Multiple sequence alignment - TraesCS3B01G406500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G406500 chr3B 100.000 3225 0 0 1 3225 642092967 642096191 0.000000e+00 5956
1 TraesCS3B01G406500 chr3B 85.958 527 59 11 6 518 385214752 385215277 1.690000e-152 549
2 TraesCS3B01G406500 chr3B 96.000 125 4 1 1563 1686 788784542 788784418 5.460000e-48 202
3 TraesCS3B01G406500 chr3A 90.773 2937 202 27 1 2882 623940721 623943643 0.000000e+00 3858
4 TraesCS3B01G406500 chr1D 87.594 532 52 6 1 518 44152586 44152055 3.560000e-169 604
5 TraesCS3B01G406500 chr2A 85.822 529 60 6 1 514 74047008 74047536 6.080000e-152 547
6 TraesCS3B01G406500 chr2A 81.853 529 60 16 2 516 111434666 111435172 2.320000e-111 412
7 TraesCS3B01G406500 chr7B 85.529 539 56 12 1 523 474799749 474800281 7.870000e-151 544
8 TraesCS3B01G406500 chr7B 89.143 350 35 2 2879 3225 296018561 296018910 1.780000e-117 433
9 TraesCS3B01G406500 chr5A 85.178 533 65 6 1 521 580571399 580570869 4.740000e-148 534
10 TraesCS3B01G406500 chr5A 76.116 896 157 30 1687 2540 129750140 129751020 1.790000e-112 416
11 TraesCS3B01G406500 chr6D 78.104 886 155 22 1687 2540 1539251 1538373 2.850000e-145 525
12 TraesCS3B01G406500 chr6D 78.720 672 113 22 1689 2348 8141151 8141804 3.850000e-114 422
13 TraesCS3B01G406500 chr6D 77.797 581 106 15 991 1554 1539834 1539260 1.430000e-88 337
14 TraesCS3B01G406500 chr6D 80.214 374 64 9 997 1367 803599 803965 4.100000e-69 272
15 TraesCS3B01G406500 chr5B 77.740 894 153 24 1687 2540 132588828 132589715 1.030000e-139 507
16 TraesCS3B01G406500 chr5B 90.000 340 31 2 2882 3219 340907590 340907252 1.370000e-118 436
17 TraesCS3B01G406500 chr5B 89.112 349 36 1 2879 3225 622109916 622109568 1.780000e-117 433
18 TraesCS3B01G406500 chr6B 77.948 848 156 18 1687 2506 5714692 5713848 4.800000e-138 501
19 TraesCS3B01G406500 chr6B 84.221 526 69 8 1 513 425825185 425825709 1.730000e-137 499
20 TraesCS3B01G406500 chr6B 90.202 347 30 3 2883 3225 539964257 539963911 1.760000e-122 449
21 TraesCS3B01G406500 chr6B 86.039 308 29 7 223 518 425610494 425610189 5.190000e-83 318
22 TraesCS3B01G406500 chr6B 80.376 372 62 8 998 1367 3382974 3383336 4.100000e-69 272
23 TraesCS3B01G406500 chr3D 88.406 414 45 3 3 414 550642227 550642639 2.230000e-136 496
24 TraesCS3B01G406500 chr2B 84.181 531 61 11 1 516 161465872 161466394 8.040000e-136 494
25 TraesCS3B01G406500 chr2B 89.398 349 34 2 2879 3225 490955274 490954927 1.370000e-118 436
26 TraesCS3B01G406500 chr2B 88.825 349 37 1 2879 3225 373841841 373841493 8.270000e-116 427
27 TraesCS3B01G406500 chr4B 83.804 531 70 10 1 517 119397942 119397414 1.040000e-134 490
28 TraesCS3B01G406500 chr4B 89.685 349 33 2 2879 3225 436834369 436834022 2.950000e-120 442
29 TraesCS3B01G406500 chr4B 89.398 349 35 1 2879 3225 496646945 496646597 3.820000e-119 438
30 TraesCS3B01G406500 chr4B 77.632 532 101 9 3 518 368083011 368083540 1.120000e-79 307
31 TraesCS3B01G406500 chr5D 83.302 533 68 12 1 518 537820027 537819501 3.770000e-129 472
32 TraesCS3B01G406500 chr5D 89.398 349 35 1 2879 3225 455161050 455161398 3.820000e-119 438
33 TraesCS3B01G406500 chr7D 83.176 529 64 10 1 516 3638697 3638181 8.150000e-126 460
34 TraesCS3B01G406500 chr7D 78.664 539 96 12 1031 1554 558888265 558887731 1.110000e-89 340
35 TraesCS3B01G406500 chr7D 82.609 322 51 4 1700 2019 558887712 558887394 2.450000e-71 279
36 TraesCS3B01G406500 chr7D 78.140 430 71 15 982 1411 7453862 7454268 5.340000e-63 252
37 TraesCS3B01G406500 chr2D 82.519 532 66 13 1 516 111344717 111345237 2.950000e-120 442
38 TraesCS3B01G406500 chr6A 77.976 672 119 20 1689 2348 8609652 8610306 8.390000e-106 394
39 TraesCS3B01G406500 chr6A 78.842 449 75 18 1883 2315 8388764 8389208 5.270000e-73 285
40 TraesCS3B01G406500 chr6A 80.376 372 62 8 998 1367 286331 286693 4.100000e-69 272
41 TraesCS3B01G406500 chr7A 80.577 381 62 10 982 1362 8381237 8381605 1.890000e-72 283
42 TraesCS3B01G406500 chr4A 79.948 384 63 9 982 1363 732778923 732779294 1.470000e-68 270
43 TraesCS3B01G406500 chr1B 92.800 125 8 1 1563 1686 427650830 427650954 2.560000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G406500 chr3B 642092967 642096191 3224 False 5956.0 5956 100.0000 1 3225 1 chr3B.!!$F2 3224
1 TraesCS3B01G406500 chr3B 385214752 385215277 525 False 549.0 549 85.9580 6 518 1 chr3B.!!$F1 512
2 TraesCS3B01G406500 chr3A 623940721 623943643 2922 False 3858.0 3858 90.7730 1 2882 1 chr3A.!!$F1 2881
3 TraesCS3B01G406500 chr1D 44152055 44152586 531 True 604.0 604 87.5940 1 518 1 chr1D.!!$R1 517
4 TraesCS3B01G406500 chr2A 74047008 74047536 528 False 547.0 547 85.8220 1 514 1 chr2A.!!$F1 513
5 TraesCS3B01G406500 chr2A 111434666 111435172 506 False 412.0 412 81.8530 2 516 1 chr2A.!!$F2 514
6 TraesCS3B01G406500 chr7B 474799749 474800281 532 False 544.0 544 85.5290 1 523 1 chr7B.!!$F2 522
7 TraesCS3B01G406500 chr5A 580570869 580571399 530 True 534.0 534 85.1780 1 521 1 chr5A.!!$R1 520
8 TraesCS3B01G406500 chr5A 129750140 129751020 880 False 416.0 416 76.1160 1687 2540 1 chr5A.!!$F1 853
9 TraesCS3B01G406500 chr6D 1538373 1539834 1461 True 431.0 525 77.9505 991 2540 2 chr6D.!!$R1 1549
10 TraesCS3B01G406500 chr6D 8141151 8141804 653 False 422.0 422 78.7200 1689 2348 1 chr6D.!!$F2 659
11 TraesCS3B01G406500 chr5B 132588828 132589715 887 False 507.0 507 77.7400 1687 2540 1 chr5B.!!$F1 853
12 TraesCS3B01G406500 chr6B 5713848 5714692 844 True 501.0 501 77.9480 1687 2506 1 chr6B.!!$R1 819
13 TraesCS3B01G406500 chr6B 425825185 425825709 524 False 499.0 499 84.2210 1 513 1 chr6B.!!$F2 512
14 TraesCS3B01G406500 chr2B 161465872 161466394 522 False 494.0 494 84.1810 1 516 1 chr2B.!!$F1 515
15 TraesCS3B01G406500 chr4B 119397414 119397942 528 True 490.0 490 83.8040 1 517 1 chr4B.!!$R1 516
16 TraesCS3B01G406500 chr4B 368083011 368083540 529 False 307.0 307 77.6320 3 518 1 chr4B.!!$F1 515
17 TraesCS3B01G406500 chr5D 537819501 537820027 526 True 472.0 472 83.3020 1 518 1 chr5D.!!$R1 517
18 TraesCS3B01G406500 chr7D 3638181 3638697 516 True 460.0 460 83.1760 1 516 1 chr7D.!!$R1 515
19 TraesCS3B01G406500 chr7D 558887394 558888265 871 True 309.5 340 80.6365 1031 2019 2 chr7D.!!$R2 988
20 TraesCS3B01G406500 chr2D 111344717 111345237 520 False 442.0 442 82.5190 1 516 1 chr2D.!!$F1 515
21 TraesCS3B01G406500 chr6A 8609652 8610306 654 False 394.0 394 77.9760 1689 2348 1 chr6A.!!$F3 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 146 0.121197 ACGGGATGGGGATGGGATAT 59.879 55.0 0.0 0.00 0.0 1.63 F
1123 1173 0.032540 CATCCGCCACATGATCGAGA 59.967 55.0 0.0 0.46 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1285 1335 0.247736 CAGTTCTTGAGGTCCTCGGG 59.752 60.0 14.34 9.18 32.35 5.14 R
2620 2730 0.037882 ACATGTGTCTGGACGAGCTG 60.038 55.0 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.043816 TTAACCGTTACCCGTGTCCA 58.956 50.000 0.00 0.00 33.66 4.02
47 48 6.940298 CCGTGTCCATATGGGTAATTAATCTT 59.060 38.462 21.78 0.00 38.11 2.40
142 146 0.121197 ACGGGATGGGGATGGGATAT 59.879 55.000 0.00 0.00 0.00 1.63
149 153 4.478317 GGATGGGGATGGGATATCATTACA 59.522 45.833 4.83 0.00 0.00 2.41
181 185 1.409661 CCCGCTTTACCCATTAAGGCT 60.410 52.381 0.00 0.00 39.96 4.58
308 315 5.995897 CCCTAACCTAGCCACAACATATTAC 59.004 44.000 0.00 0.00 0.00 1.89
361 369 8.177119 ACTGAAATGCTATCAAAGGTTGTTAA 57.823 30.769 0.00 0.00 0.00 2.01
418 427 3.246112 CGGCGGGGATGGGGATAA 61.246 66.667 0.00 0.00 0.00 1.75
450 473 0.477597 GTATGGGGATGGGGATGGGA 60.478 60.000 0.00 0.00 0.00 4.37
454 477 1.371447 GGGGATGGGGATGGGAATGT 61.371 60.000 0.00 0.00 0.00 2.71
547 572 1.343069 ACACTGTCCTCCTCAAGGTC 58.657 55.000 0.00 0.00 46.32 3.85
550 575 0.248843 CTGTCCTCCTCAAGGTCTGC 59.751 60.000 0.00 0.00 46.32 4.26
564 589 4.778534 AGGTCTGCATTGAACAATTCAG 57.221 40.909 16.65 16.65 41.36 3.02
565 590 3.508793 AGGTCTGCATTGAACAATTCAGG 59.491 43.478 20.31 8.06 40.71 3.86
573 598 5.290158 GCATTGAACAATTCAGGTATTGCAG 59.710 40.000 0.00 0.00 41.38 4.41
583 608 4.620982 TCAGGTATTGCAGTCATACATCG 58.379 43.478 8.81 0.00 0.00 3.84
586 611 6.015434 TCAGGTATTGCAGTCATACATCGTAT 60.015 38.462 8.81 0.00 0.00 3.06
598 623 9.383519 AGTCATACATCGTATTCACAAGAAAAT 57.616 29.630 0.00 0.00 37.29 1.82
604 629 8.567948 ACATCGTATTCACAAGAAAATCTTTGT 58.432 29.630 0.00 0.00 33.78 2.83
607 632 8.067784 TCGTATTCACAAGAAAATCTTTGTCAC 58.932 33.333 0.00 0.00 33.78 3.67
625 650 3.065925 GTCACGTAGACCGGCTTATAAGT 59.934 47.826 13.91 0.00 41.56 2.24
626 651 3.313526 TCACGTAGACCGGCTTATAAGTC 59.686 47.826 13.91 10.65 42.24 3.01
638 663 0.325860 TATAAGTCGGGCCCACACCT 60.326 55.000 24.92 9.99 0.00 4.00
639 664 1.623542 ATAAGTCGGGCCCACACCTC 61.624 60.000 24.92 4.66 0.00 3.85
688 713 5.528320 CCAAAGATGCCAAAGTTGTTTCATT 59.472 36.000 0.00 0.00 0.00 2.57
767 817 5.715434 TTGGTTTGGTACTATTTGGCTTC 57.285 39.130 0.00 0.00 0.00 3.86
768 818 4.730966 TGGTTTGGTACTATTTGGCTTCA 58.269 39.130 0.00 0.00 0.00 3.02
772 822 7.451877 TGGTTTGGTACTATTTGGCTTCATTTA 59.548 33.333 0.00 0.00 0.00 1.40
816 866 1.579140 TAGCCATCCACCCATTGCCA 61.579 55.000 0.00 0.00 0.00 4.92
821 871 0.909133 ATCCACCCATTGCCAAACCC 60.909 55.000 0.00 0.00 0.00 4.11
872 922 4.974438 ACGGACCCCAGAAGCCCA 62.974 66.667 0.00 0.00 0.00 5.36
910 960 3.985925 GCAACAAAGCTTCCATCTTCTTG 59.014 43.478 0.00 0.00 0.00 3.02
915 965 3.795688 AGCTTCCATCTTCTTGTTCCA 57.204 42.857 0.00 0.00 0.00 3.53
947 997 2.104170 AGAGTTTCCCCTTCTCGCTAG 58.896 52.381 0.00 0.00 33.96 3.42
954 1004 0.178301 CCCTTCTCGCTAGGGTTTCC 59.822 60.000 6.70 0.00 46.16 3.13
956 1006 1.555533 CCTTCTCGCTAGGGTTTCCTT 59.444 52.381 6.70 0.00 41.56 3.36
959 1009 0.744771 CTCGCTAGGGTTTCCTTGGC 60.745 60.000 6.70 0.00 41.56 4.52
965 1015 2.202899 GGTTTCCTTGGCCCCCAA 59.797 61.111 0.00 0.00 41.69 4.12
977 1027 3.189646 CCCCAACCCTTCCACCCA 61.190 66.667 0.00 0.00 0.00 4.51
980 1030 0.399233 CCCAACCCTTCCACCCAAAA 60.399 55.000 0.00 0.00 0.00 2.44
1123 1173 0.032540 CATCCGCCACATGATCGAGA 59.967 55.000 0.00 0.46 0.00 4.04
1143 1193 3.033764 GAGTGCGCCGACAACGAA 61.034 61.111 4.18 0.00 42.66 3.85
1147 1197 1.956678 TGCGCCGACAACGAAATCA 60.957 52.632 4.18 0.00 42.66 2.57
1161 1211 2.227865 CGAAATCACAATCCCCAACGTT 59.772 45.455 0.00 0.00 0.00 3.99
1202 1252 3.556999 AGGTCATCGAGTACTGCTACAT 58.443 45.455 0.00 0.00 0.00 2.29
1240 1290 4.849329 GCGCTACCGTCGGTGGAG 62.849 72.222 29.72 26.68 36.20 3.86
1267 1317 1.447140 GCCGTTGCGTCTGATACCA 60.447 57.895 0.00 0.00 0.00 3.25
1376 1426 8.597167 CATCCTGGTATGATATCCTTTAGTTCA 58.403 37.037 0.00 0.00 0.00 3.18
1424 1474 6.466885 TTTTTCTTTTTGTTCCCCGTATGA 57.533 33.333 0.00 0.00 0.00 2.15
1493 1552 6.825721 GGGGGAATACTCATATCATCATCAAC 59.174 42.308 0.00 0.00 0.00 3.18
1508 1567 7.203218 TCATCATCAACGTAGATTCTCGATTT 58.797 34.615 10.94 0.00 0.00 2.17
1514 1583 7.033185 TCAACGTAGATTCTCGATTTGATTCA 58.967 34.615 10.94 0.00 0.00 2.57
1614 1683 7.756614 ACTTTCCACTTTCCTAAACTAAGGAT 58.243 34.615 0.00 0.00 45.14 3.24
1723 1793 8.848474 ACCATACACAATCATAGTAAATAGGC 57.152 34.615 0.00 0.00 0.00 3.93
1757 1828 8.091449 TCTTTTTGTGGTTTGTATGTTTCACTT 58.909 29.630 0.00 0.00 0.00 3.16
1793 1864 5.268387 TGTTGTTATGCATAACCTGGGAAT 58.732 37.500 35.25 0.26 41.41 3.01
1890 1961 3.192422 CGAAACAATGGGCCACTCATAAA 59.808 43.478 9.28 0.00 0.00 1.40
1941 2022 9.926158 ACATACATTAATGCTTCTCTCTGATAG 57.074 33.333 15.48 0.00 0.00 2.08
2002 2083 7.466746 ACCTTGTAACACATCTTAATGCAAT 57.533 32.000 0.00 0.00 36.26 3.56
2078 2159 7.907389 TCTCTGACACTATGTGGTTCTTATTT 58.093 34.615 2.72 0.00 37.94 1.40
2108 2189 3.953201 GCTGCATGCCATCTTAACC 57.047 52.632 16.68 0.00 35.15 2.85
2146 2227 6.183361 TGGACCTAATATCCCAGACTATGACT 60.183 42.308 0.00 0.00 35.12 3.41
2161 2242 4.964897 ACTATGACTGACATGATCAAGGGA 59.035 41.667 0.00 0.00 39.77 4.20
2230 2312 2.738587 TGCTCGAGGAGTAGGAGAAT 57.261 50.000 15.58 0.00 31.39 2.40
2251 2333 0.400213 TTCGCAGGGAGAACCAATGT 59.600 50.000 0.00 0.00 43.89 2.71
2270 2353 0.742281 TGCATTTGAGAGAGGAGCGC 60.742 55.000 0.00 0.00 0.00 5.92
2283 2366 0.108329 GGAGCGCCTAAGTTGCACTA 60.108 55.000 2.29 0.00 0.00 2.74
2365 2452 3.785887 TGTAATTTCTGGGCCCTATGAGT 59.214 43.478 25.70 8.63 0.00 3.41
2509 2619 3.265221 TCTCTCCAGCCAATGTGAAATCT 59.735 43.478 0.00 0.00 0.00 2.40
2510 2620 3.614092 TCTCCAGCCAATGTGAAATCTC 58.386 45.455 0.00 0.00 0.00 2.75
2512 2622 3.952323 CTCCAGCCAATGTGAAATCTCAT 59.048 43.478 0.00 0.00 33.05 2.90
2524 2634 6.671190 TGTGAAATCTCATTGTAGTTGCTTG 58.329 36.000 0.00 0.00 33.05 4.01
2526 2636 7.020010 GTGAAATCTCATTGTAGTTGCTTGAG 58.980 38.462 0.00 0.00 36.09 3.02
2547 2657 1.102978 GGCCAATATGCTCAACCGTT 58.897 50.000 0.00 0.00 0.00 4.44
2560 2670 3.142951 TCAACCGTTCGATCAACCATTT 58.857 40.909 0.00 0.00 0.00 2.32
2565 2675 2.347452 CGTTCGATCAACCATTTAGCGT 59.653 45.455 0.00 0.00 0.00 5.07
2574 2684 1.903860 ACCATTTAGCGTGACCTACCA 59.096 47.619 0.00 0.00 0.00 3.25
2604 2714 4.120331 GGCCATGTTGCGCTCACC 62.120 66.667 9.73 2.43 0.00 4.02
2608 2718 1.349627 CATGTTGCGCTCACCGATC 59.650 57.895 9.73 0.00 40.02 3.69
2619 2729 1.474478 CTCACCGATCTGTGCTAGTGT 59.526 52.381 12.05 0.00 36.17 3.55
2620 2730 1.472878 TCACCGATCTGTGCTAGTGTC 59.527 52.381 12.05 0.00 36.17 3.67
2632 2742 1.454201 CTAGTGTCAGCTCGTCCAGA 58.546 55.000 0.00 0.00 0.00 3.86
2637 2747 0.244994 GTCAGCTCGTCCAGACACAT 59.755 55.000 0.00 0.00 0.00 3.21
2643 2753 2.061773 CTCGTCCAGACACATGTGAAC 58.938 52.381 31.94 22.58 0.00 3.18
2644 2754 1.410882 TCGTCCAGACACATGTGAACA 59.589 47.619 31.94 8.10 0.00 3.18
2649 2759 3.004629 TCCAGACACATGTGAACATTTGC 59.995 43.478 31.94 9.96 37.50 3.68
2658 2768 2.226200 TGTGAACATTTGCGACATGGAG 59.774 45.455 0.00 0.00 0.00 3.86
2665 2775 4.098349 ACATTTGCGACATGGAGCATATTT 59.902 37.500 16.23 8.85 43.42 1.40
2719 2829 0.897621 CCAAGCAGGTCAAAATCCCC 59.102 55.000 0.00 0.00 0.00 4.81
2728 2838 2.031465 AAAATCCCCGCGACACGT 59.969 55.556 8.23 0.00 41.42 4.49
2730 2840 2.999739 AAAATCCCCGCGACACGTGT 63.000 55.000 23.64 23.64 41.42 4.49
2747 2857 1.226888 GTCGGGCGACTGTACCATC 60.227 63.158 0.00 0.00 41.57 3.51
2824 2934 0.326927 TTGGAGGTAGGGGAAAAGCG 59.673 55.000 0.00 0.00 0.00 4.68
2834 2944 1.478105 GGGGAAAAGCGATTGAAGCAT 59.522 47.619 0.00 0.00 37.01 3.79
2853 2963 1.229082 CGTGCCCTAGCCCCCTATA 60.229 63.158 0.00 0.00 38.69 1.31
2879 2989 3.285215 GCTGGAGCATGCCGGATG 61.285 66.667 15.66 7.64 41.59 3.51
2881 2991 1.452651 CTGGAGCATGCCGGATGTT 60.453 57.895 15.66 4.07 36.35 2.71
2882 2992 1.721664 CTGGAGCATGCCGGATGTTG 61.722 60.000 15.66 0.00 36.35 3.33
2883 2993 2.484062 GGAGCATGCCGGATGTTGG 61.484 63.158 15.66 0.00 34.14 3.77
2884 2994 1.750399 GAGCATGCCGGATGTTGGT 60.750 57.895 15.66 1.02 34.14 3.67
2885 2995 1.996786 GAGCATGCCGGATGTTGGTG 61.997 60.000 15.66 0.00 34.14 4.17
2886 2996 2.342650 GCATGCCGGATGTTGGTGT 61.343 57.895 5.05 0.00 34.14 4.16
2887 2997 1.029408 GCATGCCGGATGTTGGTGTA 61.029 55.000 5.05 0.00 34.14 2.90
2888 2998 0.732571 CATGCCGGATGTTGGTGTAC 59.267 55.000 5.05 0.00 0.00 2.90
2889 2999 0.393808 ATGCCGGATGTTGGTGTACC 60.394 55.000 5.05 0.00 0.00 3.34
2890 3000 1.003112 GCCGGATGTTGGTGTACCA 60.003 57.895 5.05 0.00 45.94 3.25
2908 3018 2.687370 CCAAAGTATGGGTGCTTTTGC 58.313 47.619 0.00 0.00 46.27 3.68
2920 3030 2.438868 GCTTTTGCACCCCTTACTTG 57.561 50.000 0.00 0.00 46.58 3.16
2921 3031 1.686587 GCTTTTGCACCCCTTACTTGT 59.313 47.619 0.00 0.00 46.58 3.16
2922 3032 2.545742 GCTTTTGCACCCCTTACTTGTG 60.546 50.000 0.00 0.00 46.58 3.33
2926 3036 3.412722 CACCCCTTACTTGTGCACA 57.587 52.632 17.42 17.42 0.00 4.57
2927 3037 1.238439 CACCCCTTACTTGTGCACAG 58.762 55.000 20.59 16.04 0.00 3.66
2928 3038 1.136828 ACCCCTTACTTGTGCACAGA 58.863 50.000 20.59 10.29 0.00 3.41
2929 3039 1.202770 ACCCCTTACTTGTGCACAGAC 60.203 52.381 20.59 0.00 0.00 3.51
2930 3040 1.148310 CCCTTACTTGTGCACAGACG 58.852 55.000 20.59 14.54 0.00 4.18
2931 3041 1.148310 CCTTACTTGTGCACAGACGG 58.852 55.000 20.59 12.35 0.00 4.79
2932 3042 1.540363 CCTTACTTGTGCACAGACGGT 60.540 52.381 20.59 18.07 0.00 4.83
2933 3043 1.792949 CTTACTTGTGCACAGACGGTC 59.207 52.381 20.59 0.00 0.00 4.79
2934 3044 0.318360 TACTTGTGCACAGACGGTCG 60.318 55.000 20.59 6.35 0.00 4.79
2935 3045 2.943345 CTTGTGCACAGACGGTCGC 61.943 63.158 20.59 1.00 0.00 5.19
2936 3046 3.724914 TTGTGCACAGACGGTCGCA 62.725 57.895 20.59 3.81 33.26 5.10
2937 3047 3.406361 GTGCACAGACGGTCGCAG 61.406 66.667 13.17 3.61 35.31 5.18
2940 3050 4.662961 CACAGACGGTCGCAGCCA 62.663 66.667 1.89 0.00 0.00 4.75
2941 3051 4.664677 ACAGACGGTCGCAGCCAC 62.665 66.667 1.89 0.00 0.00 5.01
2947 3057 3.480133 GGTCGCAGCCACCCCTAT 61.480 66.667 0.00 0.00 0.00 2.57
2948 3058 2.138179 GGTCGCAGCCACCCCTATA 61.138 63.158 0.00 0.00 0.00 1.31
2949 3059 1.367840 GTCGCAGCCACCCCTATAG 59.632 63.158 0.00 0.00 0.00 1.31
2950 3060 2.031163 CGCAGCCACCCCTATAGC 59.969 66.667 0.00 0.00 0.00 2.97
2951 3061 2.807107 CGCAGCCACCCCTATAGCA 61.807 63.158 0.00 0.00 0.00 3.49
2952 3062 1.531748 GCAGCCACCCCTATAGCAA 59.468 57.895 0.00 0.00 0.00 3.91
2953 3063 0.536006 GCAGCCACCCCTATAGCAAG 60.536 60.000 0.00 0.00 0.00 4.01
2954 3064 0.109342 CAGCCACCCCTATAGCAAGG 59.891 60.000 0.00 0.00 36.30 3.61
2955 3065 1.228276 GCCACCCCTATAGCAAGGC 60.228 63.158 7.63 7.63 35.09 4.35
2956 3066 1.709994 GCCACCCCTATAGCAAGGCT 61.710 60.000 13.32 0.00 43.41 4.58
2957 3067 0.846693 CCACCCCTATAGCAAGGCTT 59.153 55.000 0.00 0.00 40.44 4.35
2958 3068 1.477558 CCACCCCTATAGCAAGGCTTG 60.478 57.143 22.75 22.75 40.44 4.01
2959 3069 0.846693 ACCCCTATAGCAAGGCTTGG 59.153 55.000 27.25 11.49 40.44 3.61
2960 3070 0.538287 CCCCTATAGCAAGGCTTGGC 60.538 60.000 27.25 19.00 40.44 4.52
2961 3071 0.886490 CCCTATAGCAAGGCTTGGCG 60.886 60.000 27.25 3.96 40.44 5.69
2962 3072 0.106708 CCTATAGCAAGGCTTGGCGA 59.893 55.000 27.25 16.11 40.44 5.54
2963 3073 1.506493 CTATAGCAAGGCTTGGCGAG 58.494 55.000 27.25 14.87 40.44 5.03
2964 3074 0.106708 TATAGCAAGGCTTGGCGAGG 59.893 55.000 27.25 2.41 40.44 4.63
2971 3081 4.087892 GCTTGGCGAGGCAGAGGA 62.088 66.667 3.44 0.00 0.00 3.71
2972 3082 2.665000 CTTGGCGAGGCAGAGGAA 59.335 61.111 0.00 0.00 0.00 3.36
2973 3083 1.449246 CTTGGCGAGGCAGAGGAAG 60.449 63.158 0.00 0.00 0.00 3.46
2974 3084 1.892819 CTTGGCGAGGCAGAGGAAGA 61.893 60.000 0.00 0.00 0.00 2.87
2975 3085 2.172483 TTGGCGAGGCAGAGGAAGAC 62.172 60.000 0.00 0.00 0.00 3.01
2976 3086 2.650116 GGCGAGGCAGAGGAAGACA 61.650 63.158 0.00 0.00 0.00 3.41
2977 3087 1.293498 GCGAGGCAGAGGAAGACAA 59.707 57.895 0.00 0.00 0.00 3.18
2978 3088 1.016653 GCGAGGCAGAGGAAGACAAC 61.017 60.000 0.00 0.00 0.00 3.32
2979 3089 0.318441 CGAGGCAGAGGAAGACAACA 59.682 55.000 0.00 0.00 0.00 3.33
2980 3090 1.671261 CGAGGCAGAGGAAGACAACAG 60.671 57.143 0.00 0.00 0.00 3.16
2981 3091 0.689623 AGGCAGAGGAAGACAACAGG 59.310 55.000 0.00 0.00 0.00 4.00
2982 3092 0.687354 GGCAGAGGAAGACAACAGGA 59.313 55.000 0.00 0.00 0.00 3.86
2983 3093 1.338579 GGCAGAGGAAGACAACAGGAG 60.339 57.143 0.00 0.00 0.00 3.69
2984 3094 1.338579 GCAGAGGAAGACAACAGGAGG 60.339 57.143 0.00 0.00 0.00 4.30
2985 3095 0.980423 AGAGGAAGACAACAGGAGGC 59.020 55.000 0.00 0.00 0.00 4.70
2986 3096 0.687354 GAGGAAGACAACAGGAGGCA 59.313 55.000 0.00 0.00 0.00 4.75
2987 3097 1.072331 GAGGAAGACAACAGGAGGCAA 59.928 52.381 0.00 0.00 0.00 4.52
2988 3098 1.072965 AGGAAGACAACAGGAGGCAAG 59.927 52.381 0.00 0.00 0.00 4.01
2989 3099 1.072331 GGAAGACAACAGGAGGCAAGA 59.928 52.381 0.00 0.00 0.00 3.02
2990 3100 2.147150 GAAGACAACAGGAGGCAAGAC 58.853 52.381 0.00 0.00 0.00 3.01
2991 3101 1.131638 AGACAACAGGAGGCAAGACA 58.868 50.000 0.00 0.00 0.00 3.41
2992 3102 1.490490 AGACAACAGGAGGCAAGACAA 59.510 47.619 0.00 0.00 0.00 3.18
2993 3103 1.876156 GACAACAGGAGGCAAGACAAG 59.124 52.381 0.00 0.00 0.00 3.16
2994 3104 1.490490 ACAACAGGAGGCAAGACAAGA 59.510 47.619 0.00 0.00 0.00 3.02
2995 3105 2.092429 ACAACAGGAGGCAAGACAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
2996 3106 2.262423 ACAGGAGGCAAGACAAGAAC 57.738 50.000 0.00 0.00 0.00 3.01
2997 3107 1.490490 ACAGGAGGCAAGACAAGAACA 59.510 47.619 0.00 0.00 0.00 3.18
2998 3108 2.092429 ACAGGAGGCAAGACAAGAACAA 60.092 45.455 0.00 0.00 0.00 2.83
2999 3109 2.951642 CAGGAGGCAAGACAAGAACAAA 59.048 45.455 0.00 0.00 0.00 2.83
3000 3110 3.004106 CAGGAGGCAAGACAAGAACAAAG 59.996 47.826 0.00 0.00 0.00 2.77
3001 3111 3.117888 AGGAGGCAAGACAAGAACAAAGA 60.118 43.478 0.00 0.00 0.00 2.52
3002 3112 3.632145 GGAGGCAAGACAAGAACAAAGAA 59.368 43.478 0.00 0.00 0.00 2.52
3003 3113 4.498177 GGAGGCAAGACAAGAACAAAGAAC 60.498 45.833 0.00 0.00 0.00 3.01
3004 3114 4.016444 AGGCAAGACAAGAACAAAGAACA 58.984 39.130 0.00 0.00 0.00 3.18
3005 3115 4.646492 AGGCAAGACAAGAACAAAGAACAT 59.354 37.500 0.00 0.00 0.00 2.71
3006 3116 4.978580 GGCAAGACAAGAACAAAGAACATC 59.021 41.667 0.00 0.00 0.00 3.06
3007 3117 5.450412 GGCAAGACAAGAACAAAGAACATCA 60.450 40.000 0.00 0.00 0.00 3.07
3008 3118 6.035843 GCAAGACAAGAACAAAGAACATCAA 58.964 36.000 0.00 0.00 0.00 2.57
3009 3119 6.197842 GCAAGACAAGAACAAAGAACATCAAG 59.802 38.462 0.00 0.00 0.00 3.02
3010 3120 6.382869 AGACAAGAACAAAGAACATCAAGG 57.617 37.500 0.00 0.00 0.00 3.61
3011 3121 4.936891 ACAAGAACAAAGAACATCAAGGC 58.063 39.130 0.00 0.00 0.00 4.35
3012 3122 4.402155 ACAAGAACAAAGAACATCAAGGCA 59.598 37.500 0.00 0.00 0.00 4.75
3013 3123 5.105392 ACAAGAACAAAGAACATCAAGGCAA 60.105 36.000 0.00 0.00 0.00 4.52
3014 3124 5.192327 AGAACAAAGAACATCAAGGCAAG 57.808 39.130 0.00 0.00 0.00 4.01
3015 3125 4.646492 AGAACAAAGAACATCAAGGCAAGT 59.354 37.500 0.00 0.00 0.00 3.16
3016 3126 4.311816 ACAAAGAACATCAAGGCAAGTG 57.688 40.909 0.00 0.00 0.00 3.16
3017 3127 3.054878 CAAAGAACATCAAGGCAAGTGC 58.945 45.455 0.00 0.00 41.14 4.40
3018 3128 2.283145 AGAACATCAAGGCAAGTGCT 57.717 45.000 2.85 0.00 41.70 4.40
3019 3129 2.157738 AGAACATCAAGGCAAGTGCTC 58.842 47.619 2.85 0.00 41.70 4.26
3020 3130 1.881973 GAACATCAAGGCAAGTGCTCA 59.118 47.619 2.85 0.00 41.70 4.26
3021 3131 1.531423 ACATCAAGGCAAGTGCTCAG 58.469 50.000 2.85 0.00 41.70 3.35
3022 3132 1.072806 ACATCAAGGCAAGTGCTCAGA 59.927 47.619 2.85 0.00 41.70 3.27
3023 3133 1.738350 CATCAAGGCAAGTGCTCAGAG 59.262 52.381 2.85 0.00 41.70 3.35
3024 3134 0.761187 TCAAGGCAAGTGCTCAGAGT 59.239 50.000 2.85 0.00 41.70 3.24
3025 3135 1.970640 TCAAGGCAAGTGCTCAGAGTA 59.029 47.619 2.85 0.00 41.70 2.59
3026 3136 2.028658 TCAAGGCAAGTGCTCAGAGTAG 60.029 50.000 2.85 0.00 41.70 2.57
3027 3137 0.248843 AGGCAAGTGCTCAGAGTAGC 59.751 55.000 2.85 0.00 43.08 3.58
3034 3144 2.382139 GCTCAGAGTAGCAAGCAGC 58.618 57.895 0.00 0.00 42.30 5.25
3050 3160 3.756727 GCAAGAGGCAAGCAGGGC 61.757 66.667 0.00 0.00 43.97 5.19
3067 3177 4.440127 CCATGCCCGGCAACAAGC 62.440 66.667 18.00 0.00 43.62 4.01
3076 3186 2.727544 GCAACAAGCCTTGCCGAA 59.272 55.556 3.88 0.00 40.68 4.30
3077 3187 1.372128 GCAACAAGCCTTGCCGAAG 60.372 57.895 3.88 0.00 40.68 3.79
3078 3188 1.372128 CAACAAGCCTTGCCGAAGC 60.372 57.895 3.88 0.00 40.48 3.86
3079 3189 2.908073 AACAAGCCTTGCCGAAGCG 61.908 57.895 3.88 0.00 44.31 4.68
3080 3190 3.049674 CAAGCCTTGCCGAAGCGA 61.050 61.111 0.00 0.00 44.31 4.93
3081 3191 3.050275 AAGCCTTGCCGAAGCGAC 61.050 61.111 0.00 0.00 44.31 5.19
3084 3194 3.121030 CCTTGCCGAAGCGACCTG 61.121 66.667 0.00 0.00 44.31 4.00
3085 3195 3.793144 CTTGCCGAAGCGACCTGC 61.793 66.667 0.00 0.00 44.31 4.85
3106 3216 4.295199 GCCCCCGACAAACCCCTT 62.295 66.667 0.00 0.00 0.00 3.95
3107 3217 2.282887 CCCCCGACAAACCCCTTG 60.283 66.667 0.00 0.00 41.19 3.61
3108 3218 2.989253 CCCCGACAAACCCCTTGC 60.989 66.667 0.00 0.00 38.75 4.01
3109 3219 2.989253 CCCGACAAACCCCTTGCC 60.989 66.667 0.00 0.00 38.75 4.52
3110 3220 2.203422 CCGACAAACCCCTTGCCA 60.203 61.111 0.00 0.00 38.75 4.92
3111 3221 2.268076 CCGACAAACCCCTTGCCAG 61.268 63.158 0.00 0.00 38.75 4.85
3112 3222 2.268076 CGACAAACCCCTTGCCAGG 61.268 63.158 0.00 0.00 38.75 4.45
3120 3230 4.326255 CCTTGCCAGGGTAGCTTG 57.674 61.111 0.00 0.00 36.36 4.01
3121 3231 2.048603 CCTTGCCAGGGTAGCTTGC 61.049 63.158 0.00 0.00 36.36 4.01
3122 3232 1.303561 CTTGCCAGGGTAGCTTGCA 60.304 57.895 0.00 0.00 0.00 4.08
3123 3233 0.895100 CTTGCCAGGGTAGCTTGCAA 60.895 55.000 0.00 0.00 39.42 4.08
3124 3234 0.468958 TTGCCAGGGTAGCTTGCAAA 60.469 50.000 0.00 1.12 38.83 3.68
3137 3247 1.321474 TTGCAAAGAGACCAGCAAGG 58.679 50.000 0.00 0.00 41.55 3.61
3138 3248 1.174712 TGCAAAGAGACCAGCAAGGC 61.175 55.000 0.00 0.00 43.14 4.35
3139 3249 1.871126 GCAAAGAGACCAGCAAGGCC 61.871 60.000 0.00 0.00 43.14 5.19
3140 3250 0.538057 CAAAGAGACCAGCAAGGCCA 60.538 55.000 5.01 0.00 43.14 5.36
3141 3251 0.538287 AAAGAGACCAGCAAGGCCAC 60.538 55.000 5.01 0.00 43.14 5.01
3142 3252 2.360475 GAGACCAGCAAGGCCACC 60.360 66.667 5.01 0.00 43.14 4.61
3143 3253 3.177884 AGACCAGCAAGGCCACCA 61.178 61.111 5.01 0.00 43.14 4.17
3144 3254 2.985847 GACCAGCAAGGCCACCAC 60.986 66.667 5.01 0.00 43.14 4.16
3145 3255 4.603535 ACCAGCAAGGCCACCACC 62.604 66.667 5.01 0.00 43.14 4.61
3155 3265 4.722700 CCACCACCCGGGCTTGAG 62.723 72.222 24.08 7.73 42.05 3.02
3156 3266 3.636231 CACCACCCGGGCTTGAGA 61.636 66.667 24.08 0.00 42.05 3.27
3157 3267 3.322466 ACCACCCGGGCTTGAGAG 61.322 66.667 24.08 3.72 42.05 3.20
3167 3277 2.537863 GCTTGAGAGCTGTGACACC 58.462 57.895 2.45 0.00 45.65 4.16
3168 3278 0.250038 GCTTGAGAGCTGTGACACCA 60.250 55.000 2.45 0.00 45.65 4.17
3169 3279 1.610102 GCTTGAGAGCTGTGACACCAT 60.610 52.381 2.45 0.00 45.65 3.55
3170 3280 2.354103 GCTTGAGAGCTGTGACACCATA 60.354 50.000 2.45 0.00 45.65 2.74
3171 3281 3.519579 CTTGAGAGCTGTGACACCATAG 58.480 50.000 2.45 0.00 35.00 2.23
3172 3282 2.807676 TGAGAGCTGTGACACCATAGA 58.192 47.619 2.45 0.00 33.90 1.98
3173 3283 2.493675 TGAGAGCTGTGACACCATAGAC 59.506 50.000 2.45 0.00 33.90 2.59
3174 3284 2.493675 GAGAGCTGTGACACCATAGACA 59.506 50.000 2.45 0.00 33.90 3.41
3175 3285 2.899900 AGAGCTGTGACACCATAGACAA 59.100 45.455 2.45 0.00 33.90 3.18
3176 3286 3.517100 AGAGCTGTGACACCATAGACAAT 59.483 43.478 2.45 0.00 33.90 2.71
3177 3287 3.603532 AGCTGTGACACCATAGACAATG 58.396 45.455 2.45 0.00 33.90 2.82
3178 3288 3.008375 AGCTGTGACACCATAGACAATGT 59.992 43.478 2.45 0.00 33.90 2.71
3179 3289 3.753272 GCTGTGACACCATAGACAATGTT 59.247 43.478 2.45 0.00 33.90 2.71
3180 3290 4.935205 GCTGTGACACCATAGACAATGTTA 59.065 41.667 2.45 0.00 33.90 2.41
3181 3291 5.411361 GCTGTGACACCATAGACAATGTTAA 59.589 40.000 2.45 0.00 33.90 2.01
3182 3292 6.072728 GCTGTGACACCATAGACAATGTTAAA 60.073 38.462 2.45 0.00 33.90 1.52
3183 3293 7.433708 TGTGACACCATAGACAATGTTAAAG 57.566 36.000 2.45 0.00 33.34 1.85
3184 3294 7.220740 TGTGACACCATAGACAATGTTAAAGA 58.779 34.615 2.45 0.00 33.34 2.52
3185 3295 7.172532 TGTGACACCATAGACAATGTTAAAGAC 59.827 37.037 2.45 0.00 33.34 3.01
3186 3296 6.653320 TGACACCATAGACAATGTTAAAGACC 59.347 38.462 0.00 0.00 33.34 3.85
3187 3297 6.539173 ACACCATAGACAATGTTAAAGACCA 58.461 36.000 0.00 0.00 33.34 4.02
3188 3298 6.655003 ACACCATAGACAATGTTAAAGACCAG 59.345 38.462 0.00 0.00 33.34 4.00
3189 3299 6.094048 CACCATAGACAATGTTAAAGACCAGG 59.906 42.308 0.00 0.00 33.34 4.45
3190 3300 6.012858 ACCATAGACAATGTTAAAGACCAGGA 60.013 38.462 0.00 0.00 33.34 3.86
3191 3301 7.056635 CCATAGACAATGTTAAAGACCAGGAT 58.943 38.462 0.00 0.00 33.34 3.24
3192 3302 7.557719 CCATAGACAATGTTAAAGACCAGGATT 59.442 37.037 0.00 0.00 33.34 3.01
3193 3303 8.960591 CATAGACAATGTTAAAGACCAGGATTT 58.039 33.333 0.00 0.00 0.00 2.17
3194 3304 7.219484 AGACAATGTTAAAGACCAGGATTTG 57.781 36.000 0.00 0.00 0.00 2.32
3195 3305 7.004086 AGACAATGTTAAAGACCAGGATTTGA 58.996 34.615 0.00 0.00 0.00 2.69
3196 3306 7.505585 AGACAATGTTAAAGACCAGGATTTGAA 59.494 33.333 0.00 0.00 0.00 2.69
3197 3307 7.661040 ACAATGTTAAAGACCAGGATTTGAAG 58.339 34.615 0.00 0.00 0.00 3.02
3198 3308 7.505585 ACAATGTTAAAGACCAGGATTTGAAGA 59.494 33.333 0.00 0.00 0.00 2.87
3199 3309 7.693969 ATGTTAAAGACCAGGATTTGAAGAG 57.306 36.000 0.00 0.00 0.00 2.85
3200 3310 5.473504 TGTTAAAGACCAGGATTTGAAGAGC 59.526 40.000 0.00 0.00 0.00 4.09
3201 3311 3.795688 AAGACCAGGATTTGAAGAGCA 57.204 42.857 0.00 0.00 0.00 4.26
3202 3312 3.064900 AGACCAGGATTTGAAGAGCAC 57.935 47.619 0.00 0.00 0.00 4.40
3203 3313 2.373169 AGACCAGGATTTGAAGAGCACA 59.627 45.455 0.00 0.00 0.00 4.57
3204 3314 3.009916 AGACCAGGATTTGAAGAGCACAT 59.990 43.478 0.00 0.00 0.00 3.21
3205 3315 3.087031 ACCAGGATTTGAAGAGCACATG 58.913 45.455 0.00 0.00 0.00 3.21
3206 3316 2.159282 CCAGGATTTGAAGAGCACATGC 60.159 50.000 0.00 0.00 42.49 4.06
3207 3317 2.097825 AGGATTTGAAGAGCACATGCC 58.902 47.619 0.00 0.00 43.38 4.40
3208 3318 2.097825 GGATTTGAAGAGCACATGCCT 58.902 47.619 0.00 0.00 43.38 4.75
3209 3319 2.098770 GGATTTGAAGAGCACATGCCTC 59.901 50.000 0.00 5.98 43.38 4.70
3210 3320 1.159285 TTTGAAGAGCACATGCCTCG 58.841 50.000 0.00 0.00 43.38 4.63
3211 3321 0.035317 TTGAAGAGCACATGCCTCGT 59.965 50.000 0.00 5.48 43.38 4.18
3212 3322 0.894835 TGAAGAGCACATGCCTCGTA 59.105 50.000 0.00 0.00 43.38 3.43
3213 3323 1.134995 TGAAGAGCACATGCCTCGTAG 60.135 52.381 0.00 0.00 43.38 3.51
3214 3324 0.460987 AAGAGCACATGCCTCGTAGC 60.461 55.000 0.00 0.00 43.38 3.58
3221 3331 2.512286 TGCCTCGTAGCATGCAGC 60.512 61.111 21.98 10.93 46.19 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.170730 GTCCCCTGAAAGATTAATTACCCATAT 58.829 37.037 0.00 0.00 34.07 1.78
47 48 1.906105 GCACATACCCGTCCCCTGAA 61.906 60.000 0.00 0.00 0.00 3.02
69 70 2.017049 CTTCCTCGTGGGCATTAAAGG 58.983 52.381 3.23 0.00 34.39 3.11
108 109 2.972505 CGTCTTGCACGCTGGGTT 60.973 61.111 0.00 0.00 42.87 4.11
308 315 8.470040 AAAACATAGCATTTCAGCACAATAAG 57.530 30.769 0.00 0.00 36.85 1.73
361 369 4.942761 GGAAACCCATACATGCAATCAT 57.057 40.909 0.00 0.00 0.00 2.45
418 427 5.221762 CCATCCCCATACATGCATGATTTTT 60.222 40.000 32.75 12.71 0.00 1.94
430 453 0.775682 CCCATCCCCATCCCCATACA 60.776 60.000 0.00 0.00 0.00 2.29
450 473 2.034879 CCGCGACAGCCTTCACATT 61.035 57.895 8.23 0.00 41.18 2.71
481 504 1.607612 CCAGGCGGGTATTGGACTT 59.392 57.895 0.00 0.00 33.76 3.01
547 572 5.290158 GCAATACCTGAATTGTTCAATGCAG 59.710 40.000 20.66 20.66 39.58 4.41
550 575 6.392354 ACTGCAATACCTGAATTGTTCAATG 58.608 36.000 0.00 0.00 39.58 2.82
564 589 6.645003 TGAATACGATGTATGACTGCAATACC 59.355 38.462 4.90 0.00 0.00 2.73
565 590 7.169140 TGTGAATACGATGTATGACTGCAATAC 59.831 37.037 0.00 0.84 0.00 1.89
573 598 9.638300 GATTTTCTTGTGAATACGATGTATGAC 57.362 33.333 0.00 0.00 31.56 3.06
583 608 7.855904 ACGTGACAAAGATTTTCTTGTGAATAC 59.144 33.333 0.00 0.00 36.71 1.89
586 611 6.189677 ACGTGACAAAGATTTTCTTGTGAA 57.810 33.333 0.00 0.00 36.71 3.18
604 629 3.282021 ACTTATAAGCCGGTCTACGTGA 58.718 45.455 12.54 0.00 42.24 4.35
607 632 2.350197 CCGACTTATAAGCCGGTCTACG 60.350 54.545 26.67 12.76 45.45 3.51
638 663 3.998672 GCTTCACCACCGTCCCGA 61.999 66.667 0.00 0.00 0.00 5.14
639 664 4.308458 TGCTTCACCACCGTCCCG 62.308 66.667 0.00 0.00 0.00 5.14
640 665 2.358737 CTGCTTCACCACCGTCCC 60.359 66.667 0.00 0.00 0.00 4.46
641 666 1.227853 AACTGCTTCACCACCGTCC 60.228 57.895 0.00 0.00 0.00 4.79
745 795 5.141182 TGAAGCCAAATAGTACCAAACCAA 58.859 37.500 0.00 0.00 0.00 3.67
756 806 7.260603 CCTCCAAAGTAAATGAAGCCAAATAG 58.739 38.462 0.00 0.00 0.00 1.73
767 817 7.756395 ATCTATCATGCCTCCAAAGTAAATG 57.244 36.000 0.00 0.00 0.00 2.32
768 818 8.884323 TCTATCTATCATGCCTCCAAAGTAAAT 58.116 33.333 0.00 0.00 0.00 1.40
772 822 6.949117 ATCTATCTATCATGCCTCCAAAGT 57.051 37.500 0.00 0.00 0.00 2.66
816 866 2.448473 TATTGGGGCAAGGCGGGTTT 62.448 55.000 0.00 0.00 0.00 3.27
821 871 0.745128 TTACGTATTGGGGCAAGGCG 60.745 55.000 0.00 0.00 33.29 5.52
872 922 2.835895 GCGTGGTGGGTTGGGTTT 60.836 61.111 0.00 0.00 0.00 3.27
910 960 4.382320 TAGTGGCGGCGGTGGAAC 62.382 66.667 9.78 0.00 0.00 3.62
915 965 2.502692 GAAACTCTAGTGGCGGCGGT 62.503 60.000 9.78 0.00 0.00 5.68
947 997 3.476356 TTGGGGGCCAAGGAAACCC 62.476 63.158 4.39 4.22 38.75 4.11
950 1000 2.202899 GGTTGGGGGCCAAGGAAA 59.797 61.111 4.39 0.00 44.82 3.13
954 1004 2.283894 GAAGGGTTGGGGGCCAAG 60.284 66.667 4.39 0.00 44.82 3.61
959 1009 3.992641 GGGTGGAAGGGTTGGGGG 61.993 72.222 0.00 0.00 0.00 5.40
965 1015 1.234820 GGGTTTTGGGTGGAAGGGT 59.765 57.895 0.00 0.00 0.00 4.34
977 1027 0.035056 CTGGATCCGAGCTGGGTTTT 60.035 55.000 15.09 1.01 38.76 2.43
980 1030 2.765807 CCTGGATCCGAGCTGGGT 60.766 66.667 15.09 0.69 38.76 4.51
1007 1057 0.679002 CTTGCTGGTGTCTCCCATGG 60.679 60.000 4.14 4.14 33.00 3.66
1010 1060 0.615331 GATCTTGCTGGTGTCTCCCA 59.385 55.000 0.00 0.00 34.77 4.37
1123 1173 2.667318 CGTTGTCGGCGCACTCATT 61.667 57.895 10.83 0.00 0.00 2.57
1143 1193 2.870175 TCAACGTTGGGGATTGTGATT 58.130 42.857 27.02 0.00 0.00 2.57
1147 1197 2.167662 GGAATCAACGTTGGGGATTGT 58.832 47.619 27.02 5.80 31.77 2.71
1285 1335 0.247736 CAGTTCTTGAGGTCCTCGGG 59.752 60.000 14.34 9.18 32.35 5.14
1421 1471 5.144100 ACCCAATCTAGATTCGAGTCTCAT 58.856 41.667 14.34 5.20 0.00 2.90
1424 1474 5.665459 CAAACCCAATCTAGATTCGAGTCT 58.335 41.667 15.24 15.28 0.00 3.24
1589 1658 7.145474 TCCTTAGTTTAGGAAAGTGGAAAGT 57.855 36.000 0.00 0.00 41.33 2.66
1590 1659 7.121315 CCATCCTTAGTTTAGGAAAGTGGAAAG 59.879 40.741 5.29 0.00 46.94 2.62
1592 1661 6.481643 CCATCCTTAGTTTAGGAAAGTGGAA 58.518 40.000 5.29 0.00 46.94 3.53
1593 1662 5.045140 CCCATCCTTAGTTTAGGAAAGTGGA 60.045 44.000 10.83 0.00 46.94 4.02
1614 1683 1.280710 TGCTCGCCTTCTTATTTCCCA 59.719 47.619 0.00 0.00 0.00 4.37
1723 1793 1.341080 ACCACAAAAAGATGCCCTGG 58.659 50.000 0.00 0.00 0.00 4.45
1808 1879 6.835819 AGTGCATCTAGTAAGTTCACACTA 57.164 37.500 0.00 0.00 34.30 2.74
1979 2060 6.254157 GCATTGCATTAAGATGTGTTACAAGG 59.746 38.462 3.15 0.00 35.63 3.61
2078 2159 1.004758 ATGCAGCCTAAGAGGGGGA 59.995 57.895 0.00 0.00 35.37 4.81
2099 2180 2.101582 CCAGTCCCTCGAGGTTAAGATG 59.898 54.545 29.25 17.37 36.75 2.90
2108 2189 2.352032 GGTCCACCAGTCCCTCGAG 61.352 68.421 5.13 5.13 35.64 4.04
2146 2227 5.411361 CGTAGTTTTTCCCTTGATCATGTCA 59.589 40.000 0.00 0.00 34.25 3.58
2230 2312 2.238646 ACATTGGTTCTCCCTGCGAATA 59.761 45.455 0.00 0.00 0.00 1.75
2251 2333 0.742281 GCGCTCCTCTCTCAAATGCA 60.742 55.000 0.00 0.00 0.00 3.96
2283 2366 4.860907 ACGACGAATAGTAAGCGTTCATTT 59.139 37.500 0.00 0.00 38.51 2.32
2509 2619 3.338249 GCCTCTCAAGCAACTACAATGA 58.662 45.455 0.00 0.00 0.00 2.57
2510 2620 2.421424 GGCCTCTCAAGCAACTACAATG 59.579 50.000 0.00 0.00 0.00 2.82
2512 2622 1.419762 TGGCCTCTCAAGCAACTACAA 59.580 47.619 3.32 0.00 0.00 2.41
2524 2634 2.225467 GGTTGAGCATATTGGCCTCTC 58.775 52.381 3.32 1.73 0.00 3.20
2526 2636 0.947244 CGGTTGAGCATATTGGCCTC 59.053 55.000 3.32 0.00 0.00 4.70
2547 2657 2.927477 GTCACGCTAAATGGTTGATCGA 59.073 45.455 0.00 0.00 0.00 3.59
2560 2670 1.337447 GCAAACTGGTAGGTCACGCTA 60.337 52.381 0.00 0.00 0.00 4.26
2604 2714 1.133982 AGCTGACACTAGCACAGATCG 59.866 52.381 13.22 0.00 46.07 3.69
2608 2718 0.242286 ACGAGCTGACACTAGCACAG 59.758 55.000 0.00 6.94 46.07 3.66
2619 2729 0.244721 CATGTGTCTGGACGAGCTGA 59.755 55.000 0.00 0.00 0.00 4.26
2620 2730 0.037882 ACATGTGTCTGGACGAGCTG 60.038 55.000 0.00 0.00 0.00 4.24
2632 2742 2.357323 TGTCGCAAATGTTCACATGTGT 59.643 40.909 24.63 3.12 42.27 3.72
2637 2747 2.225467 TCCATGTCGCAAATGTTCACA 58.775 42.857 0.00 0.00 0.00 3.58
2643 2753 3.909776 ATATGCTCCATGTCGCAAATG 57.090 42.857 9.77 0.00 39.89 2.32
2644 2754 4.500205 CCAAATATGCTCCATGTCGCAAAT 60.500 41.667 9.77 0.00 39.89 2.32
2649 2759 2.549754 GACCCAAATATGCTCCATGTCG 59.450 50.000 0.00 0.00 0.00 4.35
2658 2768 3.056607 ACTTGCAAGTGACCCAAATATGC 60.057 43.478 30.66 0.00 37.98 3.14
2665 2775 2.114638 GCAACTTGCAAGTGACCCA 58.885 52.632 31.73 0.00 44.26 4.51
2711 2821 2.031465 ACGTGTCGCGGGGATTTT 59.969 55.556 6.13 0.00 46.52 1.82
2728 2838 2.598099 TGGTACAGTCGCCCGACA 60.598 61.111 21.14 0.00 46.76 4.35
2802 2912 3.024547 GCTTTTCCCCTACCTCCAAATC 58.975 50.000 0.00 0.00 0.00 2.17
2810 2920 2.413310 TCAATCGCTTTTCCCCTACC 57.587 50.000 0.00 0.00 0.00 3.18
2812 2922 2.290641 TGCTTCAATCGCTTTTCCCCTA 60.291 45.455 0.00 0.00 0.00 3.53
2824 2934 1.869767 CTAGGGCACGATGCTTCAATC 59.130 52.381 9.31 0.00 44.28 2.67
2834 2944 1.732355 TATAGGGGGCTAGGGCACGA 61.732 60.000 0.00 0.00 44.06 4.35
2881 2991 2.553466 GCACCCATACTTTGGTACACCA 60.553 50.000 0.00 0.00 44.83 4.17
2882 2992 2.089201 GCACCCATACTTTGGTACACC 58.911 52.381 0.00 0.00 44.83 4.16
2883 2993 3.067684 AGCACCCATACTTTGGTACAC 57.932 47.619 0.00 0.00 44.83 2.90
2884 2994 3.799432 AAGCACCCATACTTTGGTACA 57.201 42.857 0.00 0.00 44.83 2.90
2885 2995 4.805219 CAAAAGCACCCATACTTTGGTAC 58.195 43.478 0.00 0.00 44.83 3.34
2886 2996 3.257127 GCAAAAGCACCCATACTTTGGTA 59.743 43.478 0.00 0.00 44.83 3.25
2887 2997 2.037121 GCAAAAGCACCCATACTTTGGT 59.963 45.455 0.00 0.00 44.83 3.67
2888 2998 2.036992 TGCAAAAGCACCCATACTTTGG 59.963 45.455 0.00 0.00 46.00 3.28
2889 2999 3.059166 GTGCAAAAGCACCCATACTTTG 58.941 45.455 9.32 0.00 36.28 2.77
2890 3000 3.385193 GTGCAAAAGCACCCATACTTT 57.615 42.857 9.32 0.00 37.71 2.66
2899 3009 1.328279 AGTAAGGGGTGCAAAAGCAC 58.672 50.000 11.87 11.87 39.72 4.40
2900 3010 1.686052 CAAGTAAGGGGTGCAAAAGCA 59.314 47.619 0.00 0.00 0.00 3.91
2901 3011 1.686587 ACAAGTAAGGGGTGCAAAAGC 59.313 47.619 0.00 0.00 0.00 3.51
2902 3012 3.369546 CACAAGTAAGGGGTGCAAAAG 57.630 47.619 0.00 0.00 0.00 2.27
2908 3018 1.202758 TCTGTGCACAAGTAAGGGGTG 60.203 52.381 21.98 5.00 35.68 4.61
2909 3019 1.136828 TCTGTGCACAAGTAAGGGGT 58.863 50.000 21.98 0.00 0.00 4.95
2910 3020 1.523758 GTCTGTGCACAAGTAAGGGG 58.476 55.000 21.98 6.56 0.00 4.79
2911 3021 1.148310 CGTCTGTGCACAAGTAAGGG 58.852 55.000 21.98 7.34 0.00 3.95
2912 3022 1.148310 CCGTCTGTGCACAAGTAAGG 58.852 55.000 21.98 15.99 0.00 2.69
2913 3023 1.792949 GACCGTCTGTGCACAAGTAAG 59.207 52.381 21.98 8.91 0.00 2.34
2914 3024 1.860676 GACCGTCTGTGCACAAGTAA 58.139 50.000 21.98 3.87 0.00 2.24
2915 3025 0.318360 CGACCGTCTGTGCACAAGTA 60.318 55.000 21.98 6.55 0.00 2.24
2916 3026 1.591594 CGACCGTCTGTGCACAAGT 60.592 57.895 21.98 15.28 0.00 3.16
2917 3027 2.943345 GCGACCGTCTGTGCACAAG 61.943 63.158 21.98 14.68 0.00 3.16
2918 3028 2.964925 GCGACCGTCTGTGCACAA 60.965 61.111 21.98 9.23 0.00 3.33
2919 3029 4.214327 TGCGACCGTCTGTGCACA 62.214 61.111 20.37 20.37 31.31 4.57
2920 3030 3.406361 CTGCGACCGTCTGTGCAC 61.406 66.667 10.75 10.75 33.12 4.57
2923 3033 4.662961 TGGCTGCGACCGTCTGTG 62.663 66.667 0.00 0.00 0.00 3.66
2924 3034 4.664677 GTGGCTGCGACCGTCTGT 62.665 66.667 3.14 0.00 0.00 3.41
2930 3040 2.100879 CTATAGGGGTGGCTGCGACC 62.101 65.000 23.69 23.69 0.00 4.79
2931 3041 1.367840 CTATAGGGGTGGCTGCGAC 59.632 63.158 6.21 6.21 0.00 5.19
2932 3042 2.507854 GCTATAGGGGTGGCTGCGA 61.508 63.158 1.04 0.00 0.00 5.10
2933 3043 2.031163 GCTATAGGGGTGGCTGCG 59.969 66.667 1.04 0.00 0.00 5.18
2934 3044 0.536006 CTTGCTATAGGGGTGGCTGC 60.536 60.000 1.04 0.00 0.00 5.25
2935 3045 0.109342 CCTTGCTATAGGGGTGGCTG 59.891 60.000 1.04 0.00 0.00 4.85
2936 3046 1.709994 GCCTTGCTATAGGGGTGGCT 61.710 60.000 1.04 0.00 35.74 4.75
2937 3047 1.228276 GCCTTGCTATAGGGGTGGC 60.228 63.158 1.04 0.00 35.74 5.01
2938 3048 0.846693 AAGCCTTGCTATAGGGGTGG 59.153 55.000 1.04 0.00 38.25 4.61
2939 3049 1.477558 CCAAGCCTTGCTATAGGGGTG 60.478 57.143 0.00 0.00 38.25 4.61
2940 3050 0.846693 CCAAGCCTTGCTATAGGGGT 59.153 55.000 0.00 0.00 38.25 4.95
2941 3051 0.538287 GCCAAGCCTTGCTATAGGGG 60.538 60.000 0.00 0.00 38.25 4.79
2942 3052 0.886490 CGCCAAGCCTTGCTATAGGG 60.886 60.000 0.00 0.00 38.25 3.53
2943 3053 0.106708 TCGCCAAGCCTTGCTATAGG 59.893 55.000 0.00 0.00 38.25 2.57
2944 3054 1.506493 CTCGCCAAGCCTTGCTATAG 58.494 55.000 0.00 0.00 38.25 1.31
2945 3055 0.106708 CCTCGCCAAGCCTTGCTATA 59.893 55.000 0.00 0.00 38.25 1.31
2946 3056 1.153086 CCTCGCCAAGCCTTGCTAT 60.153 57.895 0.00 0.00 38.25 2.97
2947 3057 2.268920 CCTCGCCAAGCCTTGCTA 59.731 61.111 0.00 0.00 38.25 3.49
2950 3060 3.437795 CTGCCTCGCCAAGCCTTG 61.438 66.667 0.00 0.00 0.00 3.61
2951 3061 3.618780 CTCTGCCTCGCCAAGCCTT 62.619 63.158 0.00 0.00 0.00 4.35
2952 3062 4.093291 CTCTGCCTCGCCAAGCCT 62.093 66.667 0.00 0.00 0.00 4.58
2954 3064 3.612247 TTCCTCTGCCTCGCCAAGC 62.612 63.158 0.00 0.00 0.00 4.01
2955 3065 1.449246 CTTCCTCTGCCTCGCCAAG 60.449 63.158 0.00 0.00 0.00 3.61
2956 3066 1.913262 TCTTCCTCTGCCTCGCCAA 60.913 57.895 0.00 0.00 0.00 4.52
2957 3067 2.283894 TCTTCCTCTGCCTCGCCA 60.284 61.111 0.00 0.00 0.00 5.69
2958 3068 2.172483 TTGTCTTCCTCTGCCTCGCC 62.172 60.000 0.00 0.00 0.00 5.54
2959 3069 1.016653 GTTGTCTTCCTCTGCCTCGC 61.017 60.000 0.00 0.00 0.00 5.03
2960 3070 0.318441 TGTTGTCTTCCTCTGCCTCG 59.682 55.000 0.00 0.00 0.00 4.63
2961 3071 1.338579 CCTGTTGTCTTCCTCTGCCTC 60.339 57.143 0.00 0.00 0.00 4.70
2962 3072 0.689623 CCTGTTGTCTTCCTCTGCCT 59.310 55.000 0.00 0.00 0.00 4.75
2963 3073 0.687354 TCCTGTTGTCTTCCTCTGCC 59.313 55.000 0.00 0.00 0.00 4.85
2964 3074 1.338579 CCTCCTGTTGTCTTCCTCTGC 60.339 57.143 0.00 0.00 0.00 4.26
2965 3075 1.338579 GCCTCCTGTTGTCTTCCTCTG 60.339 57.143 0.00 0.00 0.00 3.35
2966 3076 0.980423 GCCTCCTGTTGTCTTCCTCT 59.020 55.000 0.00 0.00 0.00 3.69
2967 3077 0.687354 TGCCTCCTGTTGTCTTCCTC 59.313 55.000 0.00 0.00 0.00 3.71
2968 3078 1.072965 CTTGCCTCCTGTTGTCTTCCT 59.927 52.381 0.00 0.00 0.00 3.36
2969 3079 1.072331 TCTTGCCTCCTGTTGTCTTCC 59.928 52.381 0.00 0.00 0.00 3.46
2970 3080 2.147150 GTCTTGCCTCCTGTTGTCTTC 58.853 52.381 0.00 0.00 0.00 2.87
2971 3081 1.490490 TGTCTTGCCTCCTGTTGTCTT 59.510 47.619 0.00 0.00 0.00 3.01
2972 3082 1.131638 TGTCTTGCCTCCTGTTGTCT 58.868 50.000 0.00 0.00 0.00 3.41
2973 3083 1.876156 CTTGTCTTGCCTCCTGTTGTC 59.124 52.381 0.00 0.00 0.00 3.18
2974 3084 1.490490 TCTTGTCTTGCCTCCTGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
2975 3085 2.260844 TCTTGTCTTGCCTCCTGTTG 57.739 50.000 0.00 0.00 0.00 3.33
2976 3086 2.092429 TGTTCTTGTCTTGCCTCCTGTT 60.092 45.455 0.00 0.00 0.00 3.16
2977 3087 1.490490 TGTTCTTGTCTTGCCTCCTGT 59.510 47.619 0.00 0.00 0.00 4.00
2978 3088 2.260844 TGTTCTTGTCTTGCCTCCTG 57.739 50.000 0.00 0.00 0.00 3.86
2979 3089 3.117888 TCTTTGTTCTTGTCTTGCCTCCT 60.118 43.478 0.00 0.00 0.00 3.69
2980 3090 3.214328 TCTTTGTTCTTGTCTTGCCTCC 58.786 45.455 0.00 0.00 0.00 4.30
2981 3091 4.096382 TGTTCTTTGTTCTTGTCTTGCCTC 59.904 41.667 0.00 0.00 0.00 4.70
2982 3092 4.016444 TGTTCTTTGTTCTTGTCTTGCCT 58.984 39.130 0.00 0.00 0.00 4.75
2983 3093 4.370364 TGTTCTTTGTTCTTGTCTTGCC 57.630 40.909 0.00 0.00 0.00 4.52
2984 3094 5.581605 TGATGTTCTTTGTTCTTGTCTTGC 58.418 37.500 0.00 0.00 0.00 4.01
2985 3095 6.694411 CCTTGATGTTCTTTGTTCTTGTCTTG 59.306 38.462 0.00 0.00 0.00 3.02
2986 3096 6.681368 GCCTTGATGTTCTTTGTTCTTGTCTT 60.681 38.462 0.00 0.00 0.00 3.01
2987 3097 5.221126 GCCTTGATGTTCTTTGTTCTTGTCT 60.221 40.000 0.00 0.00 0.00 3.41
2988 3098 4.978580 GCCTTGATGTTCTTTGTTCTTGTC 59.021 41.667 0.00 0.00 0.00 3.18
2989 3099 4.402155 TGCCTTGATGTTCTTTGTTCTTGT 59.598 37.500 0.00 0.00 0.00 3.16
2990 3100 4.935702 TGCCTTGATGTTCTTTGTTCTTG 58.064 39.130 0.00 0.00 0.00 3.02
2991 3101 5.127682 ACTTGCCTTGATGTTCTTTGTTCTT 59.872 36.000 0.00 0.00 0.00 2.52
2992 3102 4.646492 ACTTGCCTTGATGTTCTTTGTTCT 59.354 37.500 0.00 0.00 0.00 3.01
2993 3103 4.741676 CACTTGCCTTGATGTTCTTTGTTC 59.258 41.667 0.00 0.00 0.00 3.18
2994 3104 4.685924 CACTTGCCTTGATGTTCTTTGTT 58.314 39.130 0.00 0.00 0.00 2.83
2995 3105 3.491447 GCACTTGCCTTGATGTTCTTTGT 60.491 43.478 0.00 0.00 34.31 2.83
2996 3106 3.054878 GCACTTGCCTTGATGTTCTTTG 58.945 45.455 0.00 0.00 34.31 2.77
2997 3107 2.961062 AGCACTTGCCTTGATGTTCTTT 59.039 40.909 0.00 0.00 43.38 2.52
2998 3108 2.555757 GAGCACTTGCCTTGATGTTCTT 59.444 45.455 0.00 0.00 43.38 2.52
2999 3109 2.157738 GAGCACTTGCCTTGATGTTCT 58.842 47.619 0.00 0.00 43.38 3.01
3000 3110 1.881973 TGAGCACTTGCCTTGATGTTC 59.118 47.619 0.00 0.00 43.38 3.18
3001 3111 1.884579 CTGAGCACTTGCCTTGATGTT 59.115 47.619 0.00 0.00 43.38 2.71
3002 3112 1.072806 TCTGAGCACTTGCCTTGATGT 59.927 47.619 0.00 0.00 43.38 3.06
3003 3113 1.738350 CTCTGAGCACTTGCCTTGATG 59.262 52.381 0.00 0.00 43.38 3.07
3004 3114 1.350351 ACTCTGAGCACTTGCCTTGAT 59.650 47.619 4.19 0.00 43.38 2.57
3005 3115 0.761187 ACTCTGAGCACTTGCCTTGA 59.239 50.000 4.19 0.00 43.38 3.02
3006 3116 2.344950 CTACTCTGAGCACTTGCCTTG 58.655 52.381 4.19 0.00 43.38 3.61
3007 3117 1.338579 GCTACTCTGAGCACTTGCCTT 60.339 52.381 4.19 0.00 42.36 4.35
3008 3118 0.248843 GCTACTCTGAGCACTTGCCT 59.751 55.000 4.19 0.00 42.36 4.75
3009 3119 2.761071 GCTACTCTGAGCACTTGCC 58.239 57.895 4.19 0.00 42.36 4.52
3016 3126 0.390866 TGCTGCTTGCTACTCTGAGC 60.391 55.000 4.19 0.00 43.37 4.26
3017 3127 2.001159 CTTGCTGCTTGCTACTCTGAG 58.999 52.381 2.45 2.45 43.37 3.35
3018 3128 1.620323 TCTTGCTGCTTGCTACTCTGA 59.380 47.619 0.00 0.00 43.37 3.27
3019 3129 2.001159 CTCTTGCTGCTTGCTACTCTG 58.999 52.381 0.00 0.00 43.37 3.35
3020 3130 1.066286 CCTCTTGCTGCTTGCTACTCT 60.066 52.381 0.00 0.00 43.37 3.24
3021 3131 1.367659 CCTCTTGCTGCTTGCTACTC 58.632 55.000 0.00 0.00 43.37 2.59
3022 3132 0.676151 GCCTCTTGCTGCTTGCTACT 60.676 55.000 0.00 0.00 43.37 2.57
3023 3133 0.957395 TGCCTCTTGCTGCTTGCTAC 60.957 55.000 0.00 0.00 43.37 3.58
3024 3134 0.250858 TTGCCTCTTGCTGCTTGCTA 60.251 50.000 0.00 0.00 43.37 3.49
3025 3135 1.524863 CTTGCCTCTTGCTGCTTGCT 61.525 55.000 0.00 0.00 43.37 3.91
3026 3136 1.080705 CTTGCCTCTTGCTGCTTGC 60.081 57.895 0.00 0.00 42.00 4.01
3027 3137 1.080705 GCTTGCCTCTTGCTGCTTG 60.081 57.895 0.00 0.00 42.00 4.01
3028 3138 1.524863 CTGCTTGCCTCTTGCTGCTT 61.525 55.000 0.00 0.00 42.00 3.91
3029 3139 1.972223 CTGCTTGCCTCTTGCTGCT 60.972 57.895 0.00 0.00 42.00 4.24
3030 3140 2.567049 CTGCTTGCCTCTTGCTGC 59.433 61.111 0.00 0.00 42.00 5.25
3031 3141 2.341101 CCCTGCTTGCCTCTTGCTG 61.341 63.158 0.00 0.00 42.00 4.41
3032 3142 2.035312 CCCTGCTTGCCTCTTGCT 59.965 61.111 0.00 0.00 42.00 3.91
3033 3143 3.756727 GCCCTGCTTGCCTCTTGC 61.757 66.667 0.00 0.00 41.77 4.01
3034 3144 3.066814 GGCCCTGCTTGCCTCTTG 61.067 66.667 0.00 0.00 45.70 3.02
3050 3160 4.440127 GCTTGTTGCCGGGCATGG 62.440 66.667 24.49 13.69 38.76 3.66
3060 3170 1.372128 GCTTCGGCAAGGCTTGTTG 60.372 57.895 26.71 19.19 41.33 3.33
3061 3171 2.908073 CGCTTCGGCAAGGCTTGTT 61.908 57.895 26.71 0.00 41.88 2.83
3062 3172 3.357079 CGCTTCGGCAAGGCTTGT 61.357 61.111 26.71 0.00 41.88 3.16
3063 3173 3.049674 TCGCTTCGGCAAGGCTTG 61.050 61.111 22.75 22.75 41.88 4.01
3064 3174 3.050275 GTCGCTTCGGCAAGGCTT 61.050 61.111 0.00 0.00 41.88 4.35
3067 3177 3.121030 CAGGTCGCTTCGGCAAGG 61.121 66.667 0.00 0.00 41.88 3.61
3068 3178 3.793144 GCAGGTCGCTTCGGCAAG 61.793 66.667 0.00 0.00 41.88 4.01
3089 3199 4.295199 AAGGGGTTTGTCGGGGGC 62.295 66.667 0.00 0.00 0.00 5.80
3090 3200 2.282887 CAAGGGGTTTGTCGGGGG 60.283 66.667 0.00 0.00 31.92 5.40
3091 3201 2.989253 GCAAGGGGTTTGTCGGGG 60.989 66.667 0.00 0.00 39.08 5.73
3092 3202 2.989253 GGCAAGGGGTTTGTCGGG 60.989 66.667 0.00 0.00 39.08 5.14
3093 3203 2.203422 TGGCAAGGGGTTTGTCGG 60.203 61.111 0.00 0.00 44.47 4.79
3094 3204 2.268076 CCTGGCAAGGGGTTTGTCG 61.268 63.158 0.00 0.00 44.47 4.35
3095 3205 3.777556 CCTGGCAAGGGGTTTGTC 58.222 61.111 0.00 0.00 41.84 3.18
3103 3213 2.048603 GCAAGCTACCCTGGCAAGG 61.049 63.158 0.00 0.00 40.46 3.61
3104 3214 3.595819 GCAAGCTACCCTGGCAAG 58.404 61.111 0.00 0.00 40.46 4.01
3107 3217 0.609131 TCTTTGCAAGCTACCCTGGC 60.609 55.000 0.00 0.00 41.18 4.85
3108 3218 1.003580 TCTCTTTGCAAGCTACCCTGG 59.996 52.381 0.00 0.00 0.00 4.45
3109 3219 2.079925 GTCTCTTTGCAAGCTACCCTG 58.920 52.381 0.00 0.00 0.00 4.45
3110 3220 1.003696 GGTCTCTTTGCAAGCTACCCT 59.996 52.381 0.00 0.00 30.96 4.34
3111 3221 1.271379 TGGTCTCTTTGCAAGCTACCC 60.271 52.381 15.50 8.89 34.18 3.69
3112 3222 2.079925 CTGGTCTCTTTGCAAGCTACC 58.920 52.381 12.75 12.75 35.09 3.18
3113 3223 1.466558 GCTGGTCTCTTTGCAAGCTAC 59.533 52.381 0.00 0.00 0.00 3.58
3114 3224 1.072173 TGCTGGTCTCTTTGCAAGCTA 59.928 47.619 0.00 0.00 32.12 3.32
3115 3225 0.179009 TGCTGGTCTCTTTGCAAGCT 60.179 50.000 0.00 0.00 32.12 3.74
3116 3226 0.670162 TTGCTGGTCTCTTTGCAAGC 59.330 50.000 0.00 0.00 39.98 4.01
3118 3228 1.321474 CCTTGCTGGTCTCTTTGCAA 58.679 50.000 0.00 0.00 42.16 4.08
3119 3229 1.174712 GCCTTGCTGGTCTCTTTGCA 61.175 55.000 0.00 0.00 38.35 4.08
3120 3230 1.583477 GCCTTGCTGGTCTCTTTGC 59.417 57.895 0.00 0.00 38.35 3.68
3121 3231 0.538057 TGGCCTTGCTGGTCTCTTTG 60.538 55.000 3.32 0.00 42.07 2.77
3122 3232 0.538287 GTGGCCTTGCTGGTCTCTTT 60.538 55.000 3.32 0.00 42.07 2.52
3123 3233 1.073897 GTGGCCTTGCTGGTCTCTT 59.926 57.895 3.32 0.00 42.07 2.85
3124 3234 2.753029 GTGGCCTTGCTGGTCTCT 59.247 61.111 3.32 0.00 42.07 3.10
3125 3235 2.360475 GGTGGCCTTGCTGGTCTC 60.360 66.667 3.32 0.00 42.07 3.36
3126 3236 3.177884 TGGTGGCCTTGCTGGTCT 61.178 61.111 3.32 0.00 42.07 3.85
3127 3237 2.985847 GTGGTGGCCTTGCTGGTC 60.986 66.667 3.32 0.00 41.87 4.02
3128 3238 4.603535 GGTGGTGGCCTTGCTGGT 62.604 66.667 3.32 0.00 38.35 4.00
3138 3248 4.722700 CTCAAGCCCGGGTGGTGG 62.723 72.222 24.63 4.89 36.04 4.61
3139 3249 3.612247 CTCTCAAGCCCGGGTGGTG 62.612 68.421 24.63 17.53 36.04 4.17
3140 3250 3.322466 CTCTCAAGCCCGGGTGGT 61.322 66.667 24.63 3.99 36.04 4.16
3141 3251 4.785453 GCTCTCAAGCCCGGGTGG 62.785 72.222 24.63 12.24 43.10 4.61
3150 3260 2.469274 ATGGTGTCACAGCTCTCAAG 57.531 50.000 8.76 0.00 32.61 3.02
3151 3261 3.056536 GTCTATGGTGTCACAGCTCTCAA 60.057 47.826 8.76 0.00 32.61 3.02
3152 3262 2.493675 GTCTATGGTGTCACAGCTCTCA 59.506 50.000 8.76 0.00 32.61 3.27
3153 3263 2.493675 TGTCTATGGTGTCACAGCTCTC 59.506 50.000 8.76 0.00 32.61 3.20
3154 3264 2.529632 TGTCTATGGTGTCACAGCTCT 58.470 47.619 8.76 0.00 32.61 4.09
3155 3265 3.319137 TTGTCTATGGTGTCACAGCTC 57.681 47.619 8.76 0.00 32.61 4.09
3156 3266 3.008375 ACATTGTCTATGGTGTCACAGCT 59.992 43.478 8.76 0.00 38.64 4.24
3157 3267 3.338249 ACATTGTCTATGGTGTCACAGC 58.662 45.455 5.12 0.00 38.64 4.40
3158 3268 7.387673 TCTTTAACATTGTCTATGGTGTCACAG 59.612 37.037 5.12 0.00 38.64 3.66
3159 3269 7.172532 GTCTTTAACATTGTCTATGGTGTCACA 59.827 37.037 5.12 0.00 38.64 3.58
3160 3270 7.360946 GGTCTTTAACATTGTCTATGGTGTCAC 60.361 40.741 0.00 0.00 38.64 3.67
3161 3271 6.653320 GGTCTTTAACATTGTCTATGGTGTCA 59.347 38.462 0.00 0.00 38.64 3.58
3162 3272 6.653320 TGGTCTTTAACATTGTCTATGGTGTC 59.347 38.462 0.00 0.00 38.64 3.67
3163 3273 6.539173 TGGTCTTTAACATTGTCTATGGTGT 58.461 36.000 0.00 0.00 38.64 4.16
3164 3274 6.094048 CCTGGTCTTTAACATTGTCTATGGTG 59.906 42.308 0.00 0.00 38.64 4.17
3165 3275 6.012858 TCCTGGTCTTTAACATTGTCTATGGT 60.013 38.462 0.00 0.00 38.64 3.55
3166 3276 6.414732 TCCTGGTCTTTAACATTGTCTATGG 58.585 40.000 0.00 0.00 38.64 2.74
3167 3277 8.511604 AATCCTGGTCTTTAACATTGTCTATG 57.488 34.615 0.00 0.00 40.26 2.23
3168 3278 8.960591 CAAATCCTGGTCTTTAACATTGTCTAT 58.039 33.333 0.00 0.00 0.00 1.98
3169 3279 8.160765 TCAAATCCTGGTCTTTAACATTGTCTA 58.839 33.333 0.00 0.00 0.00 2.59
3170 3280 7.004086 TCAAATCCTGGTCTTTAACATTGTCT 58.996 34.615 0.00 0.00 0.00 3.41
3171 3281 7.214467 TCAAATCCTGGTCTTTAACATTGTC 57.786 36.000 0.00 0.00 0.00 3.18
3172 3282 7.505585 TCTTCAAATCCTGGTCTTTAACATTGT 59.494 33.333 0.00 0.00 0.00 2.71
3173 3283 7.885297 TCTTCAAATCCTGGTCTTTAACATTG 58.115 34.615 0.00 0.00 0.00 2.82
3174 3284 7.309438 GCTCTTCAAATCCTGGTCTTTAACATT 60.309 37.037 0.00 0.00 0.00 2.71
3175 3285 6.151817 GCTCTTCAAATCCTGGTCTTTAACAT 59.848 38.462 0.00 0.00 0.00 2.71
3176 3286 5.473504 GCTCTTCAAATCCTGGTCTTTAACA 59.526 40.000 0.00 0.00 0.00 2.41
3177 3287 5.473504 TGCTCTTCAAATCCTGGTCTTTAAC 59.526 40.000 0.00 0.00 0.00 2.01
3178 3288 5.473504 GTGCTCTTCAAATCCTGGTCTTTAA 59.526 40.000 0.00 0.00 0.00 1.52
3179 3289 5.003804 GTGCTCTTCAAATCCTGGTCTTTA 58.996 41.667 0.00 0.00 0.00 1.85
3180 3290 3.823304 GTGCTCTTCAAATCCTGGTCTTT 59.177 43.478 0.00 0.00 0.00 2.52
3181 3291 3.181440 TGTGCTCTTCAAATCCTGGTCTT 60.181 43.478 0.00 0.00 0.00 3.01
3182 3292 2.373169 TGTGCTCTTCAAATCCTGGTCT 59.627 45.455 0.00 0.00 0.00 3.85
3183 3293 2.783135 TGTGCTCTTCAAATCCTGGTC 58.217 47.619 0.00 0.00 0.00 4.02
3184 3294 2.957402 TGTGCTCTTCAAATCCTGGT 57.043 45.000 0.00 0.00 0.00 4.00
3185 3295 2.159282 GCATGTGCTCTTCAAATCCTGG 60.159 50.000 0.00 0.00 38.21 4.45
3186 3296 2.159282 GGCATGTGCTCTTCAAATCCTG 60.159 50.000 4.84 0.00 41.70 3.86
3187 3297 2.097825 GGCATGTGCTCTTCAAATCCT 58.902 47.619 4.84 0.00 41.70 3.24
3188 3298 2.097825 AGGCATGTGCTCTTCAAATCC 58.902 47.619 4.84 0.00 41.70 3.01
3189 3299 2.223203 CGAGGCATGTGCTCTTCAAATC 60.223 50.000 4.84 0.00 41.70 2.17
3190 3300 1.741706 CGAGGCATGTGCTCTTCAAAT 59.258 47.619 4.84 0.00 41.70 2.32
3191 3301 1.159285 CGAGGCATGTGCTCTTCAAA 58.841 50.000 4.84 0.00 41.70 2.69
3192 3302 0.035317 ACGAGGCATGTGCTCTTCAA 59.965 50.000 4.84 0.00 41.70 2.69
3193 3303 0.894835 TACGAGGCATGTGCTCTTCA 59.105 50.000 4.84 0.00 41.70 3.02
3194 3304 1.565305 CTACGAGGCATGTGCTCTTC 58.435 55.000 4.84 0.69 41.70 2.87
3195 3305 0.460987 GCTACGAGGCATGTGCTCTT 60.461 55.000 4.84 0.00 41.70 2.85
3196 3306 1.142748 GCTACGAGGCATGTGCTCT 59.857 57.895 4.84 0.56 41.70 4.09
3197 3307 1.153568 TGCTACGAGGCATGTGCTC 60.154 57.895 4.84 0.42 41.70 4.26
3198 3308 2.981302 TGCTACGAGGCATGTGCT 59.019 55.556 4.84 0.00 41.70 4.40
3204 3314 2.512286 GCTGCATGCTACGAGGCA 60.512 61.111 20.33 9.11 46.63 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.