Multiple sequence alignment - TraesCS3B01G406200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G406200 chr3B 100.000 4667 0 0 1 4667 641801961 641806627 0.000000e+00 8619.0
1 TraesCS3B01G406200 chr3B 74.715 965 202 32 2538 3478 448577920 448576974 4.380000e-105 392.0
2 TraesCS3B01G406200 chr3B 90.566 53 3 1 1672 1722 641802982 641803034 8.380000e-08 69.4
3 TraesCS3B01G406200 chr3B 90.566 53 3 1 1022 1074 641803632 641803682 8.380000e-08 69.4
4 TraesCS3B01G406200 chr3D 86.022 4557 333 124 288 4667 480966955 480971384 0.000000e+00 4606.0
5 TraesCS3B01G406200 chr3D 74.922 961 207 29 2538 3478 349642848 349641902 4.350000e-110 409.0
6 TraesCS3B01G406200 chr3D 79.412 136 16 7 976 1102 480968293 480968425 8.320000e-13 86.1
7 TraesCS3B01G406200 chr3A 88.328 2536 167 48 1397 3838 623775647 623778147 0.000000e+00 2924.0
8 TraesCS3B01G406200 chr3A 84.754 833 56 35 3869 4667 623778147 623778942 0.000000e+00 769.0
9 TraesCS3B01G406200 chr3A 79.824 1021 103 59 196 1175 623774693 623775651 0.000000e+00 649.0
10 TraesCS3B01G406200 chr3A 92.157 51 1 2 1675 1722 623775495 623775545 8.380000e-08 69.4
11 TraesCS3B01G406200 chr1D 80.230 956 166 12 2534 3479 371742505 371741563 0.000000e+00 697.0
12 TraesCS3B01G406200 chr1D 75.519 241 53 5 3242 3479 37437979 37437742 3.820000e-21 113.0
13 TraesCS3B01G406200 chr1B 79.812 956 170 13 2534 3479 496505838 496504896 0.000000e+00 675.0
14 TraesCS3B01G406200 chr1B 75.732 239 56 2 3242 3479 57023659 57023422 8.200000e-23 119.0
15 TraesCS3B01G406200 chr2A 75.574 958 205 21 2538 3479 507388961 507389905 3.310000e-121 446.0
16 TraesCS3B01G406200 chr4D 79.608 255 42 9 3236 3485 384670929 384671178 1.730000e-39 174.0
17 TraesCS3B01G406200 chr4B 79.608 255 42 9 3236 3485 471653269 471653518 1.730000e-39 174.0
18 TraesCS3B01G406200 chr4A 79.608 255 42 9 3236 3485 66339043 66339292 1.730000e-39 174.0
19 TraesCS3B01G406200 chr1A 70.612 735 171 34 2778 3479 31895185 31895907 8.200000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G406200 chr3B 641801961 641806627 4666 False 2919.266667 8619 93.710667 1 4667 3 chr3B.!!$F1 4666
1 TraesCS3B01G406200 chr3B 448576974 448577920 946 True 392.000000 392 74.715000 2538 3478 1 chr3B.!!$R1 940
2 TraesCS3B01G406200 chr3D 480966955 480971384 4429 False 2346.050000 4606 82.717000 288 4667 2 chr3D.!!$F1 4379
3 TraesCS3B01G406200 chr3D 349641902 349642848 946 True 409.000000 409 74.922000 2538 3478 1 chr3D.!!$R1 940
4 TraesCS3B01G406200 chr3A 623774693 623778942 4249 False 1102.850000 2924 86.265750 196 4667 4 chr3A.!!$F1 4471
5 TraesCS3B01G406200 chr1D 371741563 371742505 942 True 697.000000 697 80.230000 2534 3479 1 chr1D.!!$R2 945
6 TraesCS3B01G406200 chr1B 496504896 496505838 942 True 675.000000 675 79.812000 2534 3479 1 chr1B.!!$R2 945
7 TraesCS3B01G406200 chr2A 507388961 507389905 944 False 446.000000 446 75.574000 2538 3479 1 chr2A.!!$F1 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.035439 CCTGAAATGGTACCACGCCT 60.035 55.0 19.09 0.00 0.00 5.52 F
70 71 0.107361 AAATGGTACCACGCCTAGGC 60.107 55.0 24.75 24.75 37.85 3.93 F
950 1003 0.179092 ATACTTAACCGCCCGAGCAC 60.179 55.0 0.00 0.00 39.83 4.40 F
1436 1541 0.258774 ACTGCCGCCCAAATATTCCT 59.741 50.0 0.00 0.00 0.00 3.36 F
1487 1601 0.390124 TGTGGTTAGACACGGACACC 59.610 55.0 0.00 0.00 44.21 4.16 F
1620 1763 0.597118 GCCGAGAGCAGAGCATACAG 60.597 60.0 0.00 0.00 42.97 2.74 F
2276 2479 0.673333 CACCTGACCGCAACTGCATA 60.673 55.0 2.12 0.00 42.21 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1521 0.385390 GGAATATTTGGGCGGCAGTG 59.615 55.000 12.47 0.0 0.0 3.66 R
1634 1777 0.447801 GACGCGATGCTCCATTGTTT 59.552 50.000 15.93 0.0 0.0 2.83 R
2473 2684 1.135083 CGAGGTTAACAGTGCGAGGAT 60.135 52.381 8.10 0.0 0.0 3.24 R
2601 2812 1.225376 TGTTGACGTTCATGGACCGC 61.225 55.000 0.00 0.0 0.0 5.68 R
2787 3001 1.889105 GATGATGCCGGTGATGCGT 60.889 57.895 1.90 0.0 0.0 5.24 R
3531 3760 2.524887 AACCTCCCCACCGACGAA 60.525 61.111 0.00 0.0 0.0 3.85 R
4266 4530 0.671781 CGGCCAAGACAACTCAGAGG 60.672 60.000 2.24 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.591429 CCATGCTATTGCCGCCGA 60.591 61.111 0.00 0.00 38.71 5.54
18 19 2.633657 CATGCTATTGCCGCCGAC 59.366 61.111 0.00 0.00 38.71 4.79
19 20 2.591715 ATGCTATTGCCGCCGACC 60.592 61.111 0.00 0.00 38.71 4.79
20 21 3.399105 ATGCTATTGCCGCCGACCA 62.399 57.895 0.00 0.00 38.71 4.02
21 22 3.573491 GCTATTGCCGCCGACCAC 61.573 66.667 0.00 0.00 0.00 4.16
22 23 2.125310 CTATTGCCGCCGACCACA 60.125 61.111 0.00 0.00 0.00 4.17
23 24 2.435234 TATTGCCGCCGACCACAC 60.435 61.111 0.00 0.00 0.00 3.82
24 25 3.961838 TATTGCCGCCGACCACACC 62.962 63.158 0.00 0.00 0.00 4.16
28 29 3.656045 CCGCCGACCACACCAAAC 61.656 66.667 0.00 0.00 0.00 2.93
29 30 2.897846 CGCCGACCACACCAAACA 60.898 61.111 0.00 0.00 0.00 2.83
30 31 2.719354 GCCGACCACACCAAACAC 59.281 61.111 0.00 0.00 0.00 3.32
31 32 2.115911 GCCGACCACACCAAACACA 61.116 57.895 0.00 0.00 0.00 3.72
32 33 1.452145 GCCGACCACACCAAACACAT 61.452 55.000 0.00 0.00 0.00 3.21
33 34 1.885560 CCGACCACACCAAACACATA 58.114 50.000 0.00 0.00 0.00 2.29
34 35 1.533731 CCGACCACACCAAACACATAC 59.466 52.381 0.00 0.00 0.00 2.39
35 36 1.533731 CGACCACACCAAACACATACC 59.466 52.381 0.00 0.00 0.00 2.73
36 37 1.533731 GACCACACCAAACACATACCG 59.466 52.381 0.00 0.00 0.00 4.02
37 38 1.134037 ACCACACCAAACACATACCGT 60.134 47.619 0.00 0.00 0.00 4.83
38 39 1.533731 CCACACCAAACACATACCGTC 59.466 52.381 0.00 0.00 0.00 4.79
39 40 1.193650 CACACCAAACACATACCGTCG 59.806 52.381 0.00 0.00 0.00 5.12
40 41 0.793861 CACCAAACACATACCGTCGG 59.206 55.000 10.48 10.48 0.00 4.79
41 42 0.680618 ACCAAACACATACCGTCGGA 59.319 50.000 20.51 1.60 0.00 4.55
42 43 1.070445 ACCAAACACATACCGTCGGAA 59.930 47.619 20.51 0.00 0.00 4.30
43 44 1.461897 CCAAACACATACCGTCGGAAC 59.538 52.381 20.51 0.00 0.00 3.62
44 45 2.409975 CAAACACATACCGTCGGAACT 58.590 47.619 20.51 0.00 0.00 3.01
45 46 2.803956 CAAACACATACCGTCGGAACTT 59.196 45.455 20.51 0.00 0.00 2.66
46 47 2.074547 ACACATACCGTCGGAACTTG 57.925 50.000 20.51 11.74 0.00 3.16
47 48 0.719465 CACATACCGTCGGAACTTGC 59.281 55.000 20.51 0.00 0.00 4.01
48 49 0.390735 ACATACCGTCGGAACTTGCC 60.391 55.000 20.51 0.00 0.00 4.52
49 50 0.108329 CATACCGTCGGAACTTGCCT 60.108 55.000 20.51 0.00 0.00 4.75
50 51 0.108329 ATACCGTCGGAACTTGCCTG 60.108 55.000 20.51 0.00 0.00 4.85
51 52 1.180456 TACCGTCGGAACTTGCCTGA 61.180 55.000 20.51 0.00 0.00 3.86
52 53 1.301401 CCGTCGGAACTTGCCTGAA 60.301 57.895 4.91 0.00 0.00 3.02
53 54 0.882927 CCGTCGGAACTTGCCTGAAA 60.883 55.000 4.91 0.00 0.00 2.69
54 55 1.156736 CGTCGGAACTTGCCTGAAAT 58.843 50.000 0.00 0.00 0.00 2.17
55 56 1.135972 CGTCGGAACTTGCCTGAAATG 60.136 52.381 0.00 0.00 0.00 2.32
56 57 1.200020 GTCGGAACTTGCCTGAAATGG 59.800 52.381 0.00 0.00 0.00 3.16
57 58 1.202879 TCGGAACTTGCCTGAAATGGT 60.203 47.619 0.00 0.00 0.00 3.55
58 59 2.039216 TCGGAACTTGCCTGAAATGGTA 59.961 45.455 0.00 0.00 0.00 3.25
59 60 2.161609 CGGAACTTGCCTGAAATGGTAC 59.838 50.000 0.00 0.00 0.00 3.34
60 61 2.492088 GGAACTTGCCTGAAATGGTACC 59.508 50.000 4.43 4.43 0.00 3.34
61 62 2.969821 ACTTGCCTGAAATGGTACCA 57.030 45.000 18.99 18.99 0.00 3.25
62 63 2.514803 ACTTGCCTGAAATGGTACCAC 58.485 47.619 19.09 5.26 0.00 4.16
63 64 1.468520 CTTGCCTGAAATGGTACCACG 59.531 52.381 19.09 3.43 0.00 4.94
64 65 0.958382 TGCCTGAAATGGTACCACGC 60.958 55.000 19.09 12.22 0.00 5.34
65 66 1.654023 GCCTGAAATGGTACCACGCC 61.654 60.000 19.09 9.46 0.00 5.68
66 67 0.035439 CCTGAAATGGTACCACGCCT 60.035 55.000 19.09 0.00 0.00 5.52
67 68 1.208535 CCTGAAATGGTACCACGCCTA 59.791 52.381 19.09 2.07 0.00 3.93
68 69 2.550978 CTGAAATGGTACCACGCCTAG 58.449 52.381 19.09 8.58 0.00 3.02
69 70 1.208535 TGAAATGGTACCACGCCTAGG 59.791 52.381 19.09 3.67 0.00 3.02
70 71 0.107361 AAATGGTACCACGCCTAGGC 60.107 55.000 24.75 24.75 37.85 3.93
81 82 3.217017 CCTAGGCGGCGACAGCTA 61.217 66.667 18.30 0.00 44.37 3.32
82 83 2.333225 CTAGGCGGCGACAGCTAG 59.667 66.667 18.30 3.91 44.37 3.42
83 84 3.832720 CTAGGCGGCGACAGCTAGC 62.833 68.421 18.30 6.62 44.37 3.42
90 91 4.135153 CGACAGCTAGCCGTGCCT 62.135 66.667 8.68 0.00 0.00 4.75
91 92 2.771639 CGACAGCTAGCCGTGCCTA 61.772 63.158 8.68 0.00 0.00 3.93
92 93 1.066587 GACAGCTAGCCGTGCCTAG 59.933 63.158 8.68 0.00 38.24 3.02
93 94 1.379977 ACAGCTAGCCGTGCCTAGA 60.380 57.895 12.13 0.00 37.57 2.43
94 95 0.970937 ACAGCTAGCCGTGCCTAGAA 60.971 55.000 12.13 0.00 37.57 2.10
95 96 0.528684 CAGCTAGCCGTGCCTAGAAC 60.529 60.000 12.13 0.00 37.57 3.01
96 97 1.589196 GCTAGCCGTGCCTAGAACG 60.589 63.158 2.29 10.06 37.57 3.95
103 104 2.304751 CGTGCCTAGAACGGGTTATT 57.695 50.000 9.36 0.00 37.39 1.40
104 105 2.199236 CGTGCCTAGAACGGGTTATTC 58.801 52.381 9.36 0.00 37.39 1.75
105 106 2.558378 GTGCCTAGAACGGGTTATTCC 58.442 52.381 0.00 0.00 0.00 3.01
106 107 2.093341 GTGCCTAGAACGGGTTATTCCA 60.093 50.000 0.00 0.00 38.11 3.53
107 108 2.775384 TGCCTAGAACGGGTTATTCCAT 59.225 45.455 0.00 0.00 38.11 3.41
108 109 3.201266 TGCCTAGAACGGGTTATTCCATT 59.799 43.478 0.00 0.00 38.11 3.16
109 110 3.564225 GCCTAGAACGGGTTATTCCATTG 59.436 47.826 0.00 0.00 38.11 2.82
110 111 4.777463 CCTAGAACGGGTTATTCCATTGT 58.223 43.478 0.00 0.00 38.11 2.71
111 112 4.814771 CCTAGAACGGGTTATTCCATTGTC 59.185 45.833 0.00 0.00 38.11 3.18
112 113 3.267483 AGAACGGGTTATTCCATTGTCG 58.733 45.455 0.00 0.00 38.11 4.35
113 114 2.773993 ACGGGTTATTCCATTGTCGT 57.226 45.000 0.00 0.00 38.11 4.34
114 115 2.352388 ACGGGTTATTCCATTGTCGTG 58.648 47.619 0.00 0.00 38.11 4.35
115 116 1.063469 CGGGTTATTCCATTGTCGTGC 59.937 52.381 0.00 0.00 38.11 5.34
116 117 2.088423 GGGTTATTCCATTGTCGTGCA 58.912 47.619 0.00 0.00 38.11 4.57
117 118 2.490115 GGGTTATTCCATTGTCGTGCAA 59.510 45.455 0.00 0.00 41.89 4.08
118 119 3.498082 GGTTATTCCATTGTCGTGCAAC 58.502 45.455 0.00 0.00 40.28 4.17
119 120 3.498082 GTTATTCCATTGTCGTGCAACC 58.502 45.455 0.00 0.00 40.28 3.77
120 121 1.614996 ATTCCATTGTCGTGCAACCA 58.385 45.000 0.00 0.00 40.28 3.67
121 122 0.950836 TTCCATTGTCGTGCAACCAG 59.049 50.000 0.00 0.00 40.28 4.00
122 123 1.081242 CCATTGTCGTGCAACCAGC 60.081 57.895 0.00 0.00 40.28 4.85
123 124 1.081242 CATTGTCGTGCAACCAGCC 60.081 57.895 0.00 0.00 44.83 4.85
124 125 1.528076 ATTGTCGTGCAACCAGCCA 60.528 52.632 0.00 0.00 44.83 4.75
125 126 1.518056 ATTGTCGTGCAACCAGCCAG 61.518 55.000 0.00 0.00 44.83 4.85
126 127 3.357079 GTCGTGCAACCAGCCAGG 61.357 66.667 0.00 0.00 44.83 4.45
142 143 3.579685 GGTCGAGCCTTTGCCTTC 58.420 61.111 2.39 0.00 38.69 3.46
143 144 1.302511 GGTCGAGCCTTTGCCTTCA 60.303 57.895 2.39 0.00 38.69 3.02
144 145 0.678048 GGTCGAGCCTTTGCCTTCAT 60.678 55.000 2.39 0.00 38.69 2.57
145 146 1.168714 GTCGAGCCTTTGCCTTCATT 58.831 50.000 0.00 0.00 38.69 2.57
146 147 1.135575 GTCGAGCCTTTGCCTTCATTG 60.136 52.381 0.00 0.00 38.69 2.82
147 148 1.167851 CGAGCCTTTGCCTTCATTGA 58.832 50.000 0.00 0.00 38.69 2.57
148 149 1.541147 CGAGCCTTTGCCTTCATTGAA 59.459 47.619 0.00 0.00 38.69 2.69
149 150 2.669391 CGAGCCTTTGCCTTCATTGAAC 60.669 50.000 0.00 0.00 38.69 3.18
150 151 2.560105 GAGCCTTTGCCTTCATTGAACT 59.440 45.455 0.00 0.00 38.69 3.01
151 152 2.967887 AGCCTTTGCCTTCATTGAACTT 59.032 40.909 0.00 0.00 38.69 2.66
152 153 3.062042 GCCTTTGCCTTCATTGAACTTG 58.938 45.455 0.00 0.00 0.00 3.16
153 154 3.243839 GCCTTTGCCTTCATTGAACTTGA 60.244 43.478 0.00 0.00 0.00 3.02
154 155 4.301628 CCTTTGCCTTCATTGAACTTGAC 58.698 43.478 0.00 0.00 0.00 3.18
155 156 4.202141 CCTTTGCCTTCATTGAACTTGACA 60.202 41.667 0.00 0.00 0.00 3.58
156 157 4.572985 TTGCCTTCATTGAACTTGACAG 57.427 40.909 0.00 0.00 0.00 3.51
157 158 2.886523 TGCCTTCATTGAACTTGACAGG 59.113 45.455 0.00 0.00 0.00 4.00
158 159 2.887152 GCCTTCATTGAACTTGACAGGT 59.113 45.455 0.00 0.00 0.00 4.00
159 160 3.057946 GCCTTCATTGAACTTGACAGGTC 60.058 47.826 0.00 0.00 37.24 3.85
160 161 3.187227 CCTTCATTGAACTTGACAGGTCG 59.813 47.826 0.00 0.00 40.03 4.79
161 162 3.744238 TCATTGAACTTGACAGGTCGA 57.256 42.857 0.00 0.00 40.03 4.20
162 163 4.066646 TCATTGAACTTGACAGGTCGAA 57.933 40.909 0.00 0.00 40.03 3.71
163 164 4.058124 TCATTGAACTTGACAGGTCGAAG 58.942 43.478 0.00 8.87 40.03 3.79
164 165 3.812156 TTGAACTTGACAGGTCGAAGA 57.188 42.857 14.30 0.00 40.03 2.87
165 166 3.371102 TGAACTTGACAGGTCGAAGAG 57.629 47.619 14.30 5.15 40.03 2.85
178 179 4.103365 GTCGAAGAGCTGAGATTTCTGA 57.897 45.455 0.00 0.00 36.95 3.27
179 180 4.104776 GTCGAAGAGCTGAGATTTCTGAG 58.895 47.826 0.00 0.00 36.95 3.35
180 181 4.013050 TCGAAGAGCTGAGATTTCTGAGA 58.987 43.478 0.00 0.00 27.98 3.27
181 182 4.460731 TCGAAGAGCTGAGATTTCTGAGAA 59.539 41.667 0.00 0.00 27.98 2.87
182 183 5.047731 TCGAAGAGCTGAGATTTCTGAGAAA 60.048 40.000 10.39 10.39 27.98 2.52
183 184 5.289193 CGAAGAGCTGAGATTTCTGAGAAAG 59.711 44.000 13.56 0.23 27.98 2.62
184 185 5.088680 AGAGCTGAGATTTCTGAGAAAGG 57.911 43.478 13.56 2.84 27.98 3.11
185 186 4.776837 AGAGCTGAGATTTCTGAGAAAGGA 59.223 41.667 13.56 0.00 27.98 3.36
186 187 5.088680 AGCTGAGATTTCTGAGAAAGGAG 57.911 43.478 13.56 7.21 27.98 3.69
187 188 4.080975 AGCTGAGATTTCTGAGAAAGGAGG 60.081 45.833 13.56 4.09 27.98 4.30
188 189 4.323409 GCTGAGATTTCTGAGAAAGGAGGT 60.323 45.833 13.56 0.00 27.98 3.85
189 190 5.413309 TGAGATTTCTGAGAAAGGAGGTC 57.587 43.478 13.56 5.67 0.00 3.85
190 191 4.081972 TGAGATTTCTGAGAAAGGAGGTCG 60.082 45.833 13.56 0.00 0.00 4.79
191 192 4.090090 AGATTTCTGAGAAAGGAGGTCGA 58.910 43.478 13.56 0.00 0.00 4.20
192 193 4.714308 AGATTTCTGAGAAAGGAGGTCGAT 59.286 41.667 13.56 0.00 0.00 3.59
193 194 4.891992 TTTCTGAGAAAGGAGGTCGATT 57.108 40.909 3.02 0.00 0.00 3.34
194 195 4.457834 TTCTGAGAAAGGAGGTCGATTC 57.542 45.455 0.00 0.00 0.00 2.52
195 196 2.423892 TCTGAGAAAGGAGGTCGATTCG 59.576 50.000 0.00 0.00 0.00 3.34
196 197 2.164624 CTGAGAAAGGAGGTCGATTCGT 59.835 50.000 5.89 0.00 0.00 3.85
197 198 2.094700 TGAGAAAGGAGGTCGATTCGTG 60.095 50.000 5.89 0.00 0.00 4.35
198 199 1.893801 AGAAAGGAGGTCGATTCGTGT 59.106 47.619 5.89 0.00 0.00 4.49
199 200 1.993370 GAAAGGAGGTCGATTCGTGTG 59.007 52.381 5.89 0.00 0.00 3.82
200 201 1.254026 AAGGAGGTCGATTCGTGTGA 58.746 50.000 5.89 0.00 0.00 3.58
206 207 2.231478 AGGTCGATTCGTGTGAAGTGAT 59.769 45.455 5.89 0.00 37.57 3.06
209 210 4.434330 GGTCGATTCGTGTGAAGTGATTTC 60.434 45.833 5.89 0.00 37.57 2.17
213 214 5.062683 CGATTCGTGTGAAGTGATTTCTCAT 59.937 40.000 0.00 0.00 40.31 2.90
216 217 3.187022 CGTGTGAAGTGATTTCTCATGCA 59.813 43.478 0.00 0.00 40.31 3.96
231 232 4.701651 TCTCATGCATCCGAAAAGACAAAT 59.298 37.500 0.00 0.00 0.00 2.32
238 239 5.728898 GCATCCGAAAAGACAAATCTAGCTG 60.729 44.000 0.00 0.00 33.57 4.24
239 240 4.894784 TCCGAAAAGACAAATCTAGCTGT 58.105 39.130 0.00 0.00 33.57 4.40
240 241 6.032956 TCCGAAAAGACAAATCTAGCTGTA 57.967 37.500 0.00 0.00 33.57 2.74
241 242 6.460781 TCCGAAAAGACAAATCTAGCTGTAA 58.539 36.000 0.00 0.00 33.57 2.41
261 266 7.308589 GCTGTAAATAAAAAGAGAGAGGCAACA 60.309 37.037 0.00 0.00 41.41 3.33
280 285 1.139520 GGGCATTCACATTCACCGC 59.860 57.895 0.00 0.00 0.00 5.68
286 291 1.271856 TTCACATTCACCGCCCTCTA 58.728 50.000 0.00 0.00 0.00 2.43
288 293 1.138859 TCACATTCACCGCCCTCTATG 59.861 52.381 0.00 0.00 0.00 2.23
290 295 2.102420 CACATTCACCGCCCTCTATGTA 59.898 50.000 0.00 0.00 0.00 2.29
293 298 2.375014 TCACCGCCCTCTATGTATGA 57.625 50.000 0.00 0.00 0.00 2.15
300 307 4.646945 CCGCCCTCTATGTATGAGTATGAT 59.353 45.833 0.00 0.00 0.00 2.45
364 375 3.393472 GCGAGAGGCAGGATTTGAT 57.607 52.632 0.00 0.00 42.87 2.57
404 416 2.085320 TCCTCGCTCAGACTAGACAAC 58.915 52.381 0.00 0.00 0.00 3.32
463 475 1.933181 CAGTTCAACGACAGAGTGCAA 59.067 47.619 0.00 0.00 0.00 4.08
475 490 0.315251 GAGTGCAAGTTTTGGGCTCC 59.685 55.000 0.00 0.00 0.00 4.70
492 507 1.742831 CTCCTCGTCTCTTCTGACTGG 59.257 57.143 0.00 0.00 35.00 4.00
545 561 1.266786 ACAAAACGCTCGAGACGACG 61.267 55.000 27.66 19.00 36.83 5.12
547 563 2.121564 AAAACGCTCGAGACGACGGA 62.122 55.000 27.66 0.00 35.81 4.69
659 675 1.374343 AAGATCCTACGAGCACGCGA 61.374 55.000 15.93 0.00 43.96 5.87
755 775 1.734477 CCTGCGTGACCGAGAAGTG 60.734 63.158 0.00 0.00 35.63 3.16
756 776 1.285950 CTGCGTGACCGAGAAGTGA 59.714 57.895 0.00 0.00 35.63 3.41
767 787 0.529773 GAGAAGTGACACACGTGCCA 60.530 55.000 17.22 8.67 39.64 4.92
896 937 5.532664 ACTCCGGCTCCTATAAAAACTAG 57.467 43.478 0.00 0.00 0.00 2.57
897 938 4.961099 ACTCCGGCTCCTATAAAAACTAGT 59.039 41.667 0.00 0.00 0.00 2.57
931 972 0.324368 TCAGAAGGAAGGAGCCGCTA 60.324 55.000 0.00 0.00 0.00 4.26
950 1003 0.179092 ATACTTAACCGCCCGAGCAC 60.179 55.000 0.00 0.00 39.83 4.40
977 1036 2.266055 GGCCAAGGACGGACAGAG 59.734 66.667 0.00 0.00 32.44 3.35
980 1039 1.893786 CCAAGGACGGACAGAGAGG 59.106 63.158 0.00 0.00 0.00 3.69
1074 1161 2.025969 CTCAGGTGTGTGCTCTGCG 61.026 63.158 0.00 0.00 0.00 5.18
1080 1167 2.736995 GTGTGCTCTGCGCGGTTA 60.737 61.111 17.37 0.62 42.51 2.85
1104 1199 3.181475 CCTCCTTGCTTCGTTCTGCTATA 60.181 47.826 0.00 0.00 0.00 1.31
1105 1200 4.046938 TCCTTGCTTCGTTCTGCTATAG 57.953 45.455 0.00 0.00 0.00 1.31
1188 1285 4.838152 CCGTCCATCAGCCGGGTG 62.838 72.222 27.73 27.73 38.09 4.61
1200 1297 1.669115 CCGGGTGAACAGCTCTGTG 60.669 63.158 2.97 0.00 44.13 3.66
1214 1311 0.328592 TCTGTGTACTCTCTCCGCCT 59.671 55.000 0.00 0.00 0.00 5.52
1215 1312 0.736053 CTGTGTACTCTCTCCGCCTC 59.264 60.000 0.00 0.00 0.00 4.70
1216 1313 0.680280 TGTGTACTCTCTCCGCCTCC 60.680 60.000 0.00 0.00 0.00 4.30
1217 1314 1.451567 TGTACTCTCTCCGCCTCCG 60.452 63.158 0.00 0.00 0.00 4.63
1218 1315 1.451747 GTACTCTCTCCGCCTCCGT 60.452 63.158 0.00 0.00 0.00 4.69
1255 1352 4.872691 AGATTTGCCTGTCGAATTCAGTAG 59.127 41.667 6.22 0.00 0.00 2.57
1256 1353 3.953712 TTGCCTGTCGAATTCAGTAGA 57.046 42.857 6.22 0.00 0.00 2.59
1257 1354 3.510388 TGCCTGTCGAATTCAGTAGAG 57.490 47.619 6.22 0.00 0.00 2.43
1258 1355 2.826128 TGCCTGTCGAATTCAGTAGAGT 59.174 45.455 6.22 0.00 0.00 3.24
1259 1356 4.014406 TGCCTGTCGAATTCAGTAGAGTA 58.986 43.478 6.22 0.00 0.00 2.59
1264 1361 2.931969 TCGAATTCAGTAGAGTACGCGA 59.068 45.455 15.93 0.00 0.00 5.87
1283 1388 2.223144 CGATTTGTTGCTCGTCTTCCAA 59.777 45.455 0.00 0.00 0.00 3.53
1289 1394 0.832135 TGCTCGTCTTCCAACTCCCT 60.832 55.000 0.00 0.00 0.00 4.20
1290 1395 0.390472 GCTCGTCTTCCAACTCCCTG 60.390 60.000 0.00 0.00 0.00 4.45
1309 1414 0.600782 GTCCGTAGTGCCGTTTCCAA 60.601 55.000 0.00 0.00 0.00 3.53
1313 1418 1.604693 CGTAGTGCCGTTTCCAAGAGT 60.605 52.381 0.00 0.00 0.00 3.24
1314 1419 1.798813 GTAGTGCCGTTTCCAAGAGTG 59.201 52.381 0.00 0.00 0.00 3.51
1315 1420 1.166531 AGTGCCGTTTCCAAGAGTGC 61.167 55.000 0.00 0.00 0.00 4.40
1317 1422 1.600916 GCCGTTTCCAAGAGTGCCT 60.601 57.895 0.00 0.00 0.00 4.75
1319 1424 1.576421 CGTTTCCAAGAGTGCCTGC 59.424 57.895 0.00 0.00 0.00 4.85
1321 1426 1.148273 TTTCCAAGAGTGCCTGCGT 59.852 52.632 0.00 0.00 0.00 5.24
1322 1427 1.165907 TTTCCAAGAGTGCCTGCGTG 61.166 55.000 0.00 0.00 0.00 5.34
1323 1428 2.031012 CCAAGAGTGCCTGCGTGA 59.969 61.111 0.00 0.00 0.00 4.35
1324 1429 2.031516 CCAAGAGTGCCTGCGTGAG 61.032 63.158 0.00 0.00 0.00 3.51
1325 1430 2.031516 CAAGAGTGCCTGCGTGAGG 61.032 63.158 0.00 0.00 46.13 3.86
1326 1431 2.511452 AAGAGTGCCTGCGTGAGGT 61.511 57.895 4.76 0.00 44.97 3.85
1327 1432 2.721971 AAGAGTGCCTGCGTGAGGTG 62.722 60.000 4.76 0.00 44.97 4.00
1328 1433 3.226429 GAGTGCCTGCGTGAGGTGA 62.226 63.158 4.76 0.00 44.97 4.02
1329 1434 2.740055 GTGCCTGCGTGAGGTGAG 60.740 66.667 4.76 0.00 44.97 3.51
1330 1435 4.007644 TGCCTGCGTGAGGTGAGG 62.008 66.667 4.76 0.00 44.97 3.86
1331 1436 4.767255 GCCTGCGTGAGGTGAGGG 62.767 72.222 4.76 0.00 44.97 4.30
1332 1437 3.314331 CCTGCGTGAGGTGAGGGT 61.314 66.667 0.00 0.00 37.02 4.34
1333 1438 2.262915 CTGCGTGAGGTGAGGGTC 59.737 66.667 0.00 0.00 0.00 4.46
1334 1439 3.633094 CTGCGTGAGGTGAGGGTCG 62.633 68.421 0.00 0.00 0.00 4.79
1335 1440 3.371063 GCGTGAGGTGAGGGTCGA 61.371 66.667 0.00 0.00 0.00 4.20
1336 1441 2.567049 CGTGAGGTGAGGGTCGAC 59.433 66.667 7.13 7.13 0.00 4.20
1337 1442 2.567049 GTGAGGTGAGGGTCGACG 59.433 66.667 9.92 0.00 0.00 5.12
1338 1443 2.675423 TGAGGTGAGGGTCGACGG 60.675 66.667 9.92 0.00 0.00 4.79
1339 1444 2.360852 GAGGTGAGGGTCGACGGA 60.361 66.667 9.92 0.00 0.00 4.69
1340 1445 2.361357 AGGTGAGGGTCGACGGAG 60.361 66.667 9.92 0.00 0.00 4.63
1341 1446 4.131088 GGTGAGGGTCGACGGAGC 62.131 72.222 9.92 0.00 39.95 4.70
1434 1539 0.385390 CCACTGCCGCCCAAATATTC 59.615 55.000 0.00 0.00 0.00 1.75
1436 1541 0.258774 ACTGCCGCCCAAATATTCCT 59.741 50.000 0.00 0.00 0.00 3.36
1438 1543 1.338020 CTGCCGCCCAAATATTCCTTC 59.662 52.381 0.00 0.00 0.00 3.46
1455 1560 5.470047 TCCTTCAGTTTACCTTCTCTGAC 57.530 43.478 0.00 0.00 36.80 3.51
1487 1601 0.390124 TGTGGTTAGACACGGACACC 59.610 55.000 0.00 0.00 44.21 4.16
1561 1696 3.484547 CGAACGTAACCGCCCAGC 61.485 66.667 0.00 0.00 37.70 4.85
1562 1697 3.122971 GAACGTAACCGCCCAGCC 61.123 66.667 0.00 0.00 37.70 4.85
1566 1701 3.712907 GTAACCGCCCAGCCCAGA 61.713 66.667 0.00 0.00 0.00 3.86
1567 1702 3.399181 TAACCGCCCAGCCCAGAG 61.399 66.667 0.00 0.00 0.00 3.35
1595 1730 1.279271 ACCTCATATATCGGCCAAGGC 59.721 52.381 2.24 1.52 41.06 4.35
1616 1759 3.859414 GGGCCGAGAGCAGAGCAT 61.859 66.667 0.00 0.00 46.50 3.79
1617 1760 2.502492 GGGCCGAGAGCAGAGCATA 61.502 63.158 0.00 0.00 46.50 3.14
1618 1761 1.300542 GGCCGAGAGCAGAGCATAC 60.301 63.158 0.00 0.00 46.50 2.39
1619 1762 1.439228 GCCGAGAGCAGAGCATACA 59.561 57.895 0.00 0.00 42.97 2.29
1620 1763 0.597118 GCCGAGAGCAGAGCATACAG 60.597 60.000 0.00 0.00 42.97 2.74
1621 1764 0.597118 CCGAGAGCAGAGCATACAGC 60.597 60.000 0.00 0.00 46.19 4.40
1634 1777 2.416027 GCATACAGCAGAGAACGAGACA 60.416 50.000 0.00 0.00 44.79 3.41
1636 1779 2.890808 ACAGCAGAGAACGAGACAAA 57.109 45.000 0.00 0.00 0.00 2.83
1656 1799 1.589993 AATGGAGCATCGCGTCTCG 60.590 57.895 5.77 0.00 40.15 4.04
1663 1806 3.485431 ATCGCGTCTCGTCGTCGT 61.485 61.111 5.77 0.00 39.67 4.34
1664 1807 3.417376 ATCGCGTCTCGTCGTCGTC 62.417 63.158 5.77 0.00 39.67 4.20
1666 1809 4.421446 GCGTCTCGTCGTCGTCGT 62.421 66.667 11.41 0.00 38.33 4.34
1746 1894 1.209261 CCCTCCTTGCTTCCTTCTCTC 59.791 57.143 0.00 0.00 0.00 3.20
1747 1895 1.134848 CCTCCTTGCTTCCTTCTCTCG 60.135 57.143 0.00 0.00 0.00 4.04
1754 1902 1.623359 CTTCCTTCTCTCGTTGCTCG 58.377 55.000 0.00 0.00 41.41 5.03
1802 1958 1.268896 GCCATTGCTGTCCATCAATCG 60.269 52.381 0.00 0.00 31.15 3.34
1814 1970 1.399744 ATCAATCGGGTGGAGCGCTA 61.400 55.000 11.50 0.00 0.00 4.26
1828 1984 2.732412 GCGCTATGCTATTCTCTCCA 57.268 50.000 0.00 0.00 41.73 3.86
1836 1992 2.497675 TGCTATTCTCTCCACGCTTCTT 59.502 45.455 0.00 0.00 0.00 2.52
1875 2031 2.858344 CCGTCCAATTCTACACACGATC 59.142 50.000 0.00 0.00 0.00 3.69
1876 2032 3.507786 CGTCCAATTCTACACACGATCA 58.492 45.455 0.00 0.00 0.00 2.92
1888 2044 2.528797 ACGATCAGTTGTTCGTGCC 58.471 52.632 15.16 0.00 45.34 5.01
1914 2070 3.041940 CAGTCCGTGGTGCCGTTC 61.042 66.667 0.00 0.00 0.00 3.95
1938 2098 4.466015 TCCAAGAGTTTCAAGCCTGTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
1941 2101 2.866156 GAGTTTCAAGCCTGTTTTTGCC 59.134 45.455 0.00 0.00 0.00 4.52
1958 2118 2.046285 CCACAATTCCGGGGCTGTC 61.046 63.158 0.00 0.00 0.00 3.51
1976 2136 1.143183 CCGGTTCCGGTACATGGAG 59.857 63.158 20.65 0.00 43.86 3.86
1981 2141 2.418334 GGTTCCGGTACATGGAGAGAAC 60.418 54.545 13.64 1.90 36.72 3.01
1995 2155 6.753913 TGGAGAGAACCATAATCAAGCTAT 57.246 37.500 0.00 0.00 34.77 2.97
1996 2156 6.528321 TGGAGAGAACCATAATCAAGCTATG 58.472 40.000 0.00 0.00 34.77 2.23
2161 2334 0.721718 GAAGTTTCCCGCGTCATCAG 59.278 55.000 4.92 0.00 0.00 2.90
2192 2365 9.520204 CTTATTTTATTCATTGCTCGAACCAAT 57.480 29.630 5.42 5.42 33.41 3.16
2218 2399 3.773860 TTTTCTTTGCGCACTCTGAAA 57.226 38.095 11.12 15.09 0.00 2.69
2276 2479 0.673333 CACCTGACCGCAACTGCATA 60.673 55.000 2.12 0.00 42.21 3.14
2282 2485 1.062587 GACCGCAACTGCATACATCAC 59.937 52.381 2.12 0.00 42.21 3.06
2312 2515 7.996788 TGGATATCAGTTGGAGTATAGTAGGA 58.003 38.462 4.83 0.00 0.00 2.94
2338 2542 7.184106 TGTCTATTTTCGACCGATTATTTTGC 58.816 34.615 0.00 0.00 0.00 3.68
2350 2554 4.204978 CGATTATTTTGCGCAAGTTGATCC 59.795 41.667 23.68 10.09 41.68 3.36
2460 2666 7.581011 AACAAGATATTTTCGAAACAATGGC 57.419 32.000 10.79 0.00 0.00 4.40
2473 2684 2.241160 ACAATGGCAGCAGTTGATTGA 58.759 42.857 14.05 0.00 29.91 2.57
2787 3001 3.727258 CCCTTCATCCCGGCCACA 61.727 66.667 2.24 0.00 0.00 4.17
2839 3056 1.821759 CTGGGCAACAACGACACCA 60.822 57.895 0.00 0.00 39.74 4.17
3231 3454 4.388499 GGGCACACGGACATCGGT 62.388 66.667 0.00 0.00 44.45 4.69
3580 3809 0.388649 GTCGCAGTCCATGTTCTCGT 60.389 55.000 0.00 0.00 0.00 4.18
3608 3840 2.678336 CCAGATTGGCGGTAAGAAGAAC 59.322 50.000 0.00 0.00 0.00 3.01
3609 3841 2.348666 CAGATTGGCGGTAAGAAGAACG 59.651 50.000 0.00 0.00 0.00 3.95
3810 4052 5.693769 TTCCTTTCTCTGATTATTCCCGT 57.306 39.130 0.00 0.00 0.00 5.28
3829 4075 1.342819 GTCCCAATGATCTCGAGAGGG 59.657 57.143 24.27 24.27 36.15 4.30
3865 4111 2.566833 CAAGATGTGGAGACAACCCA 57.433 50.000 0.00 0.00 46.06 4.51
3866 4112 2.862541 CAAGATGTGGAGACAACCCAA 58.137 47.619 0.00 0.00 46.06 4.12
3888 4134 1.153168 CAAAGGGACGGCGATGGAT 60.153 57.895 16.62 0.00 0.00 3.41
3898 4144 4.969196 CGATGGATGGACGGGCGG 62.969 72.222 0.00 0.00 0.00 6.13
3899 4145 4.626081 GATGGATGGACGGGCGGG 62.626 72.222 0.00 0.00 0.00 6.13
3927 4174 1.503542 CAGAAAGCGCGGCAATTCT 59.496 52.632 8.83 11.22 37.42 2.40
3982 4237 0.879090 GGCGGGAAAGAAATCGTGTT 59.121 50.000 0.00 0.00 0.00 3.32
3995 4250 6.001460 AGAAATCGTGTTAGGGAATGTCAAA 58.999 36.000 0.00 0.00 0.00 2.69
3996 4251 5.880054 AATCGTGTTAGGGAATGTCAAAG 57.120 39.130 0.00 0.00 0.00 2.77
3997 4252 4.345859 TCGTGTTAGGGAATGTCAAAGT 57.654 40.909 0.00 0.00 0.00 2.66
3999 4254 5.856156 TCGTGTTAGGGAATGTCAAAGTTA 58.144 37.500 0.00 0.00 0.00 2.24
4011 4272 7.041848 GGAATGTCAAAGTTAGCAAAGCAATTT 60.042 33.333 0.00 0.00 0.00 1.82
4099 4360 3.505680 TGAAATTGCACGCCTAATCTTGT 59.494 39.130 0.00 0.00 0.00 3.16
4100 4361 4.697828 TGAAATTGCACGCCTAATCTTGTA 59.302 37.500 0.00 0.00 0.00 2.41
4101 4362 4.882671 AATTGCACGCCTAATCTTGTAG 57.117 40.909 0.00 0.00 0.00 2.74
4102 4363 2.309528 TGCACGCCTAATCTTGTAGG 57.690 50.000 0.00 0.00 43.23 3.18
4103 4364 1.828595 TGCACGCCTAATCTTGTAGGA 59.171 47.619 2.38 0.00 43.06 2.94
4104 4365 2.159099 TGCACGCCTAATCTTGTAGGAG 60.159 50.000 2.38 1.67 43.06 3.69
4105 4366 2.474816 CACGCCTAATCTTGTAGGAGC 58.525 52.381 2.38 0.00 42.94 4.70
4106 4367 2.108168 ACGCCTAATCTTGTAGGAGCA 58.892 47.619 2.38 0.00 42.94 4.26
4107 4368 2.159085 ACGCCTAATCTTGTAGGAGCAC 60.159 50.000 2.38 0.00 42.94 4.40
4108 4369 2.803492 CGCCTAATCTTGTAGGAGCACC 60.803 54.545 2.38 0.00 43.06 5.01
4109 4370 2.485657 GCCTAATCTTGTAGGAGCACCC 60.486 54.545 0.00 0.00 43.06 4.61
4212 4476 2.065185 ACACGTACCACCACCACCA 61.065 57.895 0.00 0.00 0.00 4.17
4215 4479 2.809307 CGTACCACCACCACCACCA 61.809 63.158 0.00 0.00 0.00 4.17
4218 4482 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
4285 4553 0.671781 CCTCTGAGTTGTCTTGGCCG 60.672 60.000 0.00 0.00 0.00 6.13
4288 4556 1.294659 CTGAGTTGTCTTGGCCGCTC 61.295 60.000 0.00 0.00 0.00 5.03
4289 4557 2.032681 AGTTGTCTTGGCCGCTCC 59.967 61.111 0.00 0.00 0.00 4.70
4290 4558 3.056328 GTTGTCTTGGCCGCTCCC 61.056 66.667 0.00 0.00 0.00 4.30
4310 4578 1.868469 GCTCATCATCAGACTCAGGC 58.132 55.000 0.00 0.00 0.00 4.85
4320 4588 4.265904 TCAGACTCAGGCAAAACGATAA 57.734 40.909 0.00 0.00 0.00 1.75
4323 4591 4.213270 CAGACTCAGGCAAAACGATAAACA 59.787 41.667 0.00 0.00 0.00 2.83
4325 4593 5.473504 AGACTCAGGCAAAACGATAAACATT 59.526 36.000 0.00 0.00 0.00 2.71
4351 4619 2.777114 TGCTGACAAAGAGGGGCATATA 59.223 45.455 0.00 0.00 0.00 0.86
4358 4626 5.826643 ACAAAGAGGGGCATATAAACTCAA 58.173 37.500 0.00 0.00 0.00 3.02
4401 4675 2.344025 CCTGACACGGTAGTTTAAGCC 58.656 52.381 0.00 0.00 0.00 4.35
4442 4733 0.106918 AAGTGGCCAGACGAAAACCA 60.107 50.000 5.11 0.00 0.00 3.67
4516 4807 2.024022 GTCACGCAACGCAAGCAA 59.976 55.556 0.00 0.00 45.62 3.91
4518 4809 3.389211 CACGCAACGCAAGCAAGC 61.389 61.111 0.00 0.00 45.62 4.01
4519 4810 4.629115 ACGCAACGCAAGCAAGCC 62.629 61.111 0.00 0.00 45.62 4.35
4520 4811 4.332637 CGCAACGCAAGCAAGCCT 62.333 61.111 0.00 0.00 45.62 4.58
4525 4816 3.494336 CGCAAGCAAGCCTCGAGG 61.494 66.667 27.83 27.83 38.53 4.63
4550 4841 4.501714 GCGCCATGTGCCCATGTG 62.502 66.667 8.41 1.73 45.83 3.21
4551 4842 3.829044 CGCCATGTGCCCATGTGG 61.829 66.667 8.41 0.00 45.83 4.17
4552 4843 2.362760 GCCATGTGCCCATGTGGA 60.363 61.111 8.41 0.00 45.83 4.02
4553 4844 2.420568 GCCATGTGCCCATGTGGAG 61.421 63.158 8.41 0.00 45.83 3.86
4554 4845 1.000521 CCATGTGCCCATGTGGAGT 60.001 57.895 8.41 0.00 45.83 3.85
4557 4848 0.322816 ATGTGCCCATGTGGAGTGAC 60.323 55.000 0.00 0.00 37.39 3.67
4616 4919 2.880890 CTGGTTCCCTGTTTGTTGAGAG 59.119 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.591429 TCGGCGGCAATAGCATGG 60.591 61.111 10.53 0.00 44.61 3.66
1 2 2.633657 GTCGGCGGCAATAGCATG 59.366 61.111 6.63 0.00 44.61 4.06
2 3 2.591715 GGTCGGCGGCAATAGCAT 60.592 61.111 15.59 0.00 44.61 3.79
3 4 4.089239 TGGTCGGCGGCAATAGCA 62.089 61.111 15.59 3.15 44.61 3.49
5 6 2.125310 TGTGGTCGGCGGCAATAG 60.125 61.111 15.59 0.00 0.00 1.73
6 7 2.435234 GTGTGGTCGGCGGCAATA 60.435 61.111 15.59 0.00 0.00 1.90
11 12 3.656045 GTTTGGTGTGGTCGGCGG 61.656 66.667 7.21 0.00 0.00 6.13
12 13 2.897846 TGTTTGGTGTGGTCGGCG 60.898 61.111 0.00 0.00 0.00 6.46
13 14 1.452145 ATGTGTTTGGTGTGGTCGGC 61.452 55.000 0.00 0.00 0.00 5.54
14 15 1.533731 GTATGTGTTTGGTGTGGTCGG 59.466 52.381 0.00 0.00 0.00 4.79
15 16 1.533731 GGTATGTGTTTGGTGTGGTCG 59.466 52.381 0.00 0.00 0.00 4.79
16 17 1.533731 CGGTATGTGTTTGGTGTGGTC 59.466 52.381 0.00 0.00 0.00 4.02
17 18 1.134037 ACGGTATGTGTTTGGTGTGGT 60.134 47.619 0.00 0.00 0.00 4.16
18 19 1.533731 GACGGTATGTGTTTGGTGTGG 59.466 52.381 0.00 0.00 0.00 4.17
19 20 1.193650 CGACGGTATGTGTTTGGTGTG 59.806 52.381 0.00 0.00 0.00 3.82
20 21 1.504359 CGACGGTATGTGTTTGGTGT 58.496 50.000 0.00 0.00 0.00 4.16
21 22 0.793861 CCGACGGTATGTGTTTGGTG 59.206 55.000 5.48 0.00 0.00 4.17
22 23 0.680618 TCCGACGGTATGTGTTTGGT 59.319 50.000 14.79 0.00 0.00 3.67
23 24 1.461897 GTTCCGACGGTATGTGTTTGG 59.538 52.381 14.79 0.00 0.00 3.28
24 25 2.409975 AGTTCCGACGGTATGTGTTTG 58.590 47.619 14.79 0.00 0.00 2.93
25 26 2.803956 CAAGTTCCGACGGTATGTGTTT 59.196 45.455 14.79 0.00 0.00 2.83
26 27 2.409975 CAAGTTCCGACGGTATGTGTT 58.590 47.619 14.79 0.00 0.00 3.32
27 28 1.938016 GCAAGTTCCGACGGTATGTGT 60.938 52.381 14.79 0.00 0.00 3.72
28 29 0.719465 GCAAGTTCCGACGGTATGTG 59.281 55.000 14.79 9.58 0.00 3.21
29 30 0.390735 GGCAAGTTCCGACGGTATGT 60.391 55.000 14.79 0.00 0.00 2.29
30 31 0.108329 AGGCAAGTTCCGACGGTATG 60.108 55.000 14.79 9.79 0.00 2.39
31 32 0.108329 CAGGCAAGTTCCGACGGTAT 60.108 55.000 14.79 0.00 0.00 2.73
32 33 1.180456 TCAGGCAAGTTCCGACGGTA 61.180 55.000 14.79 0.08 0.00 4.02
33 34 2.030562 CAGGCAAGTTCCGACGGT 59.969 61.111 14.79 0.00 0.00 4.83
34 35 0.882927 TTTCAGGCAAGTTCCGACGG 60.883 55.000 7.84 7.84 0.00 4.79
35 36 1.135972 CATTTCAGGCAAGTTCCGACG 60.136 52.381 0.00 0.00 0.00 5.12
36 37 1.200020 CCATTTCAGGCAAGTTCCGAC 59.800 52.381 0.00 0.00 0.00 4.79
37 38 1.202879 ACCATTTCAGGCAAGTTCCGA 60.203 47.619 0.00 0.00 0.00 4.55
38 39 1.247567 ACCATTTCAGGCAAGTTCCG 58.752 50.000 0.00 0.00 0.00 4.30
39 40 2.492088 GGTACCATTTCAGGCAAGTTCC 59.508 50.000 7.15 0.00 0.00 3.62
40 41 3.057526 GTGGTACCATTTCAGGCAAGTTC 60.058 47.826 19.72 0.00 0.00 3.01
41 42 2.890945 GTGGTACCATTTCAGGCAAGTT 59.109 45.455 19.72 0.00 0.00 2.66
42 43 2.514803 GTGGTACCATTTCAGGCAAGT 58.485 47.619 19.72 0.00 0.00 3.16
43 44 1.468520 CGTGGTACCATTTCAGGCAAG 59.531 52.381 19.72 0.00 0.00 4.01
44 45 1.529226 CGTGGTACCATTTCAGGCAA 58.471 50.000 19.72 0.00 0.00 4.52
45 46 0.958382 GCGTGGTACCATTTCAGGCA 60.958 55.000 19.72 0.00 40.60 4.75
46 47 1.654023 GGCGTGGTACCATTTCAGGC 61.654 60.000 19.72 15.04 40.30 4.85
47 48 0.035439 AGGCGTGGTACCATTTCAGG 60.035 55.000 19.72 0.82 0.00 3.86
48 49 2.550978 CTAGGCGTGGTACCATTTCAG 58.449 52.381 19.72 8.35 0.00 3.02
49 50 1.208535 CCTAGGCGTGGTACCATTTCA 59.791 52.381 19.72 2.00 0.00 2.69
50 51 1.949465 CCTAGGCGTGGTACCATTTC 58.051 55.000 19.72 10.32 0.00 2.17
51 52 0.107361 GCCTAGGCGTGGTACCATTT 60.107 55.000 20.16 6.75 0.00 2.32
52 53 1.525442 GCCTAGGCGTGGTACCATT 59.475 57.895 20.16 7.12 0.00 3.16
53 54 3.227250 GCCTAGGCGTGGTACCAT 58.773 61.111 20.16 4.16 0.00 3.55
64 65 3.200887 CTAGCTGTCGCCGCCTAGG 62.201 68.421 3.67 3.67 44.97 3.02
65 66 2.333225 CTAGCTGTCGCCGCCTAG 59.667 66.667 0.00 0.00 36.60 3.02
66 67 3.900892 GCTAGCTGTCGCCGCCTA 61.901 66.667 7.70 0.00 36.60 3.93
74 75 1.066587 CTAGGCACGGCTAGCTGTC 59.933 63.158 26.48 19.27 32.44 3.51
75 76 0.970937 TTCTAGGCACGGCTAGCTGT 60.971 55.000 23.79 23.79 35.66 4.40
76 77 0.528684 GTTCTAGGCACGGCTAGCTG 60.529 60.000 22.26 22.26 0.00 4.24
77 78 1.817209 GTTCTAGGCACGGCTAGCT 59.183 57.895 19.85 0.00 0.00 3.32
78 79 1.589196 CGTTCTAGGCACGGCTAGC 60.589 63.158 19.85 6.04 33.86 3.42
79 80 4.711980 CGTTCTAGGCACGGCTAG 57.288 61.111 18.87 18.87 33.86 3.42
84 85 2.199236 GAATAACCCGTTCTAGGCACG 58.801 52.381 8.06 8.06 37.39 5.34
85 86 2.093341 TGGAATAACCCGTTCTAGGCAC 60.093 50.000 0.00 0.00 38.00 5.01
86 87 2.189676 TGGAATAACCCGTTCTAGGCA 58.810 47.619 0.00 0.00 38.00 4.75
87 88 2.994186 TGGAATAACCCGTTCTAGGC 57.006 50.000 0.00 0.00 38.00 3.93
88 89 4.777463 ACAATGGAATAACCCGTTCTAGG 58.223 43.478 0.00 0.00 38.00 3.02
89 90 4.506654 CGACAATGGAATAACCCGTTCTAG 59.493 45.833 0.00 0.00 38.00 2.43
90 91 4.081531 ACGACAATGGAATAACCCGTTCTA 60.082 41.667 0.00 0.00 38.00 2.10
91 92 3.267483 CGACAATGGAATAACCCGTTCT 58.733 45.455 0.00 0.00 38.00 3.01
92 93 3.004862 ACGACAATGGAATAACCCGTTC 58.995 45.455 0.00 0.00 38.00 3.95
93 94 2.745281 CACGACAATGGAATAACCCGTT 59.255 45.455 0.00 0.00 38.00 4.44
94 95 2.352388 CACGACAATGGAATAACCCGT 58.648 47.619 0.00 0.00 38.00 5.28
95 96 1.063469 GCACGACAATGGAATAACCCG 59.937 52.381 0.00 0.00 38.00 5.28
96 97 2.088423 TGCACGACAATGGAATAACCC 58.912 47.619 0.00 0.00 38.00 4.11
97 98 3.498082 GTTGCACGACAATGGAATAACC 58.502 45.455 0.00 0.00 41.27 2.85
98 99 3.057876 TGGTTGCACGACAATGGAATAAC 60.058 43.478 0.00 0.00 41.27 1.89
99 100 3.149981 TGGTTGCACGACAATGGAATAA 58.850 40.909 0.00 0.00 41.27 1.40
100 101 2.746904 CTGGTTGCACGACAATGGAATA 59.253 45.455 0.00 0.00 41.27 1.75
101 102 1.541147 CTGGTTGCACGACAATGGAAT 59.459 47.619 0.00 0.00 41.27 3.01
102 103 0.950836 CTGGTTGCACGACAATGGAA 59.049 50.000 0.00 0.00 41.27 3.53
103 104 1.514678 GCTGGTTGCACGACAATGGA 61.515 55.000 0.00 0.00 41.27 3.41
104 105 1.081242 GCTGGTTGCACGACAATGG 60.081 57.895 0.00 0.00 41.27 3.16
105 106 1.081242 GGCTGGTTGCACGACAATG 60.081 57.895 0.00 0.00 45.15 2.82
106 107 1.518056 CTGGCTGGTTGCACGACAAT 61.518 55.000 0.00 0.00 45.15 2.71
107 108 2.124529 TGGCTGGTTGCACGACAA 60.125 55.556 0.00 0.00 45.15 3.18
108 109 2.591429 CTGGCTGGTTGCACGACA 60.591 61.111 0.00 0.00 45.15 4.35
109 110 3.357079 CCTGGCTGGTTGCACGAC 61.357 66.667 1.62 0.00 45.15 4.34
125 126 0.678048 ATGAAGGCAAAGGCTCGACC 60.678 55.000 0.00 0.00 37.50 4.79
126 127 1.135575 CAATGAAGGCAAAGGCTCGAC 60.136 52.381 0.00 0.00 37.50 4.20
127 128 1.167851 CAATGAAGGCAAAGGCTCGA 58.832 50.000 0.00 0.00 37.50 4.04
128 129 1.167851 TCAATGAAGGCAAAGGCTCG 58.832 50.000 0.00 0.00 37.50 5.03
129 130 2.560105 AGTTCAATGAAGGCAAAGGCTC 59.440 45.455 0.00 0.00 37.50 4.70
130 131 2.601905 AGTTCAATGAAGGCAAAGGCT 58.398 42.857 0.00 0.00 41.24 4.58
131 132 3.062042 CAAGTTCAATGAAGGCAAAGGC 58.938 45.455 0.00 0.00 40.13 4.35
132 133 4.202141 TGTCAAGTTCAATGAAGGCAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
133 134 4.935702 TGTCAAGTTCAATGAAGGCAAAG 58.064 39.130 0.00 0.00 0.00 2.77
134 135 4.202141 CCTGTCAAGTTCAATGAAGGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
135 136 3.318839 CCTGTCAAGTTCAATGAAGGCAA 59.681 43.478 0.00 0.00 0.00 4.52
136 137 2.886523 CCTGTCAAGTTCAATGAAGGCA 59.113 45.455 0.00 0.00 0.00 4.75
137 138 2.887152 ACCTGTCAAGTTCAATGAAGGC 59.113 45.455 0.00 0.00 32.76 4.35
138 139 3.187227 CGACCTGTCAAGTTCAATGAAGG 59.813 47.826 0.00 0.00 34.27 3.46
139 140 4.058124 TCGACCTGTCAAGTTCAATGAAG 58.942 43.478 0.00 0.00 0.00 3.02
140 141 4.066646 TCGACCTGTCAAGTTCAATGAA 57.933 40.909 0.00 0.00 0.00 2.57
141 142 3.744238 TCGACCTGTCAAGTTCAATGA 57.256 42.857 0.00 0.00 0.00 2.57
142 143 4.058124 TCTTCGACCTGTCAAGTTCAATG 58.942 43.478 0.00 0.00 0.00 2.82
143 144 4.310769 CTCTTCGACCTGTCAAGTTCAAT 58.689 43.478 0.00 0.00 0.00 2.57
144 145 3.717707 CTCTTCGACCTGTCAAGTTCAA 58.282 45.455 0.00 0.00 0.00 2.69
145 146 2.545952 GCTCTTCGACCTGTCAAGTTCA 60.546 50.000 0.00 0.00 0.00 3.18
146 147 2.062519 GCTCTTCGACCTGTCAAGTTC 58.937 52.381 0.00 0.00 0.00 3.01
147 148 1.689273 AGCTCTTCGACCTGTCAAGTT 59.311 47.619 0.00 0.00 0.00 2.66
148 149 1.000283 CAGCTCTTCGACCTGTCAAGT 60.000 52.381 0.00 0.00 0.00 3.16
149 150 1.270826 TCAGCTCTTCGACCTGTCAAG 59.729 52.381 0.00 1.60 0.00 3.02
150 151 1.270826 CTCAGCTCTTCGACCTGTCAA 59.729 52.381 0.00 0.00 0.00 3.18
151 152 0.884514 CTCAGCTCTTCGACCTGTCA 59.115 55.000 0.00 0.00 0.00 3.58
152 153 1.169577 TCTCAGCTCTTCGACCTGTC 58.830 55.000 0.00 0.00 0.00 3.51
153 154 1.846007 ATCTCAGCTCTTCGACCTGT 58.154 50.000 0.00 0.00 0.00 4.00
154 155 2.957491 AATCTCAGCTCTTCGACCTG 57.043 50.000 0.00 0.00 0.00 4.00
155 156 3.096092 AGAAATCTCAGCTCTTCGACCT 58.904 45.455 0.00 0.00 0.00 3.85
156 157 3.119316 TCAGAAATCTCAGCTCTTCGACC 60.119 47.826 0.00 0.00 0.00 4.79
157 158 4.103365 TCAGAAATCTCAGCTCTTCGAC 57.897 45.455 0.00 0.00 0.00 4.20
158 159 4.013050 TCTCAGAAATCTCAGCTCTTCGA 58.987 43.478 0.00 0.00 0.00 3.71
159 160 4.368874 TCTCAGAAATCTCAGCTCTTCG 57.631 45.455 0.00 0.00 0.00 3.79
160 161 5.581874 CCTTTCTCAGAAATCTCAGCTCTTC 59.418 44.000 0.00 0.00 0.00 2.87
161 162 5.248020 TCCTTTCTCAGAAATCTCAGCTCTT 59.752 40.000 0.00 0.00 0.00 2.85
162 163 4.776837 TCCTTTCTCAGAAATCTCAGCTCT 59.223 41.667 0.00 0.00 0.00 4.09
163 164 5.083533 TCCTTTCTCAGAAATCTCAGCTC 57.916 43.478 0.00 0.00 0.00 4.09
164 165 4.080975 CCTCCTTTCTCAGAAATCTCAGCT 60.081 45.833 0.00 0.00 0.00 4.24
165 166 4.190772 CCTCCTTTCTCAGAAATCTCAGC 58.809 47.826 0.00 0.00 0.00 4.26
166 167 5.418676 GACCTCCTTTCTCAGAAATCTCAG 58.581 45.833 0.00 0.00 0.00 3.35
167 168 4.081972 CGACCTCCTTTCTCAGAAATCTCA 60.082 45.833 0.00 0.00 0.00 3.27
168 169 4.158764 TCGACCTCCTTTCTCAGAAATCTC 59.841 45.833 0.00 0.00 0.00 2.75
169 170 4.090090 TCGACCTCCTTTCTCAGAAATCT 58.910 43.478 0.00 0.00 0.00 2.40
170 171 4.457834 TCGACCTCCTTTCTCAGAAATC 57.542 45.455 0.00 0.00 0.00 2.17
171 172 5.423886 GAATCGACCTCCTTTCTCAGAAAT 58.576 41.667 0.00 0.00 0.00 2.17
172 173 4.618460 CGAATCGACCTCCTTTCTCAGAAA 60.618 45.833 0.00 0.00 0.00 2.52
173 174 3.119459 CGAATCGACCTCCTTTCTCAGAA 60.119 47.826 0.00 0.00 0.00 3.02
174 175 2.423892 CGAATCGACCTCCTTTCTCAGA 59.576 50.000 0.00 0.00 0.00 3.27
175 176 2.164624 ACGAATCGACCTCCTTTCTCAG 59.835 50.000 10.55 0.00 0.00 3.35
176 177 2.094700 CACGAATCGACCTCCTTTCTCA 60.095 50.000 10.55 0.00 0.00 3.27
177 178 2.094649 ACACGAATCGACCTCCTTTCTC 60.095 50.000 10.55 0.00 0.00 2.87
178 179 1.893801 ACACGAATCGACCTCCTTTCT 59.106 47.619 10.55 0.00 0.00 2.52
179 180 1.993370 CACACGAATCGACCTCCTTTC 59.007 52.381 10.55 0.00 0.00 2.62
180 181 1.616865 TCACACGAATCGACCTCCTTT 59.383 47.619 10.55 0.00 0.00 3.11
181 182 1.254026 TCACACGAATCGACCTCCTT 58.746 50.000 10.55 0.00 0.00 3.36
182 183 1.202582 CTTCACACGAATCGACCTCCT 59.797 52.381 10.55 0.00 0.00 3.69
183 184 1.067776 ACTTCACACGAATCGACCTCC 60.068 52.381 10.55 0.00 0.00 4.30
184 185 1.986378 CACTTCACACGAATCGACCTC 59.014 52.381 10.55 0.00 0.00 3.85
185 186 1.611977 TCACTTCACACGAATCGACCT 59.388 47.619 10.55 0.00 0.00 3.85
186 187 2.060326 TCACTTCACACGAATCGACC 57.940 50.000 10.55 0.00 0.00 4.79
187 188 4.386049 AGAAATCACTTCACACGAATCGAC 59.614 41.667 10.55 0.00 36.40 4.20
188 189 4.556233 AGAAATCACTTCACACGAATCGA 58.444 39.130 10.55 0.00 36.40 3.59
189 190 4.385748 TGAGAAATCACTTCACACGAATCG 59.614 41.667 0.00 0.00 36.40 3.34
190 191 5.845985 TGAGAAATCACTTCACACGAATC 57.154 39.130 0.00 0.00 36.40 2.52
191 192 5.391310 GCATGAGAAATCACTTCACACGAAT 60.391 40.000 0.00 0.00 37.44 3.34
192 193 4.083855 GCATGAGAAATCACTTCACACGAA 60.084 41.667 0.00 0.00 37.44 3.85
193 194 3.433274 GCATGAGAAATCACTTCACACGA 59.567 43.478 0.00 0.00 37.44 4.35
194 195 3.187022 TGCATGAGAAATCACTTCACACG 59.813 43.478 0.00 0.00 37.44 4.49
195 196 4.754372 TGCATGAGAAATCACTTCACAC 57.246 40.909 0.00 0.00 37.44 3.82
196 197 4.397103 GGATGCATGAGAAATCACTTCACA 59.603 41.667 2.46 0.00 38.72 3.58
197 198 4.495349 CGGATGCATGAGAAATCACTTCAC 60.495 45.833 2.46 0.00 36.40 3.18
198 199 3.624410 CGGATGCATGAGAAATCACTTCA 59.376 43.478 2.46 0.00 36.40 3.02
199 200 3.873361 TCGGATGCATGAGAAATCACTTC 59.127 43.478 2.46 0.00 0.00 3.01
200 201 3.877559 TCGGATGCATGAGAAATCACTT 58.122 40.909 2.46 0.00 0.00 3.16
206 207 4.071423 TGTCTTTTCGGATGCATGAGAAA 58.929 39.130 17.34 17.34 0.00 2.52
209 210 4.424061 TTTGTCTTTTCGGATGCATGAG 57.576 40.909 2.46 0.00 0.00 2.90
213 214 4.094887 GCTAGATTTGTCTTTTCGGATGCA 59.905 41.667 0.00 0.00 0.00 3.96
216 217 5.491982 ACAGCTAGATTTGTCTTTTCGGAT 58.508 37.500 0.00 0.00 0.00 4.18
231 232 7.982354 GCCTCTCTCTTTTTATTTACAGCTAGA 59.018 37.037 0.00 0.00 0.00 2.43
238 239 7.362142 CCCTGTTGCCTCTCTCTTTTTATTTAC 60.362 40.741 0.00 0.00 0.00 2.01
239 240 6.659242 CCCTGTTGCCTCTCTCTTTTTATTTA 59.341 38.462 0.00 0.00 0.00 1.40
240 241 5.478332 CCCTGTTGCCTCTCTCTTTTTATTT 59.522 40.000 0.00 0.00 0.00 1.40
241 242 5.012893 CCCTGTTGCCTCTCTCTTTTTATT 58.987 41.667 0.00 0.00 0.00 1.40
254 259 0.251922 ATGTGAATGCCCTGTTGCCT 60.252 50.000 0.00 0.00 0.00 4.75
261 266 1.315257 GCGGTGAATGTGAATGCCCT 61.315 55.000 0.00 0.00 0.00 5.19
288 293 9.163903 CGATCGATCAATGTATCATACTCATAC 57.836 37.037 24.40 0.00 0.00 2.39
290 295 6.694844 GCGATCGATCAATGTATCATACTCAT 59.305 38.462 24.40 0.00 0.00 2.90
293 298 5.954335 TGCGATCGATCAATGTATCATACT 58.046 37.500 24.40 0.00 0.00 2.12
300 307 5.106908 TGTTTGTTTGCGATCGATCAATGTA 60.107 36.000 24.40 5.89 0.00 2.29
305 312 3.887339 TTGTTTGTTTGCGATCGATCA 57.113 38.095 24.40 5.14 0.00 2.92
359 370 4.892934 GGGGTGCATAAGTTGGATATCAAA 59.107 41.667 4.83 0.00 37.08 2.69
364 375 2.441750 GAGGGGGTGCATAAGTTGGATA 59.558 50.000 0.00 0.00 0.00 2.59
463 475 0.321996 GAGACGAGGAGCCCAAAACT 59.678 55.000 0.00 0.00 0.00 2.66
475 490 4.974368 ATAACCAGTCAGAAGAGACGAG 57.026 45.455 0.00 0.00 43.24 4.18
492 507 1.089112 CCGGTCCGGGTGAAAATAAC 58.911 55.000 23.59 0.00 44.15 1.89
518 534 4.086664 GTCTCGAGCGTTTTGTTTTTATGC 59.913 41.667 7.81 0.00 0.00 3.14
545 561 1.665679 CATGATACGTGTGCAAGGTCC 59.334 52.381 0.00 0.00 0.00 4.46
547 563 1.086696 GCATGATACGTGTGCAAGGT 58.913 50.000 0.00 0.00 38.68 3.50
583 599 4.164664 ACATGATTGCACCGCGCG 62.165 61.111 25.67 25.67 46.97 6.86
584 600 2.277501 GACATGATTGCACCGCGC 60.278 61.111 0.00 0.00 42.89 6.86
639 655 0.525668 CGCGTGCTCGTAGGATCTTT 60.526 55.000 10.18 0.00 39.49 2.52
640 656 1.064296 CGCGTGCTCGTAGGATCTT 59.936 57.895 10.18 0.00 39.49 2.40
643 659 0.102481 ATTTCGCGTGCTCGTAGGAT 59.898 50.000 5.77 0.00 39.49 3.24
645 661 1.798368 CGATTTCGCGTGCTCGTAGG 61.798 60.000 5.77 0.24 39.49 3.18
647 663 3.670472 CGATTTCGCGTGCTCGTA 58.330 55.556 5.77 0.00 39.49 3.43
659 675 2.894919 GCCCAGGCAATGCGATTT 59.105 55.556 3.12 0.00 41.49 2.17
682 698 2.735478 CTGTTGCGCCCGTTCGTA 60.735 61.111 4.18 0.00 0.00 3.43
730 750 2.430367 GGTCACGCAGGTTCCCTT 59.570 61.111 0.00 0.00 0.00 3.95
755 775 2.452813 CCGCTATGGCACGTGTGTC 61.453 63.158 18.38 8.00 38.60 3.67
756 776 2.434185 CCGCTATGGCACGTGTGT 60.434 61.111 18.38 6.08 38.60 3.72
832 867 8.966069 AGGTAAACTAAAGAAATATCTCAGGC 57.034 34.615 0.00 0.00 33.77 4.85
896 937 0.802607 CTGAGCGCTTCCCGACTTAC 60.803 60.000 13.26 0.00 40.02 2.34
897 938 0.963856 TCTGAGCGCTTCCCGACTTA 60.964 55.000 13.26 0.00 40.02 2.24
931 972 0.179092 GTGCTCGGGCGGTTAAGTAT 60.179 55.000 1.14 0.00 42.25 2.12
977 1036 1.251527 TGGTCGAGTTCTGCTCCCTC 61.252 60.000 0.00 0.00 41.10 4.30
980 1039 0.033504 TGTTGGTCGAGTTCTGCTCC 59.966 55.000 0.00 0.00 41.10 4.70
1074 1161 1.300481 GAAGCAAGGAGGATAACCGC 58.700 55.000 0.00 0.00 41.83 5.68
1076 1163 2.693267 ACGAAGCAAGGAGGATAACC 57.307 50.000 0.00 0.00 0.00 2.85
1078 1165 3.861840 CAGAACGAAGCAAGGAGGATAA 58.138 45.455 0.00 0.00 0.00 1.75
1080 1167 1.677217 GCAGAACGAAGCAAGGAGGAT 60.677 52.381 0.00 0.00 0.00 3.24
1176 1273 2.401766 GCTGTTCACCCGGCTGATG 61.402 63.158 0.00 0.00 33.80 3.07
1188 1285 3.119637 GGAGAGAGTACACAGAGCTGTTC 60.120 52.174 0.00 0.00 42.83 3.18
1199 1296 1.451567 CGGAGGCGGAGAGAGTACA 60.452 63.158 0.00 0.00 0.00 2.90
1200 1297 1.438562 GACGGAGGCGGAGAGAGTAC 61.439 65.000 0.00 0.00 0.00 2.73
1234 1331 4.832248 TCTACTGAATTCGACAGGCAAAT 58.168 39.130 6.49 0.00 39.38 2.32
1255 1352 1.266404 CGAGCAACAAATCGCGTACTC 60.266 52.381 5.77 2.03 31.42 2.59
1256 1353 0.713883 CGAGCAACAAATCGCGTACT 59.286 50.000 5.77 0.00 31.42 2.73
1257 1354 0.437295 ACGAGCAACAAATCGCGTAC 59.563 50.000 5.77 0.00 42.61 3.67
1258 1355 0.711670 GACGAGCAACAAATCGCGTA 59.288 50.000 5.77 0.00 42.61 4.42
1259 1356 0.944311 AGACGAGCAACAAATCGCGT 60.944 50.000 5.77 0.00 42.61 6.01
1264 1361 3.214328 AGTTGGAAGACGAGCAACAAAT 58.786 40.909 0.00 0.00 0.00 2.32
1283 1388 1.982938 GGCACTACGGACAGGGAGT 60.983 63.158 0.00 0.00 0.00 3.85
1289 1394 1.005867 GGAAACGGCACTACGGACA 60.006 57.895 0.00 0.00 38.39 4.02
1290 1395 0.600782 TTGGAAACGGCACTACGGAC 60.601 55.000 0.00 0.00 38.39 4.79
1317 1422 3.680786 CGACCCTCACCTCACGCA 61.681 66.667 0.00 0.00 0.00 5.24
1319 1424 2.567049 GTCGACCCTCACCTCACG 59.433 66.667 3.51 0.00 0.00 4.35
1321 1426 2.675423 CCGTCGACCCTCACCTCA 60.675 66.667 10.58 0.00 0.00 3.86
1322 1427 2.360852 TCCGTCGACCCTCACCTC 60.361 66.667 10.58 0.00 0.00 3.85
1323 1428 2.361357 CTCCGTCGACCCTCACCT 60.361 66.667 10.58 0.00 0.00 4.00
1324 1429 4.131088 GCTCCGTCGACCCTCACC 62.131 72.222 10.58 0.00 0.00 4.02
1325 1430 4.477975 CGCTCCGTCGACCCTCAC 62.478 72.222 10.58 0.00 0.00 3.51
1376 1481 2.681778 AGTCCAGACCTCCCGCAG 60.682 66.667 0.00 0.00 0.00 5.18
1381 1486 2.363147 AGCGGAGTCCAGACCTCC 60.363 66.667 10.49 0.00 0.00 4.30
1382 1487 0.680280 TACAGCGGAGTCCAGACCTC 60.680 60.000 10.49 0.00 0.00 3.85
1386 1491 2.052690 GCCTACAGCGGAGTCCAGA 61.053 63.158 10.49 0.00 0.00 3.86
1416 1521 0.385390 GGAATATTTGGGCGGCAGTG 59.615 55.000 12.47 0.00 0.00 3.66
1420 1525 1.338020 CTGAAGGAATATTTGGGCGGC 59.662 52.381 0.00 0.00 0.00 6.53
1428 1533 8.826765 TCAGAGAAGGTAAACTGAAGGAATATT 58.173 33.333 0.00 0.00 36.63 1.28
1434 1539 4.040461 TGGTCAGAGAAGGTAAACTGAAGG 59.960 45.833 0.00 0.00 40.30 3.46
1436 1541 4.407621 TGTGGTCAGAGAAGGTAAACTGAA 59.592 41.667 0.00 0.00 40.30 3.02
1438 1543 4.336889 TGTGGTCAGAGAAGGTAAACTG 57.663 45.455 0.00 0.00 0.00 3.16
1473 1578 1.661480 CGGTGGTGTCCGTGTCTAA 59.339 57.895 0.00 0.00 44.77 2.10
1483 1588 3.706600 TTTTTATAGGAGCGGTGGTGT 57.293 42.857 0.00 0.00 0.00 4.16
1561 1696 4.748798 AGGTCTGGGGCCTCTGGG 62.749 72.222 9.99 0.00 0.00 4.45
1562 1697 3.086600 GAGGTCTGGGGCCTCTGG 61.087 72.222 9.99 0.00 46.71 3.86
1566 1701 2.839228 GATATATGAGGTCTGGGGCCT 58.161 52.381 0.84 0.00 39.42 5.19
1567 1702 1.482593 CGATATATGAGGTCTGGGGCC 59.517 57.143 0.00 0.00 0.00 5.80
1568 1703 1.482593 CCGATATATGAGGTCTGGGGC 59.517 57.143 0.00 0.00 0.00 5.80
1616 1759 3.067601 TGTTTGTCTCGTTCTCTGCTGTA 59.932 43.478 0.00 0.00 0.00 2.74
1617 1760 2.159099 TGTTTGTCTCGTTCTCTGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
1618 1761 2.473816 TGTTTGTCTCGTTCTCTGCTG 58.526 47.619 0.00 0.00 0.00 4.41
1619 1762 2.890808 TGTTTGTCTCGTTCTCTGCT 57.109 45.000 0.00 0.00 0.00 4.24
1620 1763 3.364366 CCATTGTTTGTCTCGTTCTCTGC 60.364 47.826 0.00 0.00 0.00 4.26
1621 1764 4.058124 TCCATTGTTTGTCTCGTTCTCTG 58.942 43.478 0.00 0.00 0.00 3.35
1622 1765 4.310769 CTCCATTGTTTGTCTCGTTCTCT 58.689 43.478 0.00 0.00 0.00 3.10
1634 1777 0.447801 GACGCGATGCTCCATTGTTT 59.552 50.000 15.93 0.00 0.00 2.83
1636 1779 0.807667 GAGACGCGATGCTCCATTGT 60.808 55.000 15.93 0.00 0.00 2.71
1681 1824 4.426112 CGAGAGCAGCAGGACGCA 62.426 66.667 0.00 0.00 46.13 5.24
1746 1894 2.097160 GATGCAGCACGAGCAACG 59.903 61.111 7.77 1.99 46.27 4.10
1747 1895 1.423056 GAGATGCAGCACGAGCAAC 59.577 57.895 4.07 0.00 46.27 4.17
1754 1902 2.894387 GAGGCGGAGATGCAGCAC 60.894 66.667 4.07 0.00 39.65 4.40
1794 1950 2.537560 GCGCTCCACCCGATTGATG 61.538 63.158 0.00 0.00 0.00 3.07
1814 1970 2.697751 AGAAGCGTGGAGAGAATAGCAT 59.302 45.455 0.00 0.00 0.00 3.79
1828 1984 1.673033 CGTTGGAGATGGAAGAAGCGT 60.673 52.381 0.00 0.00 0.00 5.07
1836 1992 1.377202 GGCAAGCGTTGGAGATGGA 60.377 57.895 0.00 0.00 0.00 3.41
1859 2015 5.845985 ACAACTGATCGTGTGTAGAATTG 57.154 39.130 0.00 0.00 0.00 2.32
1875 2031 2.590575 ACCGGGCACGAACAACTG 60.591 61.111 11.66 0.00 44.60 3.16
1876 2032 2.590575 CACCGGGCACGAACAACT 60.591 61.111 11.66 0.00 44.60 3.16
1914 2070 2.856222 ACAGGCTTGAAACTCTTGGAG 58.144 47.619 1.40 0.00 35.52 3.86
1938 2098 3.978193 AGCCCCGGAATTGTGGCA 61.978 61.111 17.88 0.00 46.45 4.92
1941 2101 2.046285 GGACAGCCCCGGAATTGTG 61.046 63.158 0.73 0.00 0.00 3.33
1966 2126 6.174720 TGATTATGGTTCTCTCCATGTACC 57.825 41.667 8.27 0.00 46.27 3.34
1976 2136 8.613060 TTCATCATAGCTTGATTATGGTTCTC 57.387 34.615 0.00 0.00 42.62 2.87
1981 2141 6.653740 TCTGCTTCATCATAGCTTGATTATGG 59.346 38.462 0.00 0.00 42.62 2.74
1985 2145 5.926663 TCTCTGCTTCATCATAGCTTGATT 58.073 37.500 0.00 0.00 42.62 2.57
1987 2147 4.740034 GCTCTCTGCTTCATCATAGCTTGA 60.740 45.833 0.00 0.00 39.38 3.02
1988 2148 3.495377 GCTCTCTGCTTCATCATAGCTTG 59.505 47.826 0.00 0.00 39.38 4.01
1989 2149 3.134262 TGCTCTCTGCTTCATCATAGCTT 59.866 43.478 0.00 0.00 43.37 3.74
1990 2150 2.699321 TGCTCTCTGCTTCATCATAGCT 59.301 45.455 0.00 0.00 43.37 3.32
1991 2151 3.109044 TGCTCTCTGCTTCATCATAGC 57.891 47.619 0.00 0.00 43.37 2.97
1992 2152 3.997681 CCATGCTCTCTGCTTCATCATAG 59.002 47.826 0.00 0.00 43.37 2.23
1993 2153 3.644738 TCCATGCTCTCTGCTTCATCATA 59.355 43.478 0.00 0.00 43.37 2.15
1994 2154 2.438392 TCCATGCTCTCTGCTTCATCAT 59.562 45.455 0.00 0.00 43.37 2.45
1995 2155 1.835531 TCCATGCTCTCTGCTTCATCA 59.164 47.619 0.00 0.00 43.37 3.07
1996 2156 2.102757 TCTCCATGCTCTCTGCTTCATC 59.897 50.000 0.00 0.00 43.37 2.92
2161 2334 9.988350 TTCGAGCAATGAATAAAATAAGTCTTC 57.012 29.630 0.00 0.00 0.00 2.87
2180 2353 7.681939 AAGAAAAAGTATATTGGTTCGAGCA 57.318 32.000 0.53 0.00 0.00 4.26
2192 2365 5.699001 TCAGAGTGCGCAAAGAAAAAGTATA 59.301 36.000 14.00 0.00 0.00 1.47
2194 2367 3.874543 TCAGAGTGCGCAAAGAAAAAGTA 59.125 39.130 14.00 0.00 0.00 2.24
2218 2399 3.190535 GGTGAATTCGCAAGTGTATTGGT 59.809 43.478 20.06 0.00 39.48 3.67
2276 2479 3.044156 ACTGATATCCAGCTGGTGATGT 58.956 45.455 31.58 17.31 46.81 3.06
2312 2515 7.855904 GCAAAATAATCGGTCGAAAATAGACAT 59.144 33.333 0.00 0.00 40.20 3.06
2338 2542 1.394917 CTCTTTCGGGATCAACTTGCG 59.605 52.381 0.00 0.00 0.00 4.85
2350 2554 1.446272 GGTCGGCAGTCTCTTTCGG 60.446 63.158 0.00 0.00 0.00 4.30
2426 2631 9.677567 TTCGAAAATATCTTGTTTGAAAAGGAG 57.322 29.630 0.00 0.00 0.00 3.69
2438 2644 6.237648 GCTGCCATTGTTTCGAAAATATCTTG 60.238 38.462 13.10 5.07 0.00 3.02
2460 2666 1.329906 GCGAGGATCAATCAACTGCTG 59.670 52.381 0.00 0.00 33.17 4.41
2473 2684 1.135083 CGAGGTTAACAGTGCGAGGAT 60.135 52.381 8.10 0.00 0.00 3.24
2601 2812 1.225376 TGTTGACGTTCATGGACCGC 61.225 55.000 0.00 0.00 0.00 5.68
2787 3001 1.889105 GATGATGCCGGTGATGCGT 60.889 57.895 1.90 0.00 0.00 5.24
3231 3454 2.761195 CGTCTCCGAGATCCGCACA 61.761 63.158 0.33 0.00 36.84 4.57
3531 3760 2.524887 AACCTCCCCACCGACGAA 60.525 61.111 0.00 0.00 0.00 3.85
3580 3809 4.812476 CGCCAATCTGGACGCGGA 62.812 66.667 12.47 0.00 40.96 5.54
3608 3840 4.259451 GCAGTAGCGTCAAAGAAGATAACG 60.259 45.833 0.00 0.00 36.48 3.18
3609 3841 5.132437 GCAGTAGCGTCAAAGAAGATAAC 57.868 43.478 0.00 0.00 0.00 1.89
3763 4005 3.770040 CCGGGACAGACATCGCCA 61.770 66.667 0.00 0.00 0.00 5.69
3810 4052 1.217942 TCCCTCTCGAGATCATTGGGA 59.782 52.381 27.28 27.28 39.66 4.37
3846 4092 2.554032 GTTGGGTTGTCTCCACATCTTG 59.446 50.000 0.00 0.00 33.43 3.02
3858 4104 4.718143 CCTTTGGGGTTGGGTTGT 57.282 55.556 0.00 0.00 0.00 3.32
3927 4174 5.984725 TGTTTCTCCAGTCAAACACTCTAA 58.015 37.500 0.00 0.00 37.54 2.10
3982 4237 5.183140 GCTTTGCTAACTTTGACATTCCCTA 59.817 40.000 0.00 0.00 0.00 3.53
3995 4250 5.049954 TCGACGTTAAATTGCTTTGCTAACT 60.050 36.000 0.00 0.00 0.00 2.24
3996 4251 5.141568 TCGACGTTAAATTGCTTTGCTAAC 58.858 37.500 0.00 0.00 0.00 2.34
3997 4252 5.345609 TCGACGTTAAATTGCTTTGCTAA 57.654 34.783 0.00 0.00 0.00 3.09
3999 4254 3.364964 CCTCGACGTTAAATTGCTTTGCT 60.365 43.478 0.00 0.00 0.00 3.91
4029 4290 1.876453 CTCGTGTTGTTCGGCGACAG 61.876 60.000 10.16 0.00 41.83 3.51
4081 4342 3.118408 TCCTACAAGATTAGGCGTGCAAT 60.118 43.478 0.00 0.00 38.92 3.56
4120 4381 1.812571 ACGTTATCTGCAAGCCAAAGG 59.187 47.619 0.00 0.00 0.00 3.11
4121 4382 3.559238 AACGTTATCTGCAAGCCAAAG 57.441 42.857 0.00 0.00 0.00 2.77
4123 4384 2.418628 GCTAACGTTATCTGCAAGCCAA 59.581 45.455 8.76 0.00 0.00 4.52
4212 4476 2.463589 ATCATTCGTGCGGTGGTGGT 62.464 55.000 0.00 0.00 0.00 4.16
4215 4479 1.305219 CCAATCATTCGTGCGGTGGT 61.305 55.000 0.00 0.00 0.00 4.16
4218 4482 1.748879 CCCCAATCATTCGTGCGGT 60.749 57.895 0.00 0.00 0.00 5.68
4266 4530 0.671781 CGGCCAAGACAACTCAGAGG 60.672 60.000 2.24 0.00 0.00 3.69
4267 4531 1.294659 GCGGCCAAGACAACTCAGAG 61.295 60.000 2.24 0.00 0.00 3.35
4268 4532 1.301716 GCGGCCAAGACAACTCAGA 60.302 57.895 2.24 0.00 0.00 3.27
4288 4556 0.749049 TGAGTCTGATGATGAGCGGG 59.251 55.000 0.00 0.00 0.00 6.13
4289 4557 1.269673 CCTGAGTCTGATGATGAGCGG 60.270 57.143 0.00 0.00 0.00 5.52
4290 4558 1.868930 GCCTGAGTCTGATGATGAGCG 60.869 57.143 0.00 0.00 0.00 5.03
4330 4598 0.991146 TATGCCCCTCTTTGTCAGCA 59.009 50.000 0.00 0.00 34.28 4.41
4331 4599 2.355010 ATATGCCCCTCTTTGTCAGC 57.645 50.000 0.00 0.00 0.00 4.26
4344 4612 4.093556 GGCGAGCTATTGAGTTTATATGCC 59.906 45.833 0.00 0.00 0.00 4.40
4345 4613 4.932200 AGGCGAGCTATTGAGTTTATATGC 59.068 41.667 0.00 0.00 0.00 3.14
4351 4619 2.419297 CCTGAGGCGAGCTATTGAGTTT 60.419 50.000 0.00 0.00 0.00 2.66
4431 4705 1.299541 CTGTGCTGTGGTTTTCGTCT 58.700 50.000 0.00 0.00 0.00 4.18
4546 4837 0.914644 CAGGATGGGTCACTCCACAT 59.085 55.000 0.00 0.00 39.97 3.21
4549 4840 0.692476 CAACAGGATGGGTCACTCCA 59.308 55.000 0.00 0.00 43.62 3.86
4550 4841 0.984230 TCAACAGGATGGGTCACTCC 59.016 55.000 0.00 0.00 43.62 3.85
4551 4842 1.677217 GCTCAACAGGATGGGTCACTC 60.677 57.143 0.00 0.00 43.62 3.51
4552 4843 0.326264 GCTCAACAGGATGGGTCACT 59.674 55.000 0.00 0.00 43.62 3.41
4553 4844 1.021390 CGCTCAACAGGATGGGTCAC 61.021 60.000 0.00 0.00 43.62 3.67
4554 4845 1.296392 CGCTCAACAGGATGGGTCA 59.704 57.895 0.00 0.00 43.62 4.02
4557 4848 2.825836 GCCGCTCAACAGGATGGG 60.826 66.667 0.00 0.00 43.62 4.00
4628 4931 1.219124 CGGTGGTCAGACCCATCAG 59.781 63.158 17.59 4.91 37.50 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.