Multiple sequence alignment - TraesCS3B01G405700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G405700 chr3B 100.000 2300 0 0 1 2300 640831225 640833524 0.000000e+00 4248.0
1 TraesCS3B01G405700 chr3B 90.487 1314 102 15 635 1934 640700301 640701605 0.000000e+00 1712.0
2 TraesCS3B01G405700 chr3B 89.550 1110 98 12 837 1934 640708130 640709233 0.000000e+00 1391.0
3 TraesCS3B01G405700 chr3B 89.978 908 89 2 1028 1934 640693507 640694413 0.000000e+00 1171.0
4 TraesCS3B01G405700 chr3B 100.000 185 0 0 2749 2933 640833973 640834157 2.800000e-90 342.0
5 TraesCS3B01G405700 chr3B 85.625 160 11 4 410 569 640810171 640810318 1.090000e-34 158.0
6 TraesCS3B01G405700 chr3D 91.508 1684 106 21 634 2299 480375412 480377076 0.000000e+00 2283.0
7 TraesCS3B01G405700 chr3D 87.982 1323 111 20 635 1949 480366345 480367627 0.000000e+00 1519.0
8 TraesCS3B01G405700 chr3D 90.036 1114 90 14 832 1934 480357801 480358904 0.000000e+00 1423.0
9 TraesCS3B01G405700 chr3D 92.763 152 9 2 2782 2933 480377217 480377366 4.920000e-53 219.0
10 TraesCS3B01G405700 chr3D 91.011 89 7 1 483 570 243327636 243327724 5.130000e-23 119.0
11 TraesCS3B01G405700 chr3A 93.287 1445 80 6 635 2072 623389237 623390671 0.000000e+00 2115.0
12 TraesCS3B01G405700 chr3A 89.732 1383 114 14 570 1934 623354027 623355399 0.000000e+00 1742.0
13 TraesCS3B01G405700 chr3A 89.932 1331 111 15 634 1949 623361844 623363166 0.000000e+00 1694.0
14 TraesCS3B01G405700 chr3A 89.901 911 90 2 1025 1934 623340348 623341257 0.000000e+00 1171.0
15 TraesCS3B01G405700 chr3A 75.281 445 65 26 40 459 352491706 352492130 1.400000e-38 171.0
16 TraesCS3B01G405700 chr3A 73.160 462 76 35 40 466 717922879 717922431 3.970000e-24 122.0
17 TraesCS3B01G405700 chr3A 97.959 49 1 0 1 49 352491649 352491697 5.210000e-13 86.1
18 TraesCS3B01G405700 chr2A 87.861 173 15 4 40 206 289762672 289762500 6.410000e-47 198.0
19 TraesCS3B01G405700 chr6A 74.126 572 76 32 40 570 88077077 88077617 1.400000e-38 171.0
20 TraesCS3B01G405700 chr1B 84.177 158 13 4 412 569 53238795 53238650 3.050000e-30 143.0
21 TraesCS3B01G405700 chr1B 91.489 94 7 1 483 575 6668119 6668212 8.530000e-26 128.0
22 TraesCS3B01G405700 chr4D 79.798 198 26 5 374 570 160332836 160333020 6.600000e-27 132.0
23 TraesCS3B01G405700 chr4A 93.182 88 5 1 483 569 102966591 102966504 8.530000e-26 128.0
24 TraesCS3B01G405700 chr7D 92.135 89 6 1 483 570 509596526 509596438 1.100000e-24 124.0
25 TraesCS3B01G405700 chr6B 92.135 89 6 1 483 570 377806728 377806640 1.100000e-24 124.0
26 TraesCS3B01G405700 chr2B 92.135 89 6 1 483 570 627834887 627834799 1.100000e-24 124.0
27 TraesCS3B01G405700 chr2D 91.011 89 7 1 483 570 557748006 557747918 5.130000e-23 119.0
28 TraesCS3B01G405700 chr2D 79.290 169 15 5 1 151 13248799 13248633 1.860000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G405700 chr3B 640831225 640834157 2932 False 2295 4248 100.0000 1 2933 2 chr3B.!!$F5 2932
1 TraesCS3B01G405700 chr3B 640700301 640701605 1304 False 1712 1712 90.4870 635 1934 1 chr3B.!!$F2 1299
2 TraesCS3B01G405700 chr3B 640708130 640709233 1103 False 1391 1391 89.5500 837 1934 1 chr3B.!!$F3 1097
3 TraesCS3B01G405700 chr3B 640693507 640694413 906 False 1171 1171 89.9780 1028 1934 1 chr3B.!!$F1 906
4 TraesCS3B01G405700 chr3D 480366345 480367627 1282 False 1519 1519 87.9820 635 1949 1 chr3D.!!$F3 1314
5 TraesCS3B01G405700 chr3D 480357801 480358904 1103 False 1423 1423 90.0360 832 1934 1 chr3D.!!$F2 1102
6 TraesCS3B01G405700 chr3D 480375412 480377366 1954 False 1251 2283 92.1355 634 2933 2 chr3D.!!$F4 2299
7 TraesCS3B01G405700 chr3A 623389237 623390671 1434 False 2115 2115 93.2870 635 2072 1 chr3A.!!$F4 1437
8 TraesCS3B01G405700 chr3A 623354027 623355399 1372 False 1742 1742 89.7320 570 1934 1 chr3A.!!$F2 1364
9 TraesCS3B01G405700 chr3A 623361844 623363166 1322 False 1694 1694 89.9320 634 1949 1 chr3A.!!$F3 1315
10 TraesCS3B01G405700 chr3A 623340348 623341257 909 False 1171 1171 89.9010 1025 1934 1 chr3A.!!$F1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.034477 ATGAGGCGGGTTAGGGTTTG 60.034 55.0 0.0 0.0 0.0 2.93 F
1344 1379 0.037790 GCGTGAAAGTCCTGCTCTCT 60.038 55.0 0.0 0.0 0.0 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1429 0.543749 GAGATACCTGGCAACCTGCT 59.456 55.0 0.0 0.0 44.28 4.24 R
2751 2792 0.103208 CTTGCCCTCTTATCGTCGCT 59.897 55.0 0.0 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.128771 TTCCAGGCATAGAAGTTGGC 57.871 50.000 0.00 0.00 39.77 4.52
21 22 0.255890 TCCAGGCATAGAAGTTGGCC 59.744 55.000 0.00 0.00 46.77 5.36
24 25 3.102090 GGCATAGAAGTTGGCCTCC 57.898 57.895 3.32 0.00 43.09 4.30
25 26 0.815615 GGCATAGAAGTTGGCCTCCG 60.816 60.000 3.32 0.00 43.09 4.63
26 27 0.107654 GCATAGAAGTTGGCCTCCGT 60.108 55.000 3.32 0.00 0.00 4.69
27 28 1.656652 CATAGAAGTTGGCCTCCGTG 58.343 55.000 3.32 0.00 0.00 4.94
28 29 1.066143 CATAGAAGTTGGCCTCCGTGT 60.066 52.381 3.32 0.00 0.00 4.49
29 30 0.320374 TAGAAGTTGGCCTCCGTGTG 59.680 55.000 3.32 0.00 0.00 3.82
30 31 1.966451 GAAGTTGGCCTCCGTGTGG 60.966 63.158 3.32 0.00 0.00 4.17
31 32 3.491598 AAGTTGGCCTCCGTGTGGG 62.492 63.158 3.32 0.00 35.24 4.61
32 33 3.948719 GTTGGCCTCCGTGTGGGA 61.949 66.667 3.32 0.00 44.68 4.37
33 34 3.172106 TTGGCCTCCGTGTGGGAA 61.172 61.111 3.32 0.00 46.61 3.97
34 35 2.758207 TTGGCCTCCGTGTGGGAAA 61.758 57.895 3.32 0.00 46.61 3.13
35 36 2.359975 GGCCTCCGTGTGGGAAAG 60.360 66.667 0.00 0.00 46.61 2.62
36 37 3.056328 GCCTCCGTGTGGGAAAGC 61.056 66.667 0.00 0.00 46.61 3.51
37 38 2.750350 CCTCCGTGTGGGAAAGCT 59.250 61.111 0.00 0.00 46.61 3.74
38 39 1.073199 CCTCCGTGTGGGAAAGCTT 59.927 57.895 0.00 0.00 46.61 3.74
39 40 1.237285 CCTCCGTGTGGGAAAGCTTG 61.237 60.000 0.00 0.00 46.61 4.01
40 41 0.250295 CTCCGTGTGGGAAAGCTTGA 60.250 55.000 0.00 0.00 46.61 3.02
41 42 0.400213 TCCGTGTGGGAAAGCTTGAT 59.600 50.000 0.00 0.00 43.62 2.57
42 43 0.804989 CCGTGTGGGAAAGCTTGATC 59.195 55.000 0.00 0.00 38.47 2.92
43 44 0.443869 CGTGTGGGAAAGCTTGATCG 59.556 55.000 0.00 0.00 0.00 3.69
44 45 0.804989 GTGTGGGAAAGCTTGATCGG 59.195 55.000 0.00 0.00 0.00 4.18
45 46 0.322456 TGTGGGAAAGCTTGATCGGG 60.322 55.000 0.00 0.00 0.00 5.14
46 47 0.035439 GTGGGAAAGCTTGATCGGGA 60.035 55.000 0.00 0.00 0.00 5.14
47 48 0.035439 TGGGAAAGCTTGATCGGGAC 60.035 55.000 0.00 0.00 0.00 4.46
60 61 2.025727 GGGACGTCGCGGATGTAG 59.974 66.667 17.36 0.00 31.35 2.74
61 62 2.025727 GGACGTCGCGGATGTAGG 59.974 66.667 9.92 0.00 31.35 3.18
62 63 2.654404 GACGTCGCGGATGTAGGC 60.654 66.667 6.13 0.00 31.35 3.93
63 64 4.203076 ACGTCGCGGATGTAGGCC 62.203 66.667 6.13 0.00 29.18 5.19
69 70 4.280494 CGGATGTAGGCCGGGTCG 62.280 72.222 2.18 0.00 44.87 4.79
79 80 3.459063 CCGGGTCGGGGAGAGAAC 61.459 72.222 0.00 0.00 44.15 3.01
80 81 3.459063 CGGGTCGGGGAGAGAACC 61.459 72.222 0.00 0.00 41.93 3.62
85 86 3.470888 CGGGGAGAGAACCGGCAT 61.471 66.667 0.00 0.00 46.08 4.40
86 87 2.506472 GGGGAGAGAACCGGCATC 59.494 66.667 0.00 0.00 0.00 3.91
87 88 2.107141 GGGAGAGAACCGGCATCG 59.893 66.667 0.00 0.00 0.00 3.84
97 98 3.610669 CGGCATCGGAGGAGGAGG 61.611 72.222 0.00 0.00 0.00 4.30
98 99 3.934962 GGCATCGGAGGAGGAGGC 61.935 72.222 0.00 0.00 40.25 4.70
99 100 4.292178 GCATCGGAGGAGGAGGCG 62.292 72.222 0.00 0.00 31.16 5.52
100 101 2.519541 CATCGGAGGAGGAGGCGA 60.520 66.667 0.00 0.00 0.00 5.54
101 102 2.127869 CATCGGAGGAGGAGGCGAA 61.128 63.158 0.00 0.00 0.00 4.70
102 103 2.128507 ATCGGAGGAGGAGGCGAAC 61.129 63.158 0.00 0.00 0.00 3.95
103 104 4.194720 CGGAGGAGGAGGCGAACG 62.195 72.222 0.00 0.00 0.00 3.95
104 105 3.839432 GGAGGAGGAGGCGAACGG 61.839 72.222 0.00 0.00 0.00 4.44
105 106 3.839432 GAGGAGGAGGCGAACGGG 61.839 72.222 0.00 0.00 0.00 5.28
106 107 4.698625 AGGAGGAGGCGAACGGGT 62.699 66.667 0.00 0.00 0.00 5.28
107 108 3.703127 GGAGGAGGCGAACGGGTT 61.703 66.667 0.00 0.00 0.00 4.11
108 109 2.434359 GAGGAGGCGAACGGGTTG 60.434 66.667 0.00 0.00 0.00 3.77
109 110 4.699522 AGGAGGCGAACGGGTTGC 62.700 66.667 0.00 0.00 0.00 4.17
110 111 4.699522 GGAGGCGAACGGGTTGCT 62.700 66.667 5.05 0.00 0.00 3.91
111 112 3.423154 GAGGCGAACGGGTTGCTG 61.423 66.667 5.05 0.00 0.00 4.41
116 117 4.025401 GAACGGGTTGCTGCGGTG 62.025 66.667 0.00 0.00 0.00 4.94
131 132 4.154347 GTGGGAGCGGCTGGAGAG 62.154 72.222 7.50 0.00 0.00 3.20
132 133 4.382541 TGGGAGCGGCTGGAGAGA 62.383 66.667 7.50 0.00 0.00 3.10
133 134 3.535962 GGGAGCGGCTGGAGAGAG 61.536 72.222 7.50 0.00 0.00 3.20
134 135 2.441164 GGAGCGGCTGGAGAGAGA 60.441 66.667 7.50 0.00 0.00 3.10
135 136 2.055042 GGAGCGGCTGGAGAGAGAA 61.055 63.158 7.50 0.00 0.00 2.87
136 137 1.608717 GGAGCGGCTGGAGAGAGAAA 61.609 60.000 7.50 0.00 0.00 2.52
137 138 0.463620 GAGCGGCTGGAGAGAGAAAT 59.536 55.000 7.50 0.00 0.00 2.17
138 139 0.177604 AGCGGCTGGAGAGAGAAATG 59.822 55.000 0.00 0.00 0.00 2.32
139 140 0.813210 GCGGCTGGAGAGAGAAATGG 60.813 60.000 0.00 0.00 0.00 3.16
140 141 0.813210 CGGCTGGAGAGAGAAATGGC 60.813 60.000 0.00 0.00 0.00 4.40
141 142 0.254178 GGCTGGAGAGAGAAATGGCA 59.746 55.000 0.00 0.00 0.00 4.92
142 143 1.666054 GCTGGAGAGAGAAATGGCAG 58.334 55.000 0.00 0.00 0.00 4.85
143 144 1.666054 CTGGAGAGAGAAATGGCAGC 58.334 55.000 0.00 0.00 0.00 5.25
144 145 0.107993 TGGAGAGAGAAATGGCAGCG 60.108 55.000 0.00 0.00 0.00 5.18
145 146 0.813210 GGAGAGAGAAATGGCAGCGG 60.813 60.000 0.00 0.00 0.00 5.52
146 147 0.107945 GAGAGAGAAATGGCAGCGGT 60.108 55.000 0.00 0.00 0.00 5.68
147 148 0.392193 AGAGAGAAATGGCAGCGGTG 60.392 55.000 10.98 10.98 0.00 4.94
148 149 1.372087 GAGAGAAATGGCAGCGGTGG 61.372 60.000 17.54 0.00 0.00 4.61
149 150 1.377202 GAGAAATGGCAGCGGTGGA 60.377 57.895 17.54 0.00 0.00 4.02
150 151 1.372087 GAGAAATGGCAGCGGTGGAG 61.372 60.000 17.54 0.00 0.00 3.86
151 152 1.377202 GAAATGGCAGCGGTGGAGA 60.377 57.895 17.54 0.00 0.00 3.71
152 153 1.372087 GAAATGGCAGCGGTGGAGAG 61.372 60.000 17.54 0.00 0.00 3.20
153 154 2.826777 AAATGGCAGCGGTGGAGAGG 62.827 60.000 17.54 0.00 0.00 3.69
162 163 4.779733 GTGGAGAGGGGCTCGGGA 62.780 72.222 0.00 0.00 44.91 5.14
163 164 3.767268 TGGAGAGGGGCTCGGGAT 61.767 66.667 0.00 0.00 44.91 3.85
164 165 3.237741 GGAGAGGGGCTCGGGATG 61.238 72.222 0.00 0.00 44.91 3.51
165 166 2.123251 GAGAGGGGCTCGGGATGA 60.123 66.667 0.00 0.00 35.36 2.92
167 168 3.237741 GAGGGGCTCGGGATGAGG 61.238 72.222 0.00 0.00 45.38 3.86
173 174 3.470888 CTCGGGATGAGGCGGGTT 61.471 66.667 0.00 0.00 41.29 4.11
174 175 2.042741 TCGGGATGAGGCGGGTTA 60.043 61.111 0.00 0.00 0.00 2.85
175 176 2.088674 CTCGGGATGAGGCGGGTTAG 62.089 65.000 0.00 0.00 41.29 2.34
176 177 2.829592 GGGATGAGGCGGGTTAGG 59.170 66.667 0.00 0.00 0.00 2.69
177 178 2.819284 GGGATGAGGCGGGTTAGGG 61.819 68.421 0.00 0.00 0.00 3.53
178 179 2.070650 GGATGAGGCGGGTTAGGGT 61.071 63.158 0.00 0.00 0.00 4.34
179 180 1.632965 GGATGAGGCGGGTTAGGGTT 61.633 60.000 0.00 0.00 0.00 4.11
180 181 0.255033 GATGAGGCGGGTTAGGGTTT 59.745 55.000 0.00 0.00 0.00 3.27
181 182 0.034477 ATGAGGCGGGTTAGGGTTTG 60.034 55.000 0.00 0.00 0.00 2.93
182 183 1.377612 GAGGCGGGTTAGGGTTTGT 59.622 57.895 0.00 0.00 0.00 2.83
183 184 0.614812 GAGGCGGGTTAGGGTTTGTA 59.385 55.000 0.00 0.00 0.00 2.41
184 185 0.616891 AGGCGGGTTAGGGTTTGTAG 59.383 55.000 0.00 0.00 0.00 2.74
185 186 0.393402 GGCGGGTTAGGGTTTGTAGG 60.393 60.000 0.00 0.00 0.00 3.18
186 187 0.393402 GCGGGTTAGGGTTTGTAGGG 60.393 60.000 0.00 0.00 0.00 3.53
187 188 0.253894 CGGGTTAGGGTTTGTAGGGG 59.746 60.000 0.00 0.00 0.00 4.79
188 189 1.672529 GGGTTAGGGTTTGTAGGGGA 58.327 55.000 0.00 0.00 0.00 4.81
189 190 1.562942 GGGTTAGGGTTTGTAGGGGAG 59.437 57.143 0.00 0.00 0.00 4.30
190 191 1.562942 GGTTAGGGTTTGTAGGGGAGG 59.437 57.143 0.00 0.00 0.00 4.30
191 192 2.554563 GTTAGGGTTTGTAGGGGAGGA 58.445 52.381 0.00 0.00 0.00 3.71
192 193 2.504585 GTTAGGGTTTGTAGGGGAGGAG 59.495 54.545 0.00 0.00 0.00 3.69
193 194 0.914902 AGGGTTTGTAGGGGAGGAGC 60.915 60.000 0.00 0.00 0.00 4.70
194 195 1.221021 GGTTTGTAGGGGAGGAGCG 59.779 63.158 0.00 0.00 0.00 5.03
195 196 1.221021 GTTTGTAGGGGAGGAGCGG 59.779 63.158 0.00 0.00 0.00 5.52
196 197 2.666098 TTTGTAGGGGAGGAGCGGC 61.666 63.158 0.00 0.00 0.00 6.53
212 213 4.752879 GCGCGGCTGGGTTCTACA 62.753 66.667 8.83 0.00 0.00 2.74
213 214 2.509336 CGCGGCTGGGTTCTACAG 60.509 66.667 0.00 0.00 38.95 2.74
214 215 2.125106 GCGGCTGGGTTCTACAGG 60.125 66.667 0.00 0.00 36.48 4.00
215 216 2.584608 CGGCTGGGTTCTACAGGG 59.415 66.667 0.00 0.00 36.48 4.45
216 217 2.998949 GGCTGGGTTCTACAGGGG 59.001 66.667 0.00 0.00 36.48 4.79
217 218 1.615424 GGCTGGGTTCTACAGGGGA 60.615 63.158 0.00 0.00 36.48 4.81
218 219 1.627297 GGCTGGGTTCTACAGGGGAG 61.627 65.000 0.00 0.00 36.48 4.30
219 220 1.627297 GCTGGGTTCTACAGGGGAGG 61.627 65.000 0.00 0.00 36.48 4.30
220 221 0.042731 CTGGGTTCTACAGGGGAGGA 59.957 60.000 0.00 0.00 32.38 3.71
221 222 0.042731 TGGGTTCTACAGGGGAGGAG 59.957 60.000 0.00 0.00 0.00 3.69
222 223 0.691413 GGGTTCTACAGGGGAGGAGG 60.691 65.000 0.00 0.00 0.00 4.30
223 224 1.338890 GGTTCTACAGGGGAGGAGGC 61.339 65.000 0.00 0.00 0.00 4.70
224 225 0.617820 GTTCTACAGGGGAGGAGGCA 60.618 60.000 0.00 0.00 0.00 4.75
225 226 0.118346 TTCTACAGGGGAGGAGGCAA 59.882 55.000 0.00 0.00 0.00 4.52
226 227 0.617820 TCTACAGGGGAGGAGGCAAC 60.618 60.000 0.00 0.00 0.00 4.17
227 228 0.909610 CTACAGGGGAGGAGGCAACA 60.910 60.000 0.00 0.00 41.41 3.33
228 229 1.198759 TACAGGGGAGGAGGCAACAC 61.199 60.000 0.00 0.00 41.41 3.32
229 230 3.322466 AGGGGAGGAGGCAACACG 61.322 66.667 0.00 0.00 41.41 4.49
240 241 4.680237 CAACACGCGGCTGGGAGA 62.680 66.667 17.67 0.00 0.00 3.71
241 242 3.936203 AACACGCGGCTGGGAGAA 61.936 61.111 17.67 0.00 0.00 2.87
242 243 3.883744 AACACGCGGCTGGGAGAAG 62.884 63.158 17.67 5.67 0.00 2.85
246 247 3.435186 GCGGCTGGGAGAAGCAAC 61.435 66.667 0.00 0.00 45.43 4.17
247 248 3.121030 CGGCTGGGAGAAGCAACG 61.121 66.667 0.00 0.00 45.43 4.10
248 249 3.435186 GGCTGGGAGAAGCAACGC 61.435 66.667 0.00 0.00 45.43 4.84
249 250 3.793144 GCTGGGAGAAGCAACGCG 61.793 66.667 3.53 3.53 43.01 6.01
250 251 3.793144 CTGGGAGAAGCAACGCGC 61.793 66.667 5.73 0.00 42.91 6.86
278 279 2.359107 CGCAGCTGGGAAGCAGAA 60.359 61.111 25.55 0.00 37.25 3.02
279 280 2.396955 CGCAGCTGGGAAGCAGAAG 61.397 63.158 25.55 0.00 37.25 2.85
280 281 2.698763 GCAGCTGGGAAGCAGAAGC 61.699 63.158 17.12 0.00 42.56 3.86
281 282 1.303074 CAGCTGGGAAGCAGAAGCA 60.303 57.895 5.57 0.00 45.49 3.91
282 283 1.002379 AGCTGGGAAGCAGAAGCAG 60.002 57.895 0.00 0.00 45.49 4.24
283 284 2.698763 GCTGGGAAGCAGAAGCAGC 61.699 63.158 0.00 0.00 45.49 5.25
284 285 2.359107 TGGGAAGCAGAAGCAGCG 60.359 61.111 0.00 0.00 45.49 5.18
285 286 3.808656 GGGAAGCAGAAGCAGCGC 61.809 66.667 0.00 0.00 45.49 5.92
286 287 4.157958 GGAAGCAGAAGCAGCGCG 62.158 66.667 0.00 0.00 45.49 6.86
287 288 4.157958 GAAGCAGAAGCAGCGCGG 62.158 66.667 8.83 2.11 45.49 6.46
305 306 3.402681 CAGGAGGGTGGGCGTGAT 61.403 66.667 0.00 0.00 0.00 3.06
306 307 3.402681 AGGAGGGTGGGCGTGATG 61.403 66.667 0.00 0.00 0.00 3.07
307 308 3.717294 GGAGGGTGGGCGTGATGT 61.717 66.667 0.00 0.00 0.00 3.06
308 309 2.436646 GAGGGTGGGCGTGATGTG 60.437 66.667 0.00 0.00 0.00 3.21
309 310 4.722700 AGGGTGGGCGTGATGTGC 62.723 66.667 0.00 0.00 0.00 4.57
320 321 4.865761 GATGTGCGGCGGCGACTA 62.866 66.667 36.87 19.46 44.10 2.59
321 322 4.873129 ATGTGCGGCGGCGACTAG 62.873 66.667 36.87 5.91 44.10 2.57
362 363 4.577246 CGCGGAGGCAGCTAGGTC 62.577 72.222 0.00 0.00 39.92 3.85
363 364 3.461773 GCGGAGGCAGCTAGGTCA 61.462 66.667 0.00 0.00 39.62 4.02
364 365 2.811101 CGGAGGCAGCTAGGTCAG 59.189 66.667 0.00 0.00 0.00 3.51
373 374 3.905678 CTAGGTCAGCGGCGGGAG 61.906 72.222 9.78 0.00 0.00 4.30
387 388 4.214327 GGAGGAGCGCGGGAGAAG 62.214 72.222 8.83 0.00 0.00 2.85
388 389 4.214327 GAGGAGCGCGGGAGAAGG 62.214 72.222 8.83 0.00 0.00 3.46
389 390 4.761058 AGGAGCGCGGGAGAAGGA 62.761 66.667 8.83 0.00 0.00 3.36
390 391 4.516195 GGAGCGCGGGAGAAGGAC 62.516 72.222 8.83 0.00 0.00 3.85
391 392 4.516195 GAGCGCGGGAGAAGGACC 62.516 72.222 8.83 0.00 0.00 4.46
399 400 1.112950 GGGAGAAGGACCGAGTTAGG 58.887 60.000 0.00 0.00 37.30 2.69
400 401 0.460722 GGAGAAGGACCGAGTTAGGC 59.539 60.000 0.00 0.00 33.69 3.93
401 402 1.476477 GAGAAGGACCGAGTTAGGCT 58.524 55.000 0.00 0.00 33.69 4.58
402 403 1.135333 GAGAAGGACCGAGTTAGGCTG 59.865 57.143 0.00 0.00 33.69 4.85
403 404 1.183549 GAAGGACCGAGTTAGGCTGA 58.816 55.000 0.00 0.00 33.69 4.26
404 405 1.757699 GAAGGACCGAGTTAGGCTGAT 59.242 52.381 0.00 0.00 33.69 2.90
405 406 2.750141 AGGACCGAGTTAGGCTGATA 57.250 50.000 0.00 0.00 33.69 2.15
406 407 2.308690 AGGACCGAGTTAGGCTGATAC 58.691 52.381 0.00 0.00 33.69 2.24
407 408 1.340568 GGACCGAGTTAGGCTGATACC 59.659 57.143 0.00 0.00 33.69 2.73
408 409 2.029623 GACCGAGTTAGGCTGATACCA 58.970 52.381 0.00 0.00 33.69 3.25
409 410 2.628657 GACCGAGTTAGGCTGATACCAT 59.371 50.000 0.00 0.00 33.69 3.55
410 411 3.825014 GACCGAGTTAGGCTGATACCATA 59.175 47.826 0.00 0.00 33.69 2.74
411 412 4.417437 ACCGAGTTAGGCTGATACCATAT 58.583 43.478 0.00 0.00 33.69 1.78
412 413 5.577100 ACCGAGTTAGGCTGATACCATATA 58.423 41.667 0.00 0.00 33.69 0.86
413 414 5.652891 ACCGAGTTAGGCTGATACCATATAG 59.347 44.000 0.00 0.00 33.69 1.31
414 415 5.886474 CCGAGTTAGGCTGATACCATATAGA 59.114 44.000 0.00 0.00 0.00 1.98
415 416 6.038825 CCGAGTTAGGCTGATACCATATAGAG 59.961 46.154 0.00 0.00 0.00 2.43
416 417 6.038825 CGAGTTAGGCTGATACCATATAGAGG 59.961 46.154 0.00 0.00 0.00 3.69
417 418 7.045693 AGTTAGGCTGATACCATATAGAGGA 57.954 40.000 0.00 0.00 0.00 3.71
418 419 7.657306 AGTTAGGCTGATACCATATAGAGGAT 58.343 38.462 0.00 0.00 0.00 3.24
419 420 8.125733 AGTTAGGCTGATACCATATAGAGGATT 58.874 37.037 0.00 0.00 0.00 3.01
420 421 6.805016 AGGCTGATACCATATAGAGGATTG 57.195 41.667 1.26 0.00 0.00 2.67
421 422 5.664908 AGGCTGATACCATATAGAGGATTGG 59.335 44.000 1.26 0.00 35.31 3.16
422 423 5.426833 GGCTGATACCATATAGAGGATTGGT 59.573 44.000 1.26 0.00 44.43 3.67
423 424 6.344500 GCTGATACCATATAGAGGATTGGTG 58.656 44.000 3.78 0.00 42.32 4.17
424 425 6.299805 TGATACCATATAGAGGATTGGTGC 57.700 41.667 3.78 0.00 42.32 5.01
425 426 5.784906 TGATACCATATAGAGGATTGGTGCA 59.215 40.000 3.78 0.00 42.32 4.57
426 427 6.272090 TGATACCATATAGAGGATTGGTGCAA 59.728 38.462 3.78 0.00 42.32 4.08
427 428 5.589367 ACCATATAGAGGATTGGTGCAAT 57.411 39.130 0.00 0.00 40.87 3.56
428 429 5.957132 ACCATATAGAGGATTGGTGCAATT 58.043 37.500 0.00 0.00 40.87 2.32
429 430 6.006449 ACCATATAGAGGATTGGTGCAATTC 58.994 40.000 0.00 0.00 40.87 2.17
430 431 6.005823 CCATATAGAGGATTGGTGCAATTCA 58.994 40.000 0.00 0.00 33.90 2.57
431 432 6.072286 CCATATAGAGGATTGGTGCAATTCAC 60.072 42.308 0.00 0.90 44.90 3.18
432 433 2.086869 AGAGGATTGGTGCAATTCACG 58.913 47.619 0.00 0.00 46.56 4.35
433 434 2.083774 GAGGATTGGTGCAATTCACGA 58.916 47.619 0.00 0.00 46.56 4.35
434 435 2.684881 GAGGATTGGTGCAATTCACGAT 59.315 45.455 0.00 1.06 46.56 3.73
435 436 3.876914 GAGGATTGGTGCAATTCACGATA 59.123 43.478 0.00 0.00 46.56 2.92
436 437 4.464008 AGGATTGGTGCAATTCACGATAT 58.536 39.130 0.00 0.00 46.56 1.63
437 438 5.620206 AGGATTGGTGCAATTCACGATATA 58.380 37.500 0.00 0.00 46.56 0.86
438 439 6.240894 AGGATTGGTGCAATTCACGATATAT 58.759 36.000 0.00 0.00 46.56 0.86
439 440 6.716628 AGGATTGGTGCAATTCACGATATATT 59.283 34.615 0.00 0.00 46.56 1.28
440 441 6.803320 GGATTGGTGCAATTCACGATATATTG 59.197 38.462 0.00 0.00 46.56 1.90
441 442 6.934048 TTGGTGCAATTCACGATATATTGA 57.066 33.333 6.98 0.00 46.56 2.57
442 443 7.509141 TTGGTGCAATTCACGATATATTGAT 57.491 32.000 6.98 0.00 46.56 2.57
443 444 8.614469 TTGGTGCAATTCACGATATATTGATA 57.386 30.769 6.98 0.00 46.56 2.15
444 445 8.255394 TGGTGCAATTCACGATATATTGATAG 57.745 34.615 6.98 0.00 46.56 2.08
445 446 7.334171 TGGTGCAATTCACGATATATTGATAGG 59.666 37.037 6.98 0.00 46.56 2.57
446 447 7.549134 GGTGCAATTCACGATATATTGATAGGA 59.451 37.037 6.98 0.00 46.56 2.94
447 448 9.102757 GTGCAATTCACGATATATTGATAGGAT 57.897 33.333 6.98 0.00 35.76 3.24
448 449 9.101655 TGCAATTCACGATATATTGATAGGATG 57.898 33.333 6.98 0.85 32.36 3.51
449 450 8.066595 GCAATTCACGATATATTGATAGGATGC 58.933 37.037 6.98 6.37 32.36 3.91
450 451 9.101655 CAATTCACGATATATTGATAGGATGCA 57.898 33.333 6.98 0.00 32.36 3.96
451 452 9.842775 AATTCACGATATATTGATAGGATGCAT 57.157 29.630 0.00 0.00 0.00 3.96
454 455 9.918630 TCACGATATATTGATAGGATGCATATG 57.081 33.333 0.00 0.00 0.00 1.78
455 456 8.654215 CACGATATATTGATAGGATGCATATGC 58.346 37.037 21.09 21.09 42.50 3.14
468 469 3.510251 GCATATGCACGTGTCTATGTG 57.490 47.619 26.19 21.37 44.82 3.21
469 470 2.866156 GCATATGCACGTGTCTATGTGT 59.134 45.455 26.19 8.13 44.06 3.72
470 471 3.302675 GCATATGCACGTGTCTATGTGTG 60.303 47.826 26.19 16.41 44.06 3.82
471 472 2.455674 ATGCACGTGTCTATGTGTGT 57.544 45.000 18.38 0.00 44.06 3.72
472 473 1.496934 TGCACGTGTCTATGTGTGTG 58.503 50.000 18.38 0.00 44.06 3.82
473 474 1.202475 TGCACGTGTCTATGTGTGTGT 60.202 47.619 18.38 0.00 44.06 3.72
474 475 1.192312 GCACGTGTCTATGTGTGTGTG 59.808 52.381 18.38 0.00 44.06 3.82
475 476 2.469826 CACGTGTCTATGTGTGTGTGT 58.530 47.619 7.58 0.00 38.69 3.72
476 477 2.218530 CACGTGTCTATGTGTGTGTGTG 59.781 50.000 7.58 0.00 38.69 3.82
477 478 2.159156 ACGTGTCTATGTGTGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
478 479 2.218530 CGTGTCTATGTGTGTGTGTGTG 59.781 50.000 0.00 0.00 0.00 3.82
479 480 3.194861 GTGTCTATGTGTGTGTGTGTGT 58.805 45.455 0.00 0.00 0.00 3.72
480 481 3.001228 GTGTCTATGTGTGTGTGTGTGTG 59.999 47.826 0.00 0.00 0.00 3.82
481 482 3.194861 GTCTATGTGTGTGTGTGTGTGT 58.805 45.455 0.00 0.00 0.00 3.72
482 483 3.001228 GTCTATGTGTGTGTGTGTGTGTG 59.999 47.826 0.00 0.00 0.00 3.82
483 484 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
484 485 2.457366 TGTGTGTGTGTGTGTGTGTA 57.543 45.000 0.00 0.00 0.00 2.90
485 486 2.070028 TGTGTGTGTGTGTGTGTGTAC 58.930 47.619 0.00 0.00 0.00 2.90
486 487 2.070028 GTGTGTGTGTGTGTGTGTACA 58.930 47.619 0.00 0.00 0.00 2.90
487 488 2.480802 GTGTGTGTGTGTGTGTGTACAA 59.519 45.455 0.00 0.00 38.82 2.41
488 489 2.739379 TGTGTGTGTGTGTGTGTACAAG 59.261 45.455 0.00 0.00 38.82 3.16
489 490 2.095213 GTGTGTGTGTGTGTGTACAAGG 59.905 50.000 0.00 0.00 38.82 3.61
490 491 1.668751 GTGTGTGTGTGTGTACAAGGG 59.331 52.381 0.00 0.00 38.82 3.95
491 492 1.305201 GTGTGTGTGTGTACAAGGGG 58.695 55.000 0.00 0.00 38.82 4.79
492 493 1.134340 GTGTGTGTGTGTACAAGGGGA 60.134 52.381 0.00 0.00 38.82 4.81
493 494 1.140052 TGTGTGTGTGTACAAGGGGAG 59.860 52.381 0.00 0.00 38.82 4.30
494 495 1.140252 GTGTGTGTGTACAAGGGGAGT 59.860 52.381 0.00 0.00 38.82 3.85
495 496 1.414919 TGTGTGTGTACAAGGGGAGTC 59.585 52.381 0.00 0.00 38.82 3.36
496 497 1.414919 GTGTGTGTACAAGGGGAGTCA 59.585 52.381 0.00 0.00 38.82 3.41
497 498 1.414919 TGTGTGTACAAGGGGAGTCAC 59.585 52.381 0.00 0.00 32.88 3.67
498 499 0.677288 TGTGTACAAGGGGAGTCACG 59.323 55.000 0.00 0.00 0.00 4.35
499 500 0.677842 GTGTACAAGGGGAGTCACGT 59.322 55.000 0.00 0.00 0.00 4.49
500 501 0.963962 TGTACAAGGGGAGTCACGTC 59.036 55.000 0.00 0.00 0.00 4.34
501 502 0.245813 GTACAAGGGGAGTCACGTCC 59.754 60.000 0.00 0.00 35.64 4.79
502 503 0.113776 TACAAGGGGAGTCACGTCCT 59.886 55.000 0.00 0.00 36.75 3.85
503 504 1.186267 ACAAGGGGAGTCACGTCCTC 61.186 60.000 3.63 3.63 37.36 3.71
504 505 1.155390 AAGGGGAGTCACGTCCTCA 59.845 57.895 12.46 0.00 39.97 3.86
505 506 0.471211 AAGGGGAGTCACGTCCTCAA 60.471 55.000 12.46 0.00 39.97 3.02
506 507 1.186267 AGGGGAGTCACGTCCTCAAC 61.186 60.000 12.46 5.88 39.97 3.18
507 508 1.186267 GGGGAGTCACGTCCTCAACT 61.186 60.000 12.46 0.03 37.01 3.16
508 509 1.542492 GGGAGTCACGTCCTCAACTA 58.458 55.000 12.46 0.00 36.75 2.24
509 510 2.100989 GGGAGTCACGTCCTCAACTAT 58.899 52.381 12.46 0.00 36.75 2.12
510 511 3.285484 GGGAGTCACGTCCTCAACTATA 58.715 50.000 12.46 0.00 36.75 1.31
511 512 3.066481 GGGAGTCACGTCCTCAACTATAC 59.934 52.174 12.46 0.00 36.75 1.47
512 513 3.693085 GGAGTCACGTCCTCAACTATACA 59.307 47.826 12.46 0.00 33.30 2.29
513 514 4.201930 GGAGTCACGTCCTCAACTATACAG 60.202 50.000 12.46 0.00 33.30 2.74
514 515 3.695060 AGTCACGTCCTCAACTATACAGG 59.305 47.826 0.00 0.00 0.00 4.00
515 516 3.021695 TCACGTCCTCAACTATACAGGG 58.978 50.000 0.00 0.00 0.00 4.45
516 517 3.021695 CACGTCCTCAACTATACAGGGA 58.978 50.000 0.00 0.00 0.00 4.20
517 518 3.446161 CACGTCCTCAACTATACAGGGAA 59.554 47.826 0.00 0.00 0.00 3.97
518 519 3.700038 ACGTCCTCAACTATACAGGGAAG 59.300 47.826 0.00 0.00 0.00 3.46
519 520 3.700038 CGTCCTCAACTATACAGGGAAGT 59.300 47.826 0.00 0.00 0.00 3.01
520 521 4.885907 CGTCCTCAACTATACAGGGAAGTA 59.114 45.833 0.00 0.00 0.00 2.24
521 522 5.008811 CGTCCTCAACTATACAGGGAAGTAG 59.991 48.000 0.00 0.00 0.00 2.57
522 523 5.302313 GTCCTCAACTATACAGGGAAGTAGG 59.698 48.000 0.00 0.00 0.00 3.18
523 524 5.195146 TCCTCAACTATACAGGGAAGTAGGA 59.805 44.000 0.00 0.00 29.50 2.94
524 525 5.897824 CCTCAACTATACAGGGAAGTAGGAA 59.102 44.000 0.00 0.00 0.00 3.36
525 526 6.041069 CCTCAACTATACAGGGAAGTAGGAAG 59.959 46.154 0.00 0.00 0.00 3.46
526 527 5.897824 TCAACTATACAGGGAAGTAGGAAGG 59.102 44.000 0.00 0.00 0.00 3.46
527 528 4.224762 ACTATACAGGGAAGTAGGAAGGC 58.775 47.826 0.00 0.00 0.00 4.35
528 529 2.942604 TACAGGGAAGTAGGAAGGCT 57.057 50.000 0.00 0.00 0.00 4.58
529 530 2.046280 ACAGGGAAGTAGGAAGGCTT 57.954 50.000 0.00 0.00 0.00 4.35
530 531 1.630878 ACAGGGAAGTAGGAAGGCTTG 59.369 52.381 3.46 0.00 0.00 4.01
531 532 1.630878 CAGGGAAGTAGGAAGGCTTGT 59.369 52.381 3.46 0.00 0.00 3.16
532 533 2.040412 CAGGGAAGTAGGAAGGCTTGTT 59.960 50.000 3.46 0.00 0.00 2.83
533 534 2.040412 AGGGAAGTAGGAAGGCTTGTTG 59.960 50.000 3.46 0.00 0.00 3.33
534 535 2.224793 GGGAAGTAGGAAGGCTTGTTGT 60.225 50.000 3.46 0.00 0.00 3.32
535 536 3.008704 GGGAAGTAGGAAGGCTTGTTGTA 59.991 47.826 3.46 0.00 0.00 2.41
536 537 4.001652 GGAAGTAGGAAGGCTTGTTGTAC 58.998 47.826 3.46 0.68 0.00 2.90
537 538 4.504340 GGAAGTAGGAAGGCTTGTTGTACA 60.504 45.833 3.46 0.00 0.00 2.90
538 539 4.699925 AGTAGGAAGGCTTGTTGTACAA 57.300 40.909 3.46 3.59 36.54 2.41
552 553 6.625873 TGTTGTACAAGAAATACACATGCA 57.374 33.333 8.98 0.00 32.30 3.96
553 554 7.032377 TGTTGTACAAGAAATACACATGCAA 57.968 32.000 8.98 0.00 32.30 4.08
554 555 6.915300 TGTTGTACAAGAAATACACATGCAAC 59.085 34.615 8.98 0.00 32.30 4.17
555 556 6.625873 TGTACAAGAAATACACATGCAACA 57.374 33.333 0.00 0.00 0.00 3.33
556 557 7.213216 TGTACAAGAAATACACATGCAACAT 57.787 32.000 0.00 0.00 0.00 2.71
557 558 8.329203 TGTACAAGAAATACACATGCAACATA 57.671 30.769 0.00 0.00 0.00 2.29
558 559 8.955388 TGTACAAGAAATACACATGCAACATAT 58.045 29.630 0.00 0.00 0.00 1.78
561 562 8.955388 ACAAGAAATACACATGCAACATATACA 58.045 29.630 0.00 0.00 0.00 2.29
562 563 9.955208 CAAGAAATACACATGCAACATATACAT 57.045 29.630 0.00 0.00 0.00 2.29
564 565 9.565090 AGAAATACACATGCAACATATACATCT 57.435 29.630 0.00 0.00 0.00 2.90
565 566 9.817365 GAAATACACATGCAACATATACATCTC 57.183 33.333 0.00 0.00 0.00 2.75
566 567 8.907222 AATACACATGCAACATATACATCTCA 57.093 30.769 0.00 0.00 0.00 3.27
567 568 8.907222 ATACACATGCAACATATACATCTCAA 57.093 30.769 0.00 0.00 0.00 3.02
568 569 7.019774 ACACATGCAACATATACATCTCAAC 57.980 36.000 0.00 0.00 0.00 3.18
585 586 9.950496 ACATCTCAACATATATTGGTCCTATTC 57.050 33.333 0.00 0.00 0.00 1.75
609 610 7.930217 TCTTGAGTAAAAATGACCAAAGTGAG 58.070 34.615 0.00 0.00 0.00 3.51
610 611 7.556275 TCTTGAGTAAAAATGACCAAAGTGAGT 59.444 33.333 0.00 0.00 0.00 3.41
614 615 8.926715 AGTAAAAATGACCAAAGTGAGTTTTC 57.073 30.769 0.00 0.00 36.92 2.29
623 624 5.105917 ACCAAAGTGAGTTTTCGACACAAAT 60.106 36.000 5.97 0.00 35.69 2.32
624 625 6.094325 ACCAAAGTGAGTTTTCGACACAAATA 59.906 34.615 5.97 0.00 35.69 1.40
683 698 2.058675 CCGGGACAGGAAACAGAGT 58.941 57.895 0.00 0.00 0.00 3.24
684 699 0.396811 CCGGGACAGGAAACAGAGTT 59.603 55.000 0.00 0.00 0.00 3.01
685 700 1.202770 CCGGGACAGGAAACAGAGTTT 60.203 52.381 0.00 0.00 0.00 2.66
686 701 2.143925 CGGGACAGGAAACAGAGTTTC 58.856 52.381 12.83 12.83 0.00 2.78
689 704 2.801111 GGACAGGAAACAGAGTTTCGTC 59.199 50.000 13.07 14.66 0.00 4.20
773 794 2.037871 CAAGGAAACAACCCACCGG 58.962 57.895 0.00 0.00 0.00 5.28
965 991 0.808125 AACGCAAAACACAGAGCACA 59.192 45.000 0.00 0.00 0.00 4.57
969 995 2.663879 CGCAAAACACAGAGCACATCTC 60.664 50.000 0.00 0.00 42.21 2.75
970 996 2.291465 GCAAAACACAGAGCACATCTCA 59.709 45.455 0.00 0.00 44.35 3.27
971 997 3.851105 GCAAAACACAGAGCACATCTCAC 60.851 47.826 0.00 0.00 44.35 3.51
989 1015 4.075682 CTCACAAGTCCTCACTAGTCTCA 58.924 47.826 0.00 0.00 30.14 3.27
990 1016 4.667573 TCACAAGTCCTCACTAGTCTCAT 58.332 43.478 0.00 0.00 30.14 2.90
1281 1316 2.606826 GACCCTTCCTCCGGTGGT 60.607 66.667 21.58 9.90 30.56 4.16
1344 1379 0.037790 GCGTGAAAGTCCTGCTCTCT 60.038 55.000 0.00 0.00 0.00 3.10
1406 1441 4.034258 CGCACAGCAGGTTGCCAG 62.034 66.667 0.00 0.00 46.52 4.85
1410 1445 0.322816 CACAGCAGGTTGCCAGGTAT 60.323 55.000 0.00 0.00 46.52 2.73
1428 1463 5.187967 CAGGTATCTCTGGAACAACTACCTT 59.812 44.000 0.00 0.00 38.70 3.50
1434 1469 1.583495 GGAACAACTACCTTGGCGGC 61.583 60.000 0.00 0.00 35.61 6.53
1435 1470 0.887387 GAACAACTACCTTGGCGGCA 60.887 55.000 7.97 7.97 35.61 5.69
1528 1563 1.084370 GTTCTGGAACGATCTGGCCG 61.084 60.000 0.00 0.00 0.00 6.13
1530 1565 4.812476 TGGAACGATCTGGCCGCG 62.812 66.667 0.00 0.00 0.00 6.46
1542 1577 3.119096 GCCGCGGACCTGAAGAAC 61.119 66.667 33.48 2.06 0.00 3.01
1545 1580 0.245539 CCGCGGACCTGAAGAACTTA 59.754 55.000 24.07 0.00 0.00 2.24
1580 1615 2.644555 AAGACCGTGTTGCTGAGCGT 62.645 55.000 0.00 0.00 0.00 5.07
1671 1706 2.884639 GTGGGTGCAGTTCTACAACAAT 59.115 45.455 0.00 0.00 34.60 2.71
1893 1928 5.509840 GCTATGGTCCAAGTTCTATGACGAT 60.510 44.000 0.00 0.00 32.19 3.73
1957 1995 2.691526 TCACTAATATGTTCGCCCGAGT 59.308 45.455 0.00 0.00 0.00 4.18
2017 2058 8.287439 TGTTCTTTGGTCTTTTCATCTTTGTA 57.713 30.769 0.00 0.00 0.00 2.41
2098 2139 7.094205 GGTGTGATTCTTGTGTTGGAATTAGAT 60.094 37.037 0.00 0.00 33.05 1.98
2100 2141 7.094248 TGTGATTCTTGTGTTGGAATTAGATGG 60.094 37.037 0.00 0.00 33.05 3.51
2107 2148 5.937540 TGTGTTGGAATTAGATGGTAGTGTG 59.062 40.000 0.00 0.00 0.00 3.82
2115 2156 6.561519 ATTAGATGGTAGTGTGGTTAGCTT 57.438 37.500 0.00 0.00 0.00 3.74
2119 2160 4.380841 TGGTAGTGTGGTTAGCTTATCG 57.619 45.455 0.00 0.00 0.00 2.92
2126 2167 5.529800 AGTGTGGTTAGCTTATCGTTGTTTT 59.470 36.000 0.00 0.00 0.00 2.43
2127 2168 5.849604 GTGTGGTTAGCTTATCGTTGTTTTC 59.150 40.000 0.00 0.00 0.00 2.29
2132 2173 6.401796 GGTTAGCTTATCGTTGTTTTCGTGAT 60.402 38.462 0.00 0.00 0.00 3.06
2148 2189 5.622770 TCGTGATATGTCGTATGCAGTAT 57.377 39.130 0.00 0.00 0.00 2.12
2158 2199 2.789339 CGTATGCAGTATGGAAGTGTCG 59.211 50.000 0.00 0.00 42.43 4.35
2255 2296 2.673368 GCAAGACGGGTACAAGAGATTG 59.327 50.000 0.00 0.00 0.00 2.67
2256 2297 3.864921 GCAAGACGGGTACAAGAGATTGT 60.865 47.826 0.00 0.00 38.85 2.71
2260 2301 7.262772 CAAGACGGGTACAAGAGATTGTATTA 58.737 38.462 4.32 0.00 39.33 0.98
2261 2302 6.803642 AGACGGGTACAAGAGATTGTATTAC 58.196 40.000 4.32 0.00 39.33 1.89
2262 2303 6.379133 AGACGGGTACAAGAGATTGTATTACA 59.621 38.462 4.32 0.00 39.33 2.41
2263 2304 7.069578 AGACGGGTACAAGAGATTGTATTACAT 59.930 37.037 4.32 0.00 39.33 2.29
2264 2305 7.562135 ACGGGTACAAGAGATTGTATTACATT 58.438 34.615 4.32 0.00 39.33 2.71
2265 2306 8.044908 ACGGGTACAAGAGATTGTATTACATTT 58.955 33.333 4.32 0.00 39.33 2.32
2266 2307 8.335356 CGGGTACAAGAGATTGTATTACATTTG 58.665 37.037 4.32 1.90 39.33 2.32
2267 2308 8.621286 GGGTACAAGAGATTGTATTACATTTGG 58.379 37.037 4.32 0.00 39.33 3.28
2268 2309 9.174166 GGTACAAGAGATTGTATTACATTTGGT 57.826 33.333 4.32 0.00 39.33 3.67
2765 2806 4.327885 GGCAGCGACGATAAGAGG 57.672 61.111 0.00 0.00 0.00 3.69
2766 2807 1.300233 GGCAGCGACGATAAGAGGG 60.300 63.158 0.00 0.00 0.00 4.30
2767 2808 1.951631 GCAGCGACGATAAGAGGGC 60.952 63.158 0.00 0.00 0.00 5.19
2768 2809 1.437573 CAGCGACGATAAGAGGGCA 59.562 57.895 0.00 0.00 0.00 5.36
2769 2810 0.179111 CAGCGACGATAAGAGGGCAA 60.179 55.000 0.00 0.00 0.00 4.52
2770 2811 0.103208 AGCGACGATAAGAGGGCAAG 59.897 55.000 0.00 0.00 0.00 4.01
2771 2812 0.876342 GCGACGATAAGAGGGCAAGG 60.876 60.000 0.00 0.00 0.00 3.61
2772 2813 0.744874 CGACGATAAGAGGGCAAGGA 59.255 55.000 0.00 0.00 0.00 3.36
2773 2814 1.136305 CGACGATAAGAGGGCAAGGAA 59.864 52.381 0.00 0.00 0.00 3.36
2774 2815 2.799917 CGACGATAAGAGGGCAAGGAAG 60.800 54.545 0.00 0.00 0.00 3.46
2775 2816 1.486726 ACGATAAGAGGGCAAGGAAGG 59.513 52.381 0.00 0.00 0.00 3.46
2776 2817 1.762957 CGATAAGAGGGCAAGGAAGGA 59.237 52.381 0.00 0.00 0.00 3.36
2777 2818 2.224161 CGATAAGAGGGCAAGGAAGGAG 60.224 54.545 0.00 0.00 0.00 3.69
2778 2819 1.584724 TAAGAGGGCAAGGAAGGAGG 58.415 55.000 0.00 0.00 0.00 4.30
2779 2820 1.210885 AAGAGGGCAAGGAAGGAGGG 61.211 60.000 0.00 0.00 0.00 4.30
2780 2821 2.615288 AGGGCAAGGAAGGAGGGG 60.615 66.667 0.00 0.00 0.00 4.79
2788 2829 1.027815 AGGAAGGAGGGGTCCACTAT 58.972 55.000 0.00 0.00 36.28 2.12
2808 2849 2.956132 TGGGGCATTCTCTTTTGTTGA 58.044 42.857 0.00 0.00 0.00 3.18
2815 2856 1.082104 CTCTTTTGTTGACGGCGGC 60.082 57.895 13.24 9.67 0.00 6.53
2846 2887 3.912907 GCATGCATGGCTGGGCTC 61.913 66.667 27.34 4.91 0.00 4.70
2856 2897 1.078848 GCTGGGCTCGTGAATCTGT 60.079 57.895 0.00 0.00 0.00 3.41
2861 2902 1.066858 GGGCTCGTGAATCTGTTCTCA 60.067 52.381 0.00 0.00 35.33 3.27
2862 2903 2.266554 GGCTCGTGAATCTGTTCTCAG 58.733 52.381 0.00 0.00 42.54 3.35
2866 2907 2.029020 TCGTGAATCTGTTCTCAGGGTG 60.029 50.000 0.00 0.00 41.59 4.61
2903 2944 1.850377 TGTGATTTGGTTTTGCAGCG 58.150 45.000 0.00 0.00 0.00 5.18
2905 2946 2.359214 TGTGATTTGGTTTTGCAGCGTA 59.641 40.909 0.00 0.00 0.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.446435 GCCAACTTCTATGCCTGGAAA 58.554 47.619 0.00 0.00 0.00 3.13
1 2 1.340991 GGCCAACTTCTATGCCTGGAA 60.341 52.381 0.00 0.00 40.77 3.53
2 3 0.255890 GGCCAACTTCTATGCCTGGA 59.744 55.000 0.00 0.00 40.77 3.86
3 4 2.799176 GGCCAACTTCTATGCCTGG 58.201 57.895 0.00 0.00 40.77 4.45
6 7 0.815615 CGGAGGCCAACTTCTATGCC 60.816 60.000 5.01 0.00 44.35 4.40
7 8 0.107654 ACGGAGGCCAACTTCTATGC 60.108 55.000 5.01 0.00 0.00 3.14
8 9 1.066143 ACACGGAGGCCAACTTCTATG 60.066 52.381 5.01 0.00 0.00 2.23
9 10 1.066143 CACACGGAGGCCAACTTCTAT 60.066 52.381 5.01 0.00 0.00 1.98
10 11 0.320374 CACACGGAGGCCAACTTCTA 59.680 55.000 5.01 0.00 0.00 2.10
11 12 1.071471 CACACGGAGGCCAACTTCT 59.929 57.895 5.01 0.00 0.00 2.85
12 13 1.966451 CCACACGGAGGCCAACTTC 60.966 63.158 5.01 0.00 0.00 3.01
13 14 2.113139 CCACACGGAGGCCAACTT 59.887 61.111 5.01 0.00 0.00 2.66
14 15 3.953775 CCCACACGGAGGCCAACT 61.954 66.667 5.01 0.00 0.00 3.16
15 16 2.969300 TTTCCCACACGGAGGCCAAC 62.969 60.000 5.01 0.00 43.39 3.77
16 17 2.690653 CTTTCCCACACGGAGGCCAA 62.691 60.000 5.01 0.00 43.39 4.52
17 18 3.172106 TTTCCCACACGGAGGCCA 61.172 61.111 5.01 0.00 43.39 5.36
18 19 2.359975 CTTTCCCACACGGAGGCC 60.360 66.667 0.00 0.00 43.39 5.19
19 20 3.056328 GCTTTCCCACACGGAGGC 61.056 66.667 0.00 0.00 43.39 4.70
20 21 1.073199 AAGCTTTCCCACACGGAGG 59.927 57.895 0.00 0.00 43.39 4.30
21 22 0.250295 TCAAGCTTTCCCACACGGAG 60.250 55.000 0.00 0.00 43.39 4.63
22 23 0.400213 ATCAAGCTTTCCCACACGGA 59.600 50.000 0.00 0.00 39.68 4.69
23 24 0.804989 GATCAAGCTTTCCCACACGG 59.195 55.000 0.00 0.00 0.00 4.94
24 25 0.443869 CGATCAAGCTTTCCCACACG 59.556 55.000 0.00 0.00 0.00 4.49
25 26 0.804989 CCGATCAAGCTTTCCCACAC 59.195 55.000 0.00 0.00 0.00 3.82
26 27 0.322456 CCCGATCAAGCTTTCCCACA 60.322 55.000 0.00 0.00 0.00 4.17
27 28 0.035439 TCCCGATCAAGCTTTCCCAC 60.035 55.000 0.00 0.00 0.00 4.61
28 29 0.035439 GTCCCGATCAAGCTTTCCCA 60.035 55.000 0.00 0.00 0.00 4.37
29 30 1.090052 CGTCCCGATCAAGCTTTCCC 61.090 60.000 0.00 0.00 0.00 3.97
30 31 0.391263 ACGTCCCGATCAAGCTTTCC 60.391 55.000 0.00 0.00 0.00 3.13
31 32 1.000145 GACGTCCCGATCAAGCTTTC 59.000 55.000 3.51 0.00 0.00 2.62
32 33 0.736325 CGACGTCCCGATCAAGCTTT 60.736 55.000 10.58 0.00 0.00 3.51
33 34 1.153823 CGACGTCCCGATCAAGCTT 60.154 57.895 10.58 0.00 0.00 3.74
34 35 2.490217 CGACGTCCCGATCAAGCT 59.510 61.111 10.58 0.00 0.00 3.74
35 36 3.255379 GCGACGTCCCGATCAAGC 61.255 66.667 10.58 0.58 0.00 4.01
36 37 2.949678 CGCGACGTCCCGATCAAG 60.950 66.667 17.36 0.00 0.00 3.02
37 38 4.485834 CCGCGACGTCCCGATCAA 62.486 66.667 23.32 0.00 0.00 2.57
39 40 3.962421 ATCCGCGACGTCCCGATC 61.962 66.667 23.32 0.72 0.00 3.69
40 41 4.266070 CATCCGCGACGTCCCGAT 62.266 66.667 23.32 11.84 0.00 4.18
42 43 3.802008 CTACATCCGCGACGTCCCG 62.802 68.421 15.47 15.47 0.00 5.14
43 44 2.025727 CTACATCCGCGACGTCCC 59.974 66.667 8.23 0.00 0.00 4.46
44 45 2.025727 CCTACATCCGCGACGTCC 59.974 66.667 8.23 1.77 0.00 4.79
45 46 2.654404 GCCTACATCCGCGACGTC 60.654 66.667 8.23 5.18 0.00 4.34
46 47 4.203076 GGCCTACATCCGCGACGT 62.203 66.667 8.23 3.64 0.00 4.34
48 49 4.944372 CCGGCCTACATCCGCGAC 62.944 72.222 8.23 0.00 45.19 5.19
51 52 4.603946 GACCCGGCCTACATCCGC 62.604 72.222 0.00 0.00 45.19 5.54
52 53 4.280494 CGACCCGGCCTACATCCG 62.280 72.222 0.00 0.00 46.05 4.18
53 54 3.925090 CCGACCCGGCCTACATCC 61.925 72.222 0.00 0.00 41.17 3.51
54 55 3.925090 CCCGACCCGGCCTACATC 61.925 72.222 0.00 0.00 46.86 3.06
63 64 3.459063 GGTTCTCTCCCCGACCCG 61.459 72.222 0.00 0.00 0.00 5.28
68 69 3.447025 GATGCCGGTTCTCTCCCCG 62.447 68.421 1.90 0.00 43.82 5.73
69 70 2.506472 GATGCCGGTTCTCTCCCC 59.494 66.667 1.90 0.00 0.00 4.81
70 71 2.107141 CGATGCCGGTTCTCTCCC 59.893 66.667 1.90 0.00 0.00 4.30
80 81 3.610669 CCTCCTCCTCCGATGCCG 61.611 72.222 0.00 0.00 0.00 5.69
81 82 3.934962 GCCTCCTCCTCCGATGCC 61.935 72.222 0.00 0.00 0.00 4.40
82 83 4.292178 CGCCTCCTCCTCCGATGC 62.292 72.222 0.00 0.00 0.00 3.91
83 84 2.127869 TTCGCCTCCTCCTCCGATG 61.128 63.158 0.00 0.00 0.00 3.84
84 85 2.128507 GTTCGCCTCCTCCTCCGAT 61.129 63.158 0.00 0.00 0.00 4.18
85 86 2.754658 GTTCGCCTCCTCCTCCGA 60.755 66.667 0.00 0.00 0.00 4.55
86 87 4.194720 CGTTCGCCTCCTCCTCCG 62.195 72.222 0.00 0.00 0.00 4.63
87 88 3.839432 CCGTTCGCCTCCTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
88 89 3.839432 CCCGTTCGCCTCCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
89 90 4.698625 ACCCGTTCGCCTCCTCCT 62.699 66.667 0.00 0.00 0.00 3.69
90 91 3.703127 AACCCGTTCGCCTCCTCC 61.703 66.667 0.00 0.00 0.00 4.30
91 92 2.434359 CAACCCGTTCGCCTCCTC 60.434 66.667 0.00 0.00 0.00 3.71
92 93 4.699522 GCAACCCGTTCGCCTCCT 62.700 66.667 0.00 0.00 0.00 3.69
93 94 4.699522 AGCAACCCGTTCGCCTCC 62.700 66.667 0.00 0.00 0.00 4.30
94 95 3.423154 CAGCAACCCGTTCGCCTC 61.423 66.667 0.00 0.00 0.00 4.70
99 100 4.025401 CACCGCAGCAACCCGTTC 62.025 66.667 0.00 0.00 0.00 3.95
114 115 4.154347 CTCTCCAGCCGCTCCCAC 62.154 72.222 0.00 0.00 0.00 4.61
115 116 4.382541 TCTCTCCAGCCGCTCCCA 62.383 66.667 0.00 0.00 0.00 4.37
116 117 3.535962 CTCTCTCCAGCCGCTCCC 61.536 72.222 0.00 0.00 0.00 4.30
117 118 1.608717 TTTCTCTCTCCAGCCGCTCC 61.609 60.000 0.00 0.00 0.00 4.70
118 119 0.463620 ATTTCTCTCTCCAGCCGCTC 59.536 55.000 0.00 0.00 0.00 5.03
119 120 0.177604 CATTTCTCTCTCCAGCCGCT 59.822 55.000 0.00 0.00 0.00 5.52
120 121 0.813210 CCATTTCTCTCTCCAGCCGC 60.813 60.000 0.00 0.00 0.00 6.53
121 122 0.813210 GCCATTTCTCTCTCCAGCCG 60.813 60.000 0.00 0.00 0.00 5.52
122 123 0.254178 TGCCATTTCTCTCTCCAGCC 59.746 55.000 0.00 0.00 0.00 4.85
123 124 1.666054 CTGCCATTTCTCTCTCCAGC 58.334 55.000 0.00 0.00 0.00 4.85
124 125 1.666054 GCTGCCATTTCTCTCTCCAG 58.334 55.000 0.00 0.00 0.00 3.86
125 126 0.107993 CGCTGCCATTTCTCTCTCCA 60.108 55.000 0.00 0.00 0.00 3.86
126 127 0.813210 CCGCTGCCATTTCTCTCTCC 60.813 60.000 0.00 0.00 0.00 3.71
127 128 0.107945 ACCGCTGCCATTTCTCTCTC 60.108 55.000 0.00 0.00 0.00 3.20
128 129 0.392193 CACCGCTGCCATTTCTCTCT 60.392 55.000 0.00 0.00 0.00 3.10
129 130 1.372087 CCACCGCTGCCATTTCTCTC 61.372 60.000 0.00 0.00 0.00 3.20
130 131 1.377725 CCACCGCTGCCATTTCTCT 60.378 57.895 0.00 0.00 0.00 3.10
131 132 1.372087 CTCCACCGCTGCCATTTCTC 61.372 60.000 0.00 0.00 0.00 2.87
132 133 1.377725 CTCCACCGCTGCCATTTCT 60.378 57.895 0.00 0.00 0.00 2.52
133 134 1.372087 CTCTCCACCGCTGCCATTTC 61.372 60.000 0.00 0.00 0.00 2.17
134 135 1.377725 CTCTCCACCGCTGCCATTT 60.378 57.895 0.00 0.00 0.00 2.32
135 136 2.270205 CTCTCCACCGCTGCCATT 59.730 61.111 0.00 0.00 0.00 3.16
136 137 3.790437 CCTCTCCACCGCTGCCAT 61.790 66.667 0.00 0.00 0.00 4.40
145 146 4.779733 TCCCGAGCCCCTCTCCAC 62.780 72.222 0.00 0.00 38.62 4.02
146 147 3.767268 ATCCCGAGCCCCTCTCCA 61.767 66.667 0.00 0.00 38.62 3.86
147 148 3.237741 CATCCCGAGCCCCTCTCC 61.238 72.222 0.00 0.00 38.62 3.71
148 149 2.123251 TCATCCCGAGCCCCTCTC 60.123 66.667 0.00 0.00 38.47 3.20
149 150 2.123077 CTCATCCCGAGCCCCTCT 60.123 66.667 0.00 0.00 34.18 3.69
150 151 3.237741 CCTCATCCCGAGCCCCTC 61.238 72.222 0.00 0.00 40.78 4.30
156 157 2.088674 CTAACCCGCCTCATCCCGAG 62.089 65.000 0.00 0.00 41.89 4.63
157 158 2.042741 TAACCCGCCTCATCCCGA 60.043 61.111 0.00 0.00 0.00 5.14
158 159 2.421739 CTAACCCGCCTCATCCCG 59.578 66.667 0.00 0.00 0.00 5.14
159 160 2.819284 CCCTAACCCGCCTCATCCC 61.819 68.421 0.00 0.00 0.00 3.85
160 161 1.632965 AACCCTAACCCGCCTCATCC 61.633 60.000 0.00 0.00 0.00 3.51
161 162 0.255033 AAACCCTAACCCGCCTCATC 59.745 55.000 0.00 0.00 0.00 2.92
162 163 0.034477 CAAACCCTAACCCGCCTCAT 60.034 55.000 0.00 0.00 0.00 2.90
163 164 1.377229 CAAACCCTAACCCGCCTCA 59.623 57.895 0.00 0.00 0.00 3.86
164 165 0.614812 TACAAACCCTAACCCGCCTC 59.385 55.000 0.00 0.00 0.00 4.70
165 166 0.616891 CTACAAACCCTAACCCGCCT 59.383 55.000 0.00 0.00 0.00 5.52
166 167 0.393402 CCTACAAACCCTAACCCGCC 60.393 60.000 0.00 0.00 0.00 6.13
167 168 0.393402 CCCTACAAACCCTAACCCGC 60.393 60.000 0.00 0.00 0.00 6.13
168 169 0.253894 CCCCTACAAACCCTAACCCG 59.746 60.000 0.00 0.00 0.00 5.28
169 170 1.562942 CTCCCCTACAAACCCTAACCC 59.437 57.143 0.00 0.00 0.00 4.11
170 171 1.562942 CCTCCCCTACAAACCCTAACC 59.437 57.143 0.00 0.00 0.00 2.85
171 172 2.504585 CTCCTCCCCTACAAACCCTAAC 59.495 54.545 0.00 0.00 0.00 2.34
172 173 2.841795 CTCCTCCCCTACAAACCCTAA 58.158 52.381 0.00 0.00 0.00 2.69
173 174 1.624391 GCTCCTCCCCTACAAACCCTA 60.624 57.143 0.00 0.00 0.00 3.53
174 175 0.914902 GCTCCTCCCCTACAAACCCT 60.915 60.000 0.00 0.00 0.00 4.34
175 176 1.608154 GCTCCTCCCCTACAAACCC 59.392 63.158 0.00 0.00 0.00 4.11
176 177 1.221021 CGCTCCTCCCCTACAAACC 59.779 63.158 0.00 0.00 0.00 3.27
177 178 1.221021 CCGCTCCTCCCCTACAAAC 59.779 63.158 0.00 0.00 0.00 2.93
178 179 2.666098 GCCGCTCCTCCCCTACAAA 61.666 63.158 0.00 0.00 0.00 2.83
179 180 3.081409 GCCGCTCCTCCCCTACAA 61.081 66.667 0.00 0.00 0.00 2.41
195 196 4.752879 TGTAGAACCCAGCCGCGC 62.753 66.667 0.00 0.00 0.00 6.86
196 197 2.509336 CTGTAGAACCCAGCCGCG 60.509 66.667 0.00 0.00 0.00 6.46
197 198 2.125106 CCTGTAGAACCCAGCCGC 60.125 66.667 0.00 0.00 0.00 6.53
198 199 2.584608 CCCTGTAGAACCCAGCCG 59.415 66.667 0.00 0.00 0.00 5.52
199 200 1.615424 TCCCCTGTAGAACCCAGCC 60.615 63.158 0.00 0.00 0.00 4.85
200 201 1.627297 CCTCCCCTGTAGAACCCAGC 61.627 65.000 0.00 0.00 0.00 4.85
201 202 0.042731 TCCTCCCCTGTAGAACCCAG 59.957 60.000 0.00 0.00 0.00 4.45
202 203 0.042731 CTCCTCCCCTGTAGAACCCA 59.957 60.000 0.00 0.00 0.00 4.51
203 204 0.691413 CCTCCTCCCCTGTAGAACCC 60.691 65.000 0.00 0.00 0.00 4.11
204 205 1.338890 GCCTCCTCCCCTGTAGAACC 61.339 65.000 0.00 0.00 0.00 3.62
205 206 0.617820 TGCCTCCTCCCCTGTAGAAC 60.618 60.000 0.00 0.00 0.00 3.01
206 207 0.118346 TTGCCTCCTCCCCTGTAGAA 59.882 55.000 0.00 0.00 0.00 2.10
207 208 0.617820 GTTGCCTCCTCCCCTGTAGA 60.618 60.000 0.00 0.00 0.00 2.59
208 209 0.909610 TGTTGCCTCCTCCCCTGTAG 60.910 60.000 0.00 0.00 0.00 2.74
209 210 1.159905 TGTTGCCTCCTCCCCTGTA 59.840 57.895 0.00 0.00 0.00 2.74
210 211 2.121963 TGTTGCCTCCTCCCCTGT 60.122 61.111 0.00 0.00 0.00 4.00
211 212 2.352805 GTGTTGCCTCCTCCCCTG 59.647 66.667 0.00 0.00 0.00 4.45
212 213 3.322466 CGTGTTGCCTCCTCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
223 224 4.680237 TCTCCCAGCCGCGTGTTG 62.680 66.667 4.92 4.86 0.00 3.33
224 225 3.883744 CTTCTCCCAGCCGCGTGTT 62.884 63.158 4.92 0.00 0.00 3.32
225 226 4.379243 CTTCTCCCAGCCGCGTGT 62.379 66.667 4.92 0.00 0.00 4.49
229 230 3.435186 GTTGCTTCTCCCAGCCGC 61.435 66.667 0.00 0.00 39.25 6.53
230 231 3.121030 CGTTGCTTCTCCCAGCCG 61.121 66.667 0.00 0.00 39.25 5.52
231 232 3.435186 GCGTTGCTTCTCCCAGCC 61.435 66.667 0.00 0.00 39.25 4.85
232 233 3.793144 CGCGTTGCTTCTCCCAGC 61.793 66.667 0.00 0.00 40.55 4.85
233 234 3.793144 GCGCGTTGCTTCTCCCAG 61.793 66.667 8.43 0.00 41.73 4.45
266 267 2.396955 CGCTGCTTCTGCTTCCCAG 61.397 63.158 0.00 0.00 43.17 4.45
267 268 2.359107 CGCTGCTTCTGCTTCCCA 60.359 61.111 0.00 0.00 40.48 4.37
268 269 3.808656 GCGCTGCTTCTGCTTCCC 61.809 66.667 0.00 0.00 40.48 3.97
269 270 4.157958 CGCGCTGCTTCTGCTTCC 62.158 66.667 5.56 0.00 40.48 3.46
270 271 4.157958 CCGCGCTGCTTCTGCTTC 62.158 66.667 5.56 0.00 40.48 3.86
288 289 3.402681 ATCACGCCCACCCTCCTG 61.403 66.667 0.00 0.00 0.00 3.86
289 290 3.402681 CATCACGCCCACCCTCCT 61.403 66.667 0.00 0.00 0.00 3.69
290 291 3.717294 ACATCACGCCCACCCTCC 61.717 66.667 0.00 0.00 0.00 4.30
291 292 2.436646 CACATCACGCCCACCCTC 60.437 66.667 0.00 0.00 0.00 4.30
292 293 4.722700 GCACATCACGCCCACCCT 62.723 66.667 0.00 0.00 0.00 4.34
303 304 4.865761 TAGTCGCCGCCGCACATC 62.866 66.667 0.00 0.00 34.03 3.06
304 305 4.873129 CTAGTCGCCGCCGCACAT 62.873 66.667 0.00 0.00 34.03 3.21
345 346 4.577246 GACCTAGCTGCCTCCGCG 62.577 72.222 0.00 0.00 38.08 6.46
346 347 3.438017 CTGACCTAGCTGCCTCCGC 62.438 68.421 0.00 0.00 0.00 5.54
347 348 2.811101 CTGACCTAGCTGCCTCCG 59.189 66.667 0.00 0.00 0.00 4.63
356 357 3.905678 CTCCCGCCGCTGACCTAG 61.906 72.222 0.00 0.00 0.00 3.02
370 371 4.214327 CTTCTCCCGCGCTCCTCC 62.214 72.222 5.56 0.00 0.00 4.30
371 372 4.214327 CCTTCTCCCGCGCTCCTC 62.214 72.222 5.56 0.00 0.00 3.71
372 373 4.761058 TCCTTCTCCCGCGCTCCT 62.761 66.667 5.56 0.00 0.00 3.69
373 374 4.516195 GTCCTTCTCCCGCGCTCC 62.516 72.222 5.56 0.00 0.00 4.70
374 375 4.516195 GGTCCTTCTCCCGCGCTC 62.516 72.222 5.56 0.00 0.00 5.03
377 378 4.194720 CTCGGTCCTTCTCCCGCG 62.195 72.222 0.00 0.00 43.87 6.46
378 379 1.318158 TAACTCGGTCCTTCTCCCGC 61.318 60.000 0.00 0.00 43.87 6.13
379 380 0.739561 CTAACTCGGTCCTTCTCCCG 59.260 60.000 0.00 0.00 45.55 5.14
380 381 1.112950 CCTAACTCGGTCCTTCTCCC 58.887 60.000 0.00 0.00 0.00 4.30
381 382 0.460722 GCCTAACTCGGTCCTTCTCC 59.539 60.000 0.00 0.00 0.00 3.71
382 383 1.135333 CAGCCTAACTCGGTCCTTCTC 59.865 57.143 0.00 0.00 0.00 2.87
383 384 1.187087 CAGCCTAACTCGGTCCTTCT 58.813 55.000 0.00 0.00 0.00 2.85
384 385 1.183549 TCAGCCTAACTCGGTCCTTC 58.816 55.000 0.00 0.00 0.00 3.46
385 386 1.867363 ATCAGCCTAACTCGGTCCTT 58.133 50.000 0.00 0.00 0.00 3.36
386 387 2.308690 GTATCAGCCTAACTCGGTCCT 58.691 52.381 0.00 0.00 0.00 3.85
387 388 1.340568 GGTATCAGCCTAACTCGGTCC 59.659 57.143 0.00 0.00 0.00 4.46
388 389 2.029623 TGGTATCAGCCTAACTCGGTC 58.970 52.381 0.00 0.00 0.00 4.79
389 390 2.154567 TGGTATCAGCCTAACTCGGT 57.845 50.000 0.00 0.00 0.00 4.69
390 391 5.886474 TCTATATGGTATCAGCCTAACTCGG 59.114 44.000 0.00 0.00 0.00 4.63
391 392 6.038825 CCTCTATATGGTATCAGCCTAACTCG 59.961 46.154 0.00 0.00 0.00 4.18
392 393 7.120051 TCCTCTATATGGTATCAGCCTAACTC 58.880 42.308 0.00 0.00 0.00 3.01
393 394 7.045693 TCCTCTATATGGTATCAGCCTAACT 57.954 40.000 0.00 0.00 0.00 2.24
394 395 7.906199 ATCCTCTATATGGTATCAGCCTAAC 57.094 40.000 0.00 0.00 0.00 2.34
395 396 7.345653 CCAATCCTCTATATGGTATCAGCCTAA 59.654 40.741 0.00 0.00 0.00 2.69
396 397 6.841229 CCAATCCTCTATATGGTATCAGCCTA 59.159 42.308 0.00 0.00 0.00 3.93
397 398 5.664908 CCAATCCTCTATATGGTATCAGCCT 59.335 44.000 0.00 0.00 0.00 4.58
398 399 5.426833 ACCAATCCTCTATATGGTATCAGCC 59.573 44.000 0.00 0.00 44.11 4.85
399 400 6.344500 CACCAATCCTCTATATGGTATCAGC 58.656 44.000 0.00 0.00 44.12 4.26
400 401 6.070596 TGCACCAATCCTCTATATGGTATCAG 60.071 42.308 0.00 0.00 44.12 2.90
401 402 5.784906 TGCACCAATCCTCTATATGGTATCA 59.215 40.000 0.00 0.00 44.12 2.15
402 403 6.299805 TGCACCAATCCTCTATATGGTATC 57.700 41.667 0.00 0.00 44.12 2.24
403 404 6.702449 TTGCACCAATCCTCTATATGGTAT 57.298 37.500 0.00 0.00 44.12 2.73
404 405 6.702449 ATTGCACCAATCCTCTATATGGTA 57.298 37.500 0.00 0.00 44.12 3.25
405 406 5.589367 ATTGCACCAATCCTCTATATGGT 57.411 39.130 0.00 0.00 46.80 3.55
406 407 6.005823 TGAATTGCACCAATCCTCTATATGG 58.994 40.000 0.00 0.00 32.43 2.74
407 408 6.347969 CGTGAATTGCACCAATCCTCTATATG 60.348 42.308 0.00 0.00 44.85 1.78
408 409 5.702670 CGTGAATTGCACCAATCCTCTATAT 59.297 40.000 0.00 0.00 44.85 0.86
409 410 5.056480 CGTGAATTGCACCAATCCTCTATA 58.944 41.667 0.00 0.00 44.85 1.31
410 411 3.879295 CGTGAATTGCACCAATCCTCTAT 59.121 43.478 0.00 0.00 44.85 1.98
411 412 3.055458 TCGTGAATTGCACCAATCCTCTA 60.055 43.478 0.00 0.00 44.85 2.43
412 413 2.086869 CGTGAATTGCACCAATCCTCT 58.913 47.619 0.00 0.00 44.85 3.69
413 414 2.083774 TCGTGAATTGCACCAATCCTC 58.916 47.619 0.00 0.00 44.85 3.71
414 415 2.198827 TCGTGAATTGCACCAATCCT 57.801 45.000 0.00 0.00 44.85 3.24
415 416 4.836125 ATATCGTGAATTGCACCAATCC 57.164 40.909 0.00 0.00 44.85 3.01
416 417 7.584108 TCAATATATCGTGAATTGCACCAATC 58.416 34.615 0.00 0.00 44.85 2.67
417 418 7.509141 TCAATATATCGTGAATTGCACCAAT 57.491 32.000 0.00 0.00 44.85 3.16
418 419 6.934048 TCAATATATCGTGAATTGCACCAA 57.066 33.333 0.00 0.00 44.85 3.67
419 420 7.334171 CCTATCAATATATCGTGAATTGCACCA 59.666 37.037 0.00 0.00 44.85 4.17
420 421 7.549134 TCCTATCAATATATCGTGAATTGCACC 59.451 37.037 0.00 0.00 44.85 5.01
421 422 8.479313 TCCTATCAATATATCGTGAATTGCAC 57.521 34.615 0.00 0.00 44.21 4.57
422 423 9.101655 CATCCTATCAATATATCGTGAATTGCA 57.898 33.333 0.00 0.00 31.98 4.08
423 424 8.066595 GCATCCTATCAATATATCGTGAATTGC 58.933 37.037 0.00 0.00 31.98 3.56
424 425 9.101655 TGCATCCTATCAATATATCGTGAATTG 57.898 33.333 0.00 0.00 32.96 2.32
425 426 9.842775 ATGCATCCTATCAATATATCGTGAATT 57.157 29.630 0.00 0.00 0.00 2.17
428 429 9.918630 CATATGCATCCTATCAATATATCGTGA 57.081 33.333 0.19 0.00 0.00 4.35
429 430 8.654215 GCATATGCATCCTATCAATATATCGTG 58.346 37.037 22.84 0.00 41.59 4.35
430 431 8.768957 GCATATGCATCCTATCAATATATCGT 57.231 34.615 22.84 0.00 41.59 3.73
448 449 2.866156 ACACATAGACACGTGCATATGC 59.134 45.455 27.65 21.09 42.50 3.14
449 450 3.865164 ACACACATAGACACGTGCATATG 59.135 43.478 26.76 26.76 36.57 1.78
450 451 3.865164 CACACACATAGACACGTGCATAT 59.135 43.478 17.22 11.28 36.57 1.78
451 452 3.249917 CACACACATAGACACGTGCATA 58.750 45.455 17.22 9.21 36.57 3.14
452 453 2.068519 CACACACATAGACACGTGCAT 58.931 47.619 17.22 6.92 36.57 3.96
453 454 1.202475 ACACACACATAGACACGTGCA 60.202 47.619 17.22 0.82 36.57 4.57
454 455 1.192312 CACACACACATAGACACGTGC 59.808 52.381 17.22 8.74 36.57 5.34
455 456 2.218530 CACACACACACATAGACACGTG 59.781 50.000 15.48 15.48 39.10 4.49
456 457 2.159156 ACACACACACACATAGACACGT 60.159 45.455 0.00 0.00 0.00 4.49
457 458 2.218530 CACACACACACACATAGACACG 59.781 50.000 0.00 0.00 0.00 4.49
458 459 3.001228 CACACACACACACACATAGACAC 59.999 47.826 0.00 0.00 0.00 3.67
459 460 3.194062 CACACACACACACACATAGACA 58.806 45.455 0.00 0.00 0.00 3.41
460 461 3.001228 CACACACACACACACACATAGAC 59.999 47.826 0.00 0.00 0.00 2.59
461 462 3.194062 CACACACACACACACACATAGA 58.806 45.455 0.00 0.00 0.00 1.98
462 463 2.935849 ACACACACACACACACACATAG 59.064 45.455 0.00 0.00 0.00 2.23
463 464 2.979240 ACACACACACACACACACATA 58.021 42.857 0.00 0.00 0.00 2.29
464 465 1.819928 ACACACACACACACACACAT 58.180 45.000 0.00 0.00 0.00 3.21
465 466 2.070028 GTACACACACACACACACACA 58.930 47.619 0.00 0.00 0.00 3.72
466 467 2.070028 TGTACACACACACACACACAC 58.930 47.619 0.00 0.00 0.00 3.82
467 468 2.457366 TGTACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
468 469 2.095213 CCTTGTACACACACACACACAC 59.905 50.000 0.00 0.00 33.30 3.82
469 470 2.351455 CCTTGTACACACACACACACA 58.649 47.619 0.00 0.00 33.30 3.72
470 471 1.668751 CCCTTGTACACACACACACAC 59.331 52.381 0.00 0.00 33.30 3.82
471 472 1.407575 CCCCTTGTACACACACACACA 60.408 52.381 0.00 0.00 33.30 3.72
472 473 1.134340 TCCCCTTGTACACACACACAC 60.134 52.381 0.00 0.00 33.30 3.82
473 474 1.140052 CTCCCCTTGTACACACACACA 59.860 52.381 0.00 0.00 33.30 3.72
474 475 1.140252 ACTCCCCTTGTACACACACAC 59.860 52.381 0.00 0.00 33.30 3.82
475 476 1.414919 GACTCCCCTTGTACACACACA 59.585 52.381 0.00 0.00 33.30 3.72
476 477 1.414919 TGACTCCCCTTGTACACACAC 59.585 52.381 0.00 0.00 33.30 3.82
477 478 1.414919 GTGACTCCCCTTGTACACACA 59.585 52.381 0.00 0.00 0.00 3.72
478 479 1.604693 CGTGACTCCCCTTGTACACAC 60.605 57.143 0.00 0.00 0.00 3.82
479 480 0.677288 CGTGACTCCCCTTGTACACA 59.323 55.000 0.00 0.00 0.00 3.72
480 481 0.677842 ACGTGACTCCCCTTGTACAC 59.322 55.000 0.00 0.00 0.00 2.90
481 482 0.963962 GACGTGACTCCCCTTGTACA 59.036 55.000 0.00 0.00 0.00 2.90
482 483 0.245813 GGACGTGACTCCCCTTGTAC 59.754 60.000 0.00 0.00 0.00 2.90
483 484 0.113776 AGGACGTGACTCCCCTTGTA 59.886 55.000 0.00 0.00 0.00 2.41
484 485 1.152312 AGGACGTGACTCCCCTTGT 60.152 57.895 0.00 0.00 0.00 3.16
485 486 1.185618 TGAGGACGTGACTCCCCTTG 61.186 60.000 12.75 0.00 34.06 3.61
486 487 0.471211 TTGAGGACGTGACTCCCCTT 60.471 55.000 12.75 0.00 34.06 3.95
487 488 1.155390 TTGAGGACGTGACTCCCCT 59.845 57.895 12.75 2.88 34.06 4.79
488 489 1.186267 AGTTGAGGACGTGACTCCCC 61.186 60.000 12.75 0.00 34.06 4.81
489 490 1.542492 TAGTTGAGGACGTGACTCCC 58.458 55.000 12.75 0.00 34.06 4.30
490 491 3.693085 TGTATAGTTGAGGACGTGACTCC 59.307 47.826 12.75 0.00 34.06 3.85
491 492 4.201930 CCTGTATAGTTGAGGACGTGACTC 60.202 50.000 9.34 9.34 35.55 3.36
492 493 3.695060 CCTGTATAGTTGAGGACGTGACT 59.305 47.826 0.00 0.00 0.00 3.41
493 494 3.181489 CCCTGTATAGTTGAGGACGTGAC 60.181 52.174 0.00 0.00 0.00 3.67
494 495 3.021695 CCCTGTATAGTTGAGGACGTGA 58.978 50.000 0.00 0.00 0.00 4.35
495 496 3.021695 TCCCTGTATAGTTGAGGACGTG 58.978 50.000 0.00 0.00 0.00 4.49
496 497 3.377253 TCCCTGTATAGTTGAGGACGT 57.623 47.619 0.00 0.00 0.00 4.34
497 498 3.700038 ACTTCCCTGTATAGTTGAGGACG 59.300 47.826 0.00 0.00 0.00 4.79
498 499 5.302313 CCTACTTCCCTGTATAGTTGAGGAC 59.698 48.000 0.00 0.00 0.00 3.85
499 500 5.195146 TCCTACTTCCCTGTATAGTTGAGGA 59.805 44.000 0.00 0.00 28.79 3.71
500 501 5.455872 TCCTACTTCCCTGTATAGTTGAGG 58.544 45.833 0.00 0.00 0.00 3.86
501 502 6.041069 CCTTCCTACTTCCCTGTATAGTTGAG 59.959 46.154 0.00 0.00 0.00 3.02
502 503 5.897824 CCTTCCTACTTCCCTGTATAGTTGA 59.102 44.000 0.00 0.00 0.00 3.18
503 504 5.453480 GCCTTCCTACTTCCCTGTATAGTTG 60.453 48.000 0.00 0.00 0.00 3.16
504 505 4.654724 GCCTTCCTACTTCCCTGTATAGTT 59.345 45.833 0.00 0.00 0.00 2.24
505 506 4.078513 AGCCTTCCTACTTCCCTGTATAGT 60.079 45.833 0.00 0.00 0.00 2.12
506 507 4.484912 AGCCTTCCTACTTCCCTGTATAG 58.515 47.826 0.00 0.00 0.00 1.31
507 508 4.554553 AGCCTTCCTACTTCCCTGTATA 57.445 45.455 0.00 0.00 0.00 1.47
508 509 3.423058 AGCCTTCCTACTTCCCTGTAT 57.577 47.619 0.00 0.00 0.00 2.29
509 510 2.838202 CAAGCCTTCCTACTTCCCTGTA 59.162 50.000 0.00 0.00 0.00 2.74
510 511 1.630878 CAAGCCTTCCTACTTCCCTGT 59.369 52.381 0.00 0.00 0.00 4.00
511 512 1.630878 ACAAGCCTTCCTACTTCCCTG 59.369 52.381 0.00 0.00 0.00 4.45
512 513 2.040412 CAACAAGCCTTCCTACTTCCCT 59.960 50.000 0.00 0.00 0.00 4.20
513 514 2.224793 ACAACAAGCCTTCCTACTTCCC 60.225 50.000 0.00 0.00 0.00 3.97
514 515 3.141767 ACAACAAGCCTTCCTACTTCC 57.858 47.619 0.00 0.00 0.00 3.46
515 516 4.638304 TGTACAACAAGCCTTCCTACTTC 58.362 43.478 0.00 0.00 0.00 3.01
516 517 4.699925 TGTACAACAAGCCTTCCTACTT 57.300 40.909 0.00 0.00 0.00 2.24
517 518 4.699925 TTGTACAACAAGCCTTCCTACT 57.300 40.909 3.59 0.00 32.34 2.57
528 529 7.032377 TGCATGTGTATTTCTTGTACAACAA 57.968 32.000 3.59 0.00 36.54 2.83
529 530 6.625873 TGCATGTGTATTTCTTGTACAACA 57.374 33.333 3.59 0.00 34.15 3.33
530 531 6.915300 TGTTGCATGTGTATTTCTTGTACAAC 59.085 34.615 3.59 0.00 34.15 3.32
531 532 7.032377 TGTTGCATGTGTATTTCTTGTACAA 57.968 32.000 8.28 8.28 34.15 2.41
532 533 6.625873 TGTTGCATGTGTATTTCTTGTACA 57.374 33.333 0.00 0.00 0.00 2.90
535 536 8.955388 TGTATATGTTGCATGTGTATTTCTTGT 58.045 29.630 0.00 0.00 0.00 3.16
536 537 9.955208 ATGTATATGTTGCATGTGTATTTCTTG 57.045 29.630 0.00 0.00 0.00 3.02
538 539 9.565090 AGATGTATATGTTGCATGTGTATTTCT 57.435 29.630 0.00 0.00 29.94 2.52
539 540 9.817365 GAGATGTATATGTTGCATGTGTATTTC 57.183 33.333 0.00 0.00 29.94 2.17
540 541 9.341078 TGAGATGTATATGTTGCATGTGTATTT 57.659 29.630 0.00 0.00 29.94 1.40
541 542 8.907222 TGAGATGTATATGTTGCATGTGTATT 57.093 30.769 0.00 0.00 29.94 1.89
542 543 8.777413 GTTGAGATGTATATGTTGCATGTGTAT 58.223 33.333 0.00 0.00 29.94 2.29
543 544 7.768120 TGTTGAGATGTATATGTTGCATGTGTA 59.232 33.333 0.00 0.00 29.94 2.90
544 545 6.598850 TGTTGAGATGTATATGTTGCATGTGT 59.401 34.615 0.00 0.00 29.94 3.72
545 546 7.018635 TGTTGAGATGTATATGTTGCATGTG 57.981 36.000 0.00 0.00 29.94 3.21
546 547 7.812690 ATGTTGAGATGTATATGTTGCATGT 57.187 32.000 0.00 0.00 29.94 3.21
559 560 9.950496 GAATAGGACCAATATATGTTGAGATGT 57.050 33.333 13.30 3.08 0.00 3.06
565 566 9.784531 ACTCAAGAATAGGACCAATATATGTTG 57.215 33.333 5.27 5.27 0.00 3.33
578 579 9.581289 TTTGGTCATTTTTACTCAAGAATAGGA 57.419 29.630 0.00 0.00 0.00 2.94
585 586 7.707104 ACTCACTTTGGTCATTTTTACTCAAG 58.293 34.615 0.00 0.00 0.00 3.02
609 610 4.146443 GCAGCTTGTATTTGTGTCGAAAAC 59.854 41.667 0.00 0.00 0.00 2.43
610 611 4.286910 GCAGCTTGTATTTGTGTCGAAAA 58.713 39.130 0.00 0.00 0.00 2.29
614 615 1.535028 TGGCAGCTTGTATTTGTGTCG 59.465 47.619 0.00 0.00 0.00 4.35
689 704 0.095245 CAAATGCTGCACCGTACTCG 59.905 55.000 3.57 0.00 0.00 4.18
773 794 5.619309 GCTGAGGGTAGAAAAATTCCGTTTC 60.619 44.000 0.00 0.00 35.60 2.78
965 991 4.929479 AGACTAGTGAGGACTTGTGAGAT 58.071 43.478 0.00 0.00 38.15 2.75
969 995 4.142271 GGATGAGACTAGTGAGGACTTGTG 60.142 50.000 0.00 0.00 38.15 3.33
970 996 4.020543 GGATGAGACTAGTGAGGACTTGT 58.979 47.826 0.00 0.00 40.36 3.16
971 997 3.066064 CGGATGAGACTAGTGAGGACTTG 59.934 52.174 0.00 0.00 33.21 3.16
989 1015 2.365617 CAAGTAGCCATACAGGACGGAT 59.634 50.000 0.00 0.00 41.22 4.18
990 1016 1.754803 CAAGTAGCCATACAGGACGGA 59.245 52.381 0.00 0.00 41.22 4.69
1281 1316 1.303074 CTTGCTCTGGCCTCTGCAA 60.303 57.895 21.73 21.73 42.16 4.08
1394 1429 0.543749 GAGATACCTGGCAACCTGCT 59.456 55.000 0.00 0.00 44.28 4.24
1406 1441 5.420409 CAAGGTAGTTGTTCCAGAGATACC 58.580 45.833 0.00 0.00 33.02 2.73
1410 1445 2.038557 GCCAAGGTAGTTGTTCCAGAGA 59.961 50.000 0.00 0.00 33.87 3.10
1524 1559 4.388499 TTCTTCAGGTCCGCGGCC 62.388 66.667 23.51 24.64 0.00 6.13
1528 1563 1.549170 TCCTAAGTTCTTCAGGTCCGC 59.451 52.381 0.00 0.00 0.00 5.54
1530 1565 5.485209 TCTTTCCTAAGTTCTTCAGGTCC 57.515 43.478 0.00 0.00 32.98 4.46
1542 1577 2.762535 TGCCTCCGTTCTTTCCTAAG 57.237 50.000 0.00 0.00 0.00 2.18
1545 1580 1.056660 TCTTGCCTCCGTTCTTTCCT 58.943 50.000 0.00 0.00 0.00 3.36
1569 1604 4.030452 GGTGCCACGCTCAGCAAC 62.030 66.667 0.00 0.00 41.48 4.17
1590 1625 0.552848 ATTCATCTGGGAACGGGCAT 59.447 50.000 0.00 0.00 37.31 4.40
1602 1637 2.367202 ACCGCCGTCCCATTCATCT 61.367 57.895 0.00 0.00 0.00 2.90
1671 1706 1.883638 GCACTGAACTGGCATTCCTCA 60.884 52.381 0.00 0.00 0.00 3.86
1893 1928 4.129737 GAGCTGTAGCCCGTGCGA 62.130 66.667 0.00 0.00 44.33 5.10
1957 1995 3.263170 AGATACCCACATGCAACACACTA 59.737 43.478 0.00 0.00 0.00 2.74
2042 2083 8.621286 GGTAACAAATTCGAGATATGGACAAAT 58.379 33.333 0.00 0.00 0.00 2.32
2098 2139 3.765511 ACGATAAGCTAACCACACTACCA 59.234 43.478 0.00 0.00 0.00 3.25
2100 2141 5.166398 ACAACGATAAGCTAACCACACTAC 58.834 41.667 0.00 0.00 0.00 2.73
2107 2148 5.077424 CACGAAAACAACGATAAGCTAACC 58.923 41.667 0.00 0.00 34.70 2.85
2115 2156 5.801444 ACGACATATCACGAAAACAACGATA 59.199 36.000 0.00 0.00 34.70 2.92
2119 2160 5.671140 GCATACGACATATCACGAAAACAAC 59.329 40.000 0.00 0.00 0.00 3.32
2126 2167 3.982576 ACTGCATACGACATATCACGA 57.017 42.857 0.00 0.00 0.00 4.35
2127 2168 4.558860 CCATACTGCATACGACATATCACG 59.441 45.833 0.00 0.00 0.00 4.35
2132 2173 5.068591 ACACTTCCATACTGCATACGACATA 59.931 40.000 0.00 0.00 0.00 2.29
2148 2189 3.071892 AGGTGAAAATACCGACACTTCCA 59.928 43.478 0.00 0.00 45.56 3.53
2263 2304 9.127277 GGAGCCAAGTTAAATATATACACCAAA 57.873 33.333 0.00 0.00 0.00 3.28
2264 2305 8.499406 AGGAGCCAAGTTAAATATATACACCAA 58.501 33.333 0.00 0.00 0.00 3.67
2265 2306 8.041143 AGGAGCCAAGTTAAATATATACACCA 57.959 34.615 0.00 0.00 0.00 4.17
2748 2789 1.300233 CCCTCTTATCGTCGCTGCC 60.300 63.158 0.00 0.00 0.00 4.85
2749 2790 1.951631 GCCCTCTTATCGTCGCTGC 60.952 63.158 0.00 0.00 0.00 5.25
2750 2791 0.179111 TTGCCCTCTTATCGTCGCTG 60.179 55.000 0.00 0.00 0.00 5.18
2751 2792 0.103208 CTTGCCCTCTTATCGTCGCT 59.897 55.000 0.00 0.00 0.00 4.93
2752 2793 0.876342 CCTTGCCCTCTTATCGTCGC 60.876 60.000 0.00 0.00 0.00 5.19
2753 2794 0.744874 TCCTTGCCCTCTTATCGTCG 59.255 55.000 0.00 0.00 0.00 5.12
2754 2795 2.483889 CCTTCCTTGCCCTCTTATCGTC 60.484 54.545 0.00 0.00 0.00 4.20
2755 2796 1.486726 CCTTCCTTGCCCTCTTATCGT 59.513 52.381 0.00 0.00 0.00 3.73
2756 2797 1.762957 TCCTTCCTTGCCCTCTTATCG 59.237 52.381 0.00 0.00 0.00 2.92
2757 2798 2.105649 CCTCCTTCCTTGCCCTCTTATC 59.894 54.545 0.00 0.00 0.00 1.75
2758 2799 2.131023 CCTCCTTCCTTGCCCTCTTAT 58.869 52.381 0.00 0.00 0.00 1.73
2759 2800 1.584724 CCTCCTTCCTTGCCCTCTTA 58.415 55.000 0.00 0.00 0.00 2.10
2760 2801 1.210885 CCCTCCTTCCTTGCCCTCTT 61.211 60.000 0.00 0.00 0.00 2.85
2761 2802 1.617839 CCCTCCTTCCTTGCCCTCT 60.618 63.158 0.00 0.00 0.00 3.69
2762 2803 2.684499 CCCCTCCTTCCTTGCCCTC 61.684 68.421 0.00 0.00 0.00 4.30
2763 2804 2.615288 CCCCTCCTTCCTTGCCCT 60.615 66.667 0.00 0.00 0.00 5.19
2764 2805 2.941583 ACCCCTCCTTCCTTGCCC 60.942 66.667 0.00 0.00 0.00 5.36
2765 2806 2.677848 GACCCCTCCTTCCTTGCC 59.322 66.667 0.00 0.00 0.00 4.52
2766 2807 2.231380 TGGACCCCTCCTTCCTTGC 61.231 63.158 0.00 0.00 37.48 4.01
2767 2808 0.842467 AGTGGACCCCTCCTTCCTTG 60.842 60.000 0.00 0.00 37.48 3.61
2768 2809 0.797579 TAGTGGACCCCTCCTTCCTT 59.202 55.000 0.00 0.00 37.48 3.36
2769 2810 1.027815 ATAGTGGACCCCTCCTTCCT 58.972 55.000 0.00 0.00 37.48 3.36
2770 2811 1.132500 CATAGTGGACCCCTCCTTCC 58.868 60.000 0.00 0.00 37.48 3.46
2771 2812 1.132500 CCATAGTGGACCCCTCCTTC 58.868 60.000 0.00 0.00 40.96 3.46
2772 2813 0.327576 CCCATAGTGGACCCCTCCTT 60.328 60.000 0.00 0.00 40.96 3.36
2773 2814 1.318380 CCCATAGTGGACCCCTCCT 59.682 63.158 0.00 0.00 40.96 3.69
2774 2815 1.770518 CCCCATAGTGGACCCCTCC 60.771 68.421 0.00 0.00 40.96 4.30
2775 2816 2.452937 GCCCCATAGTGGACCCCTC 61.453 68.421 0.00 0.00 40.96 4.30
2776 2817 2.368329 GCCCCATAGTGGACCCCT 60.368 66.667 0.00 0.00 40.96 4.79
2777 2818 1.655114 AATGCCCCATAGTGGACCCC 61.655 60.000 0.00 0.00 40.96 4.95
2778 2819 0.178990 GAATGCCCCATAGTGGACCC 60.179 60.000 0.00 0.00 40.96 4.46
2779 2820 0.846693 AGAATGCCCCATAGTGGACC 59.153 55.000 0.00 0.00 40.96 4.46
2780 2821 1.771255 AGAGAATGCCCCATAGTGGAC 59.229 52.381 0.00 0.00 40.96 4.02
2788 2829 2.627699 GTCAACAAAAGAGAATGCCCCA 59.372 45.455 0.00 0.00 0.00 4.96
2846 2887 2.341257 CACCCTGAGAACAGATTCACG 58.659 52.381 0.00 0.00 46.03 4.35
2856 2897 2.504175 GCTACAATACCCACCCTGAGAA 59.496 50.000 0.00 0.00 0.00 2.87
2861 2902 0.546598 GCTGCTACAATACCCACCCT 59.453 55.000 0.00 0.00 0.00 4.34
2862 2903 0.546598 AGCTGCTACAATACCCACCC 59.453 55.000 0.00 0.00 0.00 4.61
2866 2907 4.703897 TCACATTAGCTGCTACAATACCC 58.296 43.478 9.27 0.00 0.00 3.69
2903 2944 1.670811 CAATGTCTCCCGCCACATTAC 59.329 52.381 0.00 0.00 40.52 1.89
2905 2946 0.680921 CCAATGTCTCCCGCCACATT 60.681 55.000 0.00 0.00 42.73 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.