Multiple sequence alignment - TraesCS3B01G404900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G404900 chr3B 100.000 6985 0 0 1 6985 640077374 640070390 0.000000e+00 12899.0
1 TraesCS3B01G404900 chr3B 95.993 574 19 2 1 573 59237082 59236512 0.000000e+00 929.0
2 TraesCS3B01G404900 chr3B 94.958 595 21 6 1 589 101260656 101261247 0.000000e+00 924.0
3 TraesCS3B01G404900 chr3B 88.065 310 23 11 4468 4767 345998941 345998636 8.620000e-94 355.0
4 TraesCS3B01G404900 chr3B 89.055 201 16 6 582 776 92987973 92987773 1.950000e-60 244.0
5 TraesCS3B01G404900 chr3D 95.825 3545 97 22 902 4410 479630938 479627409 0.000000e+00 5679.0
6 TraesCS3B01G404900 chr3D 92.673 2252 97 37 4762 6977 479626832 479624613 0.000000e+00 3182.0
7 TraesCS3B01G404900 chr3D 89.610 308 21 6 4468 4765 394053354 394053660 1.420000e-101 381.0
8 TraesCS3B01G404900 chr3D 89.032 310 21 7 4469 4767 434949772 434949465 8.560000e-99 372.0
9 TraesCS3B01G404900 chr3A 94.092 3470 143 30 780 4205 623062884 623059433 0.000000e+00 5216.0
10 TraesCS3B01G404900 chr3A 89.170 2216 137 43 4762 6893 623058903 623056707 0.000000e+00 2667.0
11 TraesCS3B01G404900 chr3A 92.727 110 8 0 4300 4409 30398824 30398715 7.250000e-35 159.0
12 TraesCS3B01G404900 chr3A 87.302 63 2 3 4414 4476 623058951 623058895 4.520000e-07 67.6
13 TraesCS3B01G404900 chr7B 96.886 578 14 2 1 578 113207269 113206696 0.000000e+00 965.0
14 TraesCS3B01G404900 chr7B 96.348 575 17 2 1 574 27612871 27613442 0.000000e+00 942.0
15 TraesCS3B01G404900 chr7B 96.161 573 18 3 1 572 164083573 164084142 0.000000e+00 933.0
16 TraesCS3B01G404900 chr7B 88.557 201 17 6 582 776 449448087 449447887 9.050000e-59 239.0
17 TraesCS3B01G404900 chr7B 86.364 132 12 2 4275 4400 541688140 541688271 9.450000e-29 139.0
18 TraesCS3B01G404900 chr7B 88.991 109 10 1 4297 4403 218816784 218816892 4.400000e-27 134.0
19 TraesCS3B01G404900 chr2B 96.864 574 15 1 1 574 736388170 736388740 0.000000e+00 957.0
20 TraesCS3B01G404900 chr2B 96.329 572 14 2 1 572 210267140 210267704 0.000000e+00 933.0
21 TraesCS3B01G404900 chr6B 96.853 572 15 1 1 572 120822670 120822102 0.000000e+00 953.0
22 TraesCS3B01G404900 chr6B 86.029 136 10 4 4275 4410 469300843 469300969 3.400000e-28 137.0
23 TraesCS3B01G404900 chr4B 95.509 579 20 6 1 577 481634422 481633848 0.000000e+00 920.0
24 TraesCS3B01G404900 chr7D 90.820 305 17 7 4469 4764 517004060 517003758 1.410000e-106 398.0
25 TraesCS3B01G404900 chr7D 87.821 312 28 6 4468 4770 304103413 304103103 2.400000e-94 357.0
26 TraesCS3B01G404900 chr1D 89.542 306 21 8 4469 4764 202027805 202027501 1.840000e-100 377.0
27 TraesCS3B01G404900 chr1D 88.852 305 23 8 4469 4764 63558874 63559176 1.430000e-96 364.0
28 TraesCS3B01G404900 chr5A 88.141 312 26 7 4462 4764 656675321 656675630 1.850000e-95 361.0
29 TraesCS3B01G404900 chr5A 84.507 142 8 6 4276 4403 657542988 657542847 2.050000e-25 128.0
30 TraesCS3B01G404900 chr2A 88.274 307 24 9 4469 4764 223718915 223718610 2.400000e-94 357.0
31 TraesCS3B01G404900 chr1A 89.055 201 16 6 582 776 178177042 178177242 1.950000e-60 244.0
32 TraesCS3B01G404900 chr4D 88.614 202 17 6 581 776 423192162 423191961 2.520000e-59 241.0
33 TraesCS3B01G404900 chr7A 88.557 201 17 6 582 776 309060687 309060487 9.050000e-59 239.0
34 TraesCS3B01G404900 chr5D 88.557 201 17 6 582 776 176051562 176051762 9.050000e-59 239.0
35 TraesCS3B01G404900 chr5D 88.557 201 17 6 582 776 190178622 190178422 9.050000e-59 239.0
36 TraesCS3B01G404900 chr5D 88.557 201 17 6 582 776 292512094 292511894 9.050000e-59 239.0
37 TraesCS3B01G404900 chr2D 88.557 201 17 6 582 776 550341860 550342060 9.050000e-59 239.0
38 TraesCS3B01G404900 chr2D 93.396 106 7 0 4297 4402 140307741 140307846 2.610000e-34 158.0
39 TraesCS3B01G404900 chr5B 95.763 118 4 1 4299 4415 55182863 55182980 9.250000e-44 189.0
40 TraesCS3B01G404900 chr6A 93.939 99 6 0 4312 4410 412383094 412383192 4.360000e-32 150.0
41 TraesCS3B01G404900 chr6A 90.385 104 8 1 4299 4402 514023249 514023350 1.220000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G404900 chr3B 640070390 640077374 6984 True 12899.0 12899 100.000 1 6985 1 chr3B.!!$R4 6984
1 TraesCS3B01G404900 chr3B 59236512 59237082 570 True 929.0 929 95.993 1 573 1 chr3B.!!$R1 572
2 TraesCS3B01G404900 chr3B 101260656 101261247 591 False 924.0 924 94.958 1 589 1 chr3B.!!$F1 588
3 TraesCS3B01G404900 chr3D 479624613 479630938 6325 True 4430.5 5679 94.249 902 6977 2 chr3D.!!$R2 6075
4 TraesCS3B01G404900 chr3A 623056707 623062884 6177 True 2650.2 5216 90.188 780 6893 3 chr3A.!!$R2 6113
5 TraesCS3B01G404900 chr7B 113206696 113207269 573 True 965.0 965 96.886 1 578 1 chr7B.!!$R1 577
6 TraesCS3B01G404900 chr7B 27612871 27613442 571 False 942.0 942 96.348 1 574 1 chr7B.!!$F1 573
7 TraesCS3B01G404900 chr7B 164083573 164084142 569 False 933.0 933 96.161 1 572 1 chr7B.!!$F2 571
8 TraesCS3B01G404900 chr2B 736388170 736388740 570 False 957.0 957 96.864 1 574 1 chr2B.!!$F2 573
9 TraesCS3B01G404900 chr2B 210267140 210267704 564 False 933.0 933 96.329 1 572 1 chr2B.!!$F1 571
10 TraesCS3B01G404900 chr6B 120822102 120822670 568 True 953.0 953 96.853 1 572 1 chr6B.!!$R1 571
11 TraesCS3B01G404900 chr4B 481633848 481634422 574 True 920.0 920 95.509 1 577 1 chr4B.!!$R1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 974 0.179004 TCTGCCACACCATCGGTTTT 60.179 50.000 0.00 0.00 31.02 2.43 F
1313 1327 0.319297 CGTCGTTCCCGTTCTTCCTT 60.319 55.000 0.00 0.00 35.01 3.36 F
1314 1328 1.145803 GTCGTTCCCGTTCTTCCTTG 58.854 55.000 0.00 0.00 35.01 3.61 F
1584 1599 1.339929 GCAACCCAGTGAATTCCGTTT 59.660 47.619 2.27 0.00 0.00 3.60 F
1934 1952 1.446792 ACATGAGTTCTCCGCAGCG 60.447 57.895 8.18 8.18 0.00 5.18 F
2924 2942 2.103373 GAGTGATCAGCCACTAGGTCA 58.897 52.381 0.00 0.00 46.45 4.02 F
4379 4450 0.179032 TGCAGGCTCGACTTTTTCCA 60.179 50.000 0.00 0.00 0.00 3.53 F
4432 5034 0.107508 GAGCAGCTCACTAATGCCCA 60.108 55.000 18.17 0.00 40.89 5.36 F
4549 5151 0.319727 TGCAATTGGAAAGGCGCAAG 60.320 50.000 10.83 0.00 33.31 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 2381 1.065564 CCCTTCCCAGAGAGCTCAAAG 60.066 57.143 17.77 8.86 0.00 2.77 R
2993 3011 1.466167 GCTATGCTGGAATACATGCCG 59.534 52.381 0.00 0.00 0.00 5.69 R
3071 3089 3.808726 CACAAAGATAGCCAGAGATGAGC 59.191 47.826 0.00 0.00 0.00 4.26 R
3392 3414 2.634940 GGCAGCCTCTCTATTACATGGA 59.365 50.000 3.29 0.00 0.00 3.41 R
3895 3944 1.489649 CTCTGTCCCTACCGGTCTAGA 59.510 57.143 12.40 2.69 0.00 2.43 R
4411 4482 0.179100 GGCATTAGTGAGCTGCTCGA 60.179 55.000 23.35 10.88 36.18 4.04 R
5704 6335 0.546122 AATAGCATCCGGTTCTGCCA 59.454 50.000 18.33 9.18 39.22 4.92 R
5949 6581 2.241176 TGGATACTGGACACCCATTTCC 59.759 50.000 0.00 0.00 42.59 3.13 R
6519 7197 0.390866 CACTCCGTGCTTCAGCTGAT 60.391 55.000 19.04 0.00 42.66 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 304 1.606994 CCCGGTCTGATTCGTTCAACA 60.607 52.381 0.00 0.00 32.78 3.33
422 425 2.600470 TTTTTCTTTGGTGGCTGCTG 57.400 45.000 0.00 0.00 0.00 4.41
423 426 1.484038 TTTTCTTTGGTGGCTGCTGT 58.516 45.000 0.00 0.00 0.00 4.40
424 427 0.746063 TTTCTTTGGTGGCTGCTGTG 59.254 50.000 0.00 0.00 0.00 3.66
477 480 4.393834 TGGTGTCAAGCTTAGCAATGTTA 58.606 39.130 7.07 0.00 0.00 2.41
480 483 5.106157 GGTGTCAAGCTTAGCAATGTTATGT 60.106 40.000 7.07 0.00 0.00 2.29
511 514 8.558973 TTTCAATTTTGTCATGTTGGTCTTTT 57.441 26.923 0.00 0.00 0.00 2.27
628 631 7.712204 AGATGATCATATTTATTGCCATGCA 57.288 32.000 8.54 0.00 36.47 3.96
629 632 8.306313 AGATGATCATATTTATTGCCATGCAT 57.694 30.769 8.54 0.00 38.76 3.96
630 633 9.416284 AGATGATCATATTTATTGCCATGCATA 57.584 29.630 8.54 0.00 38.76 3.14
632 635 9.811995 ATGATCATATTTATTGCCATGCATAAC 57.188 29.630 6.36 0.00 38.76 1.89
633 636 8.804204 TGATCATATTTATTGCCATGCATAACA 58.196 29.630 0.00 0.00 38.76 2.41
634 637 8.991243 ATCATATTTATTGCCATGCATAACAC 57.009 30.769 0.00 0.00 38.76 3.32
635 638 7.949434 TCATATTTATTGCCATGCATAACACA 58.051 30.769 0.00 0.00 38.76 3.72
636 639 8.419442 TCATATTTATTGCCATGCATAACACAA 58.581 29.630 0.00 2.01 38.76 3.33
637 640 9.043079 CATATTTATTGCCATGCATAACACAAA 57.957 29.630 0.00 4.51 38.76 2.83
638 641 7.918536 ATTTATTGCCATGCATAACACAAAA 57.081 28.000 0.00 4.51 38.76 2.44
639 642 7.918536 TTTATTGCCATGCATAACACAAAAT 57.081 28.000 0.00 0.00 38.76 1.82
640 643 9.610705 ATTTATTGCCATGCATAACACAAAATA 57.389 25.926 0.00 0.00 38.76 1.40
641 644 8.645730 TTATTGCCATGCATAACACAAAATAG 57.354 30.769 0.00 0.00 38.76 1.73
642 645 5.657826 TGCCATGCATAACACAAAATAGT 57.342 34.783 0.00 0.00 31.71 2.12
643 646 6.765915 TGCCATGCATAACACAAAATAGTA 57.234 33.333 0.00 0.00 31.71 1.82
644 647 7.345422 TGCCATGCATAACACAAAATAGTAT 57.655 32.000 0.00 0.00 31.71 2.12
645 648 8.457238 TGCCATGCATAACACAAAATAGTATA 57.543 30.769 0.00 0.00 31.71 1.47
646 649 8.907885 TGCCATGCATAACACAAAATAGTATAA 58.092 29.630 0.00 0.00 31.71 0.98
647 650 9.180678 GCCATGCATAACACAAAATAGTATAAC 57.819 33.333 0.00 0.00 0.00 1.89
687 690 9.359653 TGGTATCTACTTATGTTACTCTAACCC 57.640 37.037 0.00 0.00 37.88 4.11
688 691 9.585369 GGTATCTACTTATGTTACTCTAACCCT 57.415 37.037 0.00 0.00 37.88 4.34
691 694 9.939424 ATCTACTTATGTTACTCTAACCCTCTT 57.061 33.333 0.00 0.00 37.88 2.85
692 695 9.765295 TCTACTTATGTTACTCTAACCCTCTTT 57.235 33.333 0.00 0.00 37.88 2.52
732 735 8.978265 CTACATCAGCATGTTTACTATTTTCG 57.022 34.615 0.00 0.00 40.66 3.46
733 736 7.609760 ACATCAGCATGTTTACTATTTTCGA 57.390 32.000 0.00 0.00 40.66 3.71
734 737 7.688372 ACATCAGCATGTTTACTATTTTCGAG 58.312 34.615 0.00 0.00 40.66 4.04
735 738 7.334421 ACATCAGCATGTTTACTATTTTCGAGT 59.666 33.333 0.00 0.00 40.66 4.18
736 739 7.060600 TCAGCATGTTTACTATTTTCGAGTG 57.939 36.000 0.00 0.00 37.40 3.51
737 740 5.734498 CAGCATGTTTACTATTTTCGAGTGC 59.266 40.000 0.00 0.00 0.00 4.40
738 741 5.411361 AGCATGTTTACTATTTTCGAGTGCA 59.589 36.000 0.00 0.00 0.00 4.57
739 742 6.094048 AGCATGTTTACTATTTTCGAGTGCAT 59.906 34.615 0.00 0.00 0.00 3.96
740 743 6.195244 GCATGTTTACTATTTTCGAGTGCATG 59.805 38.462 0.00 0.00 36.74 4.06
741 744 7.463544 CATGTTTACTATTTTCGAGTGCATGA 58.536 34.615 0.00 0.00 36.31 3.07
742 745 7.609760 TGTTTACTATTTTCGAGTGCATGAT 57.390 32.000 0.00 0.00 0.00 2.45
743 746 8.710835 TGTTTACTATTTTCGAGTGCATGATA 57.289 30.769 0.00 0.00 0.00 2.15
744 747 8.600625 TGTTTACTATTTTCGAGTGCATGATAC 58.399 33.333 0.00 0.00 0.00 2.24
745 748 7.709269 TTACTATTTTCGAGTGCATGATACC 57.291 36.000 0.00 0.00 0.00 2.73
746 749 4.745125 ACTATTTTCGAGTGCATGATACCG 59.255 41.667 0.00 1.43 0.00 4.02
747 750 1.934589 TTTCGAGTGCATGATACCGG 58.065 50.000 0.00 0.00 0.00 5.28
748 751 0.529773 TTCGAGTGCATGATACCGGC 60.530 55.000 0.00 0.00 0.00 6.13
749 752 1.068083 CGAGTGCATGATACCGGCT 59.932 57.895 0.00 0.00 0.00 5.52
750 753 0.313987 CGAGTGCATGATACCGGCTA 59.686 55.000 0.00 0.00 0.00 3.93
751 754 1.067565 CGAGTGCATGATACCGGCTAT 60.068 52.381 0.00 0.00 0.00 2.97
752 755 2.341257 GAGTGCATGATACCGGCTATG 58.659 52.381 0.00 2.12 0.00 2.23
753 756 1.970640 AGTGCATGATACCGGCTATGA 59.029 47.619 0.00 0.00 0.00 2.15
754 757 2.568956 AGTGCATGATACCGGCTATGAT 59.431 45.455 0.00 0.00 0.00 2.45
755 758 2.674852 GTGCATGATACCGGCTATGATG 59.325 50.000 0.00 9.92 31.40 3.07
756 759 1.667724 GCATGATACCGGCTATGATGC 59.332 52.381 22.22 22.22 42.82 3.91
757 760 3.573309 GCATGATACCGGCTATGATGCC 61.573 54.545 24.24 14.05 43.23 4.40
767 770 2.430465 GCTATGATGCCACCACTATGG 58.570 52.381 0.00 0.00 45.02 2.74
777 780 3.483954 CCACTATGGTCAGCCTTGG 57.516 57.895 0.00 0.00 35.27 3.61
778 781 0.911769 CCACTATGGTCAGCCTTGGA 59.088 55.000 0.00 0.00 35.27 3.53
779 782 1.281867 CCACTATGGTCAGCCTTGGAA 59.718 52.381 0.00 0.00 35.27 3.53
780 783 2.290896 CCACTATGGTCAGCCTTGGAAA 60.291 50.000 0.00 0.00 35.27 3.13
781 784 3.012518 CACTATGGTCAGCCTTGGAAAG 58.987 50.000 0.00 0.00 45.69 2.62
800 803 1.956170 GTGTGTGTGTGCTCGGGAG 60.956 63.158 0.00 0.00 0.00 4.30
822 827 8.353684 GGGAGCTCTAAAAGAATTTATTAAGGC 58.646 37.037 14.64 0.00 37.28 4.35
823 828 8.903820 GGAGCTCTAAAAGAATTTATTAAGGCA 58.096 33.333 14.64 0.00 37.28 4.75
838 843 9.847224 TTTATTAAGGCAGATCTTTTACCTAGG 57.153 33.333 7.41 7.41 0.00 3.02
855 860 2.329614 GGCGGGCATACGTGTTGTT 61.330 57.895 0.00 0.00 35.98 2.83
857 862 0.453782 GCGGGCATACGTGTTGTTTC 60.454 55.000 0.00 0.00 35.98 2.78
867 872 1.260297 CGTGTTGTTTCGCTGATGACA 59.740 47.619 0.00 0.00 0.00 3.58
933 938 5.060816 CGAAACGAGCAAACGTAATACCTTA 59.939 40.000 4.30 0.00 45.83 2.69
936 941 4.082026 ACGAGCAAACGTAATACCTTAGGT 60.082 41.667 9.57 9.57 44.72 3.08
961 974 0.179004 TCTGCCACACCATCGGTTTT 60.179 50.000 0.00 0.00 31.02 2.43
963 976 1.288752 GCCACACCATCGGTTTTGG 59.711 57.895 6.29 6.29 38.61 3.28
965 978 1.898902 CCACACCATCGGTTTTGGTA 58.101 50.000 0.00 0.00 45.71 3.25
966 979 1.538075 CCACACCATCGGTTTTGGTAC 59.462 52.381 0.00 0.00 45.71 3.34
967 980 2.500229 CACACCATCGGTTTTGGTACT 58.500 47.619 0.00 0.00 45.71 2.73
968 981 2.225491 CACACCATCGGTTTTGGTACTG 59.775 50.000 0.00 0.00 45.71 2.74
969 982 1.810151 CACCATCGGTTTTGGTACTGG 59.190 52.381 0.00 0.00 45.71 4.00
991 1004 4.022676 GGTAGCGGAAAGAGATAGGAAGAG 60.023 50.000 0.00 0.00 0.00 2.85
1313 1327 0.319297 CGTCGTTCCCGTTCTTCCTT 60.319 55.000 0.00 0.00 35.01 3.36
1314 1328 1.145803 GTCGTTCCCGTTCTTCCTTG 58.854 55.000 0.00 0.00 35.01 3.61
1366 1381 2.810439 TCTTTGGCGATTGGTTTTGG 57.190 45.000 0.00 0.00 0.00 3.28
1410 1425 5.536916 CCAGTGATTTGTTAAACCCCACTTA 59.463 40.000 0.00 0.00 31.16 2.24
1413 1428 5.302313 GTGATTTGTTAAACCCCACTTACCA 59.698 40.000 0.00 0.00 0.00 3.25
1478 1493 4.452455 GCGCTAATCACTGCCTATTATTGT 59.548 41.667 0.00 0.00 0.00 2.71
1508 1523 2.929043 AGGGAAGGAAGGTGATTGGATT 59.071 45.455 0.00 0.00 0.00 3.01
1584 1599 1.339929 GCAACCCAGTGAATTCCGTTT 59.660 47.619 2.27 0.00 0.00 3.60
1585 1600 2.862140 GCAACCCAGTGAATTCCGTTTG 60.862 50.000 2.27 0.00 0.00 2.93
1586 1601 2.621055 CAACCCAGTGAATTCCGTTTGA 59.379 45.455 2.27 0.00 0.00 2.69
1587 1602 2.504367 ACCCAGTGAATTCCGTTTGAG 58.496 47.619 2.27 0.00 0.00 3.02
1588 1603 2.158667 ACCCAGTGAATTCCGTTTGAGT 60.159 45.455 2.27 0.00 0.00 3.41
1589 1604 3.071892 ACCCAGTGAATTCCGTTTGAGTA 59.928 43.478 2.27 0.00 0.00 2.59
1590 1605 3.435671 CCCAGTGAATTCCGTTTGAGTAC 59.564 47.826 2.27 0.00 0.00 2.73
1591 1606 4.315803 CCAGTGAATTCCGTTTGAGTACT 58.684 43.478 2.27 0.00 0.00 2.73
1592 1607 5.475719 CCAGTGAATTCCGTTTGAGTACTA 58.524 41.667 2.27 0.00 0.00 1.82
1593 1608 6.106673 CCAGTGAATTCCGTTTGAGTACTAT 58.893 40.000 2.27 0.00 0.00 2.12
1594 1609 7.262772 CCAGTGAATTCCGTTTGAGTACTATA 58.737 38.462 2.27 0.00 0.00 1.31
1595 1610 7.222224 CCAGTGAATTCCGTTTGAGTACTATAC 59.778 40.741 2.27 0.00 0.00 1.47
1596 1611 7.758076 CAGTGAATTCCGTTTGAGTACTATACA 59.242 37.037 2.27 0.00 0.00 2.29
1934 1952 1.446792 ACATGAGTTCTCCGCAGCG 60.447 57.895 8.18 8.18 0.00 5.18
1994 2012 3.013921 CCGGTGCCTGTATTACAACATT 58.986 45.455 0.00 0.00 0.00 2.71
2138 2156 6.625532 AAATCCCTTTATTTGAGGCATGTT 57.374 33.333 0.00 0.00 32.74 2.71
2312 2330 4.955811 TGGCGTGGATAAGATCATACTT 57.044 40.909 0.00 0.00 0.00 2.24
2363 2381 5.392811 CCTGAATGCTTTGAACCTTGATCTC 60.393 44.000 0.00 0.00 0.00 2.75
2669 2687 3.048600 AGATGGGCTACTGCAAGGATTA 58.951 45.455 0.00 0.00 41.91 1.75
2924 2942 2.103373 GAGTGATCAGCCACTAGGTCA 58.897 52.381 0.00 0.00 46.45 4.02
3090 3108 3.044156 TGGCTCATCTCTGGCTATCTTT 58.956 45.455 0.00 0.00 0.00 2.52
3216 3234 2.999507 GAGTCAGTCACATGAGTCGT 57.000 50.000 0.00 0.00 39.26 4.34
3218 3236 4.421033 GAGTCAGTCACATGAGTCGTAA 57.579 45.455 0.00 0.00 39.26 3.18
3321 3341 4.908790 GCTCCTGCTGAGAGTGAC 57.091 61.111 7.85 0.00 44.42 3.67
3353 3373 4.949238 AGCTGTTGGCATATGTTGTTATGA 59.051 37.500 4.29 0.00 44.79 2.15
3392 3414 7.882791 TGTAGTCATCAATGGTTACTTGAACAT 59.117 33.333 0.00 0.00 40.09 2.71
3397 3419 6.513806 TCAATGGTTACTTGAACATCCATG 57.486 37.500 0.00 0.00 40.09 3.66
3559 3581 5.627182 ACACATGCTTCCAGAGAATAGAT 57.373 39.130 0.00 0.00 0.00 1.98
3794 3843 4.683832 ACAGCTATAAAGTTCAGTAGGCG 58.316 43.478 0.00 0.00 0.00 5.52
3994 4043 2.987547 TCGGGAGGGACGTGACAC 60.988 66.667 0.00 0.00 0.00 3.67
4011 4060 4.078537 TGACACACAATCAGGTTTATGGG 58.921 43.478 0.00 0.00 0.00 4.00
4080 4129 8.982685 CAGTTTACCATATGCTAAGATGTACAG 58.017 37.037 0.33 0.00 0.00 2.74
4125 4174 6.082984 GCTTTAGAGCTTGTGTTCTGATTTC 58.917 40.000 0.00 0.00 45.65 2.17
4171 4220 0.250513 CTGGTTGCTCACCCTACCTC 59.749 60.000 3.46 0.00 46.68 3.85
4265 4314 6.135290 TGAAACTCAGTCCAGAAAATTGTG 57.865 37.500 0.00 0.00 0.00 3.33
4293 4342 1.086696 CCATGGATTTCAAGTCGCGT 58.913 50.000 5.56 0.00 0.00 6.01
4364 4435 2.353807 CGACTAGTCGCAACTGCAG 58.646 57.895 30.44 13.48 46.50 4.41
4369 4440 2.819117 TAGTCGCAACTGCAGGCTCG 62.819 60.000 19.93 16.84 42.21 5.03
4379 4450 0.179032 TGCAGGCTCGACTTTTTCCA 60.179 50.000 0.00 0.00 0.00 3.53
4391 4462 2.105993 ACTTTTTCCAAGTCGCTACCCT 59.894 45.455 0.00 0.00 0.00 4.34
4402 4473 0.304098 CGCTACCCTAGAACGACTCG 59.696 60.000 0.00 0.00 0.00 4.18
4428 5030 3.051327 CTCATCGAGCAGCTCACTAATG 58.949 50.000 22.49 17.41 0.00 1.90
4429 5031 1.526041 CATCGAGCAGCTCACTAATGC 59.474 52.381 22.49 0.00 40.29 3.56
4430 5032 0.179100 TCGAGCAGCTCACTAATGCC 60.179 55.000 22.49 0.00 40.89 4.40
4431 5033 1.156645 CGAGCAGCTCACTAATGCCC 61.157 60.000 22.49 0.00 40.89 5.36
4432 5034 0.107508 GAGCAGCTCACTAATGCCCA 60.108 55.000 18.17 0.00 40.89 5.36
4433 5035 0.393537 AGCAGCTCACTAATGCCCAC 60.394 55.000 0.00 0.00 40.89 4.61
4434 5036 0.393537 GCAGCTCACTAATGCCCACT 60.394 55.000 0.00 0.00 33.81 4.00
4435 5037 1.134401 GCAGCTCACTAATGCCCACTA 60.134 52.381 0.00 0.00 33.81 2.74
4470 5072 3.183775 CCACTTGTCAGTAAAGCACGTAC 59.816 47.826 0.00 0.00 0.00 3.67
4471 5073 4.049186 CACTTGTCAGTAAAGCACGTACT 58.951 43.478 0.00 0.00 31.85 2.73
4472 5074 4.148348 CACTTGTCAGTAAAGCACGTACTC 59.852 45.833 0.00 0.00 29.12 2.59
4473 5075 3.293311 TGTCAGTAAAGCACGTACTCC 57.707 47.619 0.00 0.00 29.12 3.85
4474 5076 2.029649 TGTCAGTAAAGCACGTACTCCC 60.030 50.000 0.00 0.00 29.12 4.30
4475 5077 2.230750 GTCAGTAAAGCACGTACTCCCT 59.769 50.000 0.00 0.00 29.12 4.20
4476 5078 2.490903 TCAGTAAAGCACGTACTCCCTC 59.509 50.000 0.00 0.00 29.12 4.30
4477 5079 1.823610 AGTAAAGCACGTACTCCCTCC 59.176 52.381 0.00 0.00 0.00 4.30
4478 5080 0.813184 TAAAGCACGTACTCCCTCCG 59.187 55.000 0.00 0.00 0.00 4.63
4479 5081 1.183676 AAAGCACGTACTCCCTCCGT 61.184 55.000 0.00 0.00 34.71 4.69
4480 5082 1.593296 AAGCACGTACTCCCTCCGTC 61.593 60.000 0.00 0.00 31.46 4.79
4481 5083 2.045131 GCACGTACTCCCTCCGTCT 61.045 63.158 0.00 0.00 31.46 4.18
4482 5084 1.801332 CACGTACTCCCTCCGTCTG 59.199 63.158 0.00 0.00 31.46 3.51
4483 5085 1.378250 ACGTACTCCCTCCGTCTGG 60.378 63.158 0.00 0.00 0.00 3.86
4484 5086 1.378250 CGTACTCCCTCCGTCTGGT 60.378 63.158 0.00 0.00 36.30 4.00
4485 5087 1.654954 CGTACTCCCTCCGTCTGGTG 61.655 65.000 0.00 0.00 36.30 4.17
4486 5088 0.323178 GTACTCCCTCCGTCTGGTGA 60.323 60.000 0.00 0.00 36.30 4.02
4487 5089 0.406750 TACTCCCTCCGTCTGGTGAA 59.593 55.000 0.00 0.00 36.30 3.18
4488 5090 0.471211 ACTCCCTCCGTCTGGTGAAA 60.471 55.000 0.00 0.00 36.30 2.69
4489 5091 0.685097 CTCCCTCCGTCTGGTGAAAA 59.315 55.000 0.00 0.00 36.30 2.29
4490 5092 0.685097 TCCCTCCGTCTGGTGAAAAG 59.315 55.000 0.00 0.00 36.30 2.27
4491 5093 0.396811 CCCTCCGTCTGGTGAAAAGT 59.603 55.000 0.00 0.00 36.30 2.66
4492 5094 1.608283 CCCTCCGTCTGGTGAAAAGTC 60.608 57.143 0.00 0.00 36.30 3.01
4493 5095 1.608283 CCTCCGTCTGGTGAAAAGTCC 60.608 57.143 0.00 0.00 36.30 3.85
4494 5096 1.070134 CTCCGTCTGGTGAAAAGTCCA 59.930 52.381 0.00 0.00 36.30 4.02
4495 5097 1.202604 TCCGTCTGGTGAAAAGTCCAC 60.203 52.381 0.00 0.00 36.30 4.02
4496 5098 1.474320 CCGTCTGGTGAAAAGTCCACA 60.474 52.381 0.00 0.00 36.31 4.17
4497 5099 2.494059 CGTCTGGTGAAAAGTCCACAT 58.506 47.619 0.00 0.00 36.31 3.21
4498 5100 3.556213 CCGTCTGGTGAAAAGTCCACATA 60.556 47.826 0.00 0.00 36.31 2.29
4499 5101 3.679980 CGTCTGGTGAAAAGTCCACATAG 59.320 47.826 0.00 0.00 36.31 2.23
4500 5102 4.560716 CGTCTGGTGAAAAGTCCACATAGA 60.561 45.833 0.00 0.00 36.31 1.98
4501 5103 4.932200 GTCTGGTGAAAAGTCCACATAGAG 59.068 45.833 0.00 0.00 36.31 2.43
4502 5104 4.838423 TCTGGTGAAAAGTCCACATAGAGA 59.162 41.667 0.00 0.00 36.31 3.10
4503 5105 5.306937 TCTGGTGAAAAGTCCACATAGAGAA 59.693 40.000 0.00 0.00 36.31 2.87
4504 5106 5.935945 TGGTGAAAAGTCCACATAGAGAAA 58.064 37.500 0.00 0.00 36.31 2.52
4505 5107 6.542821 TGGTGAAAAGTCCACATAGAGAAAT 58.457 36.000 0.00 0.00 36.31 2.17
4506 5108 7.004086 TGGTGAAAAGTCCACATAGAGAAATT 58.996 34.615 0.00 0.00 36.31 1.82
4507 5109 7.505585 TGGTGAAAAGTCCACATAGAGAAATTT 59.494 33.333 0.00 0.00 36.31 1.82
4508 5110 8.360390 GGTGAAAAGTCCACATAGAGAAATTTT 58.640 33.333 0.00 0.00 36.31 1.82
4512 5114 9.807921 AAAAGTCCACATAGAGAAATTTTAGGA 57.192 29.630 0.00 0.00 0.00 2.94
4513 5115 8.794335 AAGTCCACATAGAGAAATTTTAGGAC 57.206 34.615 0.00 0.00 41.49 3.85
4514 5116 7.918076 AGTCCACATAGAGAAATTTTAGGACA 58.082 34.615 0.00 0.00 43.11 4.02
4515 5117 8.383175 AGTCCACATAGAGAAATTTTAGGACAA 58.617 33.333 0.00 0.00 43.11 3.18
4516 5118 9.010029 GTCCACATAGAGAAATTTTAGGACAAA 57.990 33.333 0.00 0.00 40.99 2.83
4517 5119 9.753674 TCCACATAGAGAAATTTTAGGACAAAT 57.246 29.630 0.00 0.00 0.00 2.32
4546 5148 1.441738 AAATGCAATTGGAAAGGCGC 58.558 45.000 2.94 0.00 36.10 6.53
4547 5149 0.321021 AATGCAATTGGAAAGGCGCA 59.679 45.000 10.83 0.00 33.44 6.09
4548 5150 0.321021 ATGCAATTGGAAAGGCGCAA 59.679 45.000 10.83 0.00 32.97 4.85
4549 5151 0.319727 TGCAATTGGAAAGGCGCAAG 60.320 50.000 10.83 0.00 33.31 4.01
4561 5163 3.805267 CGCAAGCCACCATCTCTC 58.195 61.111 0.00 0.00 0.00 3.20
4562 5164 1.220206 CGCAAGCCACCATCTCTCT 59.780 57.895 0.00 0.00 0.00 3.10
4563 5165 0.809241 CGCAAGCCACCATCTCTCTC 60.809 60.000 0.00 0.00 0.00 3.20
4564 5166 0.463474 GCAAGCCACCATCTCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
4565 5167 1.202330 CAAGCCACCATCTCTCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
4566 5168 1.138661 CAAGCCACCATCTCTCTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
4567 5169 0.636101 AGCCACCATCTCTCTCCTCT 59.364 55.000 0.00 0.00 0.00 3.69
4568 5170 1.008206 AGCCACCATCTCTCTCCTCTT 59.992 52.381 0.00 0.00 0.00 2.85
4569 5171 1.836802 GCCACCATCTCTCTCCTCTTT 59.163 52.381 0.00 0.00 0.00 2.52
4570 5172 3.034635 GCCACCATCTCTCTCCTCTTTA 58.965 50.000 0.00 0.00 0.00 1.85
4571 5173 3.452627 GCCACCATCTCTCTCCTCTTTAA 59.547 47.826 0.00 0.00 0.00 1.52
4572 5174 4.102367 GCCACCATCTCTCTCCTCTTTAAT 59.898 45.833 0.00 0.00 0.00 1.40
4573 5175 5.397334 GCCACCATCTCTCTCCTCTTTAATT 60.397 44.000 0.00 0.00 0.00 1.40
4574 5176 6.183361 GCCACCATCTCTCTCCTCTTTAATTA 60.183 42.308 0.00 0.00 0.00 1.40
4575 5177 7.213678 CCACCATCTCTCTCCTCTTTAATTAC 58.786 42.308 0.00 0.00 0.00 1.89
4576 5178 7.213678 CACCATCTCTCTCCTCTTTAATTACC 58.786 42.308 0.00 0.00 0.00 2.85
4577 5179 6.327887 ACCATCTCTCTCCTCTTTAATTACCC 59.672 42.308 0.00 0.00 0.00 3.69
4578 5180 6.327626 CCATCTCTCTCCTCTTTAATTACCCA 59.672 42.308 0.00 0.00 0.00 4.51
4579 5181 7.147479 CCATCTCTCTCCTCTTTAATTACCCAA 60.147 40.741 0.00 0.00 0.00 4.12
4580 5182 7.184067 TCTCTCTCCTCTTTAATTACCCAAC 57.816 40.000 0.00 0.00 0.00 3.77
4581 5183 6.156429 TCTCTCTCCTCTTTAATTACCCAACC 59.844 42.308 0.00 0.00 0.00 3.77
4582 5184 5.191124 TCTCTCCTCTTTAATTACCCAACCC 59.809 44.000 0.00 0.00 0.00 4.11
4583 5185 4.228895 TCTCCTCTTTAATTACCCAACCCC 59.771 45.833 0.00 0.00 0.00 4.95
4584 5186 3.924072 TCCTCTTTAATTACCCAACCCCA 59.076 43.478 0.00 0.00 0.00 4.96
4585 5187 4.357399 TCCTCTTTAATTACCCAACCCCAA 59.643 41.667 0.00 0.00 0.00 4.12
4586 5188 5.016890 TCCTCTTTAATTACCCAACCCCAAT 59.983 40.000 0.00 0.00 0.00 3.16
4587 5189 5.128663 CCTCTTTAATTACCCAACCCCAATG 59.871 44.000 0.00 0.00 0.00 2.82
4588 5190 5.905088 TCTTTAATTACCCAACCCCAATGA 58.095 37.500 0.00 0.00 0.00 2.57
4589 5191 5.955355 TCTTTAATTACCCAACCCCAATGAG 59.045 40.000 0.00 0.00 0.00 2.90
4590 5192 2.159179 ATTACCCAACCCCAATGAGC 57.841 50.000 0.00 0.00 0.00 4.26
4591 5193 1.080638 TTACCCAACCCCAATGAGCT 58.919 50.000 0.00 0.00 0.00 4.09
4592 5194 1.974028 TACCCAACCCCAATGAGCTA 58.026 50.000 0.00 0.00 0.00 3.32
4593 5195 1.080638 ACCCAACCCCAATGAGCTAA 58.919 50.000 0.00 0.00 0.00 3.09
4594 5196 1.005924 ACCCAACCCCAATGAGCTAAG 59.994 52.381 0.00 0.00 0.00 2.18
4595 5197 1.005924 CCCAACCCCAATGAGCTAAGT 59.994 52.381 0.00 0.00 0.00 2.24
4596 5198 2.094675 CCAACCCCAATGAGCTAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
4597 5199 1.474077 CAACCCCAATGAGCTAAGTGC 59.526 52.381 0.00 0.00 43.29 4.40
4598 5200 0.698238 ACCCCAATGAGCTAAGTGCA 59.302 50.000 0.00 0.00 45.94 4.57
4599 5201 1.285962 ACCCCAATGAGCTAAGTGCAT 59.714 47.619 0.00 0.00 45.94 3.96
4600 5202 1.679680 CCCCAATGAGCTAAGTGCATG 59.320 52.381 0.00 0.00 45.94 4.06
4601 5203 2.372264 CCCAATGAGCTAAGTGCATGT 58.628 47.619 0.00 0.00 45.94 3.21
4602 5204 3.544684 CCCAATGAGCTAAGTGCATGTA 58.455 45.455 0.00 0.00 45.94 2.29
4603 5205 3.562973 CCCAATGAGCTAAGTGCATGTAG 59.437 47.826 0.00 0.00 45.94 2.74
4604 5206 4.445453 CCAATGAGCTAAGTGCATGTAGA 58.555 43.478 10.04 0.00 45.94 2.59
4605 5207 4.877823 CCAATGAGCTAAGTGCATGTAGAA 59.122 41.667 10.04 0.00 45.94 2.10
4606 5208 5.355071 CCAATGAGCTAAGTGCATGTAGAAA 59.645 40.000 10.04 0.00 45.94 2.52
4607 5209 6.039047 CCAATGAGCTAAGTGCATGTAGAAAT 59.961 38.462 10.04 0.00 45.94 2.17
4608 5210 7.415989 CCAATGAGCTAAGTGCATGTAGAAATT 60.416 37.037 10.04 4.39 45.94 1.82
4609 5211 8.615211 CAATGAGCTAAGTGCATGTAGAAATTA 58.385 33.333 10.04 0.00 45.94 1.40
4610 5212 8.737168 ATGAGCTAAGTGCATGTAGAAATTAA 57.263 30.769 10.04 0.00 45.94 1.40
4611 5213 8.201554 TGAGCTAAGTGCATGTAGAAATTAAG 57.798 34.615 10.04 0.00 45.94 1.85
4612 5214 7.280876 TGAGCTAAGTGCATGTAGAAATTAAGG 59.719 37.037 10.04 0.00 45.94 2.69
4613 5215 7.338710 AGCTAAGTGCATGTAGAAATTAAGGA 58.661 34.615 10.04 0.00 45.94 3.36
4614 5216 7.497249 AGCTAAGTGCATGTAGAAATTAAGGAG 59.503 37.037 10.04 0.00 45.94 3.69
4615 5217 7.495934 GCTAAGTGCATGTAGAAATTAAGGAGA 59.504 37.037 10.04 0.00 42.31 3.71
4616 5218 7.617041 AAGTGCATGTAGAAATTAAGGAGAC 57.383 36.000 0.00 0.00 0.00 3.36
4617 5219 6.116126 AGTGCATGTAGAAATTAAGGAGACC 58.884 40.000 0.00 0.00 0.00 3.85
4618 5220 5.880332 GTGCATGTAGAAATTAAGGAGACCA 59.120 40.000 0.00 0.00 0.00 4.02
4619 5221 6.543831 GTGCATGTAGAAATTAAGGAGACCAT 59.456 38.462 0.00 0.00 0.00 3.55
4620 5222 6.543465 TGCATGTAGAAATTAAGGAGACCATG 59.457 38.462 0.00 0.00 0.00 3.66
4621 5223 6.543831 GCATGTAGAAATTAAGGAGACCATGT 59.456 38.462 0.00 0.00 0.00 3.21
4622 5224 7.467811 GCATGTAGAAATTAAGGAGACCATGTG 60.468 40.741 0.00 0.00 0.00 3.21
4623 5225 7.016153 TGTAGAAATTAAGGAGACCATGTGT 57.984 36.000 0.00 0.00 0.00 3.72
4624 5226 8.141298 TGTAGAAATTAAGGAGACCATGTGTA 57.859 34.615 0.00 0.00 0.00 2.90
4625 5227 8.258007 TGTAGAAATTAAGGAGACCATGTGTAG 58.742 37.037 0.00 0.00 0.00 2.74
4626 5228 7.496346 AGAAATTAAGGAGACCATGTGTAGA 57.504 36.000 0.00 0.00 0.00 2.59
4627 5229 7.918076 AGAAATTAAGGAGACCATGTGTAGAA 58.082 34.615 0.00 0.00 0.00 2.10
4628 5230 8.552296 AGAAATTAAGGAGACCATGTGTAGAAT 58.448 33.333 0.00 0.00 0.00 2.40
4629 5231 8.511604 AAATTAAGGAGACCATGTGTAGAATG 57.488 34.615 0.00 0.00 0.00 2.67
4630 5232 6.620877 TTAAGGAGACCATGTGTAGAATGT 57.379 37.500 0.00 0.00 0.00 2.71
4631 5233 5.505181 AAGGAGACCATGTGTAGAATGTT 57.495 39.130 0.00 0.00 0.00 2.71
4632 5234 6.620877 AAGGAGACCATGTGTAGAATGTTA 57.379 37.500 0.00 0.00 0.00 2.41
4633 5235 6.814954 AGGAGACCATGTGTAGAATGTTAT 57.185 37.500 0.00 0.00 0.00 1.89
4634 5236 7.200434 AGGAGACCATGTGTAGAATGTTATT 57.800 36.000 0.00 0.00 0.00 1.40
4635 5237 7.050377 AGGAGACCATGTGTAGAATGTTATTG 58.950 38.462 0.00 0.00 0.00 1.90
4636 5238 6.260936 GGAGACCATGTGTAGAATGTTATTGG 59.739 42.308 0.00 0.00 0.00 3.16
4637 5239 6.721318 AGACCATGTGTAGAATGTTATTGGT 58.279 36.000 0.00 0.00 0.00 3.67
4638 5240 6.823689 AGACCATGTGTAGAATGTTATTGGTC 59.176 38.462 9.64 9.64 40.63 4.02
4639 5241 6.721318 ACCATGTGTAGAATGTTATTGGTCT 58.279 36.000 0.00 0.00 0.00 3.85
4640 5242 7.175104 ACCATGTGTAGAATGTTATTGGTCTT 58.825 34.615 0.00 0.00 0.00 3.01
4641 5243 7.121168 ACCATGTGTAGAATGTTATTGGTCTTG 59.879 37.037 0.00 0.00 0.00 3.02
4642 5244 7.336679 CCATGTGTAGAATGTTATTGGTCTTGA 59.663 37.037 0.00 0.00 0.00 3.02
4643 5245 8.896744 CATGTGTAGAATGTTATTGGTCTTGAT 58.103 33.333 0.00 0.00 0.00 2.57
4644 5246 8.862325 TGTGTAGAATGTTATTGGTCTTGATT 57.138 30.769 0.00 0.00 0.00 2.57
4645 5247 9.952030 TGTGTAGAATGTTATTGGTCTTGATTA 57.048 29.630 0.00 0.00 0.00 1.75
4647 5249 9.391006 TGTAGAATGTTATTGGTCTTGATTACC 57.609 33.333 0.00 0.00 37.53 2.85
4648 5250 9.614792 GTAGAATGTTATTGGTCTTGATTACCT 57.385 33.333 0.00 0.00 37.91 3.08
4650 5252 8.960591 AGAATGTTATTGGTCTTGATTACCTTG 58.039 33.333 0.00 0.00 37.91 3.61
4651 5253 8.650143 AATGTTATTGGTCTTGATTACCTTGT 57.350 30.769 0.00 0.00 37.91 3.16
4652 5254 7.447374 TGTTATTGGTCTTGATTACCTTGTG 57.553 36.000 0.00 0.00 37.91 3.33
4653 5255 7.227873 TGTTATTGGTCTTGATTACCTTGTGA 58.772 34.615 0.00 0.00 37.91 3.58
4654 5256 7.888021 TGTTATTGGTCTTGATTACCTTGTGAT 59.112 33.333 0.00 0.00 37.91 3.06
4655 5257 6.764308 ATTGGTCTTGATTACCTTGTGATG 57.236 37.500 0.00 0.00 37.91 3.07
4656 5258 5.497464 TGGTCTTGATTACCTTGTGATGA 57.503 39.130 0.00 0.00 37.91 2.92
4657 5259 5.491070 TGGTCTTGATTACCTTGTGATGAG 58.509 41.667 0.00 0.00 37.91 2.90
4658 5260 5.248248 TGGTCTTGATTACCTTGTGATGAGA 59.752 40.000 0.00 0.00 37.91 3.27
4659 5261 5.814705 GGTCTTGATTACCTTGTGATGAGAG 59.185 44.000 0.00 0.00 33.97 3.20
4660 5262 6.351371 GGTCTTGATTACCTTGTGATGAGAGA 60.351 42.308 0.00 0.00 33.97 3.10
4661 5263 6.756074 GTCTTGATTACCTTGTGATGAGAGAG 59.244 42.308 0.00 0.00 0.00 3.20
4662 5264 6.665248 TCTTGATTACCTTGTGATGAGAGAGA 59.335 38.462 0.00 0.00 0.00 3.10
4663 5265 6.857437 TGATTACCTTGTGATGAGAGAGAA 57.143 37.500 0.00 0.00 0.00 2.87
4664 5266 7.244886 TGATTACCTTGTGATGAGAGAGAAA 57.755 36.000 0.00 0.00 0.00 2.52
4665 5267 7.099764 TGATTACCTTGTGATGAGAGAGAAAC 58.900 38.462 0.00 0.00 0.00 2.78
4666 5268 4.963318 ACCTTGTGATGAGAGAGAAACA 57.037 40.909 0.00 0.00 0.00 2.83
4667 5269 5.495926 ACCTTGTGATGAGAGAGAAACAT 57.504 39.130 0.00 0.00 0.00 2.71
4668 5270 5.874093 ACCTTGTGATGAGAGAGAAACATT 58.126 37.500 0.00 0.00 0.00 2.71
4669 5271 6.302269 ACCTTGTGATGAGAGAGAAACATTT 58.698 36.000 0.00 0.00 0.00 2.32
4670 5272 6.774656 ACCTTGTGATGAGAGAGAAACATTTT 59.225 34.615 0.00 0.00 0.00 1.82
4671 5273 7.286316 ACCTTGTGATGAGAGAGAAACATTTTT 59.714 33.333 0.00 0.00 0.00 1.94
4697 5299 9.787435 TTTCTACTTTAAAGTGCATTAGGAAGA 57.213 29.630 27.40 16.66 40.07 2.87
4698 5300 9.959721 TTCTACTTTAAAGTGCATTAGGAAGAT 57.040 29.630 27.40 1.31 40.07 2.40
4702 5304 9.959721 ACTTTAAAGTGCATTAGGAAGATAGAA 57.040 29.630 19.94 0.00 37.98 2.10
4704 5306 9.959721 TTTAAAGTGCATTAGGAAGATAGAAGT 57.040 29.630 0.00 0.00 0.00 3.01
4706 5308 8.950208 AAAGTGCATTAGGAAGATAGAAGTAC 57.050 34.615 0.00 0.00 0.00 2.73
4707 5309 7.661536 AGTGCATTAGGAAGATAGAAGTACA 57.338 36.000 0.00 0.00 0.00 2.90
4708 5310 7.493367 AGTGCATTAGGAAGATAGAAGTACAC 58.507 38.462 0.00 0.00 0.00 2.90
4709 5311 7.343316 AGTGCATTAGGAAGATAGAAGTACACT 59.657 37.037 0.00 0.00 0.00 3.55
4710 5312 7.650104 GTGCATTAGGAAGATAGAAGTACACTC 59.350 40.741 0.00 0.00 0.00 3.51
4711 5313 7.561722 TGCATTAGGAAGATAGAAGTACACTCT 59.438 37.037 0.00 0.00 0.00 3.24
4712 5314 8.417884 GCATTAGGAAGATAGAAGTACACTCTT 58.582 37.037 3.13 0.20 0.00 2.85
4716 5318 8.196378 AGGAAGATAGAAGTACACTCTTTTGT 57.804 34.615 3.13 0.00 0.00 2.83
4717 5319 8.091449 AGGAAGATAGAAGTACACTCTTTTGTG 58.909 37.037 3.13 0.00 43.07 3.33
4718 5320 7.332182 GGAAGATAGAAGTACACTCTTTTGTGG 59.668 40.741 3.13 0.00 41.84 4.17
4719 5321 7.540474 AGATAGAAGTACACTCTTTTGTGGA 57.460 36.000 3.13 0.00 41.84 4.02
4731 5333 9.150348 ACACTCTTTTGTGGACAAATTTTAAAG 57.850 29.630 5.80 0.41 44.30 1.85
4732 5334 8.116136 CACTCTTTTGTGGACAAATTTTAAAGC 58.884 33.333 5.80 0.00 44.30 3.51
4733 5335 7.279981 ACTCTTTTGTGGACAAATTTTAAAGCC 59.720 33.333 5.80 0.00 44.30 4.35
4734 5336 7.106239 TCTTTTGTGGACAAATTTTAAAGCCA 58.894 30.769 5.80 0.00 44.30 4.75
4735 5337 7.607991 TCTTTTGTGGACAAATTTTAAAGCCAA 59.392 29.630 5.80 0.00 44.30 4.52
4736 5338 7.687941 TTTGTGGACAAATTTTAAAGCCAAA 57.312 28.000 0.70 0.00 40.55 3.28
4737 5339 7.872113 TTGTGGACAAATTTTAAAGCCAAAT 57.128 28.000 0.00 0.00 32.11 2.32
4738 5340 7.256756 TGTGGACAAATTTTAAAGCCAAATG 57.743 32.000 0.00 0.00 0.00 2.32
4739 5341 6.825721 TGTGGACAAATTTTAAAGCCAAATGT 59.174 30.769 0.00 0.00 0.00 2.71
4740 5342 7.987458 TGTGGACAAATTTTAAAGCCAAATGTA 59.013 29.630 0.00 0.00 0.00 2.29
4741 5343 8.279800 GTGGACAAATTTTAAAGCCAAATGTAC 58.720 33.333 0.00 0.00 0.00 2.90
4742 5344 7.987458 TGGACAAATTTTAAAGCCAAATGTACA 59.013 29.630 0.00 0.00 0.00 2.90
4743 5345 8.495148 GGACAAATTTTAAAGCCAAATGTACAG 58.505 33.333 0.33 0.00 0.00 2.74
4744 5346 8.956533 ACAAATTTTAAAGCCAAATGTACAGT 57.043 26.923 0.33 0.00 0.00 3.55
4745 5347 9.389755 ACAAATTTTAAAGCCAAATGTACAGTT 57.610 25.926 2.02 2.02 0.00 3.16
4746 5348 9.862585 CAAATTTTAAAGCCAAATGTACAGTTC 57.137 29.630 5.41 0.00 0.00 3.01
4747 5349 9.606631 AAATTTTAAAGCCAAATGTACAGTTCA 57.393 25.926 5.41 0.00 0.00 3.18
4748 5350 7.995463 TTTTAAAGCCAAATGTACAGTTCAC 57.005 32.000 5.41 1.20 0.00 3.18
4749 5351 4.584327 AAAGCCAAATGTACAGTTCACC 57.416 40.909 5.41 0.00 0.00 4.02
4750 5352 2.151202 AGCCAAATGTACAGTTCACCG 58.849 47.619 5.41 0.00 0.00 4.94
4751 5353 1.199097 GCCAAATGTACAGTTCACCGG 59.801 52.381 5.41 0.00 0.00 5.28
4752 5354 2.773487 CCAAATGTACAGTTCACCGGA 58.227 47.619 9.46 0.00 0.00 5.14
4753 5355 3.343617 CCAAATGTACAGTTCACCGGAT 58.656 45.455 9.46 0.00 0.00 4.18
4754 5356 3.126858 CCAAATGTACAGTTCACCGGATG 59.873 47.826 9.46 2.48 0.00 3.51
4755 5357 2.691409 ATGTACAGTTCACCGGATGG 57.309 50.000 9.46 0.00 42.84 3.51
4756 5358 1.634960 TGTACAGTTCACCGGATGGA 58.365 50.000 9.46 0.00 39.21 3.41
4757 5359 1.548719 TGTACAGTTCACCGGATGGAG 59.451 52.381 9.46 0.00 39.21 3.86
4758 5360 1.134788 GTACAGTTCACCGGATGGAGG 60.135 57.143 9.46 0.00 39.21 4.30
4759 5361 1.221840 CAGTTCACCGGATGGAGGG 59.778 63.158 9.46 0.00 39.21 4.30
4760 5362 1.080354 AGTTCACCGGATGGAGGGA 59.920 57.895 9.46 0.00 39.21 4.20
4761 5363 0.978146 AGTTCACCGGATGGAGGGAG 60.978 60.000 9.46 0.00 39.21 4.30
4762 5364 1.080354 TTCACCGGATGGAGGGAGT 59.920 57.895 9.46 0.00 39.21 3.85
4763 5365 0.337082 TTCACCGGATGGAGGGAGTA 59.663 55.000 9.46 0.00 39.21 2.59
4764 5366 0.561184 TCACCGGATGGAGGGAGTAT 59.439 55.000 9.46 0.00 39.21 2.12
4772 5374 2.270434 TGGAGGGAGTATTTCCTGCT 57.730 50.000 5.65 0.00 45.98 4.24
4879 5486 4.240881 AGTGTCATTTGGATGTGGCTAT 57.759 40.909 0.00 0.00 34.77 2.97
5017 5625 7.865706 ATGACACTGGGAATTTATCACTTAC 57.134 36.000 0.00 0.00 30.45 2.34
5136 5745 5.707242 TTAGGTTATGTCAGATCTAGCCG 57.293 43.478 0.00 0.00 0.00 5.52
5210 5819 5.048083 GGCAGACAAACCAACATTATCTTGA 60.048 40.000 0.00 0.00 0.00 3.02
5253 5862 6.207025 TCTAAAGGATTAGTAGCTTCCTAGCG 59.793 42.308 4.31 0.00 43.94 4.26
5274 5883 4.557205 CGTAGATGTCTTATTACTGCCCC 58.443 47.826 0.00 0.00 0.00 5.80
5329 5938 3.780294 ACCATGTACCTGGAATCTAGCAA 59.220 43.478 22.41 0.00 39.73 3.91
5483 6093 6.775629 ACTGATAGGGCAAAGTTTTGTTCTTA 59.224 34.615 6.48 1.92 40.24 2.10
5527 6139 1.497223 GCGCCTCTCATCATGCAGTC 61.497 60.000 0.00 0.00 0.00 3.51
5548 6160 8.571336 GCAGTCCAACATAGATAAATTTATGCT 58.429 33.333 15.39 13.33 31.88 3.79
5595 6207 3.308323 GCTTTGCTTCTGATCCTACTTCG 59.692 47.826 0.00 0.00 0.00 3.79
5610 6222 6.168389 TCCTACTTCGTGACGAGCATATATA 58.832 40.000 8.02 0.00 37.14 0.86
5613 6226 7.968956 CCTACTTCGTGACGAGCATATATATTT 59.031 37.037 8.02 0.00 37.14 1.40
5643 6271 4.000988 TCGGACATGGTTAAAGAAAGCTC 58.999 43.478 0.00 0.00 36.51 4.09
5704 6335 2.621338 CCATCGCATTATAGCACGGAT 58.379 47.619 0.00 0.00 0.00 4.18
5876 6508 7.459795 TCGAGATTCTCTTGATATATGCTGT 57.540 36.000 11.75 0.00 32.15 4.40
5889 6521 2.267174 ATGCTGTCAGAGTGCAAGTT 57.733 45.000 3.32 0.00 40.24 2.66
5949 6581 1.751924 CCTTAGTGGACCTTCTCCTCG 59.248 57.143 0.00 0.00 40.26 4.63
5959 6591 1.407437 CCTTCTCCTCGGAAATGGGTG 60.407 57.143 0.00 0.00 0.00 4.61
5991 6623 2.558359 ACTGTGCCACTTTTTATGCCTC 59.442 45.455 0.00 0.00 0.00 4.70
6060 6692 4.038042 GCCTAATCTTTTATCACCCAAGCC 59.962 45.833 0.00 0.00 0.00 4.35
6063 6695 3.426787 TCTTTTATCACCCAAGCCGAA 57.573 42.857 0.00 0.00 0.00 4.30
6093 6732 2.079170 TCTGAGGGTAGCATCTCTGG 57.921 55.000 8.18 0.00 32.26 3.86
6106 6748 6.059787 AGCATCTCTGGTATTATTCCATCC 57.940 41.667 0.00 0.00 34.26 3.51
6109 6751 3.260884 TCTCTGGTATTATTCCATCCGGC 59.739 47.826 0.00 0.00 34.26 6.13
6159 6805 0.107897 ACAGAACCATATTCCGCGCA 60.108 50.000 8.75 0.00 0.00 6.09
6209 6855 1.994779 GGCTTGCCAAATTGACATTCG 59.005 47.619 6.79 0.00 0.00 3.34
6234 6880 1.820519 TGTAAATACGGCTCCACTCGT 59.179 47.619 0.00 0.00 42.55 4.18
6274 6925 9.358872 CCTTTCTTATTAACAAAATGAAGAGCC 57.641 33.333 0.00 0.00 0.00 4.70
6458 7136 9.856488 TCTTCACTAGTGCTAATAAACTAACAG 57.144 33.333 18.45 0.00 0.00 3.16
6597 7284 1.518352 CCGCGGACACGATCAATCA 60.518 57.895 24.07 0.00 44.60 2.57
6679 7368 2.526304 TTGGAGGTGAGACTTTCGTG 57.474 50.000 0.00 0.00 0.00 4.35
6700 7389 2.167861 GTCTTGGATCGCCAGCGTC 61.168 63.158 12.32 8.73 46.91 5.19
6823 7530 6.708949 TCTCGAAGCCACTTAACTAAAAATGT 59.291 34.615 0.00 0.00 0.00 2.71
6856 7563 5.501156 AGTCTAAGCAATCTTAACCCTTGG 58.499 41.667 0.00 0.00 34.62 3.61
6887 7594 1.518325 ATGTGAAACGAACCGCATCA 58.482 45.000 0.00 0.00 42.39 3.07
6921 7628 1.501654 AAAAGAGGGCCAGGTCTCCC 61.502 60.000 6.18 0.99 42.94 4.30
6941 7648 1.078709 ATGTCGTTGCCATTCTGTCG 58.921 50.000 0.00 0.00 0.00 4.35
6963 7671 5.062809 TCGAAACAAATGCCACAAGAAAAAC 59.937 36.000 0.00 0.00 0.00 2.43
6967 7675 4.094739 ACAAATGCCACAAGAAAAACAAGC 59.905 37.500 0.00 0.00 0.00 4.01
6973 7681 0.845768 CAAGAAAAACAAGCGGTGCG 59.154 50.000 0.00 0.00 0.00 5.34
6977 7685 0.248458 AAAAACAAGCGGTGCGACAG 60.248 50.000 0.00 0.00 0.00 3.51
6978 7686 1.092921 AAAACAAGCGGTGCGACAGA 61.093 50.000 0.00 0.00 0.00 3.41
6979 7687 1.092921 AAACAAGCGGTGCGACAGAA 61.093 50.000 0.00 0.00 0.00 3.02
6980 7688 0.884704 AACAAGCGGTGCGACAGAAT 60.885 50.000 0.00 0.00 0.00 2.40
6981 7689 0.884704 ACAAGCGGTGCGACAGAATT 60.885 50.000 0.00 0.00 0.00 2.17
6982 7690 0.238289 CAAGCGGTGCGACAGAATTT 59.762 50.000 0.00 0.00 0.00 1.82
6983 7691 0.517316 AAGCGGTGCGACAGAATTTC 59.483 50.000 0.00 0.00 0.00 2.17
6984 7692 0.602638 AGCGGTGCGACAGAATTTCA 60.603 50.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.936203 GCCGCCACGATATCCCCA 61.936 66.667 0.00 0.00 0.00 4.96
480 483 9.829507 ACCAACATGACAAAATTGAAAAGATAA 57.170 25.926 0.00 0.00 0.00 1.75
503 506 6.316640 TCAAATTACAAGTCACGAAAAGACCA 59.683 34.615 0.00 0.00 36.68 4.02
511 514 9.430623 TCATAAAGATCAAATTACAAGTCACGA 57.569 29.630 0.00 0.00 0.00 4.35
602 605 9.416284 TGCATGGCAATAAATATGATCATCTAT 57.584 29.630 12.53 5.37 34.76 1.98
603 606 8.810990 TGCATGGCAATAAATATGATCATCTA 57.189 30.769 12.53 3.11 34.76 1.98
604 607 7.712204 TGCATGGCAATAAATATGATCATCT 57.288 32.000 12.53 0.00 34.76 2.90
606 609 9.811995 GTTATGCATGGCAATAAATATGATCAT 57.188 29.630 13.81 13.81 43.62 2.45
607 610 8.804204 TGTTATGCATGGCAATAAATATGATCA 58.196 29.630 10.16 0.00 43.62 2.92
608 611 9.079833 GTGTTATGCATGGCAATAAATATGATC 57.920 33.333 10.16 0.00 43.62 2.92
609 612 8.586744 TGTGTTATGCATGGCAATAAATATGAT 58.413 29.630 10.16 0.00 43.62 2.45
610 613 7.949434 TGTGTTATGCATGGCAATAAATATGA 58.051 30.769 10.16 0.00 43.62 2.15
611 614 8.590719 TTGTGTTATGCATGGCAATAAATATG 57.409 30.769 10.16 0.00 43.62 1.78
612 615 9.610705 TTTTGTGTTATGCATGGCAATAAATAT 57.389 25.926 10.16 0.00 43.62 1.28
613 616 9.610705 ATTTTGTGTTATGCATGGCAATAAATA 57.389 25.926 10.16 0.00 43.62 1.40
614 617 7.918536 TTTTGTGTTATGCATGGCAATAAAT 57.081 28.000 10.16 0.00 43.62 1.40
615 618 7.918536 ATTTTGTGTTATGCATGGCAATAAA 57.081 28.000 10.16 11.15 43.62 1.40
616 619 8.256605 ACTATTTTGTGTTATGCATGGCAATAA 58.743 29.630 10.16 4.66 43.62 1.40
617 620 7.780064 ACTATTTTGTGTTATGCATGGCAATA 58.220 30.769 10.16 4.98 43.62 1.90
618 621 6.642430 ACTATTTTGTGTTATGCATGGCAAT 58.358 32.000 10.16 1.60 43.62 3.56
619 622 6.035368 ACTATTTTGTGTTATGCATGGCAA 57.965 33.333 10.16 6.24 43.62 4.52
620 623 5.657826 ACTATTTTGTGTTATGCATGGCA 57.342 34.783 10.16 5.14 44.86 4.92
621 624 9.180678 GTTATACTATTTTGTGTTATGCATGGC 57.819 33.333 10.16 2.21 0.00 4.40
661 664 9.359653 GGGTTAGAGTAACATAAGTAGATACCA 57.640 37.037 0.00 0.00 40.39 3.25
662 665 9.585369 AGGGTTAGAGTAACATAAGTAGATACC 57.415 37.037 0.00 0.00 40.39 2.73
665 668 9.939424 AAGAGGGTTAGAGTAACATAAGTAGAT 57.061 33.333 0.00 0.00 40.39 1.98
666 669 9.765295 AAAGAGGGTTAGAGTAACATAAGTAGA 57.235 33.333 0.00 0.00 40.39 2.59
707 710 8.817100 TCGAAAATAGTAAACATGCTGATGTAG 58.183 33.333 0.00 0.00 42.30 2.74
708 711 8.710835 TCGAAAATAGTAAACATGCTGATGTA 57.289 30.769 0.00 0.00 42.30 2.29
709 712 7.334421 ACTCGAAAATAGTAAACATGCTGATGT 59.666 33.333 0.00 0.00 45.24 3.06
710 713 7.637519 CACTCGAAAATAGTAAACATGCTGATG 59.362 37.037 0.00 0.00 35.49 3.07
711 714 7.677276 GCACTCGAAAATAGTAAACATGCTGAT 60.677 37.037 0.00 0.00 0.00 2.90
712 715 6.402118 GCACTCGAAAATAGTAAACATGCTGA 60.402 38.462 0.00 0.00 0.00 4.26
713 716 5.734498 GCACTCGAAAATAGTAAACATGCTG 59.266 40.000 0.00 0.00 0.00 4.41
714 717 5.411361 TGCACTCGAAAATAGTAAACATGCT 59.589 36.000 0.00 0.00 0.00 3.79
715 718 5.627172 TGCACTCGAAAATAGTAAACATGC 58.373 37.500 0.00 0.00 0.00 4.06
716 719 7.463544 TCATGCACTCGAAAATAGTAAACATG 58.536 34.615 0.00 0.00 35.44 3.21
717 720 7.609760 TCATGCACTCGAAAATAGTAAACAT 57.390 32.000 0.00 0.00 0.00 2.71
718 721 7.609760 ATCATGCACTCGAAAATAGTAAACA 57.390 32.000 0.00 0.00 0.00 2.83
719 722 8.062448 GGTATCATGCACTCGAAAATAGTAAAC 58.938 37.037 0.00 0.00 0.00 2.01
720 723 7.042992 CGGTATCATGCACTCGAAAATAGTAAA 60.043 37.037 0.00 0.00 0.00 2.01
721 724 6.419710 CGGTATCATGCACTCGAAAATAGTAA 59.580 38.462 0.00 0.00 0.00 2.24
722 725 5.918576 CGGTATCATGCACTCGAAAATAGTA 59.081 40.000 0.00 0.00 0.00 1.82
723 726 4.745125 CGGTATCATGCACTCGAAAATAGT 59.255 41.667 0.00 0.00 0.00 2.12
724 727 4.150627 CCGGTATCATGCACTCGAAAATAG 59.849 45.833 0.00 0.00 0.00 1.73
725 728 4.055360 CCGGTATCATGCACTCGAAAATA 58.945 43.478 0.00 0.00 0.00 1.40
726 729 2.872245 CCGGTATCATGCACTCGAAAAT 59.128 45.455 0.00 0.00 0.00 1.82
727 730 2.276201 CCGGTATCATGCACTCGAAAA 58.724 47.619 0.00 0.00 0.00 2.29
728 731 1.934589 CCGGTATCATGCACTCGAAA 58.065 50.000 0.00 0.00 0.00 3.46
729 732 0.529773 GCCGGTATCATGCACTCGAA 60.530 55.000 1.90 0.00 0.00 3.71
730 733 1.067416 GCCGGTATCATGCACTCGA 59.933 57.895 1.90 0.00 0.00 4.04
731 734 0.313987 TAGCCGGTATCATGCACTCG 59.686 55.000 1.90 0.00 0.00 4.18
732 735 2.029020 TCATAGCCGGTATCATGCACTC 60.029 50.000 1.90 0.00 0.00 3.51
733 736 1.970640 TCATAGCCGGTATCATGCACT 59.029 47.619 1.90 0.00 0.00 4.40
734 737 2.455674 TCATAGCCGGTATCATGCAC 57.544 50.000 1.90 0.00 0.00 4.57
735 738 2.936553 GCATCATAGCCGGTATCATGCA 60.937 50.000 18.28 0.00 43.36 3.96
736 739 1.667724 GCATCATAGCCGGTATCATGC 59.332 52.381 10.18 10.18 38.31 4.06
737 740 2.283298 GGCATCATAGCCGGTATCATG 58.717 52.381 1.90 3.53 46.12 3.07
738 741 2.698855 GGCATCATAGCCGGTATCAT 57.301 50.000 1.90 0.00 46.12 2.45
747 750 2.430465 CCATAGTGGTGGCATCATAGC 58.570 52.381 2.60 0.00 31.35 2.97
759 762 0.911769 TCCAAGGCTGACCATAGTGG 59.088 55.000 0.00 0.00 45.02 4.00
760 763 2.787473 TTCCAAGGCTGACCATAGTG 57.213 50.000 0.00 0.00 39.06 2.74
761 764 2.025887 CCTTTCCAAGGCTGACCATAGT 60.026 50.000 0.00 0.00 42.78 2.12
762 765 2.648059 CCTTTCCAAGGCTGACCATAG 58.352 52.381 0.00 0.00 42.78 2.23
763 766 2.806945 CCTTTCCAAGGCTGACCATA 57.193 50.000 0.00 0.00 42.78 2.74
764 767 3.677963 CCTTTCCAAGGCTGACCAT 57.322 52.632 0.00 0.00 42.78 3.55
773 776 1.202290 GCACACACACACCTTTCCAAG 60.202 52.381 0.00 0.00 0.00 3.61
774 777 0.814457 GCACACACACACCTTTCCAA 59.186 50.000 0.00 0.00 0.00 3.53
775 778 0.034574 AGCACACACACACCTTTCCA 60.035 50.000 0.00 0.00 0.00 3.53
776 779 0.663153 GAGCACACACACACCTTTCC 59.337 55.000 0.00 0.00 0.00 3.13
777 780 0.304705 CGAGCACACACACACCTTTC 59.695 55.000 0.00 0.00 0.00 2.62
778 781 1.095228 CCGAGCACACACACACCTTT 61.095 55.000 0.00 0.00 0.00 3.11
779 782 1.523711 CCGAGCACACACACACCTT 60.524 57.895 0.00 0.00 0.00 3.50
780 783 2.108976 CCGAGCACACACACACCT 59.891 61.111 0.00 0.00 0.00 4.00
781 784 2.972505 CCCGAGCACACACACACC 60.973 66.667 0.00 0.00 0.00 4.16
782 785 1.956170 CTCCCGAGCACACACACAC 60.956 63.158 0.00 0.00 0.00 3.82
783 786 2.421314 CTCCCGAGCACACACACA 59.579 61.111 0.00 0.00 0.00 3.72
822 827 2.807108 GCCCGCCTAGGTAAAAGATCTG 60.807 54.545 11.31 0.00 38.74 2.90
823 828 1.416772 GCCCGCCTAGGTAAAAGATCT 59.583 52.381 11.31 0.00 38.74 2.75
827 832 2.490991 GTATGCCCGCCTAGGTAAAAG 58.509 52.381 11.31 0.00 38.74 2.27
838 843 0.453782 GAAACAACACGTATGCCCGC 60.454 55.000 0.00 0.00 0.00 6.13
855 860 2.028203 TCAGGAACATGTCATCAGCGAA 60.028 45.455 0.00 0.00 0.00 4.70
857 862 2.014335 TCAGGAACATGTCATCAGCG 57.986 50.000 0.00 0.00 0.00 5.18
867 872 4.286297 TCCGTCTTTCATTCAGGAACAT 57.714 40.909 0.00 0.00 0.00 2.71
892 897 3.629438 TTCGAAAACGGGTTTCCATTC 57.371 42.857 12.62 0.00 42.39 2.67
895 900 1.063764 CGTTTCGAAAACGGGTTTCCA 59.936 47.619 13.10 0.00 42.39 3.53
898 903 1.268184 GCTCGTTTCGAAAACGGGTTT 60.268 47.619 23.76 0.00 45.25 3.27
933 938 1.004918 GTGTGGCAGAGCGTAACCT 60.005 57.895 0.00 0.00 0.00 3.50
936 941 0.391130 GATGGTGTGGCAGAGCGTAA 60.391 55.000 8.65 0.00 0.00 3.18
961 974 1.822990 CTCTTTCCGCTACCAGTACCA 59.177 52.381 0.00 0.00 0.00 3.25
963 976 4.023021 CCTATCTCTTTCCGCTACCAGTAC 60.023 50.000 0.00 0.00 0.00 2.73
964 977 4.141321 TCCTATCTCTTTCCGCTACCAGTA 60.141 45.833 0.00 0.00 0.00 2.74
965 978 2.959707 CCTATCTCTTTCCGCTACCAGT 59.040 50.000 0.00 0.00 0.00 4.00
966 979 3.223435 TCCTATCTCTTTCCGCTACCAG 58.777 50.000 0.00 0.00 0.00 4.00
967 980 3.308035 TCCTATCTCTTTCCGCTACCA 57.692 47.619 0.00 0.00 0.00 3.25
968 981 3.890147 TCTTCCTATCTCTTTCCGCTACC 59.110 47.826 0.00 0.00 0.00 3.18
969 982 4.822896 TCTCTTCCTATCTCTTTCCGCTAC 59.177 45.833 0.00 0.00 0.00 3.58
1077 1091 1.522092 CTTGGCACGCTCCTGGATA 59.478 57.895 0.00 0.00 0.00 2.59
1138 1152 1.812686 CGACGGACTTGGAACTCCCA 61.813 60.000 0.00 0.00 44.93 4.37
1202 1216 1.059838 GTAACCGATTTGTCGCCGC 59.940 57.895 0.00 0.00 0.00 6.53
1204 1218 1.711500 CCGTAACCGATTTGTCGCC 59.289 57.895 0.00 0.00 35.63 5.54
1205 1219 1.059838 GCCGTAACCGATTTGTCGC 59.940 57.895 0.00 0.00 35.63 5.19
1244 1258 2.435693 CCTCTCTCCCGCCGGAATT 61.436 63.158 5.05 0.00 37.86 2.17
1313 1327 3.006112 AGAGATAGCAGGAACTCGACA 57.994 47.619 0.00 0.00 34.60 4.35
1314 1328 4.131596 AGTAGAGATAGCAGGAACTCGAC 58.868 47.826 0.00 0.00 34.60 4.20
1366 1381 3.953612 TGGATGAAAACATGCTCATACCC 59.046 43.478 11.02 7.75 32.67 3.69
1413 1428 2.456577 GGCACACCCAGAAATTATGGT 58.543 47.619 5.88 0.00 35.96 3.55
1478 1493 1.699634 CCTTCCTTCCCTGTGAGACAA 59.300 52.381 0.00 0.00 0.00 3.18
1544 1559 2.287188 GCAAACATATCAGGATGTGCGG 60.287 50.000 6.00 0.00 39.99 5.69
1584 1599 7.696992 TCACAGTCAACATGTATAGTACTCA 57.303 36.000 0.00 0.00 0.00 3.41
1585 1600 9.025020 CAATCACAGTCAACATGTATAGTACTC 57.975 37.037 0.00 0.00 0.00 2.59
1586 1601 7.981789 CCAATCACAGTCAACATGTATAGTACT 59.018 37.037 0.00 0.00 0.00 2.73
1587 1602 7.224753 CCCAATCACAGTCAACATGTATAGTAC 59.775 40.741 0.00 0.00 0.00 2.73
1588 1603 7.272244 CCCAATCACAGTCAACATGTATAGTA 58.728 38.462 0.00 0.00 0.00 1.82
1589 1604 6.115446 CCCAATCACAGTCAACATGTATAGT 58.885 40.000 0.00 0.00 0.00 2.12
1590 1605 5.008019 GCCCAATCACAGTCAACATGTATAG 59.992 44.000 0.00 0.00 0.00 1.31
1591 1606 4.881273 GCCCAATCACAGTCAACATGTATA 59.119 41.667 0.00 0.00 0.00 1.47
1592 1607 3.696051 GCCCAATCACAGTCAACATGTAT 59.304 43.478 0.00 0.00 0.00 2.29
1593 1608 3.081061 GCCCAATCACAGTCAACATGTA 58.919 45.455 0.00 0.00 0.00 2.29
1594 1609 1.888512 GCCCAATCACAGTCAACATGT 59.111 47.619 0.00 0.00 0.00 3.21
1595 1610 1.887854 TGCCCAATCACAGTCAACATG 59.112 47.619 0.00 0.00 0.00 3.21
1596 1611 2.291209 TGCCCAATCACAGTCAACAT 57.709 45.000 0.00 0.00 0.00 2.71
1658 1676 3.282021 GAGGTGCTCCATAATTTGCAGA 58.718 45.455 7.70 0.00 36.03 4.26
1934 1952 1.105457 TTAGCCATGCAATCACAGGC 58.895 50.000 0.00 0.00 43.32 4.85
1994 2012 6.209788 GGATGTTTACATTAGGGTTGGTTTGA 59.790 38.462 0.00 0.00 36.57 2.69
2138 2156 3.025978 CAAATCCAGGGCAGAAATGCTA 58.974 45.455 0.00 0.00 34.73 3.49
2312 2330 3.326006 GGACCTCCAGATTATCTGCATCA 59.674 47.826 16.18 0.00 42.98 3.07
2363 2381 1.065564 CCCTTCCCAGAGAGCTCAAAG 60.066 57.143 17.77 8.86 0.00 2.77
2669 2687 3.338249 CGAAACATTCTCCAGTGGTGAT 58.662 45.455 14.49 0.00 0.00 3.06
2924 2942 3.028850 CAAGGATGATGAATGCCCACTT 58.971 45.455 0.00 0.00 0.00 3.16
2984 3002 3.438781 TGGAATACATGCCGAAGTCAAAC 59.561 43.478 0.00 0.00 0.00 2.93
2993 3011 1.466167 GCTATGCTGGAATACATGCCG 59.534 52.381 0.00 0.00 0.00 5.69
3071 3089 3.808726 CACAAAGATAGCCAGAGATGAGC 59.191 47.826 0.00 0.00 0.00 4.26
3090 3108 6.926272 GCACCAACCAAGATTAATTTTACACA 59.074 34.615 0.00 0.00 0.00 3.72
3218 3236 7.181569 TGATTCTGAAGGTTCCAAAGTTTTT 57.818 32.000 0.00 0.00 0.00 1.94
3274 3294 8.545472 AGAAGCCTGTTATGTTGTACCTATTTA 58.455 33.333 0.00 0.00 0.00 1.40
3321 3341 5.528690 ACATATGCCAACAGCTACAACTATG 59.471 40.000 1.58 0.00 44.23 2.23
3353 3373 6.676990 TGATGACTACATGGATAGCAGATT 57.323 37.500 0.00 0.00 36.82 2.40
3392 3414 2.634940 GGCAGCCTCTCTATTACATGGA 59.365 50.000 3.29 0.00 0.00 3.41
3397 3419 4.572795 GTGAAAAGGCAGCCTCTCTATTAC 59.427 45.833 16.53 5.30 30.89 1.89
3794 3843 6.132236 CCAAATGGAAAGAGCATAAGTGCAC 61.132 44.000 9.40 9.40 45.77 4.57
3816 3865 2.290641 ACGTCATGGGCAAGATTTACCA 60.291 45.455 0.00 0.00 37.41 3.25
3895 3944 1.489649 CTCTGTCCCTACCGGTCTAGA 59.510 57.143 12.40 2.69 0.00 2.43
3988 4037 4.082787 CCCATAAACCTGATTGTGTGTCAC 60.083 45.833 0.00 0.00 34.56 3.67
3994 4043 6.520272 TCAAAAACCCATAAACCTGATTGTG 58.480 36.000 0.00 0.00 0.00 3.33
4011 4060 6.197282 GCAGAACTAGTCAAAGCTTCAAAAAC 59.803 38.462 0.00 0.00 0.00 2.43
4125 4174 1.197721 GCAAAGAGTTCACGACATGGG 59.802 52.381 0.00 0.00 0.00 4.00
4171 4220 0.612744 ATTGCCGTTTTTCCCATGGG 59.387 50.000 26.30 26.30 0.00 4.00
4265 4314 3.228188 TGAAATCCATGGGCAGTATCC 57.772 47.619 13.02 0.00 0.00 2.59
4364 4435 2.971430 GACTTGGAAAAAGTCGAGCC 57.029 50.000 2.72 0.00 37.51 4.70
4369 4440 2.483106 GGGTAGCGACTTGGAAAAAGTC 59.517 50.000 7.94 7.94 42.33 3.01
4379 4450 1.742268 GTCGTTCTAGGGTAGCGACTT 59.258 52.381 10.67 0.00 45.52 3.01
4410 4481 1.539929 GGCATTAGTGAGCTGCTCGAT 60.540 52.381 23.35 16.64 36.18 3.59
4411 4482 0.179100 GGCATTAGTGAGCTGCTCGA 60.179 55.000 23.35 10.88 36.18 4.04
4412 4483 1.156645 GGGCATTAGTGAGCTGCTCG 61.157 60.000 23.35 10.00 36.18 5.03
4428 5030 6.653989 AGTGGATATAATAGCATTAGTGGGC 58.346 40.000 0.00 0.00 0.00 5.36
4429 5031 8.103305 ACAAGTGGATATAATAGCATTAGTGGG 58.897 37.037 0.00 0.00 0.00 4.61
4430 5032 9.155975 GACAAGTGGATATAATAGCATTAGTGG 57.844 37.037 0.00 0.00 0.00 4.00
4431 5033 9.710900 TGACAAGTGGATATAATAGCATTAGTG 57.289 33.333 0.00 0.00 0.00 2.74
4432 5034 9.935241 CTGACAAGTGGATATAATAGCATTAGT 57.065 33.333 0.00 0.00 0.00 2.24
4433 5035 9.935241 ACTGACAAGTGGATATAATAGCATTAG 57.065 33.333 0.00 0.00 34.48 1.73
4470 5072 0.685097 TTTTCACCAGACGGAGGGAG 59.315 55.000 0.00 0.00 35.59 4.30
4471 5073 0.685097 CTTTTCACCAGACGGAGGGA 59.315 55.000 0.00 0.00 35.59 4.20
4472 5074 0.396811 ACTTTTCACCAGACGGAGGG 59.603 55.000 0.00 0.00 35.59 4.30
4473 5075 1.608283 GGACTTTTCACCAGACGGAGG 60.608 57.143 0.00 0.00 35.59 4.30
4474 5076 1.070134 TGGACTTTTCACCAGACGGAG 59.930 52.381 0.00 0.00 35.59 4.63
4475 5077 1.124780 TGGACTTTTCACCAGACGGA 58.875 50.000 0.00 0.00 35.59 4.69
4476 5078 1.226746 GTGGACTTTTCACCAGACGG 58.773 55.000 0.00 0.00 36.82 4.79
4477 5079 1.948104 TGTGGACTTTTCACCAGACG 58.052 50.000 0.00 0.00 36.82 4.18
4478 5080 4.894784 TCTATGTGGACTTTTCACCAGAC 58.105 43.478 0.00 0.00 36.82 3.51
4479 5081 4.838423 TCTCTATGTGGACTTTTCACCAGA 59.162 41.667 0.00 0.00 36.82 3.86
4480 5082 5.152623 TCTCTATGTGGACTTTTCACCAG 57.847 43.478 0.00 0.00 36.82 4.00
4481 5083 5.560722 TTCTCTATGTGGACTTTTCACCA 57.439 39.130 0.00 0.00 34.46 4.17
4482 5084 7.454260 AATTTCTCTATGTGGACTTTTCACC 57.546 36.000 0.00 0.00 34.46 4.02
4486 5088 9.807921 TCCTAAAATTTCTCTATGTGGACTTTT 57.192 29.630 0.00 0.00 0.00 2.27
4487 5089 9.232473 GTCCTAAAATTTCTCTATGTGGACTTT 57.768 33.333 0.00 0.00 37.73 2.66
4488 5090 8.383175 TGTCCTAAAATTTCTCTATGTGGACTT 58.617 33.333 0.00 0.00 40.37 3.01
4489 5091 7.918076 TGTCCTAAAATTTCTCTATGTGGACT 58.082 34.615 0.00 0.00 40.37 3.85
4490 5092 8.561738 TTGTCCTAAAATTTCTCTATGTGGAC 57.438 34.615 0.00 0.00 40.20 4.02
4491 5093 9.753674 ATTTGTCCTAAAATTTCTCTATGTGGA 57.246 29.630 0.00 0.00 0.00 4.02
4525 5127 2.226200 GCGCCTTTCCAATTGCATTTTT 59.774 40.909 0.00 0.00 0.00 1.94
4526 5128 1.805943 GCGCCTTTCCAATTGCATTTT 59.194 42.857 0.00 0.00 0.00 1.82
4527 5129 1.270732 TGCGCCTTTCCAATTGCATTT 60.271 42.857 4.18 0.00 0.00 2.32
4528 5130 0.321021 TGCGCCTTTCCAATTGCATT 59.679 45.000 4.18 0.00 0.00 3.56
4529 5131 0.321021 TTGCGCCTTTCCAATTGCAT 59.679 45.000 4.18 0.00 31.70 3.96
4530 5132 0.319727 CTTGCGCCTTTCCAATTGCA 60.320 50.000 4.18 0.00 0.00 4.08
4531 5133 1.629345 GCTTGCGCCTTTCCAATTGC 61.629 55.000 4.18 0.00 0.00 3.56
4532 5134 2.448477 GCTTGCGCCTTTCCAATTG 58.552 52.632 4.18 0.00 0.00 2.32
4533 5135 4.994744 GCTTGCGCCTTTCCAATT 57.005 50.000 4.18 0.00 0.00 2.32
4543 5145 2.437359 AGAGATGGTGGCTTGCGC 60.437 61.111 0.00 0.00 0.00 6.09
4544 5146 0.809241 GAGAGAGATGGTGGCTTGCG 60.809 60.000 0.00 0.00 0.00 4.85
4545 5147 0.463474 GGAGAGAGATGGTGGCTTGC 60.463 60.000 0.00 0.00 0.00 4.01
4546 5148 1.138661 GAGGAGAGAGATGGTGGCTTG 59.861 57.143 0.00 0.00 0.00 4.01
4547 5149 1.008206 AGAGGAGAGAGATGGTGGCTT 59.992 52.381 0.00 0.00 0.00 4.35
4548 5150 0.636101 AGAGGAGAGAGATGGTGGCT 59.364 55.000 0.00 0.00 0.00 4.75
4549 5151 1.494960 AAGAGGAGAGAGATGGTGGC 58.505 55.000 0.00 0.00 0.00 5.01
4550 5152 5.885449 ATTAAAGAGGAGAGAGATGGTGG 57.115 43.478 0.00 0.00 0.00 4.61
4551 5153 7.213678 GGTAATTAAAGAGGAGAGAGATGGTG 58.786 42.308 0.00 0.00 0.00 4.17
4552 5154 6.327887 GGGTAATTAAAGAGGAGAGAGATGGT 59.672 42.308 0.00 0.00 0.00 3.55
4553 5155 6.327626 TGGGTAATTAAAGAGGAGAGAGATGG 59.672 42.308 0.00 0.00 0.00 3.51
4554 5156 7.366847 TGGGTAATTAAAGAGGAGAGAGATG 57.633 40.000 0.00 0.00 0.00 2.90
4555 5157 7.147461 GGTTGGGTAATTAAAGAGGAGAGAGAT 60.147 40.741 0.00 0.00 0.00 2.75
4556 5158 6.156429 GGTTGGGTAATTAAAGAGGAGAGAGA 59.844 42.308 0.00 0.00 0.00 3.10
4557 5159 6.350103 GGTTGGGTAATTAAAGAGGAGAGAG 58.650 44.000 0.00 0.00 0.00 3.20
4558 5160 5.191124 GGGTTGGGTAATTAAAGAGGAGAGA 59.809 44.000 0.00 0.00 0.00 3.10
4559 5161 5.437946 GGGTTGGGTAATTAAAGAGGAGAG 58.562 45.833 0.00 0.00 0.00 3.20
4560 5162 4.228895 GGGGTTGGGTAATTAAAGAGGAGA 59.771 45.833 0.00 0.00 0.00 3.71
4561 5163 4.017867 TGGGGTTGGGTAATTAAAGAGGAG 60.018 45.833 0.00 0.00 0.00 3.69
4562 5164 3.924072 TGGGGTTGGGTAATTAAAGAGGA 59.076 43.478 0.00 0.00 0.00 3.71
4563 5165 4.325084 TGGGGTTGGGTAATTAAAGAGG 57.675 45.455 0.00 0.00 0.00 3.69
4564 5166 5.955355 TCATTGGGGTTGGGTAATTAAAGAG 59.045 40.000 0.00 0.00 0.00 2.85
4565 5167 5.905088 TCATTGGGGTTGGGTAATTAAAGA 58.095 37.500 0.00 0.00 0.00 2.52
4566 5168 5.395214 GCTCATTGGGGTTGGGTAATTAAAG 60.395 44.000 0.00 0.00 0.00 1.85
4567 5169 4.468153 GCTCATTGGGGTTGGGTAATTAAA 59.532 41.667 0.00 0.00 0.00 1.52
4568 5170 4.027437 GCTCATTGGGGTTGGGTAATTAA 58.973 43.478 0.00 0.00 0.00 1.40
4569 5171 3.270960 AGCTCATTGGGGTTGGGTAATTA 59.729 43.478 0.00 0.00 0.00 1.40
4570 5172 2.044353 AGCTCATTGGGGTTGGGTAATT 59.956 45.455 0.00 0.00 0.00 1.40
4571 5173 1.645919 AGCTCATTGGGGTTGGGTAAT 59.354 47.619 0.00 0.00 0.00 1.89
4572 5174 1.080638 AGCTCATTGGGGTTGGGTAA 58.919 50.000 0.00 0.00 0.00 2.85
4573 5175 1.974028 TAGCTCATTGGGGTTGGGTA 58.026 50.000 0.00 0.00 0.00 3.69
4574 5176 1.005924 CTTAGCTCATTGGGGTTGGGT 59.994 52.381 0.00 0.00 0.00 4.51
4575 5177 1.005924 ACTTAGCTCATTGGGGTTGGG 59.994 52.381 0.00 0.00 0.00 4.12
4576 5178 2.094675 CACTTAGCTCATTGGGGTTGG 58.905 52.381 0.00 0.00 0.00 3.77
4577 5179 1.474077 GCACTTAGCTCATTGGGGTTG 59.526 52.381 0.00 0.00 41.15 3.77
4578 5180 1.075374 TGCACTTAGCTCATTGGGGTT 59.925 47.619 0.00 0.00 45.94 4.11
4579 5181 0.698238 TGCACTTAGCTCATTGGGGT 59.302 50.000 0.00 0.00 45.94 4.95
4580 5182 1.679680 CATGCACTTAGCTCATTGGGG 59.320 52.381 0.00 0.00 45.94 4.96
4581 5183 2.372264 ACATGCACTTAGCTCATTGGG 58.628 47.619 0.00 0.00 45.94 4.12
4582 5184 4.445453 TCTACATGCACTTAGCTCATTGG 58.555 43.478 0.00 0.00 45.94 3.16
4583 5185 6.426980 TTTCTACATGCACTTAGCTCATTG 57.573 37.500 0.00 0.00 45.94 2.82
4584 5186 7.636150 AATTTCTACATGCACTTAGCTCATT 57.364 32.000 0.00 0.00 45.94 2.57
4585 5187 8.737168 TTAATTTCTACATGCACTTAGCTCAT 57.263 30.769 0.00 0.00 45.94 2.90
4586 5188 7.280876 CCTTAATTTCTACATGCACTTAGCTCA 59.719 37.037 0.00 0.00 45.94 4.26
4587 5189 7.495934 TCCTTAATTTCTACATGCACTTAGCTC 59.504 37.037 0.00 0.00 45.94 4.09
4588 5190 7.338710 TCCTTAATTTCTACATGCACTTAGCT 58.661 34.615 0.00 0.00 45.94 3.32
4589 5191 7.495934 TCTCCTTAATTTCTACATGCACTTAGC 59.504 37.037 0.00 0.00 45.96 3.09
4590 5192 8.821894 GTCTCCTTAATTTCTACATGCACTTAG 58.178 37.037 0.00 0.00 0.00 2.18
4591 5193 7.769044 GGTCTCCTTAATTTCTACATGCACTTA 59.231 37.037 0.00 0.00 0.00 2.24
4592 5194 6.599638 GGTCTCCTTAATTTCTACATGCACTT 59.400 38.462 0.00 0.00 0.00 3.16
4593 5195 6.116126 GGTCTCCTTAATTTCTACATGCACT 58.884 40.000 0.00 0.00 0.00 4.40
4594 5196 5.880332 TGGTCTCCTTAATTTCTACATGCAC 59.120 40.000 0.00 0.00 0.00 4.57
4595 5197 6.061022 TGGTCTCCTTAATTTCTACATGCA 57.939 37.500 0.00 0.00 0.00 3.96
4596 5198 6.543831 ACATGGTCTCCTTAATTTCTACATGC 59.456 38.462 0.00 0.00 36.40 4.06
4597 5199 7.554118 ACACATGGTCTCCTTAATTTCTACATG 59.446 37.037 0.00 0.00 38.27 3.21
4598 5200 7.633789 ACACATGGTCTCCTTAATTTCTACAT 58.366 34.615 0.00 0.00 0.00 2.29
4599 5201 7.016153 ACACATGGTCTCCTTAATTTCTACA 57.984 36.000 0.00 0.00 0.00 2.74
4600 5202 8.475639 TCTACACATGGTCTCCTTAATTTCTAC 58.524 37.037 0.00 0.00 0.00 2.59
4601 5203 8.603898 TCTACACATGGTCTCCTTAATTTCTA 57.396 34.615 0.00 0.00 0.00 2.10
4602 5204 7.496346 TCTACACATGGTCTCCTTAATTTCT 57.504 36.000 0.00 0.00 0.00 2.52
4603 5205 8.616076 CATTCTACACATGGTCTCCTTAATTTC 58.384 37.037 0.00 0.00 0.00 2.17
4604 5206 8.109634 ACATTCTACACATGGTCTCCTTAATTT 58.890 33.333 0.00 0.00 0.00 1.82
4605 5207 7.633789 ACATTCTACACATGGTCTCCTTAATT 58.366 34.615 0.00 0.00 0.00 1.40
4606 5208 7.200434 ACATTCTACACATGGTCTCCTTAAT 57.800 36.000 0.00 0.00 0.00 1.40
4607 5209 6.620877 ACATTCTACACATGGTCTCCTTAA 57.379 37.500 0.00 0.00 0.00 1.85
4608 5210 6.620877 AACATTCTACACATGGTCTCCTTA 57.379 37.500 0.00 0.00 0.00 2.69
4609 5211 5.505181 AACATTCTACACATGGTCTCCTT 57.495 39.130 0.00 0.00 0.00 3.36
4610 5212 6.814954 ATAACATTCTACACATGGTCTCCT 57.185 37.500 0.00 0.00 0.00 3.69
4611 5213 6.260936 CCAATAACATTCTACACATGGTCTCC 59.739 42.308 0.00 0.00 0.00 3.71
4612 5214 6.823689 ACCAATAACATTCTACACATGGTCTC 59.176 38.462 0.00 0.00 33.59 3.36
4613 5215 6.721318 ACCAATAACATTCTACACATGGTCT 58.279 36.000 0.00 0.00 33.59 3.85
4614 5216 7.016361 GACCAATAACATTCTACACATGGTC 57.984 40.000 5.47 5.47 45.04 4.02
4615 5217 6.721318 AGACCAATAACATTCTACACATGGT 58.279 36.000 0.00 0.00 41.10 3.55
4616 5218 7.336679 TCAAGACCAATAACATTCTACACATGG 59.663 37.037 0.00 0.00 0.00 3.66
4617 5219 8.267620 TCAAGACCAATAACATTCTACACATG 57.732 34.615 0.00 0.00 0.00 3.21
4618 5220 9.466497 AATCAAGACCAATAACATTCTACACAT 57.534 29.630 0.00 0.00 0.00 3.21
4619 5221 8.862325 AATCAAGACCAATAACATTCTACACA 57.138 30.769 0.00 0.00 0.00 3.72
4621 5223 9.391006 GGTAATCAAGACCAATAACATTCTACA 57.609 33.333 0.00 0.00 36.91 2.74
4622 5224 9.614792 AGGTAATCAAGACCAATAACATTCTAC 57.385 33.333 0.00 0.00 39.65 2.59
4624 5226 8.960591 CAAGGTAATCAAGACCAATAACATTCT 58.039 33.333 0.00 0.00 39.65 2.40
4625 5227 8.739972 ACAAGGTAATCAAGACCAATAACATTC 58.260 33.333 0.00 0.00 39.65 2.67
4626 5228 8.522830 CACAAGGTAATCAAGACCAATAACATT 58.477 33.333 0.00 0.00 39.65 2.71
4627 5229 7.888021 TCACAAGGTAATCAAGACCAATAACAT 59.112 33.333 0.00 0.00 39.65 2.71
4628 5230 7.227873 TCACAAGGTAATCAAGACCAATAACA 58.772 34.615 0.00 0.00 39.65 2.41
4629 5231 7.681939 TCACAAGGTAATCAAGACCAATAAC 57.318 36.000 0.00 0.00 39.65 1.89
4630 5232 8.106462 TCATCACAAGGTAATCAAGACCAATAA 58.894 33.333 0.00 0.00 39.65 1.40
4631 5233 7.629157 TCATCACAAGGTAATCAAGACCAATA 58.371 34.615 0.00 0.00 39.65 1.90
4632 5234 6.484288 TCATCACAAGGTAATCAAGACCAAT 58.516 36.000 0.00 0.00 39.65 3.16
4633 5235 5.875224 TCATCACAAGGTAATCAAGACCAA 58.125 37.500 0.00 0.00 39.65 3.67
4634 5236 5.248248 TCTCATCACAAGGTAATCAAGACCA 59.752 40.000 0.00 0.00 39.65 4.02
4635 5237 5.734720 TCTCATCACAAGGTAATCAAGACC 58.265 41.667 0.00 0.00 37.22 3.85
4636 5238 6.634805 TCTCTCATCACAAGGTAATCAAGAC 58.365 40.000 0.00 0.00 0.00 3.01
4637 5239 6.665248 TCTCTCTCATCACAAGGTAATCAAGA 59.335 38.462 0.00 0.00 0.00 3.02
4638 5240 6.871844 TCTCTCTCATCACAAGGTAATCAAG 58.128 40.000 0.00 0.00 0.00 3.02
4639 5241 6.857437 TCTCTCTCATCACAAGGTAATCAA 57.143 37.500 0.00 0.00 0.00 2.57
4640 5242 6.857437 TTCTCTCTCATCACAAGGTAATCA 57.143 37.500 0.00 0.00 0.00 2.57
4641 5243 7.099764 TGTTTCTCTCTCATCACAAGGTAATC 58.900 38.462 0.00 0.00 0.00 1.75
4642 5244 7.009179 TGTTTCTCTCTCATCACAAGGTAAT 57.991 36.000 0.00 0.00 0.00 1.89
4643 5245 6.419484 TGTTTCTCTCTCATCACAAGGTAA 57.581 37.500 0.00 0.00 0.00 2.85
4644 5246 6.611613 ATGTTTCTCTCTCATCACAAGGTA 57.388 37.500 0.00 0.00 0.00 3.08
4645 5247 4.963318 TGTTTCTCTCTCATCACAAGGT 57.037 40.909 0.00 0.00 0.00 3.50
4646 5248 6.814506 AAATGTTTCTCTCTCATCACAAGG 57.185 37.500 0.00 0.00 0.00 3.61
4671 5273 9.787435 TCTTCCTAATGCACTTTAAAGTAGAAA 57.213 29.630 20.15 3.81 37.08 2.52
4672 5274 9.959721 ATCTTCCTAATGCACTTTAAAGTAGAA 57.040 29.630 20.15 10.15 37.08 2.10
4676 5278 9.959721 TTCTATCTTCCTAATGCACTTTAAAGT 57.040 29.630 15.22 15.22 40.60 2.66
4678 5280 9.959721 ACTTCTATCTTCCTAATGCACTTTAAA 57.040 29.630 0.00 0.00 0.00 1.52
4681 5283 8.540388 TGTACTTCTATCTTCCTAATGCACTTT 58.460 33.333 0.00 0.00 0.00 2.66
4682 5284 7.982354 GTGTACTTCTATCTTCCTAATGCACTT 59.018 37.037 0.00 0.00 0.00 3.16
4683 5285 7.343316 AGTGTACTTCTATCTTCCTAATGCACT 59.657 37.037 0.00 0.00 0.00 4.40
4684 5286 7.493367 AGTGTACTTCTATCTTCCTAATGCAC 58.507 38.462 0.00 0.00 0.00 4.57
4685 5287 7.561722 AGAGTGTACTTCTATCTTCCTAATGCA 59.438 37.037 0.00 0.00 0.00 3.96
4686 5288 7.947282 AGAGTGTACTTCTATCTTCCTAATGC 58.053 38.462 0.00 0.00 0.00 3.56
4690 5292 9.310449 ACAAAAGAGTGTACTTCTATCTTCCTA 57.690 33.333 0.00 0.00 30.16 2.94
4691 5293 8.091449 CACAAAAGAGTGTACTTCTATCTTCCT 58.909 37.037 0.00 0.00 34.83 3.36
4692 5294 7.332182 CCACAAAAGAGTGTACTTCTATCTTCC 59.668 40.741 0.00 0.00 37.82 3.46
4693 5295 8.088981 TCCACAAAAGAGTGTACTTCTATCTTC 58.911 37.037 0.00 0.00 37.82 2.87
4694 5296 7.873505 GTCCACAAAAGAGTGTACTTCTATCTT 59.126 37.037 0.00 0.00 37.82 2.40
4695 5297 7.015292 TGTCCACAAAAGAGTGTACTTCTATCT 59.985 37.037 0.00 0.00 37.82 1.98
4696 5298 7.152645 TGTCCACAAAAGAGTGTACTTCTATC 58.847 38.462 0.00 0.00 37.82 2.08
4697 5299 7.062749 TGTCCACAAAAGAGTGTACTTCTAT 57.937 36.000 0.00 0.00 37.82 1.98
4698 5300 6.474140 TGTCCACAAAAGAGTGTACTTCTA 57.526 37.500 0.00 0.00 37.82 2.10
4699 5301 5.353394 TGTCCACAAAAGAGTGTACTTCT 57.647 39.130 0.00 0.00 37.82 2.85
4700 5302 6.431198 TTTGTCCACAAAAGAGTGTACTTC 57.569 37.500 2.29 0.00 42.26 3.01
4713 5315 7.337942 ACATTTGGCTTTAAAATTTGTCCACAA 59.662 29.630 0.00 0.00 0.00 3.33
4714 5316 6.825721 ACATTTGGCTTTAAAATTTGTCCACA 59.174 30.769 0.00 0.00 0.00 4.17
4715 5317 7.258022 ACATTTGGCTTTAAAATTTGTCCAC 57.742 32.000 0.00 0.00 0.00 4.02
4716 5318 7.987458 TGTACATTTGGCTTTAAAATTTGTCCA 59.013 29.630 0.00 0.00 0.00 4.02
4717 5319 8.371770 TGTACATTTGGCTTTAAAATTTGTCC 57.628 30.769 0.00 0.00 0.00 4.02
4718 5320 9.040939 ACTGTACATTTGGCTTTAAAATTTGTC 57.959 29.630 0.00 0.00 0.00 3.18
4719 5321 8.956533 ACTGTACATTTGGCTTTAAAATTTGT 57.043 26.923 0.00 0.00 0.00 2.83
4720 5322 9.862585 GAACTGTACATTTGGCTTTAAAATTTG 57.137 29.630 2.81 0.00 0.00 2.32
4721 5323 9.606631 TGAACTGTACATTTGGCTTTAAAATTT 57.393 25.926 2.81 0.00 0.00 1.82
4722 5324 9.040939 GTGAACTGTACATTTGGCTTTAAAATT 57.959 29.630 2.81 0.00 0.00 1.82
4723 5325 7.655732 GGTGAACTGTACATTTGGCTTTAAAAT 59.344 33.333 2.81 0.00 0.00 1.82
4724 5326 6.981559 GGTGAACTGTACATTTGGCTTTAAAA 59.018 34.615 2.81 0.00 0.00 1.52
4725 5327 6.508777 GGTGAACTGTACATTTGGCTTTAAA 58.491 36.000 2.81 0.00 0.00 1.52
4726 5328 5.278071 CGGTGAACTGTACATTTGGCTTTAA 60.278 40.000 2.81 0.00 0.00 1.52
4727 5329 4.214545 CGGTGAACTGTACATTTGGCTTTA 59.785 41.667 2.81 0.00 0.00 1.85
4728 5330 3.004315 CGGTGAACTGTACATTTGGCTTT 59.996 43.478 2.81 0.00 0.00 3.51
4729 5331 2.552315 CGGTGAACTGTACATTTGGCTT 59.448 45.455 2.81 0.00 0.00 4.35
4730 5332 2.151202 CGGTGAACTGTACATTTGGCT 58.849 47.619 2.81 0.00 0.00 4.75
4731 5333 1.199097 CCGGTGAACTGTACATTTGGC 59.801 52.381 2.81 0.00 0.00 4.52
4732 5334 2.773487 TCCGGTGAACTGTACATTTGG 58.227 47.619 2.81 0.00 0.00 3.28
4733 5335 3.126858 CCATCCGGTGAACTGTACATTTG 59.873 47.826 2.81 0.00 0.00 2.32
4734 5336 3.008594 TCCATCCGGTGAACTGTACATTT 59.991 43.478 0.00 0.00 0.00 2.32
4735 5337 2.569853 TCCATCCGGTGAACTGTACATT 59.430 45.455 0.00 0.00 0.00 2.71
4736 5338 2.168521 CTCCATCCGGTGAACTGTACAT 59.831 50.000 0.00 0.00 0.00 2.29
4737 5339 1.548719 CTCCATCCGGTGAACTGTACA 59.451 52.381 0.00 0.00 0.00 2.90
4738 5340 1.134788 CCTCCATCCGGTGAACTGTAC 60.135 57.143 0.00 0.00 0.00 2.90
4739 5341 1.191535 CCTCCATCCGGTGAACTGTA 58.808 55.000 0.00 0.00 0.00 2.74
4740 5342 1.553690 CCCTCCATCCGGTGAACTGT 61.554 60.000 0.00 0.00 0.00 3.55
4741 5343 1.221840 CCCTCCATCCGGTGAACTG 59.778 63.158 0.00 0.00 0.00 3.16
4742 5344 0.978146 CTCCCTCCATCCGGTGAACT 60.978 60.000 0.00 0.00 0.00 3.01
4743 5345 1.265454 ACTCCCTCCATCCGGTGAAC 61.265 60.000 0.00 0.00 0.00 3.18
4744 5346 0.337082 TACTCCCTCCATCCGGTGAA 59.663 55.000 0.00 0.00 0.00 3.18
4745 5347 0.561184 ATACTCCCTCCATCCGGTGA 59.439 55.000 0.00 0.00 0.00 4.02
4746 5348 1.424638 AATACTCCCTCCATCCGGTG 58.575 55.000 0.00 0.00 0.00 4.94
4747 5349 2.047830 GAAATACTCCCTCCATCCGGT 58.952 52.381 0.00 0.00 0.00 5.28
4748 5350 1.348036 GGAAATACTCCCTCCATCCGG 59.652 57.143 0.00 0.00 38.44 5.14
4749 5351 2.037772 CAGGAAATACTCCCTCCATCCG 59.962 54.545 0.00 0.00 46.81 4.18
4750 5352 2.224646 GCAGGAAATACTCCCTCCATCC 60.225 54.545 0.00 0.00 46.81 3.51
4751 5353 2.708325 AGCAGGAAATACTCCCTCCATC 59.292 50.000 0.00 0.00 46.81 3.51
4752 5354 2.781667 AGCAGGAAATACTCCCTCCAT 58.218 47.619 0.00 0.00 46.81 3.41
4753 5355 2.270434 AGCAGGAAATACTCCCTCCA 57.730 50.000 0.00 0.00 46.81 3.86
4754 5356 3.577919 TCTAGCAGGAAATACTCCCTCC 58.422 50.000 0.00 0.00 46.81 4.30
4755 5357 4.651962 AGTTCTAGCAGGAAATACTCCCTC 59.348 45.833 0.00 0.00 46.81 4.30
4756 5358 4.407296 CAGTTCTAGCAGGAAATACTCCCT 59.593 45.833 0.00 0.00 46.81 4.20
4757 5359 4.162509 ACAGTTCTAGCAGGAAATACTCCC 59.837 45.833 0.00 0.00 46.81 4.30
4758 5360 5.346181 ACAGTTCTAGCAGGAAATACTCC 57.654 43.478 0.00 0.00 45.81 3.85
4759 5361 7.674471 AAAACAGTTCTAGCAGGAAATACTC 57.326 36.000 0.00 0.00 0.00 2.59
4820 5427 3.988819 ACACCATGGCATTGTGTTTAAC 58.011 40.909 26.40 0.00 40.12 2.01
5035 5643 6.018262 CGAATCGCTTGTTATTCCTAAATCCA 60.018 38.462 0.00 0.00 0.00 3.41
5136 5745 4.330074 CAGGATCATGTTACCACGAAAGAC 59.670 45.833 0.00 0.00 0.00 3.01
5210 5819 6.653740 CCTTTAGAGAAGGGTGAACGTAAAAT 59.346 38.462 0.00 0.00 33.79 1.82
5253 5862 4.593634 AGGGGGCAGTAATAAGACATCTAC 59.406 45.833 0.00 0.00 0.00 2.59
5274 5883 1.064505 CAGCACAACACAGTTGACAGG 59.935 52.381 15.99 4.61 0.00 4.00
5329 5938 8.354711 TGTCACAGAATAGTTCATCTAAGAGT 57.645 34.615 0.00 0.00 31.94 3.24
5417 6027 5.282510 AGTCGAAACGATGAGGTGATATTC 58.717 41.667 0.00 0.00 38.42 1.75
5466 6076 9.860898 AGATCAATATAAGAACAAAACTTTGCC 57.139 29.630 2.07 0.00 41.79 4.52
5488 6098 6.149807 AGGCGCTAACACTACTAGATTAGATC 59.850 42.308 7.64 0.00 0.00 2.75
5509 6119 0.879400 GGACTGCATGATGAGAGGCG 60.879 60.000 0.00 0.00 0.00 5.52
5643 6271 5.631026 CAATTTTGTGAATAGGTGGTCTCG 58.369 41.667 0.00 0.00 0.00 4.04
5704 6335 0.546122 AATAGCATCCGGTTCTGCCA 59.454 50.000 18.33 9.18 39.22 4.92
5870 6502 2.267174 AACTTGCACTCTGACAGCAT 57.733 45.000 0.00 0.00 38.19 3.79
5949 6581 2.241176 TGGATACTGGACACCCATTTCC 59.759 50.000 0.00 0.00 42.59 3.13
6048 6680 2.799126 AACATTCGGCTTGGGTGATA 57.201 45.000 0.00 0.00 0.00 2.15
6060 6692 7.441157 TGCTACCCTCAGATTTTATAACATTCG 59.559 37.037 0.00 0.00 0.00 3.34
6063 6695 8.664079 AGATGCTACCCTCAGATTTTATAACAT 58.336 33.333 0.00 0.00 0.00 2.71
6093 6732 4.901868 TGTAAGGCCGGATGGAATAATAC 58.098 43.478 5.05 0.00 37.49 1.89
6106 6748 7.758495 AGAACTGTAAATAAAATGTAAGGCCG 58.242 34.615 0.00 0.00 0.00 6.13
6136 6778 3.250040 GCGCGGAATATGGTTCTGTTATT 59.750 43.478 8.83 0.00 0.00 1.40
6159 6805 2.811873 GCCCCAGTTTGATATGATCGCT 60.812 50.000 0.00 0.00 0.00 4.93
6209 6855 4.251268 AGTGGAGCCGTATTTACAGAAAC 58.749 43.478 0.00 0.00 0.00 2.78
6234 6880 3.281727 AGAAAGGGAAAGCGCATATGA 57.718 42.857 11.47 0.00 0.00 2.15
6274 6925 2.482721 ACTAAACCAAGCAACCGAATCG 59.517 45.455 0.00 0.00 0.00 3.34
6336 6990 9.822185 AGAAATAACAGAATCAAAGCAAGTTTT 57.178 25.926 0.00 0.00 0.00 2.43
6337 6991 9.822185 AAGAAATAACAGAATCAAAGCAAGTTT 57.178 25.926 0.00 0.00 0.00 2.66
6338 6992 9.822185 AAAGAAATAACAGAATCAAAGCAAGTT 57.178 25.926 0.00 0.00 0.00 2.66
6458 7136 3.264964 TCCTCACCTTATAACCACCCAAC 59.735 47.826 0.00 0.00 0.00 3.77
6519 7197 0.390866 CACTCCGTGCTTCAGCTGAT 60.391 55.000 19.04 0.00 42.66 2.90
6635 7322 3.822636 AAGCAAAGGCAGGGCAGCT 62.823 57.895 0.00 0.00 44.61 4.24
6644 7331 4.058124 CCTCCAAACTTTAAAGCAAAGGC 58.942 43.478 15.24 0.00 46.77 4.35
6645 7332 5.049828 CACCTCCAAACTTTAAAGCAAAGG 58.950 41.667 15.24 15.47 46.77 3.11
6679 7368 1.796796 GCTGGCGATCCAAGACAAC 59.203 57.895 0.00 0.00 42.91 3.32
6700 7389 7.681125 ACGAAAAGAGACGCTACATAAATAG 57.319 36.000 0.00 0.00 0.00 1.73
6826 7533 9.315525 GGGTTAAGATTGCTTAGACTAAGTAAG 57.684 37.037 24.11 5.35 42.23 2.34
6830 7537 7.281100 CCAAGGGTTAAGATTGCTTAGACTAAG 59.719 40.741 16.58 16.58 37.84 2.18
6856 7563 3.910170 TCGTTTCACATATATAGACGCGC 59.090 43.478 5.73 0.00 0.00 6.86
6941 7648 6.175712 TGTTTTTCTTGTGGCATTTGTTTC 57.824 33.333 0.00 0.00 0.00 2.78
6963 7671 0.238289 AAATTCTGTCGCACCGCTTG 59.762 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.