AutoCloner

Multiple sequence alignment - TraesCS3B01G404100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G404100	chr3B	100.000	3282	0	0	1	3282	638377506	638380787	0.000000e+00	6061.0
1	TraesCS3B01G404100	chr6B	93.603	2298	110	16	640	2912	12465846	12468131	0.000000e+00	3395.0
2	TraesCS3B01G404100	chr6B	90.218	2157	135	29	984	3119	61199437	61201538	0.000000e+00	2745.0
3	TraesCS3B01G404100	chr2D	86.891	2731	203	73	618	3251	601106691	601104019	0.000000e+00	2916.0
4	TraesCS3B01G404100	chr2A	86.864	2573	213	68	622	3127	165244881	165247395	0.000000e+00	2763.0
5	TraesCS3B01G404100	chr2A	88.889	45	2	2	3217	3258	165247483	165247527	6.000000e-03	52.8
6	TraesCS3B01G404100	chr1B	96.606	1650	45	6	1643	3282	572991407	572989759	0.000000e+00	2726.0
7	TraesCS3B01G404100	chr1B	93.065	995	48	12	616	1601	572992377	572991395	0.000000e+00	1435.0
8	TraesCS3B01G404100	chr1B	91.929	793	41	15	2477	3253	557115414	557116199	0.000000e+00	1088.0
9	TraesCS3B01G404100	chr1B	90.476	819	56	8	2451	3251	529697963	529697149	0.000000e+00	1061.0
10	TraesCS3B01G404100	chr5D	89.818	1974	137	39	622	2554	274114126	274116076	0.000000e+00	2473.0
11	TraesCS3B01G404100	chr5D	84.785	2537	260	84	620	3081	545533142	545535627	0.000000e+00	2431.0
12	TraesCS3B01G404100	chr5D	85.160	2062	181	63	622	2583	114472345	114470309	0.000000e+00	1997.0
13	TraesCS3B01G404100	chr5D	85.590	1957	169	50	625	2490	459925475	459923541	0.000000e+00	1947.0
14	TraesCS3B01G404100	chr5D	87.366	839	59	19	2451	3258	114470414	114469592	0.000000e+00	918.0
15	TraesCS3B01G404100	chr5D	88.889	45	2	2	3217	3258	114469679	114469635	6.000000e-03	52.8
16	TraesCS3B01G404100	chr5B	89.688	1920	158	30	622	2515	708182153	708180248	0.000000e+00	2412.0
17	TraesCS3B01G404100	chr5B	93.900	623	37	1	1	622	620829448	620830070	0.000000e+00	939.0
18	TraesCS3B01G404100	chr3D	88.746	2026	141	43	623	2580	502048028	502046022	0.000000e+00	2398.0
19	TraesCS3B01G404100	chr1D	89.468	1918	138	41	622	2509	828939	830822	0.000000e+00	2364.0
20	TraesCS3B01G404100	chr6D	87.935	1981	168	40	611	2569	63805751	63807682	0.000000e+00	2268.0
21	TraesCS3B01G404100	chr6D	94.222	623	33	2	1	622	390047630	390047010	0.000000e+00	948.0
22	TraesCS3B01G404100	chr2B	82.470	2607	264	104	640	3123	748926913	748924377	0.000000e+00	2104.0
23	TraesCS3B01G404100	chr2B	87.822	969	70	20	701	1660	80103476	80102547	0.000000e+00	1092.0
24	TraesCS3B01G404100	chr2B	94.543	623	32	2	1	622	221404549	221403928	0.000000e+00	961.0
25	TraesCS3B01G404100	chr3A	88.190	1685	121	34	1155	2771	573968682	573967008	0.000000e+00	1938.0
26	TraesCS3B01G404100	chr3A	90.854	328	23	2	2798	3122	573966701	573966378	1.810000e-117	433.0
27	TraesCS3B01G404100	chr7D	92.576	1145	78	4	1977	3119	545684388	545685527	0.000000e+00	1637.0
28	TraesCS3B01G404100	chr7D	94.543	623	33	1	1	622	500644445	500645067	0.000000e+00	961.0
29	TraesCS3B01G404100	chr7D	93.900	623	37	1	1	622	582548643	582548021	0.000000e+00	939.0
30	TraesCS3B01G404100	chrUn	92.701	959	60	7	1627	2577	97175487	97176443	0.000000e+00	1375.0
31	TraesCS3B01G404100	chrUn	92.834	935	58	5	1627	2554	97255831	97256763	0.000000e+00	1347.0
32	TraesCS3B01G404100	chrUn	86.804	970	79	37	620	1551	97254874	97255832	0.000000e+00	1037.0
33	TraesCS3B01G404100	chrUn	86.467	968	82	35	622	1551	97174532	97175488	0.000000e+00	1016.0
34	TraesCS3B01G404100	chrUn	90.337	683	48	8	2451	3119	97256691	97257369	0.000000e+00	880.0
35	TraesCS3B01G404100	chr4B	89.389	933	83	11	619	1540	37138126	37139053	0.000000e+00	1160.0
36	TraesCS3B01G404100	chr4B	92.140	827	41	10	2451	3258	37141197	37142018	0.000000e+00	1146.0
37	TraesCS3B01G404100	chr4B	93.523	633	36	4	1	630	454654586	454653956	0.000000e+00	937.0
38	TraesCS3B01G404100	chr4D	93.900	623	37	1	1	622	62493371	62493993	0.000000e+00	939.0
39	TraesCS3B01G404100	chr4D	93.900	623	35	3	1	622	331622014	331621394	0.000000e+00	937.0
40	TraesCS3B01G404100	chr4D	91.783	645	43	4	2480	3121	496934157	496933520	0.000000e+00	889.0
41	TraesCS3B01G404100	chr4D	85.124	121	16	2	3131	3251	496931724	496931606	4.450000e-24	122.0
42	TraesCS3B01G404100	chr7B	93.750	624	37	2	1	622	321456873	321457496	0.000000e+00	935.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G404100	chr3B	638377506	638380787	3281	False	6061.000000	6061	100.000000	1	3282	1	chr3B.!!$F1	3281
1	TraesCS3B01G404100	chr6B	12465846	12468131	2285	False	3395.000000	3395	93.603000	640	2912	1	chr6B.!!$F1	2272
2	TraesCS3B01G404100	chr6B	61199437	61201538	2101	False	2745.000000	2745	90.218000	984	3119	1	chr6B.!!$F2	2135
3	TraesCS3B01G404100	chr2D	601104019	601106691	2672	True	2916.000000	2916	86.891000	618	3251	1	chr2D.!!$R1	2633
4	TraesCS3B01G404100	chr2A	165244881	165247527	2646	False	1407.900000	2763	87.876500	622	3258	2	chr2A.!!$F1	2636
5	TraesCS3B01G404100	chr1B	572989759	572992377	2618	True	2080.500000	2726	94.835500	616	3282	2	chr1B.!!$R2	2666
6	TraesCS3B01G404100	chr1B	557115414	557116199	785	False	1088.000000	1088	91.929000	2477	3253	1	chr1B.!!$F1	776
7	TraesCS3B01G404100	chr1B	529697149	529697963	814	True	1061.000000	1061	90.476000	2451	3251	1	chr1B.!!$R1	800
8	TraesCS3B01G404100	chr5D	274114126	274116076	1950	False	2473.000000	2473	89.818000	622	2554	1	chr5D.!!$F1	1932
9	TraesCS3B01G404100	chr5D	545533142	545535627	2485	False	2431.000000	2431	84.785000	620	3081	1	chr5D.!!$F2	2461
10	TraesCS3B01G404100	chr5D	459923541	459925475	1934	True	1947.000000	1947	85.590000	625	2490	1	chr5D.!!$R1	1865
11	TraesCS3B01G404100	chr5D	114469592	114472345	2753	True	989.266667	1997	87.138333	622	3258	3	chr5D.!!$R2	2636
12	TraesCS3B01G404100	chr5B	708180248	708182153	1905	True	2412.000000	2412	89.688000	622	2515	1	chr5B.!!$R1	1893
13	TraesCS3B01G404100	chr5B	620829448	620830070	622	False	939.000000	939	93.900000	1	622	1	chr5B.!!$F1	621
14	TraesCS3B01G404100	chr3D	502046022	502048028	2006	True	2398.000000	2398	88.746000	623	2580	1	chr3D.!!$R1	1957
15	TraesCS3B01G404100	chr1D	828939	830822	1883	False	2364.000000	2364	89.468000	622	2509	1	chr1D.!!$F1	1887
16	TraesCS3B01G404100	chr6D	63805751	63807682	1931	False	2268.000000	2268	87.935000	611	2569	1	chr6D.!!$F1	1958
17	TraesCS3B01G404100	chr6D	390047010	390047630	620	True	948.000000	948	94.222000	1	622	1	chr6D.!!$R1	621
18	TraesCS3B01G404100	chr2B	748924377	748926913	2536	True	2104.000000	2104	82.470000	640	3123	1	chr2B.!!$R3	2483
19	TraesCS3B01G404100	chr2B	80102547	80103476	929	True	1092.000000	1092	87.822000	701	1660	1	chr2B.!!$R1	959
20	TraesCS3B01G404100	chr2B	221403928	221404549	621	True	961.000000	961	94.543000	1	622	1	chr2B.!!$R2	621
21	TraesCS3B01G404100	chr3A	573966378	573968682	2304	True	1185.500000	1938	89.522000	1155	3122	2	chr3A.!!$R1	1967
22	TraesCS3B01G404100	chr7D	545684388	545685527	1139	False	1637.000000	1637	92.576000	1977	3119	1	chr7D.!!$F2	1142
23	TraesCS3B01G404100	chr7D	500644445	500645067	622	False	961.000000	961	94.543000	1	622	1	chr7D.!!$F1	621
24	TraesCS3B01G404100	chr7D	582548021	582548643	622	True	939.000000	939	93.900000	1	622	1	chr7D.!!$R1	621
25	TraesCS3B01G404100	chrUn	97174532	97176443	1911	False	1195.500000	1375	89.584000	622	2577	2	chrUn.!!$F1	1955
26	TraesCS3B01G404100	chrUn	97254874	97257369	2495	False	1088.000000	1347	89.991667	620	3119	3	chrUn.!!$F2	2499
27	TraesCS3B01G404100	chr4B	37138126	37142018	3892	False	1153.000000	1160	90.764500	619	3258	2	chr4B.!!$F1	2639
28	TraesCS3B01G404100	chr4B	454653956	454654586	630	True	937.000000	937	93.523000	1	630	1	chr4B.!!$R1	629
29	TraesCS3B01G404100	chr4D	62493371	62493993	622	False	939.000000	939	93.900000	1	622	1	chr4D.!!$F1	621
30	TraesCS3B01G404100	chr4D	331621394	331622014	620	True	937.000000	937	93.900000	1	622	1	chr4D.!!$R1	621
31	TraesCS3B01G404100	chr4D	496931606	496934157	2551	True	505.500000	889	88.453500	2480	3251	2	chr4D.!!$R2	771
32	TraesCS3B01G404100	chr7B	321456873	321457496	623	False	935.000000	935	93.750000	1	622	1	chr7B.!!$F1	621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
916	989	0.396417	CGATCACTCCCCACTCCTCT	60.396	60.0	0.00	0.0	0.00	3.69	F
1527	1750	0.915872	TCACTGGCCTCCCATGATGT	60.916	55.0	3.32	0.0	41.21	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1722	3363	0.846693	GGCCCATCAACCCACTCTAT	59.153	55.000	0.0	0.0	0.0	1.98	R
2662	4450	1.219213	TGACAGATGGGGTTGGGTTTT	59.781	47.619	0.0	0.0	0.0	2.43	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	76	7.652300	TGGATACATAGACAAAATATCGTGC	57.348	36.000	0.00	0.00	46.17	5.34
219	221	5.533903	AGACCCATTCATTAGCTTAGCATTG	59.466	40.000	7.07	0.74	0.00	2.82
332	334	3.747099	ATCTTGTGTGCTATCAAACGC	57.253	42.857	0.00	0.00	33.01	4.84
343	345	4.397730	TGCTATCAAACGCCACAACATAAT	59.602	37.500	0.00	0.00	0.00	1.28
430	432	2.961526	TAGGATTTGTCACTCCGAGC	57.038	50.000	0.00	0.00	36.62	5.03
457	460	0.644937	AGGTATCTCTGGGGCCTCTT	59.355	55.000	3.07	0.00	0.00	2.85
486	489	3.693085	ACACATCATAAGAAGCCTTGCAG	59.307	43.478	0.00	0.00	33.94	4.41
500	503	2.622942	CCTTGCAGGCAAAGTGACTAAA	59.377	45.455	8.20	0.00	29.42	1.85
528	531	8.432013	AGTTAGTTGCAGGATGATGTATTATGA	58.568	33.333	0.00	0.00	39.69	2.15
557	560	1.794714	AGAGACTGGCCGGTAATGAT	58.205	50.000	19.73	0.92	0.00	2.45
593	596	8.246871	GGTATGAAGATACTGATGATCGAATCA	58.753	37.037	0.00	0.00	38.12	2.57
774	781	2.012937	ACCGTTTTTCTGACGTGTCA	57.987	45.000	0.00	2.28	38.77	3.58
793	812	2.926250	GCCCACATATCAGGCCCA	59.074	61.111	0.00	0.00	41.00	5.36
795	814	1.227943	CCCACATATCAGGCCCACG	60.228	63.158	0.00	0.00	0.00	4.94
796	815	1.526887	CCACATATCAGGCCCACGT	59.473	57.895	0.00	0.00	0.00	4.49
847	877	3.771160	CGTTAGCCCAGCCGGTCT	61.771	66.667	1.90	0.00	0.00	3.85
910	967	1.142748	CTGCTCGATCACTCCCCAC	59.857	63.158	0.00	0.00	0.00	4.61
912	969	1.323271	TGCTCGATCACTCCCCACTC	61.323	60.000	0.00	0.00	0.00	3.51
916	989	0.396417	CGATCACTCCCCACTCCTCT	60.396	60.000	0.00	0.00	0.00	3.69
934	1007	2.243774	CTCCTGCTCCCACTCCCCTA	62.244	65.000	0.00	0.00	0.00	3.53
981	1059	1.071385	CTGTCTTTGAGGCAGGTCACT	59.929	52.381	1.69	0.00	43.91	3.41
1165	1288	7.324935	TCTGTCTTAGTTAGTGTTGTTGTTGA	58.675	34.615	0.00	0.00	0.00	3.18
1184	1307	6.950842	TGTTGACTCTGTGATATGGATCTTT	58.049	36.000	0.00	0.00	32.79	2.52
1246	1423	5.185249	TCTCTGTACAGTGTTAGGGTTCATC	59.815	44.000	21.99	0.00	0.00	2.92
1469	1670	3.181434	TGAAGGCATTGTAACAGGAAGGT	60.181	43.478	0.00	0.00	0.00	3.50
1490	1691	2.912956	TGTTTCTATGGCTTCCCAGTCT	59.087	45.455	0.00	0.00	46.24	3.24
1527	1750	0.915872	TCACTGGCCTCCCATGATGT	60.916	55.000	3.32	0.00	41.21	3.06
1722	3363	5.860941	AAATGGTGTGAATTGTGGTGTTA	57.139	34.783	0.00	0.00	0.00	2.41
1955	3617	7.558161	TGATGATGTATCCAAGATGTTTGAC	57.442	36.000	0.00	0.00	34.77	3.18
2010	3681	3.142174	CAGAAACAAGTGGAGGAGGAAC	58.858	50.000	0.00	0.00	0.00	3.62
2049	3738	2.387757	AGGAGCTAGAGGAGAAAGCTG	58.612	52.381	0.00	0.00	46.29	4.24
2063	3752	0.178981	AAGCTGTGTTGGAGGTGCAT	60.179	50.000	0.00	0.00	0.00	3.96
2123	3813	0.460811	TGCAGAGCCAAGCTGTATCG	60.461	55.000	0.00	0.00	39.88	2.92
2152	3842	2.239654	CACCAGGAAGGCTATGAAGGAA	59.760	50.000	0.00	0.00	43.14	3.36
2172	3862	4.083590	GGAAGTTCAAGTTGACAGAGATGC	60.084	45.833	4.68	0.00	0.00	3.91
2232	3922	1.074405	TGAGCTGCTGAAAGATGGGTT	59.926	47.619	7.01	0.00	34.07	4.11
2252	3942	2.949177	TGGCAGCAAGGAGAAGTTAA	57.051	45.000	0.00	0.00	0.00	2.01
2417	4118	2.512692	AGTGTTTGGCCATGCATCTA	57.487	45.000	6.09	0.00	0.00	1.98
2657	4445	0.114168	ACCAAATGCAACCCTAGGCA	59.886	50.000	2.05	0.00	45.23	4.75
2750	4579	1.395826	CCGCCACCCAAAAGAAACCA	61.396	55.000	0.00	0.00	0.00	3.67
2795	4904	1.814429	TGTCACAAAAGAGGAGGGGA	58.186	50.000	0.00	0.00	0.00	4.81
2921	5046	0.099082	GCGACTCTCCGACAAGGTAG	59.901	60.000	0.00	0.00	41.99	3.18
3057	5182	0.770557	ACTAGGGCCAAGTGGGTTCA	60.771	55.000	6.18	0.00	39.65	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	6.737254	ATCAAGTTTCCGGTTAATACAGTG	57.263	37.500	0.00	0.00	0.00	3.66
21	22	7.837202	TGTATCAAGTTTCCGGTTAATACAG	57.163	36.000	0.00	0.00	0.00	2.74
69	71	1.001248	AGGCTTACTAGGGGCACGA	59.999	57.895	0.00	0.00	0.00	4.35
74	76	4.351704	AGTCTAGTAGAGGCTTACTAGGGG	59.648	50.000	26.08	13.86	46.84	4.79
219	221	7.044706	GCAATAGCAATAAAACTGAACGATCAC	60.045	37.037	0.00	0.00	41.58	3.06
313	315	1.804151	GGCGTTTGATAGCACACAAGA	59.196	47.619	0.00	0.00	34.54	3.02
332	334	9.748708	CTTTATAATCACCCAATTATGTTGTGG	57.251	33.333	0.00	0.00	34.47	4.17
430	432	2.166829	CCCAGAGATACCTCTCCGATG	58.833	57.143	0.00	0.00	46.38	3.84
451	453	7.217200	TCTTATGATGTGTATTACCAAGAGGC	58.783	38.462	0.00	0.00	39.06	4.70
457	460	7.136822	AGGCTTCTTATGATGTGTATTACCA	57.863	36.000	0.00	0.00	0.00	3.25
486	489	6.659776	CAACTAACTCTTTAGTCACTTTGCC	58.340	40.000	0.00	0.00	46.10	4.52
500	503	4.833478	ACATCATCCTGCAACTAACTCT	57.167	40.909	0.00	0.00	0.00	3.24
528	531	3.600388	CGGCCAGTCTCTTTACTCATTT	58.400	45.455	2.24	0.00	0.00	2.32
545	548	4.935808	CCTAGTTCAATATCATTACCGGCC	59.064	45.833	0.00	0.00	0.00	6.13
580	583	0.463620	TGCCCGTGATTCGATCATCA	59.536	50.000	0.00	0.00	42.04	3.07
583	586	0.249120	ACTTGCCCGTGATTCGATCA	59.751	50.000	0.00	0.00	42.86	2.92
593	596	0.896923	TCGGTATGTTACTTGCCCGT	59.103	50.000	9.61	0.00	36.84	5.28
740	747	5.678132	AAAACGGTTAAAACGCTAGTCAT	57.322	34.783	0.00	0.00	34.00	3.06
795	814	1.960763	TCATGAGCGTGTGTGCCAC	60.961	57.895	0.00	0.00	40.89	5.01
796	815	1.960763	GTCATGAGCGTGTGTGCCA	60.961	57.895	0.00	0.00	34.65	4.92
804	823	2.433145	CTGCCACGTCATGAGCGT	60.433	61.111	14.77	14.77	43.90	5.07
811	830	1.957186	GCCGTTAACTGCCACGTCA	60.957	57.895	10.62	0.00	34.47	4.35
847	877	2.166254	GGTATTTACCTCGTTCCGACCA	59.834	50.000	0.00	0.00	43.10	4.02
910	967	1.001503	AGTGGGAGCAGGAGAGGAG	59.998	63.158	0.00	0.00	0.00	3.69
912	969	2.063378	GGAGTGGGAGCAGGAGAGG	61.063	68.421	0.00	0.00	0.00	3.69
916	989	2.253656	TAGGGGAGTGGGAGCAGGA	61.254	63.158	0.00	0.00	0.00	3.86
934	1007	0.733729	CGGCGAGCTTGTACTAGAGT	59.266	55.000	0.00	0.00	0.00	3.24
955	1033	1.301716	GCCTCAAAGACAGCGACCA	60.302	57.895	0.00	0.00	0.00	4.02
962	1040	1.131638	AGTGACCTGCCTCAAAGACA	58.868	50.000	0.00	0.00	0.00	3.41
981	1059	4.373116	GCGGCAAGGAGGTCGACA	62.373	66.667	18.91	0.00	38.35	4.35
1144	1253	7.491372	CAGAGTCAACAACAACACTAACTAAGA	59.509	37.037	0.00	0.00	0.00	2.10
1184	1307	5.231552	TCTCAATCCCCACCCTCATTAATA	58.768	41.667	0.00	0.00	0.00	0.98
1246	1423	6.796785	AATAGTGAAAATCCCCAAATCAGG	57.203	37.500	0.00	0.00	0.00	3.86
1469	1670	2.912956	AGACTGGGAAGCCATAGAAACA	59.087	45.455	0.00	0.00	0.00	2.83
1490	1691	7.217200	GCCAGTGAACATCAATATCTAACCTA	58.783	38.462	0.00	0.00	0.00	3.08
1649	1930	3.758554	TGCAAGTGGAGAAGCTAATTTCC	59.241	43.478	0.00	0.00	0.00	3.13
1722	3363	0.846693	GGCCCATCAACCCACTCTAT	59.153	55.000	0.00	0.00	0.00	1.98
1955	3617	2.768344	ACCCTACCATCCCGCCAG	60.768	66.667	0.00	0.00	0.00	4.85
2010	3681	5.179182	GCTCCTTCTTCTTCTTCTCAAGTTG	59.821	44.000	0.00	0.00	0.00	3.16
2049	3738	2.418368	TCCATATGCACCTCCAACAC	57.582	50.000	0.00	0.00	0.00	3.32
2063	3752	8.200792	TCTTTTGCAAGTTTAAGCTTTTCCATA	58.799	29.630	3.20	0.00	0.00	2.74
2123	3813	1.202818	AGCCTTCCTGGTGTTCTTGAC	60.203	52.381	0.00	0.00	38.35	3.18
2152	3842	4.314121	GAGCATCTCTGTCAACTTGAACT	58.686	43.478	0.00	0.00	0.00	3.01
2172	3862	6.413892	AGCTTTTCCTTCTCCTTCATAAGAG	58.586	40.000	0.00	0.00	0.00	2.85
2232	3922	2.949177	TAACTTCTCCTTGCTGCCAA	57.051	45.000	0.00	0.00	0.00	4.52
2252	3942	2.242882	AGGATGGCCTTGATTTGCTT	57.757	45.000	3.32	0.00	43.90	3.91
2657	4445	4.293901	ACAGATGGGGTTGGGTTTTAGTAT	59.706	41.667	0.00	0.00	0.00	2.12
2662	4450	1.219213	TGACAGATGGGGTTGGGTTTT	59.781	47.619	0.00	0.00	0.00	2.43
2750	4579	4.102598	CCCATGTCAGGATCCATCTCTAT	58.897	47.826	15.82	0.00	0.00	1.98
2795	4904	2.436173	GAGCACTAACCTCCATAGCCTT	59.564	50.000	0.00	0.00	0.00	4.35
2921	5046	5.571784	TCTTCATCATTGCATTTCTCCAC	57.428	39.130	0.00	0.00	0.00	4.02
3057	5182	6.479990	TCATCAATCATAACGCTCGAAGAAAT	59.520	34.615	0.00	0.00	34.09	2.17
3121	5298	7.554118	CACCATCTCACAAATAGTACCAGAAAT	59.446	37.037	0.00	0.00	0.00	2.17
3191	7174	5.504853	TCACTGACCCAAATGCATACATTA	58.495	37.500	0.00	0.00	45.90	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.