.00 0.00 0.00 2.17
260 261 2.159476 CGTTGTCTGCTGGATGGAAATG 60.159 50.000 0.00 0.00 0.00 2.32
261 262 3.084039 GTTGTCTGCTGGATGGAAATGA 58.916 45.455 0.00 0.00 0.00 2.57
262 263 2.715046 TGTCTGCTGGATGGAAATGAC 58.285 47.619 0.00 0.00 0.00 3.06
263 264 1.667724 GTCTGCTGGATGGAAATGACG 59.332 52.381 0.00 0.00 0.00 4.35
264 265 1.019673 CTGCTGGATGGAAATGACGG 58.980 55.000 0.00 0.00 0.00 4.79
265 266 0.617935 TGCTGGATGGAAATGACGGA 59.382 50.000 0.00 0.00 0.00 4.69
266 267 1.303309 GCTGGATGGAAATGACGGAG 58.697 55.000 0.00 0.00 0.00 4.63
267 268 1.134401 GCTGGATGGAAATGACGGAGA 60.134 52.381 0.00 0.00 0.00 3.71
268 269 2.486191 GCTGGATGGAAATGACGGAGAT 60.486 50.000 0.00 0.00 0.00 2.75
269 270 3.136763 CTGGATGGAAATGACGGAGATG 58.863 50.000 0.00 0.00 0.00 2.90
270 271 2.771372 TGGATGGAAATGACGGAGATGA 59.229 45.455 0.00 0.00 0.00 2.92
271 272 3.181462 TGGATGGAAATGACGGAGATGAG 60.181 47.826 0.00 0.00 0.00 2.90
272 273 3.070159 GGATGGAAATGACGGAGATGAGA 59.930 47.826 0.00 0.00 0.00 3.27
273 274 4.443457 GGATGGAAATGACGGAGATGAGAA 60.443 45.833 0.00 0.00 0.00 2.87
274 275 4.128925 TGGAAATGACGGAGATGAGAAG 57.871 45.455 0.00 0.00 0.00 2.85
275 276 3.769300 TGGAAATGACGGAGATGAGAAGA 59.231 43.478 0.00 0.00 0.00 2.87
276 277 4.116238 GGAAATGACGGAGATGAGAAGAC 58.884 47.826 0.00 0.00 0.00 3.01
277 278 3.428746 AATGACGGAGATGAGAAGACG 57.571 47.619 0.00 0.00 0.00 4.18
278 279 2.109425 TGACGGAGATGAGAAGACGA 57.891 50.000 0.00 0.00 0.00 4.20
279 280 2.644676 TGACGGAGATGAGAAGACGAT 58.355 47.619 0.00 0.00 0.00 3.73
280 281 2.356069 TGACGGAGATGAGAAGACGATG 59.644 50.000 0.00 0.00 0.00 3.84
281 282 1.678627 ACGGAGATGAGAAGACGATGG 59.321 52.381 0.00 0.00 0.00 3.51
282 283 1.000827 CGGAGATGAGAAGACGATGGG 60.001 57.143 0.00 0.00 0.00 4.00
283 284 1.342819 GGAGATGAGAAGACGATGGGG 59.657 57.143 0.00 0.00 0.00 4.96
284 285 2.311463 GAGATGAGAAGACGATGGGGA 58.689 52.381 0.00 0.00 0.00 4.81
285 286 2.896685 GAGATGAGAAGACGATGGGGAT 59.103 50.000 0.00 0.00 0.00 3.85
286 287 2.632028 AGATGAGAAGACGATGGGGATG 59.368 50.000 0.00 0.00 0.00 3.51
287 288 2.159179 TGAGAAGACGATGGGGATGA 57.841 50.000 0.00 0.00 0.00 2.92
288 289 2.034878 TGAGAAGACGATGGGGATGAG 58.965 52.381 0.00 0.00 0.00 2.90
289 290 2.311463 GAGAAGACGATGGGGATGAGA 58.689 52.381 0.00 0.00 0.00 3.27
290 291 2.695666 GAGAAGACGATGGGGATGAGAA 59.304 50.000 0.00 0.00 0.00 2.87
291 292 2.432510 AGAAGACGATGGGGATGAGAAC 59.567 50.000 0.00 0.00 0.00 3.01
292 293 0.747255 AGACGATGGGGATGAGAACG 59.253 55.000 0.00 0.00 0.00 3.95
293 294 0.744874 GACGATGGGGATGAGAACGA 59.255 55.000 0.00 0.00 0.00 3.85
294 295 0.747255 ACGATGGGGATGAGAACGAG 59.253 55.000 0.00 0.00 0.00 4.18
295 296 0.747255 CGATGGGGATGAGAACGAGT 59.253 55.000 0.00 0.00 0.00 4.18
296 297 1.536922 CGATGGGGATGAGAACGAGTG 60.537 57.143 0.00 0.00 0.00 3.51
297 298 1.757118 GATGGGGATGAGAACGAGTGA 59.243 52.381 0.00 0.00 0.00 3.41
298 299 1.639722 TGGGGATGAGAACGAGTGAA 58.360 50.000 0.00 0.00 0.00 3.18
299 300 1.974957 TGGGGATGAGAACGAGTGAAA 59.025 47.619 0.00 0.00 0.00 2.69
300 301 2.370519 TGGGGATGAGAACGAGTGAAAA 59.629 45.455 0.00 0.00 0.00 2.29
301 302 3.003480 GGGGATGAGAACGAGTGAAAAG 58.997 50.000 0.00 0.00 0.00 2.27
302 303 3.003480 GGGATGAGAACGAGTGAAAAGG 58.997 50.000 0.00 0.00 0.00 3.11
303 304 3.003480 GGATGAGAACGAGTGAAAAGGG 58.997 50.000 0.00 0.00 0.00 3.95
304 305 1.878953 TGAGAACGAGTGAAAAGGGC 58.121 50.000 0.00 0.00 0.00 5.19
305 306 1.416401 TGAGAACGAGTGAAAAGGGCT 59.584 47.619 0.00 0.00 0.00 5.19
306 307 1.801178 GAGAACGAGTGAAAAGGGCTG 59.199 52.381 0.00 0.00 0.00 4.85
307 308 0.875059 GAACGAGTGAAAAGGGCTGG 59.125 55.000 0.00 0.00 0.00 4.85
308 309 0.472471 AACGAGTGAAAAGGGCTGGA 59.528 50.000 0.00 0.00 0.00 3.86
309 310 0.035458 ACGAGTGAAAAGGGCTGGAG 59.965 55.000 0.00 0.00 0.00 3.86
310 311 0.321671 CGAGTGAAAAGGGCTGGAGA 59.678 55.000 0.00 0.00 0.00 3.71
311 312 1.674221 CGAGTGAAAAGGGCTGGAGAG 60.674 57.143 0.00 0.00 0.00 3.20
312 313 1.625818 GAGTGAAAAGGGCTGGAGAGA 59.374 52.381 0.00 0.00 0.00 3.10
313 314 2.039084 GAGTGAAAAGGGCTGGAGAGAA 59.961 50.000 0.00 0.00 0.00 2.87
314 315 2.443255 AGTGAAAAGGGCTGGAGAGAAA 59.557 45.455 0.00 0.00 0.00 2.52
315 316 2.816672 GTGAAAAGGGCTGGAGAGAAAG 59.183 50.000 0.00 0.00 0.00 2.62
316 317 2.711009 TGAAAAGGGCTGGAGAGAAAGA 59.289 45.455 0.00 0.00 0.00 2.52
317 318 3.244700 TGAAAAGGGCTGGAGAGAAAGAG 60.245 47.826 0.00 0.00 0.00 2.85
318 319 2.334006 AAGGGCTGGAGAGAAAGAGA 57.666 50.000 0.00 0.00 0.00 3.10
319 320 2.566708 AGGGCTGGAGAGAAAGAGAT 57.433 50.000 0.00 0.00 0.00 2.75
320 321 3.697190 AGGGCTGGAGAGAAAGAGATA 57.303 47.619 0.00 0.00 0.00 1.98
321 322 4.000928 AGGGCTGGAGAGAAAGAGATAA 57.999 45.455 0.00 0.00 0.00 1.75
322 323 3.966665 AGGGCTGGAGAGAAAGAGATAAG 59.033 47.826 0.00 0.00 0.00 1.73
323 324 3.070878 GGGCTGGAGAGAAAGAGATAAGG 59.929 52.174 0.00 0.00 0.00 2.69
324 325 3.709141 GGCTGGAGAGAAAGAGATAAGGT 59.291 47.826 0.00 0.00 0.00 3.50
325 326 4.202212 GGCTGGAGAGAAAGAGATAAGGTC 60.202 50.000 0.00 0.00 0.00 3.85
326 327 4.404073 GCTGGAGAGAAAGAGATAAGGTCA 59.596 45.833 0.00 0.00 0.00 4.02
327 328 5.105146 GCTGGAGAGAAAGAGATAAGGTCAA 60.105 44.000 0.00 0.00 0.00 3.18
328 329 6.537453 TGGAGAGAAAGAGATAAGGTCAAG 57.463 41.667 0.00 0.00 0.00 3.02
329 330 5.423610 TGGAGAGAAAGAGATAAGGTCAAGG 59.576 44.000 0.00 0.00 0.00 3.61
330 331 5.351948 AGAGAAAGAGATAAGGTCAAGGC 57.648 43.478 0.00 0.00 0.00 4.35
331 332 4.780021 AGAGAAAGAGATAAGGTCAAGGCA 59.220 41.667 0.00 0.00 0.00 4.75
332 333 5.096443 AGAAAGAGATAAGGTCAAGGCAG 57.904 43.478 0.00 0.00 0.00 4.85
333 334 4.780021 AGAAAGAGATAAGGTCAAGGCAGA 59.220 41.667 0.00 0.00 0.00 4.26
334 335 5.249393 AGAAAGAGATAAGGTCAAGGCAGAA 59.751 40.000 0.00 0.00 0.00 3.02
335 336 5.505181 AAGAGATAAGGTCAAGGCAGAAA 57.495 39.130 0.00 0.00 0.00 2.52
336 337 5.505181 AGAGATAAGGTCAAGGCAGAAAA 57.495 39.130 0.00 0.00 0.00 2.29
337 338 5.880901 AGAGATAAGGTCAAGGCAGAAAAA 58.119 37.500 0.00 0.00 0.00 1.94
338 339 5.942826 AGAGATAAGGTCAAGGCAGAAAAAG 59.057 40.000 0.00 0.00 0.00 2.27
339 340 4.460731 AGATAAGGTCAAGGCAGAAAAAGC 59.539 41.667 0.00 0.00 0.00 3.51
340 341 0.954452 AGGTCAAGGCAGAAAAAGCG 59.046 50.000 0.00 0.00 0.00 4.68
341 342 0.039165 GGTCAAGGCAGAAAAAGCGG 60.039 55.000 0.00 0.00 0.00 5.52
342 343 0.668535 GTCAAGGCAGAAAAAGCGGT 59.331 50.000 0.00 0.00 0.00 5.68
343 344 0.951558 TCAAGGCAGAAAAAGCGGTC 59.048 50.000 0.00 0.00 0.00 4.79
344 345 0.385974 CAAGGCAGAAAAAGCGGTCG 60.386 55.000 0.00 0.00 0.00 4.79
345 346 0.534203 AAGGCAGAAAAAGCGGTCGA 60.534 50.000 0.00 0.00 0.00 4.20
346 347 0.951040 AGGCAGAAAAAGCGGTCGAG 60.951 55.000 0.00 0.00 0.00 4.04
347 348 1.154395 GCAGAAAAAGCGGTCGAGC 60.154 57.895 4.06 4.06 37.41 5.03
348 349 1.130613 CAGAAAAAGCGGTCGAGCG 59.869 57.895 31.08 31.08 43.00 5.03
349 350 2.027625 AGAAAAAGCGGTCGAGCGG 61.028 57.895 34.69 18.63 43.00 5.52
350 351 3.023591 GAAAAAGCGGTCGAGCGGG 62.024 63.158 34.69 11.95 43.00 6.13
351 352 3.819877 AAAAAGCGGTCGAGCGGGT 62.820 57.895 34.69 19.77 43.00 5.28
352 353 4.736896 AAAGCGGTCGAGCGGGTC 62.737 66.667 34.69 20.18 43.00 4.46
357 358 3.998672 GGTCGAGCGGGTCCACAA 61.999 66.667 7.23 0.00 0.00 3.33
358 359 2.737376 GTCGAGCGGGTCCACAAC 60.737 66.667 0.98 0.00 0.00 3.32
359 360 3.228017 TCGAGCGGGTCCACAACA 61.228 61.111 0.98 0.00 0.00 3.33
360 361 3.041940 CGAGCGGGTCCACAACAC 61.042 66.667 0.98 0.00 0.00 3.32
391 392 3.231501 GACGGACTTCACGTGCAC 58.768 61.111 11.67 6.82 45.68 4.57
392 393 1.590525 GACGGACTTCACGTGCACA 60.591 57.895 18.64 0.00 45.68 4.57
393 394 1.548973 GACGGACTTCACGTGCACAG 61.549 60.000 18.64 12.16 45.68 3.66
394 395 2.310233 CGGACTTCACGTGCACAGG 61.310 63.158 18.64 8.09 32.85 4.00
395 396 1.069090 GGACTTCACGTGCACAGGA 59.931 57.895 18.64 10.57 33.62 3.86
396 397 0.531974 GGACTTCACGTGCACAGGAA 60.532 55.000 18.64 17.38 33.62 3.36
397 398 1.295792 GACTTCACGTGCACAGGAAA 58.704 50.000 18.64 4.31 0.00 3.13
398 399 1.003866 GACTTCACGTGCACAGGAAAC 60.004 52.381 18.64 11.73 0.00 2.78
399 400 1.013596 CTTCACGTGCACAGGAAACA 58.986 50.000 18.64 0.00 0.00 2.83
400 401 1.003545 CTTCACGTGCACAGGAAACAG 60.004 52.381 18.64 4.30 0.00 3.16
401 402 0.813610 TCACGTGCACAGGAAACAGG 60.814 55.000 18.64 0.00 0.00 4.00
402 403 2.186826 ACGTGCACAGGAAACAGGC 61.187 57.895 18.64 0.00 0.00 4.85
403 404 2.186160 CGTGCACAGGAAACAGGCA 61.186 57.895 18.64 0.00 0.00 4.75
404 405 1.656441 GTGCACAGGAAACAGGCAG 59.344 57.895 13.17 0.00 34.36 4.85
405 406 1.529010 TGCACAGGAAACAGGCAGG 60.529 57.895 0.00 0.00 0.00 4.85
406 407 2.270986 GCACAGGAAACAGGCAGGG 61.271 63.158 0.00 0.00 0.00 4.45
407 408 1.604593 CACAGGAAACAGGCAGGGG 60.605 63.158 0.00 0.00 0.00 4.79
408 409 2.677875 CAGGAAACAGGCAGGGGC 60.678 66.667 0.00 0.00 40.13 5.80
439 440 3.793144 GCACGAGCCGGCTGAAAG 61.793 66.667 38.41 23.65 33.58 2.62
440 441 2.357517 CACGAGCCGGCTGAAAGT 60.358 61.111 38.41 24.35 35.30 2.66
441 442 1.961277 CACGAGCCGGCTGAAAGTT 60.961 57.895 38.41 8.09 35.30 2.66
442 443 1.668151 ACGAGCCGGCTGAAAGTTC 60.668 57.895 38.41 17.26 35.30 3.01
443 444 2.730672 CGAGCCGGCTGAAAGTTCG 61.731 63.158 38.41 25.54 35.30 3.95
450 451 3.788766 CTGAAAGTTCGGCCGGCG 61.789 66.667 27.83 16.23 0.00 6.46
468 469 2.126888 CGCCGAACGCAAGCATTT 60.127 55.556 0.00 0.00 45.62 2.32
469 470 1.133664 CGCCGAACGCAAGCATTTA 59.866 52.632 0.00 0.00 45.62 1.40
470 471 1.125847 CGCCGAACGCAAGCATTTAC 61.126 55.000 0.00 0.00 45.62 2.01
471 472 0.796870 GCCGAACGCAAGCATTTACC 60.797 55.000 0.00 0.00 45.62 2.85
472 473 0.519519 CCGAACGCAAGCATTTACCA 59.480 50.000 0.00 0.00 45.62 3.25
473 474 1.132262 CCGAACGCAAGCATTTACCAT 59.868 47.619 0.00 0.00 45.62 3.55
474 475 2.415357 CCGAACGCAAGCATTTACCATT 60.415 45.455 0.00 0.00 45.62 3.16
475 476 3.241701 CGAACGCAAGCATTTACCATTT 58.758 40.909 0.00 0.00 45.62 2.32
476 477 3.672867 CGAACGCAAGCATTTACCATTTT 59.327 39.130 0.00 0.00 45.62 1.82
477 478 4.149747 CGAACGCAAGCATTTACCATTTTT 59.850 37.500 0.00 0.00 45.62 1.94
478 479 5.590104 AACGCAAGCATTTACCATTTTTC 57.410 34.783 0.00 0.00 45.62 2.29
479 480 4.626042 ACGCAAGCATTTACCATTTTTCA 58.374 34.783 0.00 0.00 45.62 2.69
480 481 5.053145 ACGCAAGCATTTACCATTTTTCAA 58.947 33.333 0.00 0.00 45.62 2.69
481 482 5.700373 ACGCAAGCATTTACCATTTTTCAAT 59.300 32.000 0.00 0.00 45.62 2.57
482 483 6.016718 CGCAAGCATTTACCATTTTTCAATG 58.983 36.000 0.00 0.00 39.79 2.82
536 537 1.019278 GCTTCGCCAGTGGAAATCGA 61.019 55.000 15.20 9.61 0.00 3.59
571 606 0.543749 GGCTAAGCCCATCTCACTGT 59.456 55.000 0.00 0.00 44.06 3.55
575 610 1.903877 AAGCCCATCTCACTGTCCCG 61.904 60.000 0.00 0.00 0.00 5.14
587 622 4.555709 GTCCCGGCCACACACACA 62.556 66.667 2.24 0.00 0.00 3.72
588 623 4.555709 TCCCGGCCACACACACAC 62.556 66.667 2.24 0.00 0.00 3.82
589 624 4.562425 CCCGGCCACACACACACT 62.562 66.667 2.24 0.00 0.00 3.55
590 625 2.972505 CCGGCCACACACACACTC 60.973 66.667 2.24 0.00 0.00 3.51
592 627 2.510906 GGCCACACACACACTCCT 59.489 61.111 0.00 0.00 0.00 3.69
593 628 1.598130 GGCCACACACACACTCCTC 60.598 63.158 0.00 0.00 0.00 3.71
594 629 1.447643 GCCACACACACACTCCTCT 59.552 57.895 0.00 0.00 0.00 3.69
596 631 0.034059 CCACACACACACTCCTCTCC 59.966 60.000 0.00 0.00 0.00 3.71
597 632 1.043816 CACACACACACTCCTCTCCT 58.956 55.000 0.00 0.00 0.00 3.69
599 634 1.133325 ACACACACACTCCTCTCCTCT 60.133 52.381 0.00 0.00 0.00 3.69
602 637 1.080638 ACACACTCCTCTCCTCTCCT 58.919 55.000 0.00 0.00 0.00 3.69
605 640 1.284785 ACACTCCTCTCCTCTCCTCTG 59.715 57.143 0.00 0.00 0.00 3.35
606 641 1.563879 CACTCCTCTCCTCTCCTCTGA 59.436 57.143 0.00 0.00 0.00 3.27
607 642 2.175499 CACTCCTCTCCTCTCCTCTGAT 59.825 54.545 0.00 0.00 0.00 2.90
608 643 2.858768 ACTCCTCTCCTCTCCTCTGATT 59.141 50.000 0.00 0.00 0.00 2.57
609 644 3.272020 ACTCCTCTCCTCTCCTCTGATTT 59.728 47.826 0.00 0.00 0.00 2.17
610 645 3.638160 CTCCTCTCCTCTCCTCTGATTTG 59.362 52.174 0.00 0.00 0.00 2.32
611 646 3.012274 TCCTCTCCTCTCCTCTGATTTGT 59.988 47.826 0.00 0.00 0.00 2.83
612 647 3.384467 CCTCTCCTCTCCTCTGATTTGTC 59.616 52.174 0.00 0.00 0.00 3.18
613 648 4.280819 CTCTCCTCTCCTCTGATTTGTCT 58.719 47.826 0.00 0.00 0.00 3.41
614 649 4.277476 TCTCCTCTCCTCTGATTTGTCTC 58.723 47.826 0.00 0.00 0.00 3.36
615 650 4.022603 CTCCTCTCCTCTGATTTGTCTCA 58.977 47.826 0.00 0.00 0.00 3.27
616 651 4.420206 TCCTCTCCTCTGATTTGTCTCAA 58.580 43.478 0.00 0.00 0.00 3.02
617 652 4.840680 TCCTCTCCTCTGATTTGTCTCAAA 59.159 41.667 0.00 0.00 0.00 2.69
618 653 5.307976 TCCTCTCCTCTGATTTGTCTCAAAA 59.692 40.000 0.00 0.00 0.00 2.44
619 654 6.000219 CCTCTCCTCTGATTTGTCTCAAAAA 59.000 40.000 0.00 0.00 0.00 1.94
1404 1457 2.477176 CCTCCAGCTCGTCCTCTCG 61.477 68.421 0.00 0.00 0.00 4.04
1440 1493 1.136774 CGACGACTCCATCTTCGCA 59.863 57.895 0.00 0.00 41.52 5.10
1633 1686 1.141019 GACGCCATCCGCTTCTACA 59.859 57.895 0.00 0.00 41.76 2.74
1654 1707 1.591703 GAGATGACCAGCGTCCACA 59.408 57.895 0.00 0.00 38.32 4.17
1698 1751 5.702670 CACCTTCAACATACTCATCAACAGT 59.297 40.000 0.00 0.00 0.00 3.55
1833 1886 0.853530 AAGGAAGGCACAAGGAAGGT 59.146 50.000 0.00 0.00 0.00 3.50
1878 1931 4.410400 CTTGGGGTCGGGCTGTCC 62.410 72.222 0.45 0.45 0.00 4.02
1931 1984 4.821589 CCGTGGAGGCGAGGCTTC 62.822 72.222 0.00 0.00 33.80 3.86
1945 1998 1.375268 GCTTCGAAGGCAGCAGAGT 60.375 57.895 25.77 0.00 34.90 3.24
1947 2000 1.673033 GCTTCGAAGGCAGCAGAGTTA 60.673 52.381 25.77 0.00 34.90 2.24
1976 2029 2.093537 TTTTTGGTGGATGCGGTGGC 62.094 55.000 0.00 0.00 40.52 5.01
2013 2066 2.358957 TGCTTGGATCTGGTTGAATCG 58.641 47.619 0.00 0.00 0.00 3.34
2113 2166 3.307906 TCCCTGCTGGCGTAACGT 61.308 61.111 3.63 0.00 0.00 3.99
2128 2181 3.666902 CGTAACGTTTCTGGATTGCTTGG 60.667 47.826 5.91 0.00 0.00 3.61
2141 2194 2.045926 CTTGGTGAAGGCGGGGAG 60.046 66.667 0.00 0.00 0.00 4.30
2179 2232 2.379005 GGTTGATGGGAAGGATGGTTC 58.621 52.381 0.00 0.00 0.00 3.62
2244 2297 0.183492 AGGCACTTTGTGAAGCTGGA 59.817 50.000 1.52 0.00 36.29 3.86
2313 2367 0.036732 TTCAGGCTGATGGTGTGACC 59.963 55.000 19.50 0.00 39.22 4.02
2356 2410 1.923909 GGTAGGCAGGGAAGGGTGT 60.924 63.158 0.00 0.00 0.00 4.16
2684 2915 4.411327 TGCGAAATTCCAATGATTCGAAC 58.589 39.130 0.00 0.00 45.45 3.95
2719 2950 7.639113 TTTGATTATGCCCTTTAGTTCGAAT 57.361 32.000 0.00 0.00 0.00 3.34
2728 2959 7.208080 TGCCCTTTAGTTCGAATATTAGTCTC 58.792 38.462 0.00 0.00 0.00 3.36
2814 3045 9.694137 GGACTCATGGTATCTGTAAATAGTTAC 57.306 37.037 6.13 6.13 40.15 2.50
2816 3047 7.866393 ACTCATGGTATCTGTAAATAGTTACGC 59.134 37.037 8.42 0.00 42.26 4.42
2983 3214 7.930865 TGGTTGTTTGGATTGGAAGAAATTAAG 59.069 33.333 0.00 0.00 0.00 1.85
3002 3233 6.817765 TTAAGCTGGGTTATCAGAAAACAG 57.182 37.500 0.00 0.00 36.93 3.16
3096 3327 7.575414 TGTTTGGACTAAAAATGCTTCTACA 57.425 32.000 0.00 0.00 0.00 2.74
3127 3358 1.818060 TGGGAAATCCAATGAACAGCG 59.182 47.619 1.22 0.00 43.84 5.18
3164 3395 1.453015 ACGCACCCAAGCAAGAACA 60.453 52.632 0.00 0.00 0.00 3.18
3165 3396 0.823356 ACGCACCCAAGCAAGAACAT 60.823 50.000 0.00 0.00 0.00 2.71
3173 3404 2.232941 CCAAGCAAGAACATGAAGCCAT 59.767 45.455 0.00 0.00 0.00 4.40
3181 3412 2.121645 CATGAAGCCATGGCCTTCC 58.878 57.895 33.14 19.00 44.88 3.46
3182 3413 0.396695 CATGAAGCCATGGCCTTCCT 60.397 55.000 33.14 22.49 44.88 3.36
3183 3414 0.106318 ATGAAGCCATGGCCTTCCTC 60.106 55.000 33.14 20.47 43.17 3.71
3184 3415 1.454663 GAAGCCATGGCCTTCCTCC 60.455 63.158 33.14 10.57 43.17 4.30
3185 3416 1.931007 GAAGCCATGGCCTTCCTCCT 61.931 60.000 33.14 9.27 43.17 3.69
3186 3417 1.931007 AAGCCATGGCCTTCCTCCTC 61.931 60.000 33.14 1.44 43.17 3.71
3187 3418 2.922234 CCATGGCCTTCCTCCTCC 59.078 66.667 3.32 0.00 0.00 4.30
3188 3419 2.761465 CCATGGCCTTCCTCCTCCC 61.761 68.421 3.32 0.00 0.00 4.30
3189 3420 2.368878 ATGGCCTTCCTCCTCCCC 60.369 66.667 3.32 0.00 0.00 4.81
3190 3421 3.287954 ATGGCCTTCCTCCTCCCCA 62.288 63.158 3.32 0.00 0.00 4.96
3191 3422 2.614013 GGCCTTCCTCCTCCCCAA 60.614 66.667 0.00 0.00 0.00 4.12
3192 3423 2.684499 GGCCTTCCTCCTCCCCAAG 61.684 68.421 0.00 0.00 0.00 3.61
3193 3424 3.002371 CCTTCCTCCTCCCCAAGC 58.998 66.667 0.00 0.00 0.00 4.01
3194 3425 1.617839 CCTTCCTCCTCCCCAAGCT 60.618 63.158 0.00 0.00 0.00 3.74
3195 3426 1.631071 CCTTCCTCCTCCCCAAGCTC 61.631 65.000 0.00 0.00 0.00 4.09
3196 3427 0.911525 CTTCCTCCTCCCCAAGCTCA 60.912 60.000 0.00 0.00 0.00 4.26
3197 3428 0.475632 TTCCTCCTCCCCAAGCTCAA 60.476 55.000 0.00 0.00 0.00 3.02
3198 3429 1.201429 TCCTCCTCCCCAAGCTCAAC 61.201 60.000 0.00 0.00 0.00 3.18
3199 3430 1.492133 CCTCCTCCCCAAGCTCAACA 61.492 60.000 0.00 0.00 0.00 3.33
3200 3431 0.322008 CTCCTCCCCAAGCTCAACAC 60.322 60.000 0.00 0.00 0.00 3.32
3230 3461 1.843368 CAAATCACCCCTGCATCTGT 58.157 50.000 0.00 0.00 0.00 3.41
3382 3613 8.711457 CAACAGATTTATGTTTGGATTTGGAAC 58.289 33.333 0.00 0.00 41.41 3.62
3434 3665 3.525537 ACTATGAGAAATGGCTGACACG 58.474 45.455 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.395583 AACGACCGACGAGCGACC 62.396 66.667 14.51 0.00 45.77 4.79
7 8 3.164011 CAACGACCGACGAGCGAC 61.164 66.667 14.51 0.00 45.77 5.19
10 11 3.470567 CAGCAACGACCGACGAGC 61.471 66.667 0.00 10.93 45.77 5.03
11 12 2.050351 ACAGCAACGACCGACGAG 60.050 61.111 0.00 0.00 45.77 4.18
12 13 2.354188 CACAGCAACGACCGACGA 60.354 61.111 0.00 0.00 45.77 4.20
14 15 2.279918 ACCACAGCAACGACCGAC 60.280 61.111 0.00 0.00 0.00 4.79
15 16 2.279851 CACCACAGCAACGACCGA 60.280 61.111 0.00 0.00 0.00 4.69
16 17 3.345808 CCACCACAGCAACGACCG 61.346 66.667 0.00 0.00 0.00 4.79
17 18 1.822186 AACCACCACAGCAACGACC 60.822 57.895 0.00 0.00 0.00 4.79
18 19 1.355210 CAACCACCACAGCAACGAC 59.645 57.895 0.00 0.00 0.00 4.34
19 20 2.477176 GCAACCACCACAGCAACGA 61.477 57.895 0.00 0.00 0.00 3.85
20 21 2.026014 GCAACCACCACAGCAACG 59.974 61.111 0.00 0.00 0.00 4.10
21 22 1.515020 TTGCAACCACCACAGCAAC 59.485 52.632 0.00 0.00 41.55 4.17
22 23 1.253593 TGTTGCAACCACCACAGCAA 61.254 50.000 26.14 0.76 43.90 3.91
23 24 1.680314 TGTTGCAACCACCACAGCA 60.680 52.632 26.14 1.62 34.79 4.41
24 25 1.226945 GTGTTGCAACCACCACAGC 60.227 57.895 26.14 0.00 34.81 4.40
25 26 1.437160 GGTGTTGCAACCACCACAG 59.563 57.895 30.14 0.00 36.22 3.66
26 27 2.410687 CGGTGTTGCAACCACCACA 61.411 57.895 31.99 14.85 40.53 4.17
27 28 2.411290 CGGTGTTGCAACCACCAC 59.589 61.111 31.99 22.75 40.53 4.16
28 29 2.632602 ATCCGGTGTTGCAACCACCA 62.633 55.000 31.99 22.19 40.53 4.17
29 30 1.460273 AATCCGGTGTTGCAACCACC 61.460 55.000 27.55 27.55 40.53 4.61
30 31 0.039527 GAATCCGGTGTTGCAACCAC 60.040 55.000 26.14 21.52 40.53 4.16
31 32 0.179004 AGAATCCGGTGTTGCAACCA 60.179 50.000 26.14 11.92 40.53 3.67
32 33 0.521735 GAGAATCCGGTGTTGCAACC 59.478 55.000 26.14 16.80 36.82 3.77
45 46 5.397326 GTTGAAGCAACATGAAGGAGAATC 58.603 41.667 0.00 0.00 43.09 2.52
46 47 4.219288 GGTTGAAGCAACATGAAGGAGAAT 59.781 41.667 11.83 0.00 45.11 2.40
47 48 3.569701 GGTTGAAGCAACATGAAGGAGAA 59.430 43.478 11.83 0.00 45.11 2.87
48 49 3.149196 GGTTGAAGCAACATGAAGGAGA 58.851 45.455 11.83 0.00 45.11 3.71
49 50 2.886523 TGGTTGAAGCAACATGAAGGAG 59.113 45.455 11.83 0.00 45.11 3.69
50 51 2.942804 TGGTTGAAGCAACATGAAGGA 58.057 42.857 11.83 0.00 45.11 3.36
51 52 3.581755 CATGGTTGAAGCAACATGAAGG 58.418 45.455 11.83 0.00 45.11 3.46
52 53 3.581755 CCATGGTTGAAGCAACATGAAG 58.418 45.455 2.57 0.00 45.11 3.02
53 54 2.288948 GCCATGGTTGAAGCAACATGAA 60.289 45.455 14.67 0.00 45.11 2.57
54 55 1.273048 GCCATGGTTGAAGCAACATGA 59.727 47.619 14.67 0.00 45.11 3.07
55 56 1.673626 GGCCATGGTTGAAGCAACATG 60.674 52.381 14.67 11.90 45.11 3.21
56 57 0.609662 GGCCATGGTTGAAGCAACAT 59.390 50.000 14.67 2.14 45.11 2.71
57 58 1.804396 CGGCCATGGTTGAAGCAACA 61.804 55.000 14.67 0.04 45.11 3.33
58 59 1.080569 CGGCCATGGTTGAAGCAAC 60.081 57.895 14.67 1.82 42.89 4.17
59 60 2.929903 GCGGCCATGGTTGAAGCAA 61.930 57.895 14.67 0.00 0.00 3.91
60 61 3.372730 GCGGCCATGGTTGAAGCA 61.373 61.111 14.67 0.00 0.00 3.91
61 62 2.639327 AAGCGGCCATGGTTGAAGC 61.639 57.895 14.67 11.69 0.00 3.86
62 63 3.685435 AAGCGGCCATGGTTGAAG 58.315 55.556 14.67 1.77 0.00 3.02
77 78 0.947244 AGTTTCTCAGTTGCGGCAAG 59.053 50.000 16.97 5.59 0.00 4.01
78 79 1.388547 AAGTTTCTCAGTTGCGGCAA 58.611 45.000 12.11 12.11 0.00 4.52
79 80 1.065401 CAAAGTTTCTCAGTTGCGGCA 59.935 47.619 0.00 0.00 0.00 5.69
80 81 1.758783 CAAAGTTTCTCAGTTGCGGC 58.241 50.000 0.00 0.00 0.00 6.53
81 82 1.758783 GCAAAGTTTCTCAGTTGCGG 58.241 50.000 0.00 0.00 37.25 5.69
83 84 2.122564 GCTGCAAAGTTTCTCAGTTGC 58.877 47.619 13.10 0.40 45.19 4.17
84 85 3.549625 GGAGCTGCAAAGTTTCTCAGTTG 60.550 47.826 0.00 0.00 0.00 3.16
85 86 2.620585 GGAGCTGCAAAGTTTCTCAGTT 59.379 45.455 0.00 8.93 0.00 3.16
86 87 2.225467 GGAGCTGCAAAGTTTCTCAGT 58.775 47.619 0.00 4.02 0.00 3.41
87 88 1.538950 GGGAGCTGCAAAGTTTCTCAG 59.461 52.381 7.79 9.10 0.00 3.35
88 89 1.609208 GGGAGCTGCAAAGTTTCTCA 58.391 50.000 7.79 0.00 0.00 3.27
89 90 0.884514 GGGGAGCTGCAAAGTTTCTC 59.115 55.000 7.79 0.00 0.00 2.87
90 91 0.890996 CGGGGAGCTGCAAAGTTTCT 60.891 55.000 7.79 0.00 0.00 2.52
91 92 1.581447 CGGGGAGCTGCAAAGTTTC 59.419 57.895 7.79 0.00 0.00 2.78
92 93 1.903404 CCGGGGAGCTGCAAAGTTT 60.903 57.895 7.79 0.00 0.00 2.66
93 94 2.282462 CCGGGGAGCTGCAAAGTT 60.282 61.111 7.79 0.00 0.00 2.66
94 95 2.142292 ATTCCGGGGAGCTGCAAAGT 62.142 55.000 7.79 0.00 0.00 2.66
95 96 0.967380 AATTCCGGGGAGCTGCAAAG 60.967 55.000 7.79 0.00 0.00 2.77
96 97 1.076549 AATTCCGGGGAGCTGCAAA 59.923 52.632 7.79 0.00 0.00 3.68
97 98 1.678635 CAATTCCGGGGAGCTGCAA 60.679 57.895 7.79 0.00 0.00 4.08
98 99 2.045045 CAATTCCGGGGAGCTGCA 60.045 61.111 7.79 0.00 0.00 4.41
99 100 1.821332 CTCAATTCCGGGGAGCTGC 60.821 63.158 0.00 0.00 0.00 5.25
100 101 1.153086 CCTCAATTCCGGGGAGCTG 60.153 63.158 0.00 0.00 0.00 4.24
101 102 1.208165 AACCTCAATTCCGGGGAGCT 61.208 55.000 0.00 0.00 0.00 4.09
102 103 1.032114 CAACCTCAATTCCGGGGAGC 61.032 60.000 0.00 0.00 0.00 4.70
103 104 1.032114 GCAACCTCAATTCCGGGGAG 61.032 60.000 0.00 3.95 0.00 4.30
104 105 1.001393 GCAACCTCAATTCCGGGGA 60.001 57.895 0.00 0.00 0.00 4.81
105 106 0.897863 TTGCAACCTCAATTCCGGGG 60.898 55.000 0.00 0.00 0.00 5.73
106 107 0.243636 GTTGCAACCTCAATTCCGGG 59.756 55.000 19.15 0.00 0.00 5.73
107 108 1.200020 GAGTTGCAACCTCAATTCCGG 59.800 52.381 25.62 0.00 29.68 5.14
108 109 1.200020 GGAGTTGCAACCTCAATTCCG 59.800 52.381 25.62 0.00 41.07 4.30
109 110 1.546029 GGGAGTTGCAACCTCAATTCC 59.454 52.381 25.62 22.28 46.16 3.01
110 111 2.229784 CAGGGAGTTGCAACCTCAATTC 59.770 50.000 25.62 14.93 33.56 2.17
111 112 2.242043 CAGGGAGTTGCAACCTCAATT 58.758 47.619 25.62 6.19 30.66 2.32
112 113 1.915141 CAGGGAGTTGCAACCTCAAT 58.085 50.000 25.62 7.00 30.66 2.57
113 114 0.823356 GCAGGGAGTTGCAACCTCAA 60.823 55.000 25.62 0.00 43.53 3.02
114 115 1.228245 GCAGGGAGTTGCAACCTCA 60.228 57.895 25.62 0.00 43.53 3.86
115 116 2.328099 CGCAGGGAGTTGCAACCTC 61.328 63.158 25.62 20.08 44.28 3.85
116 117 2.281761 CGCAGGGAGTTGCAACCT 60.282 61.111 25.62 13.53 44.28 3.50
133 134 4.043200 GAAGCTGCAACCGCACCC 62.043 66.667 1.02 0.00 45.36 4.61
134 135 2.555547 AAGAAGCTGCAACCGCACC 61.556 57.895 1.02 0.00 45.36 5.01
135 136 1.370900 CAAGAAGCTGCAACCGCAC 60.371 57.895 1.02 0.00 45.36 5.34
137 138 2.429739 GCAAGAAGCTGCAACCGC 60.430 61.111 1.02 0.00 42.17 5.68
146 147 0.933796 GCGTCCATCTAGCAAGAAGC 59.066 55.000 0.00 0.00 46.19 3.86
147 148 2.299993 TGCGTCCATCTAGCAAGAAG 57.700 50.000 0.00 0.00 38.01 2.85
148 149 2.760634 TTGCGTCCATCTAGCAAGAA 57.239 45.000 0.00 0.00 45.56 2.52
149 150 2.988010 ATTGCGTCCATCTAGCAAGA 57.012 45.000 8.08 0.00 45.56 3.02
150 151 3.681897 GGATATTGCGTCCATCTAGCAAG 59.318 47.826 8.08 0.00 45.56 4.01
151 152 3.664107 GGATATTGCGTCCATCTAGCAA 58.336 45.455 4.56 4.56 45.56 3.91
152 153 2.352715 CGGATATTGCGTCCATCTAGCA 60.353 50.000 0.00 0.00 39.33 3.49
153 154 2.263077 CGGATATTGCGTCCATCTAGC 58.737 52.381 0.00 0.00 35.41 3.42
154 155 2.231478 ACCGGATATTGCGTCCATCTAG 59.769 50.000 9.46 0.00 35.41 2.43
155 156 2.244695 ACCGGATATTGCGTCCATCTA 58.755 47.619 9.46 0.00 35.41 1.98
156 157 1.048601 ACCGGATATTGCGTCCATCT 58.951 50.000 9.46 0.00 35.41 2.90
157 158 1.878953 AACCGGATATTGCGTCCATC 58.121 50.000 9.46 0.00 35.41 3.51
158 159 3.478857 TTAACCGGATATTGCGTCCAT 57.521 42.857 9.46 0.00 35.41 3.41
159 160 2.983907 TTAACCGGATATTGCGTCCA 57.016 45.000 9.46 0.00 35.41 4.02
160 161 4.609783 CGAAATTAACCGGATATTGCGTCC 60.610 45.833 9.46 0.00 0.00 4.79
161 162 4.025480 ACGAAATTAACCGGATATTGCGTC 60.025 41.667 20.45 7.58 38.77 5.19
162 163 3.872771 ACGAAATTAACCGGATATTGCGT 59.127 39.130 20.45 20.45 38.39 5.24
163 164 4.461992 ACGAAATTAACCGGATATTGCG 57.538 40.909 9.46 16.57 36.59 4.85
164 165 5.454232 CACAACGAAATTAACCGGATATTGC 59.546 40.000 9.46 2.00 0.00 3.56
165 166 5.454232 GCACAACGAAATTAACCGGATATTG 59.546 40.000 9.46 3.55 0.00 1.90
166 167 5.124138 TGCACAACGAAATTAACCGGATATT 59.876 36.000 9.46 1.04 0.00 1.28
167 168 4.636648 TGCACAACGAAATTAACCGGATAT 59.363 37.500 9.46 0.00 0.00 1.63
168 169 4.001652 TGCACAACGAAATTAACCGGATA 58.998 39.130 9.46 0.00 0.00 2.59
169 170 2.814919 TGCACAACGAAATTAACCGGAT 59.185 40.909 9.46 0.00 0.00 4.18
170 171 2.031857 GTGCACAACGAAATTAACCGGA 60.032 45.455 13.17 0.00 0.00 5.14
171 172 2.312348 GTGCACAACGAAATTAACCGG 58.688 47.619 13.17 0.00 0.00 5.28
172 173 2.287069 TGGTGCACAACGAAATTAACCG 60.287 45.455 20.43 0.00 0.00 4.44
173 174 3.305110 CTGGTGCACAACGAAATTAACC 58.695 45.455 20.43 0.00 0.00 2.85
174 175 3.243267 ACCTGGTGCACAACGAAATTAAC 60.243 43.478 20.43 0.00 0.00 2.01
175 176 2.952978 ACCTGGTGCACAACGAAATTAA 59.047 40.909 20.43 0.00 0.00 1.40
176 177 2.292016 CACCTGGTGCACAACGAAATTA 59.708 45.455 20.43 0.00 0.00 1.40
177 178 1.066908 CACCTGGTGCACAACGAAATT 59.933 47.619 20.43 0.00 0.00 1.82
178 179 0.667993 CACCTGGTGCACAACGAAAT 59.332 50.000 20.43 0.00 0.00 2.17
179 180 1.380403 CCACCTGGTGCACAACGAAA 61.380 55.000 21.47 0.00 31.34 3.46
180 181 1.821759 CCACCTGGTGCACAACGAA 60.822 57.895 21.47 0.00 31.34 3.85
181 182 2.050836 ATCCACCTGGTGCACAACGA 62.051 55.000 21.47 12.03 36.34 3.85
182 183 1.172180 AATCCACCTGGTGCACAACG 61.172 55.000 21.47 3.63 36.34 4.10
183 184 1.039856 AAATCCACCTGGTGCACAAC 58.960 50.000 21.47 2.20 36.34 3.32
184 185 1.039068 CAAATCCACCTGGTGCACAA 58.961 50.000 21.47 6.43 36.34 3.33
185 186 0.184692 TCAAATCCACCTGGTGCACA 59.815 50.000 21.47 7.52 36.34 4.57
186 187 0.883833 CTCAAATCCACCTGGTGCAC 59.116 55.000 21.47 8.80 36.34 4.57
187 188 0.251297 CCTCAAATCCACCTGGTGCA 60.251 55.000 21.47 7.21 36.34 4.57
188 189 0.967380 CCCTCAAATCCACCTGGTGC 60.967 60.000 21.47 0.00 36.34 5.01
189 190 0.698238 TCCCTCAAATCCACCTGGTG 59.302 55.000 20.01 20.01 36.34 4.17
190 191 0.995024 CTCCCTCAAATCCACCTGGT 59.005 55.000 0.00 0.00 36.34 4.00
191 192 0.257039 CCTCCCTCAAATCCACCTGG 59.743 60.000 0.00 0.00 0.00 4.45
192 193 0.394899 GCCTCCCTCAAATCCACCTG 60.395 60.000 0.00 0.00 0.00 4.00
193 194 1.915078 CGCCTCCCTCAAATCCACCT 61.915 60.000 0.00 0.00 0.00 4.00
194 195 1.452108 CGCCTCCCTCAAATCCACC 60.452 63.158 0.00 0.00 0.00 4.61
195 196 2.115291 GCGCCTCCCTCAAATCCAC 61.115 63.158 0.00 0.00 0.00 4.02
196 197 2.272146 GCGCCTCCCTCAAATCCA 59.728 61.111 0.00 0.00 0.00 3.41
197 198 2.517166 GGCGCCTCCCTCAAATCC 60.517 66.667 22.15 0.00 0.00 3.01
198 199 1.821332 CTGGCGCCTCCCTCAAATC 60.821 63.158 29.70 0.00 0.00 2.17
199 200 2.273449 CTGGCGCCTCCCTCAAAT 59.727 61.111 29.70 0.00 0.00 2.32
200 201 3.249189 ACTGGCGCCTCCCTCAAA 61.249 61.111 29.70 2.78 0.00 2.69
201 202 4.020617 CACTGGCGCCTCCCTCAA 62.021 66.667 29.70 3.67 0.00 3.02
213 214 3.673484 CGTTGCCCTTGCCACTGG 61.673 66.667 0.00 0.00 36.33 4.00
214 215 3.673484 CCGTTGCCCTTGCCACTG 61.673 66.667 0.00 0.00 36.33 3.66
215 216 4.204028 ACCGTTGCCCTTGCCACT 62.204 61.111 0.00 0.00 36.33 4.00
216 217 3.977244 CACCGTTGCCCTTGCCAC 61.977 66.667 0.00 0.00 36.33 5.01
219 220 3.977244 CACCACCGTTGCCCTTGC 61.977 66.667 0.00 0.00 38.26 4.01
220 221 3.294493 CCACCACCGTTGCCCTTG 61.294 66.667 0.00 0.00 0.00 3.61
221 222 3.785122 GACCACCACCGTTGCCCTT 62.785 63.158 0.00 0.00 0.00 3.95
222 223 4.265056 GACCACCACCGTTGCCCT 62.265 66.667 0.00 0.00 0.00 5.19
224 225 4.922026 ACGACCACCACCGTTGCC 62.922 66.667 0.00 0.00 35.21 4.52
225 226 2.898343 AACGACCACCACCGTTGC 60.898 61.111 0.00 0.00 45.73 4.17
228 229 2.107546 GACAACGACCACCACCGT 59.892 61.111 0.00 0.00 41.14 4.83
229 230 1.954146 CAGACAACGACCACCACCG 60.954 63.158 0.00 0.00 0.00 4.94
230 231 2.251642 GCAGACAACGACCACCACC 61.252 63.158 0.00 0.00 0.00 4.61
231 232 1.227556 AGCAGACAACGACCACCAC 60.228 57.895 0.00 0.00 0.00 4.16
232 233 1.227527 CAGCAGACAACGACCACCA 60.228 57.895 0.00 0.00 0.00 4.17
233 234 1.961277 CCAGCAGACAACGACCACC 60.961 63.158 0.00 0.00 0.00 4.61
234 235 0.320771 ATCCAGCAGACAACGACCAC 60.321 55.000 0.00 0.00 0.00 4.16
235 236 0.320683 CATCCAGCAGACAACGACCA 60.321 55.000 0.00 0.00 0.00 4.02
236 237 1.021390 CCATCCAGCAGACAACGACC 61.021 60.000 0.00 0.00 0.00 4.79
237 238 0.037326 TCCATCCAGCAGACAACGAC 60.037 55.000 0.00 0.00 0.00 4.34
238 239 0.684535 TTCCATCCAGCAGACAACGA 59.315 50.000 0.00 0.00 0.00 3.85
239 240 1.522668 TTTCCATCCAGCAGACAACG 58.477 50.000 0.00 0.00 0.00 4.10
240 241 3.084039 TCATTTCCATCCAGCAGACAAC 58.916 45.455 0.00 0.00 0.00 3.32
241 242 3.084039 GTCATTTCCATCCAGCAGACAA 58.916 45.455 0.00 0.00 0.00 3.18
242 243 2.715046 GTCATTTCCATCCAGCAGACA 58.285 47.619 0.00 0.00 0.00 3.41
243 244 1.667724 CGTCATTTCCATCCAGCAGAC 59.332 52.381 0.00 0.00 0.00 3.51
244 245 1.407299 CCGTCATTTCCATCCAGCAGA 60.407 52.381 0.00 0.00 0.00 4.26
245 246 1.019673 CCGTCATTTCCATCCAGCAG 58.980 55.000 0.00 0.00 0.00 4.24
246 247 0.617935 TCCGTCATTTCCATCCAGCA 59.382 50.000 0.00 0.00 0.00 4.41
247 248 1.134401 TCTCCGTCATTTCCATCCAGC 60.134 52.381 0.00 0.00 0.00 4.85
248 249 2.988010 TCTCCGTCATTTCCATCCAG 57.012 50.000 0.00 0.00 0.00 3.86
249 250 2.771372 TCATCTCCGTCATTTCCATCCA 59.229 45.455 0.00 0.00 0.00 3.41
250 251 3.070159 TCTCATCTCCGTCATTTCCATCC 59.930 47.826 0.00 0.00 0.00 3.51
251 252 4.327982 TCTCATCTCCGTCATTTCCATC 57.672 45.455 0.00 0.00 0.00 3.51
252 253 4.406972 TCTTCTCATCTCCGTCATTTCCAT 59.593 41.667 0.00 0.00 0.00 3.41
253 254 3.769300 TCTTCTCATCTCCGTCATTTCCA 59.231 43.478 0.00 0.00 0.00 3.53
254 255 4.116238 GTCTTCTCATCTCCGTCATTTCC 58.884 47.826 0.00 0.00 0.00 3.13
255 256 3.794028 CGTCTTCTCATCTCCGTCATTTC 59.206 47.826 0.00 0.00 0.00 2.17
256 257 3.444034 TCGTCTTCTCATCTCCGTCATTT 59.556 43.478 0.00 0.00 0.00 2.32
257 258 3.017442 TCGTCTTCTCATCTCCGTCATT 58.983 45.455 0.00 0.00 0.00 2.57
258 259 2.644676 TCGTCTTCTCATCTCCGTCAT 58.355 47.619 0.00 0.00 0.00 3.06
259 260 2.109425 TCGTCTTCTCATCTCCGTCA 57.891 50.000 0.00 0.00 0.00 4.35
260 261 2.287308 CCATCGTCTTCTCATCTCCGTC 60.287 54.545 0.00 0.00 0.00 4.79
261 262 1.678627 CCATCGTCTTCTCATCTCCGT 59.321 52.381 0.00 0.00 0.00 4.69
262 263 1.000827 CCCATCGTCTTCTCATCTCCG 60.001 57.143 0.00 0.00 0.00 4.63
263 264 1.342819 CCCCATCGTCTTCTCATCTCC 59.657 57.143 0.00 0.00 0.00 3.71
264 265 2.311463 TCCCCATCGTCTTCTCATCTC 58.689 52.381 0.00 0.00 0.00 2.75
265 266 2.461300 TCCCCATCGTCTTCTCATCT 57.539 50.000 0.00 0.00 0.00 2.90
266 267 2.630098 TCATCCCCATCGTCTTCTCATC 59.370 50.000 0.00 0.00 0.00 2.92
267 268 2.632028 CTCATCCCCATCGTCTTCTCAT 59.368 50.000 0.00 0.00 0.00 2.90
268 269 2.034878 CTCATCCCCATCGTCTTCTCA 58.965 52.381 0.00 0.00 0.00 3.27
269 270 2.311463 TCTCATCCCCATCGTCTTCTC 58.689 52.381 0.00 0.00 0.00 2.87
270 271 2.432510 GTTCTCATCCCCATCGTCTTCT 59.567 50.000 0.00 0.00 0.00 2.85
271 272 2.799917 CGTTCTCATCCCCATCGTCTTC 60.800 54.545 0.00 0.00 0.00 2.87
272 273 1.137086 CGTTCTCATCCCCATCGTCTT 59.863 52.381 0.00 0.00 0.00 3.01
273 274 0.747255 CGTTCTCATCCCCATCGTCT 59.253 55.000 0.00 0.00 0.00 4.18
274 275 0.744874 TCGTTCTCATCCCCATCGTC 59.255 55.000 0.00 0.00 0.00 4.20
275 276 0.747255 CTCGTTCTCATCCCCATCGT 59.253 55.000 0.00 0.00 0.00 3.73
276 277 0.747255 ACTCGTTCTCATCCCCATCG 59.253 55.000 0.00 0.00 0.00 3.84
277 278 1.757118 TCACTCGTTCTCATCCCCATC 59.243 52.381 0.00 0.00 0.00 3.51
278 279 1.866015 TCACTCGTTCTCATCCCCAT 58.134 50.000 0.00 0.00 0.00 4.00
279 280 1.639722 TTCACTCGTTCTCATCCCCA 58.360 50.000 0.00 0.00 0.00 4.96
280 281 2.762535 TTTCACTCGTTCTCATCCCC 57.237 50.000 0.00 0.00 0.00 4.81
281 282 3.003480 CCTTTTCACTCGTTCTCATCCC 58.997 50.000 0.00 0.00 0.00 3.85
282 283 3.003480 CCCTTTTCACTCGTTCTCATCC 58.997 50.000 0.00 0.00 0.00 3.51
283 284 2.416893 GCCCTTTTCACTCGTTCTCATC 59.583 50.000 0.00 0.00 0.00 2.92
284 285 2.039084 AGCCCTTTTCACTCGTTCTCAT 59.961 45.455 0.00 0.00 0.00 2.90
285 286 1.416401 AGCCCTTTTCACTCGTTCTCA 59.584 47.619 0.00 0.00 0.00 3.27
286 287 1.801178 CAGCCCTTTTCACTCGTTCTC 59.199 52.381 0.00 0.00 0.00 2.87
287 288 1.543429 CCAGCCCTTTTCACTCGTTCT 60.543 52.381 0.00 0.00 0.00 3.01
288 289 0.875059 CCAGCCCTTTTCACTCGTTC 59.125 55.000 0.00 0.00 0.00 3.95
289 290 0.472471 TCCAGCCCTTTTCACTCGTT 59.528 50.000 0.00 0.00 0.00 3.85
290 291 0.035458 CTCCAGCCCTTTTCACTCGT 59.965 55.000 0.00 0.00 0.00 4.18
291 292 0.321671 TCTCCAGCCCTTTTCACTCG 59.678 55.000 0.00 0.00 0.00 4.18
292 293 1.625818 TCTCTCCAGCCCTTTTCACTC 59.374 52.381 0.00 0.00 0.00 3.51
293 294 1.734655 TCTCTCCAGCCCTTTTCACT 58.265 50.000 0.00 0.00 0.00 3.41
294 295 2.568623 TTCTCTCCAGCCCTTTTCAC 57.431 50.000 0.00 0.00 0.00 3.18
295 296 2.711009 TCTTTCTCTCCAGCCCTTTTCA 59.289 45.455 0.00 0.00 0.00 2.69
296 297 3.008485 TCTCTTTCTCTCCAGCCCTTTTC 59.992 47.826 0.00 0.00 0.00 2.29
297 298 2.982488 TCTCTTTCTCTCCAGCCCTTTT 59.018 45.455 0.00 0.00 0.00 2.27
298 299 2.625639 TCTCTTTCTCTCCAGCCCTTT 58.374 47.619 0.00 0.00 0.00 3.11
299 300 2.334006 TCTCTTTCTCTCCAGCCCTT 57.666 50.000 0.00 0.00 0.00 3.95
300 301 2.566708 ATCTCTTTCTCTCCAGCCCT 57.433 50.000 0.00 0.00 0.00 5.19
301 302 3.070878 CCTTATCTCTTTCTCTCCAGCCC 59.929 52.174 0.00 0.00 0.00 5.19
302 303 3.709141 ACCTTATCTCTTTCTCTCCAGCC 59.291 47.826 0.00 0.00 0.00 4.85
303 304 4.404073 TGACCTTATCTCTTTCTCTCCAGC 59.596 45.833 0.00 0.00 0.00 4.85
304 305 6.406849 CCTTGACCTTATCTCTTTCTCTCCAG 60.407 46.154 0.00 0.00 0.00 3.86
305 306 5.423610 CCTTGACCTTATCTCTTTCTCTCCA 59.576 44.000 0.00 0.00 0.00 3.86
306 307 5.683770 GCCTTGACCTTATCTCTTTCTCTCC 60.684 48.000 0.00 0.00 0.00 3.71
307 308 5.105146 TGCCTTGACCTTATCTCTTTCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
308 309 4.780021 TGCCTTGACCTTATCTCTTTCTCT 59.220 41.667 0.00 0.00 0.00 3.10
309 310 5.091261 TGCCTTGACCTTATCTCTTTCTC 57.909 43.478 0.00 0.00 0.00 2.87
310 311 4.780021 TCTGCCTTGACCTTATCTCTTTCT 59.220 41.667 0.00 0.00 0.00 2.52
311 312 5.091261 TCTGCCTTGACCTTATCTCTTTC 57.909 43.478 0.00 0.00 0.00 2.62
312 313 5.505181 TTCTGCCTTGACCTTATCTCTTT 57.495 39.130 0.00 0.00 0.00 2.52
313 314 5.505181 TTTCTGCCTTGACCTTATCTCTT 57.495 39.130 0.00 0.00 0.00 2.85
314 315 5.505181 TTTTCTGCCTTGACCTTATCTCT 57.495 39.130 0.00 0.00 0.00 3.10
315 316 5.392487 GCTTTTTCTGCCTTGACCTTATCTC 60.392 44.000 0.00 0.00 0.00 2.75
316 317 4.460731 GCTTTTTCTGCCTTGACCTTATCT 59.539 41.667 0.00 0.00 0.00 1.98
317 318 4.672801 CGCTTTTTCTGCCTTGACCTTATC 60.673 45.833 0.00 0.00 0.00 1.75
318 319 3.191371 CGCTTTTTCTGCCTTGACCTTAT 59.809 43.478 0.00 0.00 0.00 1.73
319 320 2.552315 CGCTTTTTCTGCCTTGACCTTA 59.448 45.455 0.00 0.00 0.00 2.69
320 321 1.338020 CGCTTTTTCTGCCTTGACCTT 59.662 47.619 0.00 0.00 0.00 3.50
321 322 0.954452 CGCTTTTTCTGCCTTGACCT 59.046 50.000 0.00 0.00 0.00 3.85
322 323 0.039165 CCGCTTTTTCTGCCTTGACC 60.039 55.000 0.00 0.00 0.00 4.02
323 324 0.668535 ACCGCTTTTTCTGCCTTGAC 59.331 50.000 0.00 0.00 0.00 3.18
324 325 0.951558 GACCGCTTTTTCTGCCTTGA 59.048 50.000 0.00 0.00 0.00 3.02
325 326 0.385974 CGACCGCTTTTTCTGCCTTG 60.386 55.000 0.00 0.00 0.00 3.61
326 327 0.534203 TCGACCGCTTTTTCTGCCTT 60.534 50.000 0.00 0.00 0.00 4.35
327 328 0.951040 CTCGACCGCTTTTTCTGCCT 60.951 55.000 0.00 0.00 0.00 4.75
328 329 1.497722 CTCGACCGCTTTTTCTGCC 59.502 57.895 0.00 0.00 0.00 4.85
329 330 1.154395 GCTCGACCGCTTTTTCTGC 60.154 57.895 0.00 0.00 0.00 4.26
330 331 1.130613 CGCTCGACCGCTTTTTCTG 59.869 57.895 0.00 0.00 0.00 3.02
331 332 2.027625 CCGCTCGACCGCTTTTTCT 61.028 57.895 0.00 0.00 0.00 2.52
332 333 2.474712 CCGCTCGACCGCTTTTTC 59.525 61.111 0.00 0.00 0.00 2.29
333 334 3.047877 CCCGCTCGACCGCTTTTT 61.048 61.111 0.00 0.00 0.00 1.94
334 335 4.309950 ACCCGCTCGACCGCTTTT 62.310 61.111 0.00 0.00 0.00 2.27
335 336 4.736896 GACCCGCTCGACCGCTTT 62.737 66.667 0.00 0.00 0.00 3.51
340 341 3.998672 TTGTGGACCCGCTCGACC 61.999 66.667 1.01 0.00 0.00 4.79
341 342 2.737376 GTTGTGGACCCGCTCGAC 60.737 66.667 1.01 0.00 0.00 4.20
342 343 3.228017 TGTTGTGGACCCGCTCGA 61.228 61.111 1.01 0.00 0.00 4.04
343 344 3.041940 GTGTTGTGGACCCGCTCG 61.042 66.667 1.01 0.00 0.00 5.03
344 345 3.041940 CGTGTTGTGGACCCGCTC 61.042 66.667 1.01 0.00 0.00 5.03
345 346 3.857038 ACGTGTTGTGGACCCGCT 61.857 61.111 1.01 0.00 31.97 5.52
346 347 3.645975 CACGTGTTGTGGACCCGC 61.646 66.667 7.58 0.00 45.21 6.13
368 369 2.737376 GTGAAGTCCGTCCCGCAC 60.737 66.667 0.00 0.00 0.00 5.34
369 370 4.351938 CGTGAAGTCCGTCCCGCA 62.352 66.667 0.00 0.00 0.00 5.69
370 371 4.353437 ACGTGAAGTCCGTCCCGC 62.353 66.667 0.00 0.00 31.97 6.13
371 372 2.430244 CACGTGAAGTCCGTCCCG 60.430 66.667 10.90 0.00 36.17 5.14
372 373 2.737376 GCACGTGAAGTCCGTCCC 60.737 66.667 22.23 0.00 36.17 4.46
373 374 2.028484 TGCACGTGAAGTCCGTCC 59.972 61.111 22.23 0.00 36.17 4.79
374 375 1.548973 CTGTGCACGTGAAGTCCGTC 61.549 60.000 22.23 0.00 36.17 4.79
375 376 1.591594 CTGTGCACGTGAAGTCCGT 60.592 57.895 22.23 0.00 39.52 4.69
376 377 2.310233 CCTGTGCACGTGAAGTCCG 61.310 63.158 22.23 1.32 0.00 4.79
377 378 0.531974 TTCCTGTGCACGTGAAGTCC 60.532 55.000 22.23 0.69 0.00 3.85
378 379 1.003866 GTTTCCTGTGCACGTGAAGTC 60.004 52.381 22.23 1.13 0.00 3.01
379 380 1.014352 GTTTCCTGTGCACGTGAAGT 58.986 50.000 22.23 0.00 0.00 3.01
380 381 1.003545 CTGTTTCCTGTGCACGTGAAG 60.004 52.381 22.23 12.79 0.00 3.02
381 382 1.013596 CTGTTTCCTGTGCACGTGAA 58.986 50.000 22.23 5.66 0.00 3.18
382 383 0.813610 CCTGTTTCCTGTGCACGTGA 60.814 55.000 22.23 8.24 0.00 4.35
383 384 1.648720 CCTGTTTCCTGTGCACGTG 59.351 57.895 12.28 12.28 0.00 4.49
384 385 2.186826 GCCTGTTTCCTGTGCACGT 61.187 57.895 13.13 0.00 0.00 4.49
385 386 2.121564 CTGCCTGTTTCCTGTGCACG 62.122 60.000 13.13 7.03 0.00 5.34
386 387 1.656441 CTGCCTGTTTCCTGTGCAC 59.344 57.895 10.75 10.75 0.00 4.57
387 388 1.529010 CCTGCCTGTTTCCTGTGCA 60.529 57.895 0.00 0.00 0.00 4.57
388 389 2.270986 CCCTGCCTGTTTCCTGTGC 61.271 63.158 0.00 0.00 0.00 4.57
389 390 1.604593 CCCCTGCCTGTTTCCTGTG 60.605 63.158 0.00 0.00 0.00 3.66
390 391 2.846532 CCCCTGCCTGTTTCCTGT 59.153 61.111 0.00 0.00 0.00 4.00
391 392 2.677875 GCCCCTGCCTGTTTCCTG 60.678 66.667 0.00 0.00 0.00 3.86
422 423 3.793144 CTTTCAGCCGGCTCGTGC 61.793 66.667 30.29 0.00 38.76 5.34
423 424 1.901650 GAACTTTCAGCCGGCTCGTG 61.902 60.000 30.29 17.91 0.00 4.35
424 425 1.668151 GAACTTTCAGCCGGCTCGT 60.668 57.895 30.29 18.33 0.00 4.18
425 426 2.730672 CGAACTTTCAGCCGGCTCG 61.731 63.158 30.29 21.96 0.00 5.03
426 427 2.391389 CCGAACTTTCAGCCGGCTC 61.391 63.158 30.29 13.28 35.29 4.70
427 428 2.358737 CCGAACTTTCAGCCGGCT 60.359 61.111 27.08 27.08 35.29 5.52
429 430 3.431725 GGCCGAACTTTCAGCCGG 61.432 66.667 0.00 0.00 40.58 6.13
431 432 3.431725 CCGGCCGAACTTTCAGCC 61.432 66.667 30.73 6.19 45.24 4.85
432 433 4.103103 GCCGGCCGAACTTTCAGC 62.103 66.667 30.73 15.52 0.00 4.26
433 434 3.788766 CGCCGGCCGAACTTTCAG 61.789 66.667 30.73 8.26 40.02 3.02
452 453 0.796870 GGTAAATGCTTGCGTTCGGC 60.797 55.000 0.24 0.00 43.96 5.54
453 454 0.519519 TGGTAAATGCTTGCGTTCGG 59.480 50.000 0.24 0.00 0.00 4.30
454 455 2.542766 ATGGTAAATGCTTGCGTTCG 57.457 45.000 0.24 0.00 0.00 3.95
455 456 5.176590 TGAAAAATGGTAAATGCTTGCGTTC 59.823 36.000 0.24 0.00 0.00 3.95
456 457 5.053145 TGAAAAATGGTAAATGCTTGCGTT 58.947 33.333 0.00 0.00 0.00 4.84
457 458 4.626042 TGAAAAATGGTAAATGCTTGCGT 58.374 34.783 0.00 0.00 0.00 5.24
458 459 5.588568 TTGAAAAATGGTAAATGCTTGCG 57.411 34.783 0.00 0.00 0.00 4.85
459 460 6.316319 CCATTGAAAAATGGTAAATGCTTGC 58.684 36.000 8.96 0.00 43.64 4.01
460 461 6.127952 CCCCATTGAAAAATGGTAAATGCTTG 60.128 38.462 14.66 0.00 46.45 4.01
461 462 5.945191 CCCCATTGAAAAATGGTAAATGCTT 59.055 36.000 14.66 0.00 46.45 3.91
462 463 5.250313 TCCCCATTGAAAAATGGTAAATGCT 59.750 36.000 14.66 0.00 46.45 3.79
463 464 5.495640 TCCCCATTGAAAAATGGTAAATGC 58.504 37.500 14.66 0.00 46.45 3.56
464 465 7.992754 TTTCCCCATTGAAAAATGGTAAATG 57.007 32.000 14.66 1.49 46.45 2.32
465 466 9.599056 AAATTTCCCCATTGAAAAATGGTAAAT 57.401 25.926 14.66 15.12 46.45 1.40
466 467 8.854117 CAAATTTCCCCATTGAAAAATGGTAAA 58.146 29.630 14.66 13.90 46.45 2.01
467 468 8.220559 TCAAATTTCCCCATTGAAAAATGGTAA 58.779 29.630 14.66 7.33 46.45 2.85
468 469 7.749666 TCAAATTTCCCCATTGAAAAATGGTA 58.250 30.769 14.66 2.21 46.45 3.25
469 470 6.608922 TCAAATTTCCCCATTGAAAAATGGT 58.391 32.000 14.66 0.00 46.45 3.55
475 476 9.320295 ACTACTATTCAAATTTCCCCATTGAAA 57.680 29.630 4.51 0.00 43.79 2.69
476 477 8.893563 ACTACTATTCAAATTTCCCCATTGAA 57.106 30.769 3.02 3.02 44.44 2.69
477 478 7.282224 CGACTACTATTCAAATTTCCCCATTGA 59.718 37.037 0.00 0.00 0.00 2.57
478 479 7.067008 ACGACTACTATTCAAATTTCCCCATTG 59.933 37.037 0.00 0.00 0.00 2.82
479 480 7.116736 ACGACTACTATTCAAATTTCCCCATT 58.883 34.615 0.00 0.00 0.00 3.16
480 481 6.659824 ACGACTACTATTCAAATTTCCCCAT 58.340 36.000 0.00 0.00 0.00 4.00
481 482 6.057321 ACGACTACTATTCAAATTTCCCCA 57.943 37.500 0.00 0.00 0.00 4.96
482 483 7.270779 AGTACGACTACTATTCAAATTTCCCC 58.729 38.462 0.00 0.00 30.81 4.81
483 484 9.978044 ATAGTACGACTACTATTCAAATTTCCC 57.022 33.333 0.00 0.00 41.60 3.97
499 500 4.215827 CGAAGCCCAGAATATAGTACGACT 59.784 45.833 0.00 0.00 0.00 4.18
500 501 4.474113 CGAAGCCCAGAATATAGTACGAC 58.526 47.826 0.00 0.00 0.00 4.34
555 590 1.204146 GGGACAGTGAGATGGGCTTA 58.796 55.000 0.00 0.00 0.00 3.09
565 600 3.936203 GTGTGGCCGGGACAGTGA 61.936 66.667 0.58 0.00 0.00 3.41
566 601 4.248842 TGTGTGGCCGGGACAGTG 62.249 66.667 0.58 0.00 0.00 3.66
571 606 4.555709 GTGTGTGTGTGGCCGGGA 62.556 66.667 2.18 0.00 0.00 5.14
575 610 1.598130 GAGGAGTGTGTGTGTGGCC 60.598 63.158 0.00 0.00 0.00 5.36
587 622 1.979809 TCAGAGGAGAGGAGAGGAGT 58.020 55.000 0.00 0.00 0.00 3.85
588 623 3.600448 AATCAGAGGAGAGGAGAGGAG 57.400 52.381 0.00 0.00 0.00 3.69
589 624 3.012274 ACAAATCAGAGGAGAGGAGAGGA 59.988 47.826 0.00 0.00 0.00 3.71
590 625 3.373830 ACAAATCAGAGGAGAGGAGAGG 58.626 50.000 0.00 0.00 0.00 3.69
592 627 4.264128 TGAGACAAATCAGAGGAGAGGAGA 60.264 45.833 0.00 0.00 0.00 3.71
593 628 4.022603 TGAGACAAATCAGAGGAGAGGAG 58.977 47.826 0.00 0.00 0.00 3.69
594 629 4.053009 TGAGACAAATCAGAGGAGAGGA 57.947 45.455 0.00 0.00 0.00 3.71
1600 1653 2.813908 GTCGTCATGGCGGTGGAC 60.814 66.667 21.18 6.70 0.00 4.02
1633 1686 2.492090 GACGCTGGTCATCTCGCT 59.508 61.111 0.00 0.00 42.91 4.93
1698 1751 4.735132 CCTTCGACGCGGCAGGAA 62.735 66.667 14.85 7.54 32.13 3.36
1833 1886 4.080695 AGCATCTCATGAGCAACCTTAAGA 60.081 41.667 18.36 0.00 0.00 2.10
1878 1931 3.191162 TCAAAATCTCCATGGAAGCAACG 59.809 43.478 17.00 2.72 0.00 4.10
1931 1984 2.476854 GCAAATAACTCTGCTGCCTTCG 60.477 50.000 0.00 0.00 35.62 3.79
1945 1998 3.637229 TCCACCAAAAACTCGGCAAATAA 59.363 39.130 0.00 0.00 0.00 1.40
1947 2000 2.035632 TCCACCAAAAACTCGGCAAAT 58.964 42.857 0.00 0.00 0.00 2.32
1953 2006 0.109781 CCGCATCCACCAAAAACTCG 60.110 55.000 0.00 0.00 0.00 4.18
1976 2029 0.109132 GCAATCAAACCCTTCCTGCG 60.109 55.000 0.00 0.00 0.00 5.18
1979 2032 2.158325 TCCAAGCAATCAAACCCTTCCT 60.158 45.455 0.00 0.00 0.00 3.36
2113 2166 2.892852 CCTTCACCAAGCAATCCAGAAA 59.107 45.455 0.00 0.00 0.00 2.52
2128 2181 4.785453 CAGCCTCCCCGCCTTCAC 62.785 72.222 0.00 0.00 0.00 3.18
2141 2194 2.475466 CGGCACACATCATCCAGCC 61.475 63.158 0.00 0.00 38.73 4.85
2179 2232 0.689745 TCTGGTACAATCCCCTCCCG 60.690 60.000 0.00 0.00 38.70 5.14
2244 2297 2.254546 TGTTTGCATCAGAAGTCCGT 57.745 45.000 0.00 0.00 0.00 4.69
2356 2410 4.069232 CACAGCCTCGCCTTCCGA 62.069 66.667 0.00 0.00 45.15 4.55
2684 2915 5.299279 AGGGCATAATCAAAACAATACCTCG 59.701 40.000 0.00 0.00 0.00 4.63
2719 2950 6.871492 TGCAGACAACAAAATCGAGACTAATA 59.129 34.615 0.00 0.00 0.00 0.98
2728 2959 3.063670 TGTGTGCAGACAACAAAATCG 57.936 42.857 15.24 0.00 32.49 3.34
2814 3045 2.159841 ACGAACAAATCAGTGAATCGCG 60.160 45.455 0.00 0.00 35.95 5.87
2816 3047 3.679980 AGGACGAACAAATCAGTGAATCG 59.320 43.478 0.00 5.60 37.38 3.34
2888 3119 0.603707 GCTATATGCAGGCTTGGCGA 60.604 55.000 0.00 0.00 42.31 5.54
2983 3214 3.421844 ACCTGTTTTCTGATAACCCAGC 58.578 45.455 8.23 0.00 34.28 4.85
3127 3358 1.133025 GTGCAGTCAATACCCATGTGC 59.867 52.381 0.00 0.00 0.00 4.57
3173 3404 3.515383 TTGGGGAGGAGGAAGGCCA 62.515 63.158 5.01 0.00 36.29 5.36
3174 3405 2.614013 TTGGGGAGGAGGAAGGCC 60.614 66.667 0.00 0.00 0.00 5.19
3175 3406 3.002371 CTTGGGGAGGAGGAAGGC 58.998 66.667 0.00 0.00 0.00 4.35
3177 3408 0.911525 TGAGCTTGGGGAGGAGGAAG 60.912 60.000 0.00 0.00 0.00 3.46
3178 3409 0.475632 TTGAGCTTGGGGAGGAGGAA 60.476 55.000 0.00 0.00 0.00 3.36
3179 3410 1.160870 TTGAGCTTGGGGAGGAGGA 59.839 57.895 0.00 0.00 0.00 3.71
3180 3411 1.301293 GTTGAGCTTGGGGAGGAGG 59.699 63.158 0.00 0.00 0.00 4.30
3181 3412 0.322008 GTGTTGAGCTTGGGGAGGAG 60.322 60.000 0.00 0.00 0.00 3.69
3182 3413 1.761174 GTGTTGAGCTTGGGGAGGA 59.239 57.895 0.00 0.00 0.00 3.71
3183 3414 1.672356 CGTGTTGAGCTTGGGGAGG 60.672 63.158 0.00 0.00 0.00 4.30
3184 3415 1.071471 ACGTGTTGAGCTTGGGGAG 59.929 57.895 0.00 0.00 0.00 4.30
3185 3416 1.227823 CACGTGTTGAGCTTGGGGA 60.228 57.895 7.58 0.00 0.00 4.81
3186 3417 2.908073 GCACGTGTTGAGCTTGGGG 61.908 63.158 18.38 0.00 0.00 4.96
3187 3418 1.518056 ATGCACGTGTTGAGCTTGGG 61.518 55.000 18.38 0.00 34.96 4.12
3188 3419 0.110056 GATGCACGTGTTGAGCTTGG 60.110 55.000 18.38 0.00 34.96 3.61
3189 3420 0.870393 AGATGCACGTGTTGAGCTTG 59.130 50.000 18.38 0.00 34.96 4.01
3190 3421 2.341257 CTAGATGCACGTGTTGAGCTT 58.659 47.619 18.38 0.00 34.96 3.74
3191 3422 2.001812 CTAGATGCACGTGTTGAGCT 57.998 50.000 18.38 11.83 34.96 4.09
3192 3423 0.371645 GCTAGATGCACGTGTTGAGC 59.628 55.000 18.38 14.54 42.31 4.26
3213 3444 3.959495 ATAACAGATGCAGGGGTGATT 57.041 42.857 0.00 0.00 0.00 2.57
3382 3613 3.679980 CAGGATGACTAACCTTGTCAACG 59.320 47.826 0.66 0.00 45.82 4.10
3434 3665 1.619807 TAGCTTGTTAGGTCCCCGGC 61.620 60.000 0.00 0.00 33.36 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.