Multiple sequence alignment - TraesCS3B01G402900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G402900 chr3B 100.000 5506 0 0 1 5506 637072018 637066513 0.000000e+00 10168.0
1 TraesCS3B01G402900 chr3B 90.104 192 13 3 1782 1970 685078794 685078606 1.530000e-60 244.0
2 TraesCS3B01G402900 chr3D 87.190 2014 136 65 3546 5505 477885919 477883974 0.000000e+00 2178.0
3 TraesCS3B01G402900 chr3D 88.505 1157 59 38 1021 2133 477889511 477888385 0.000000e+00 1332.0
4 TraesCS3B01G402900 chr3D 87.865 445 44 4 1505 1946 16447522 16447959 1.060000e-141 514.0
5 TraesCS3B01G402900 chr3D 86.344 454 38 10 2946 3377 477887505 477887054 1.800000e-129 473.0
6 TraesCS3B01G402900 chr3D 86.585 246 33 0 2694 2939 477887784 477887539 7.030000e-69 272.0
7 TraesCS3B01G402900 chr3D 86.772 189 17 6 846 1027 477889719 477889532 2.600000e-48 204.0
8 TraesCS3B01G402900 chr3D 90.299 134 9 4 563 693 97887294 97887426 7.330000e-39 172.0
9 TraesCS3B01G402900 chr3D 90.769 130 10 2 563 692 415265631 415265504 7.330000e-39 172.0
10 TraesCS3B01G402900 chr3D 93.333 60 3 1 3477 3536 477886174 477886116 2.730000e-13 87.9
11 TraesCS3B01G402900 chr3A 89.558 1245 93 21 1058 2283 621225057 621223831 0.000000e+00 1544.0
12 TraesCS3B01G402900 chr3A 86.472 924 52 22 2510 3383 621223430 621222530 0.000000e+00 946.0
13 TraesCS3B01G402900 chr3A 91.631 466 32 7 221 686 675872318 675871860 6.020000e-179 638.0
14 TraesCS3B01G402900 chr3A 90.196 357 26 5 4070 4426 621222025 621221678 1.810000e-124 457.0
15 TraesCS3B01G402900 chr3A 86.246 349 27 9 3468 3806 621222526 621222189 5.240000e-95 359.0
16 TraesCS3B01G402900 chr3A 86.687 323 30 7 4570 4881 621221551 621221231 4.080000e-91 346.0
17 TraesCS3B01G402900 chr3A 82.232 439 31 17 5032 5459 621221113 621220711 8.840000e-88 335.0
18 TraesCS3B01G402900 chr3A 87.097 217 23 5 1 214 621225665 621225451 1.980000e-59 241.0
19 TraesCS3B01G402900 chr3A 78.932 337 48 14 704 1027 621225456 621225130 2.010000e-49 207.0
20 TraesCS3B01G402900 chr3A 95.238 126 5 1 3870 3995 621222166 621222042 1.210000e-46 198.0
21 TraesCS3B01G402900 chr3A 83.710 221 9 8 2265 2479 621223743 621223544 3.390000e-42 183.0
22 TraesCS3B01G402900 chr1D 92.424 462 33 2 221 682 257295083 257294624 0.000000e+00 658.0
23 TraesCS3B01G402900 chr1D 85.910 511 53 12 1443 1940 210229022 210228518 1.360000e-145 527.0
24 TraesCS3B01G402900 chr1D 81.395 86 16 0 3384 3469 30097081 30096996 2.750000e-08 71.3
25 TraesCS3B01G402900 chr2B 91.863 467 35 3 221 687 780815771 780815308 0.000000e+00 649.0
26 TraesCS3B01G402900 chr5D 92.667 450 30 3 221 669 116996244 116996691 0.000000e+00 645.0
27 TraesCS3B01G402900 chr5D 90.909 132 12 0 563 694 281450763 281450894 1.580000e-40 178.0
28 TraesCS3B01G402900 chr5D 88.732 71 8 0 3385 3455 546651540 546651470 2.730000e-13 87.9
29 TraesCS3B01G402900 chr5D 93.182 44 3 0 816 859 70415911 70415954 1.280000e-06 65.8
30 TraesCS3B01G402900 chr5D 100.000 28 0 0 3385 3412 443897572 443897545 1.000000e-02 52.8
31 TraesCS3B01G402900 chr5A 91.793 463 36 2 221 683 166106401 166106861 1.290000e-180 643.0
32 TraesCS3B01G402900 chr5A 89.588 461 40 5 230 690 127451639 127451187 3.700000e-161 579.0
33 TraesCS3B01G402900 chr5A 88.732 71 8 0 3399 3469 293507303 293507373 2.730000e-13 87.9
34 TraesCS3B01G402900 chr5A 97.619 42 1 0 3385 3426 703405008 703404967 7.650000e-09 73.1
35 TraesCS3B01G402900 chr5A 92.000 50 4 0 815 864 214955949 214955998 2.750000e-08 71.3
36 TraesCS3B01G402900 chr5A 100.000 33 0 0 3385 3417 480717061 480717029 1.660000e-05 62.1
37 TraesCS3B01G402900 chr2D 91.631 466 33 6 221 686 463574561 463574102 1.670000e-179 640.0
38 TraesCS3B01G402900 chr2D 89.091 55 5 1 810 864 15832100 15832047 3.560000e-07 67.6
39 TraesCS3B01G402900 chr2D 82.278 79 12 2 3390 3468 59167515 59167439 3.560000e-07 67.6
40 TraesCS3B01G402900 chr7B 91.595 464 35 3 221 682 344643955 344644416 6.020000e-179 638.0
41 TraesCS3B01G402900 chr7D 91.398 465 33 7 221 683 143013850 143014309 1.010000e-176 630.0
42 TraesCS3B01G402900 chr7D 88.315 445 42 4 1505 1946 446553336 446552899 4.890000e-145 525.0
43 TraesCS3B01G402900 chr7D 90.110 91 8 1 3385 3475 380628686 380628597 3.480000e-22 117.0
44 TraesCS3B01G402900 chr7D 94.872 39 1 1 812 849 53323236 53323198 5.960000e-05 60.2
45 TraesCS3B01G402900 chr1B 91.361 463 37 3 221 683 288497517 288497976 1.010000e-176 630.0
46 TraesCS3B01G402900 chr1B 93.300 403 14 4 1021 1411 457607751 457608152 2.860000e-162 582.0
47 TraesCS3B01G402900 chr1B 88.235 68 8 0 3402 3469 12483988 12484055 1.270000e-11 82.4
48 TraesCS3B01G402900 chr1B 89.655 58 3 2 816 870 391911510 391911567 2.750000e-08 71.3
49 TraesCS3B01G402900 chr1B 90.000 50 5 0 810 859 154145440 154145391 1.280000e-06 65.8
50 TraesCS3B01G402900 chr4D 92.750 400 28 1 295 693 486590194 486590593 1.330000e-160 577.0
51 TraesCS3B01G402900 chr4D 83.529 510 53 6 221 702 126472802 126473308 1.090000e-121 448.0
52 TraesCS3B01G402900 chr4D 88.095 84 10 0 3386 3469 506974495 506974578 3.510000e-17 100.0
53 TraesCS3B01G402900 chr4D 97.143 35 1 0 3383 3417 497514053 497514087 5.960000e-05 60.2
54 TraesCS3B01G402900 chr5B 85.323 511 56 12 1443 1940 199657460 199657964 1.370000e-140 510.0
55 TraesCS3B01G402900 chr5B 80.465 430 49 19 281 692 123926035 123926447 4.170000e-76 296.0
56 TraesCS3B01G402900 chr5B 91.837 49 4 0 816 864 491993340 491993292 9.900000e-08 69.4
57 TraesCS3B01G402900 chr5B 91.837 49 4 0 816 864 655043302 655043254 9.900000e-08 69.4
58 TraesCS3B01G402900 chr6D 84.778 519 49 18 1443 1941 472510570 472510062 1.380000e-135 494.0
59 TraesCS3B01G402900 chr6D 84.600 500 46 18 221 692 123682482 123682978 8.350000e-128 468.0
60 TraesCS3B01G402900 chr6D 100.000 28 0 0 3392 3419 267061283 267061310 1.000000e-02 52.8
61 TraesCS3B01G402900 chr2A 89.014 355 29 4 1595 1946 46334480 46334827 1.100000e-116 431.0
62 TraesCS3B01G402900 chr2A 90.104 192 13 4 1782 1970 177824141 177824329 1.530000e-60 244.0
63 TraesCS3B01G402900 chr2A 88.372 86 10 0 3384 3469 34328214 34328129 2.710000e-18 104.0
64 TraesCS3B01G402900 chr1A 89.583 192 14 3 1782 1970 505878735 505878547 7.130000e-59 239.0
65 TraesCS3B01G402900 chr1A 94.000 50 3 0 817 866 389775420 389775371 5.910000e-10 76.8
66 TraesCS3B01G402900 chr1A 81.707 82 15 0 3388 3469 30185311 30185230 9.900000e-08 69.4
67 TraesCS3B01G402900 chr7A 91.515 165 11 2 1782 1943 95923231 95923395 2.000000e-54 224.0
68 TraesCS3B01G402900 chr4A 91.515 165 11 2 1782 1943 16860778 16860614 2.000000e-54 224.0
69 TraesCS3B01G402900 chr4A 89.855 69 7 0 3401 3469 32057000 32056932 7.600000e-14 89.8
70 TraesCS3B01G402900 chr4A 93.023 43 3 0 817 859 674725919 674725961 4.600000e-06 63.9
71 TraesCS3B01G402900 chr6A 91.473 129 10 1 563 690 21551444 21551572 5.670000e-40 176.0
72 TraesCS3B01G402900 chr6A 94.118 51 2 1 815 864 323425739 323425789 5.910000e-10 76.8
73 TraesCS3B01G402900 chr4B 89.091 55 5 1 810 864 575206419 575206366 3.560000e-07 67.6
74 TraesCS3B01G402900 chr4B 89.130 46 5 0 814 859 193802858 193802813 2.140000e-04 58.4
75 TraesCS3B01G402900 chrUn 97.059 34 1 0 3385 3418 31029652 31029685 2.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G402900 chr3B 637066513 637072018 5505 True 10168.000000 10168 100.0000 1 5506 1 chr3B.!!$R1 5505
1 TraesCS3B01G402900 chr3D 477883974 477889719 5745 True 757.816667 2178 88.1215 846 5505 6 chr3D.!!$R2 4659
2 TraesCS3B01G402900 chr3A 621220711 621225665 4954 True 481.600000 1544 86.6368 1 5459 10 chr3A.!!$R2 5458
3 TraesCS3B01G402900 chr1D 210228518 210229022 504 True 527.000000 527 85.9100 1443 1940 1 chr1D.!!$R2 497
4 TraesCS3B01G402900 chr4D 126472802 126473308 506 False 448.000000 448 83.5290 221 702 1 chr4D.!!$F1 481
5 TraesCS3B01G402900 chr5B 199657460 199657964 504 False 510.000000 510 85.3230 1443 1940 1 chr5B.!!$F2 497
6 TraesCS3B01G402900 chr6D 472510062 472510570 508 True 494.000000 494 84.7780 1443 1941 1 chr6D.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 451 0.035439 ATGGTGATTGGTGGTCGGAC 60.035 55.0 0.00 0.0 0.00 4.79 F
451 453 0.036306 GGTGATTGGTGGTCGGACTT 59.964 55.0 8.23 0.0 0.00 3.01 F
474 476 0.107214 GAAGGCATGGGGATGAACGA 60.107 55.0 0.00 0.0 0.00 3.85 F
643 671 0.248539 GATCCGACGGTCTGTACTGC 60.249 60.0 14.79 0.0 35.17 4.40 F
744 772 0.759060 GAAAACCAAGTGCCCCACCT 60.759 55.0 0.00 0.0 34.49 4.00 F
1056 1140 0.826672 CGCCCTACCCTAATCCGACT 60.827 60.0 0.00 0.0 0.00 4.18 F
3019 3584 0.877071 AGTTGTGCTTGATGGCTTCG 59.123 50.0 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1401 0.105453 ACAGGGGCGGATCTAGATGT 60.105 55.000 10.74 0.00 0.00 3.06 R
1741 1870 1.005294 CGTTTTCAGCTGCATGTGCC 61.005 55.000 9.47 0.00 41.18 5.01 R
2218 2525 2.964740 TGACAACATCAGCTGCTAGTC 58.035 47.619 9.47 12.36 31.91 2.59 R
2508 2980 0.538118 GCACCATGCCACCATCAAAT 59.462 50.000 0.00 0.00 37.42 2.32 R
2702 3240 3.889815 TGAAATGGAATAGGAGCACTGG 58.110 45.455 0.00 0.00 0.00 4.00 R
3035 3600 0.756903 TATCCTAACGGGCTGGCTTC 59.243 55.000 0.00 0.00 34.39 3.86 R
4917 6545 0.039618 CTTGTGGCTGTGGGGGTAAT 59.960 55.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.372501 ACCAACTGCCCACCTTCTAT 58.627 50.000 0.00 0.00 0.00 1.98
22 23 1.710809 ACCAACTGCCCACCTTCTATT 59.289 47.619 0.00 0.00 0.00 1.73
24 25 3.332485 ACCAACTGCCCACCTTCTATTTA 59.668 43.478 0.00 0.00 0.00 1.40
30 31 6.773638 ACTGCCCACCTTCTATTTATCTATG 58.226 40.000 0.00 0.00 0.00 2.23
33 34 7.811282 TGCCCACCTTCTATTTATCTATGAAA 58.189 34.615 0.00 0.00 0.00 2.69
163 165 0.894184 TGTCGTCCGCTTCTCCTTCT 60.894 55.000 0.00 0.00 0.00 2.85
167 169 1.351153 GTCCGCTTCTCCTTCTTTCG 58.649 55.000 0.00 0.00 0.00 3.46
172 174 1.997669 CTTCTCCTTCTTTCGACCCG 58.002 55.000 0.00 0.00 0.00 5.28
173 175 1.544691 CTTCTCCTTCTTTCGACCCGA 59.455 52.381 0.00 0.00 0.00 5.14
190 192 4.753186 ACCCGACATATATTCTCCTCCTT 58.247 43.478 0.00 0.00 0.00 3.36
198 200 9.088987 GACATATATTCTCCTCCTTTCTCTCTT 57.911 37.037 0.00 0.00 0.00 2.85
199 201 9.088987 ACATATATTCTCCTCCTTTCTCTCTTC 57.911 37.037 0.00 0.00 0.00 2.87
200 202 9.087871 CATATATTCTCCTCCTTTCTCTCTTCA 57.912 37.037 0.00 0.00 0.00 3.02
201 203 9.842196 ATATATTCTCCTCCTTTCTCTCTTCAT 57.158 33.333 0.00 0.00 0.00 2.57
204 206 7.986553 TTCTCCTCCTTTCTCTCTTCATATT 57.013 36.000 0.00 0.00 0.00 1.28
205 207 7.986553 TCTCCTCCTTTCTCTCTTCATATTT 57.013 36.000 0.00 0.00 0.00 1.40
207 209 9.494055 TCTCCTCCTTTCTCTCTTCATATTTTA 57.506 33.333 0.00 0.00 0.00 1.52
229 231 9.747898 TTTTATCTTTTAATCCCACTAGCAAGA 57.252 29.630 0.00 0.00 0.00 3.02
233 235 2.355010 AATCCCACTAGCAAGATGCC 57.645 50.000 0.00 0.00 46.52 4.40
254 256 1.135344 CATGCATTGCACGGAACATCA 60.135 47.619 14.66 0.00 43.04 3.07
292 294 4.681744 ACAAAACGCTTGTTGTGATTGAT 58.318 34.783 0.00 0.00 42.43 2.57
421 423 2.890945 GAGAGATAAGGTGAGGAGGAGC 59.109 54.545 0.00 0.00 0.00 4.70
437 439 4.856801 GCGGGGTGCGATGGTGAT 62.857 66.667 0.00 0.00 0.00 3.06
449 451 0.035439 ATGGTGATTGGTGGTCGGAC 60.035 55.000 0.00 0.00 0.00 4.79
451 453 0.036306 GGTGATTGGTGGTCGGACTT 59.964 55.000 8.23 0.00 0.00 3.01
452 454 1.276989 GGTGATTGGTGGTCGGACTTA 59.723 52.381 8.23 0.00 0.00 2.24
456 458 1.180456 TTGGTGGTCGGACTTAGCGA 61.180 55.000 8.23 4.79 0.00 4.93
462 464 0.179108 GTCGGACTTAGCGAAGGCAT 60.179 55.000 14.82 0.00 43.28 4.40
470 472 1.053835 TAGCGAAGGCATGGGGATGA 61.054 55.000 0.00 0.00 43.41 2.92
474 476 0.107214 GAAGGCATGGGGATGAACGA 60.107 55.000 0.00 0.00 0.00 3.85
483 485 3.115892 GATGAACGACGCCGGCAA 61.116 61.111 28.98 2.18 40.78 4.52
511 513 2.022195 CATGCCAGATTGTTCCAGAGG 58.978 52.381 0.00 0.00 0.00 3.69
520 522 3.312736 TTGTTCCAGAGGCTTCCTTTT 57.687 42.857 0.00 0.00 31.76 2.27
521 523 2.863809 TGTTCCAGAGGCTTCCTTTTC 58.136 47.619 0.00 0.00 31.76 2.29
527 529 6.636454 TCCAGAGGCTTCCTTTTCTAATTA 57.364 37.500 0.00 0.00 31.76 1.40
531 533 7.106239 CAGAGGCTTCCTTTTCTAATTACTCA 58.894 38.462 0.00 0.00 31.76 3.41
532 534 7.607991 CAGAGGCTTCCTTTTCTAATTACTCAA 59.392 37.037 0.00 0.00 31.76 3.02
536 538 8.523658 GGCTTCCTTTTCTAATTACTCAACAAT 58.476 33.333 0.00 0.00 0.00 2.71
580 608 1.797211 CGAGAGAGGTGCGGGTATCC 61.797 65.000 0.00 0.00 0.00 2.59
586 614 0.679960 AGGTGCGGGTATCCTTTTGC 60.680 55.000 0.00 0.00 0.00 3.68
628 656 7.067615 TGCTTTCTATCCGTCAGATATAGATCC 59.932 40.741 0.00 0.00 36.84 3.36
637 665 4.093703 GTCAGATATAGATCCGACGGTCTG 59.906 50.000 21.73 19.81 31.47 3.51
642 670 1.380524 AGATCCGACGGTCTGTACTG 58.619 55.000 14.79 0.00 38.04 2.74
643 671 0.248539 GATCCGACGGTCTGTACTGC 60.249 60.000 14.79 0.00 35.17 4.40
674 702 3.149196 GACACACCATCATCACCAACTT 58.851 45.455 0.00 0.00 0.00 2.66
676 704 3.148412 CACACCATCATCACCAACTTGA 58.852 45.455 0.00 0.00 0.00 3.02
741 769 1.398958 GCTGAAAACCAAGTGCCCCA 61.399 55.000 0.00 0.00 0.00 4.96
744 772 0.759060 GAAAACCAAGTGCCCCACCT 60.759 55.000 0.00 0.00 34.49 4.00
753 781 4.064388 CAAGTGCCCCACCTTTTTATTTG 58.936 43.478 0.00 0.00 34.49 2.32
778 806 9.547753 TGTTTTCCATTTTTCGGATTTATTCAA 57.452 25.926 0.00 0.00 30.99 2.69
811 839 7.392953 TGGACAAATGAATCACATGCTAACTTA 59.607 33.333 0.00 0.00 39.39 2.24
813 841 8.970691 ACAAATGAATCACATGCTAACTTAAC 57.029 30.769 0.00 0.00 39.39 2.01
823 851 9.542462 TCACATGCTAACTTAACATAATACTCC 57.458 33.333 0.00 0.00 0.00 3.85
826 854 9.561069 CATGCTAACTTAACATAATACTCCCTT 57.439 33.333 0.00 0.00 0.00 3.95
828 856 9.391006 TGCTAACTTAACATAATACTCCCTTTG 57.609 33.333 0.00 0.00 0.00 2.77
917 957 7.962995 AAAAAGGAAAAAGGCCCAATTAAAA 57.037 28.000 0.00 0.00 0.00 1.52
918 958 7.962995 AAAAGGAAAAAGGCCCAATTAAAAA 57.037 28.000 0.00 0.00 0.00 1.94
945 997 7.284919 TGGAAAAAGAGAGGTGGTAAATTTC 57.715 36.000 0.00 0.00 0.00 2.17
946 998 6.266786 TGGAAAAAGAGAGGTGGTAAATTTCC 59.733 38.462 0.00 0.00 42.14 3.13
951 1003 7.526142 AAGAGAGGTGGTAAATTTCCTTTTC 57.474 36.000 0.00 0.00 0.00 2.29
956 1008 7.015292 AGAGGTGGTAAATTTCCTTTTCCTTTC 59.985 37.037 0.00 0.00 35.79 2.62
1056 1140 0.826672 CGCCCTACCCTAATCCGACT 60.827 60.000 0.00 0.00 0.00 4.18
1060 1155 1.614413 CCTACCCTAATCCGACTCAGC 59.386 57.143 0.00 0.00 0.00 4.26
1355 1467 5.100259 TGTTTACTGCTAGTATCGCTTGAC 58.900 41.667 0.00 0.00 29.64 3.18
1416 1530 1.143305 CAGTTCGTCAGTTCCTGCTG 58.857 55.000 0.00 0.00 37.81 4.41
1419 1533 1.261619 GTTCGTCAGTTCCTGCTGTTG 59.738 52.381 0.00 0.00 37.70 3.33
1424 1538 3.311322 CGTCAGTTCCTGCTGTTGTTTTA 59.689 43.478 0.00 0.00 37.70 1.52
1425 1539 4.201871 CGTCAGTTCCTGCTGTTGTTTTAA 60.202 41.667 0.00 0.00 37.70 1.52
1426 1540 5.646606 GTCAGTTCCTGCTGTTGTTTTAAA 58.353 37.500 0.00 0.00 37.70 1.52
1427 1541 6.096695 GTCAGTTCCTGCTGTTGTTTTAAAA 58.903 36.000 0.00 0.00 37.70 1.52
1540 1654 1.681229 TTCCAAACCAGCCCTAGGAT 58.319 50.000 11.48 0.00 0.00 3.24
1656 1776 3.950395 GCCAAAATGAGAGAAGGTATGCT 59.050 43.478 0.00 0.00 0.00 3.79
1707 1836 4.761739 TGACCTTTTCAGATGTCCATTGAC 59.238 41.667 0.00 0.00 42.12 3.18
2022 2173 8.785329 AGAGTGGTATTCTTCATTTCTTCTTC 57.215 34.615 0.00 0.00 0.00 2.87
2023 2174 8.601546 AGAGTGGTATTCTTCATTTCTTCTTCT 58.398 33.333 0.00 0.00 0.00 2.85
2035 2186 8.138928 TCATTTCTTCTTCTCACCTTAGATGA 57.861 34.615 0.00 0.00 0.00 2.92
2040 2191 7.780064 TCTTCTTCTCACCTTAGATGATCTTG 58.220 38.462 0.00 0.00 31.82 3.02
2080 2231 7.801547 GTAGCATACAAAGTTAGTTCACGTA 57.198 36.000 0.00 0.00 42.43 3.57
2096 2247 7.265673 AGTTCACGTATATGAATAAGCACACT 58.734 34.615 0.00 0.00 40.60 3.55
2115 2266 6.868864 GCACACTATCAAGTTTTCACTCTCTA 59.131 38.462 0.00 0.00 31.97 2.43
2165 2471 8.709308 AGTAACTGCTCCAATAGTATTTCTCAT 58.291 33.333 0.00 0.00 0.00 2.90
2240 2547 3.937706 GACTAGCAGCTGATGTTGTCATT 59.062 43.478 20.43 0.00 35.97 2.57
2308 2720 6.146347 GTGTTCTGGACATCTGAAGTAAAGAC 59.854 42.308 0.00 0.00 41.10 3.01
2312 2724 7.831753 TCTGGACATCTGAAGTAAAGACTTAG 58.168 38.462 0.00 0.00 46.23 2.18
2313 2725 6.398918 TGGACATCTGAAGTAAAGACTTAGC 58.601 40.000 0.00 0.00 46.23 3.09
2314 2726 6.014584 TGGACATCTGAAGTAAAGACTTAGCA 60.015 38.462 0.00 0.00 46.23 3.49
2315 2727 7.044798 GGACATCTGAAGTAAAGACTTAGCAT 58.955 38.462 0.00 0.00 46.23 3.79
2316 2728 7.550906 GGACATCTGAAGTAAAGACTTAGCATT 59.449 37.037 0.00 0.00 46.23 3.56
2317 2729 8.261492 ACATCTGAAGTAAAGACTTAGCATTG 57.739 34.615 0.00 0.00 46.23 2.82
2318 2730 8.097038 ACATCTGAAGTAAAGACTTAGCATTGA 58.903 33.333 0.00 0.00 46.23 2.57
2319 2731 9.107177 CATCTGAAGTAAAGACTTAGCATTGAT 57.893 33.333 0.00 0.00 46.23 2.57
2320 2732 9.678260 ATCTGAAGTAAAGACTTAGCATTGATT 57.322 29.630 0.00 0.00 46.23 2.57
2323 2735 9.944376 TGAAGTAAAGACTTAGCATTGATTAGT 57.056 29.630 0.00 0.00 46.23 2.24
2329 2741 8.934507 AAGACTTAGCATTGATTAGTAGTGAC 57.065 34.615 0.00 0.00 0.00 3.67
2330 2742 8.299990 AGACTTAGCATTGATTAGTAGTGACT 57.700 34.615 0.00 0.00 39.92 3.41
2331 2743 8.754080 AGACTTAGCATTGATTAGTAGTGACTT 58.246 33.333 0.00 0.00 37.10 3.01
2334 2746 8.873215 TTAGCATTGATTAGTAGTGACTTAGC 57.127 34.615 0.00 0.00 37.10 3.09
2406 2835 4.578516 TCTGGTTAAAACTGTGACATGTGG 59.421 41.667 1.15 0.00 0.00 4.17
2417 2846 4.459330 TGTGACATGTGGACTTCATTCAA 58.541 39.130 1.15 0.00 0.00 2.69
2459 2895 5.661056 TGTCAGTCTTTACCTCGATGAAT 57.339 39.130 0.00 0.00 0.00 2.57
2526 3045 3.195182 TGTAATTTGATGGTGGCATGGTG 59.805 43.478 0.00 0.00 0.00 4.17
2800 3338 4.173244 TCCACCCTTCCTACCAATATCCTA 59.827 45.833 0.00 0.00 0.00 2.94
2813 3351 7.040473 ACCAATATCCTACGAAGTCTTACAG 57.960 40.000 0.00 0.00 43.93 2.74
2822 3360 3.243336 CGAAGTCTTACAGTACCAGCAC 58.757 50.000 0.00 0.00 0.00 4.40
2836 3374 2.930562 GCACCCCAGACTCCAGGT 60.931 66.667 0.00 0.00 0.00 4.00
2841 3379 1.196012 CCCCAGACTCCAGGTTACTC 58.804 60.000 0.00 0.00 0.00 2.59
2862 3400 2.164219 CACGATAACTTTGCCAAGCCAT 59.836 45.455 0.00 0.00 32.57 4.40
2878 3416 3.843422 AGCCATACTCTAGCACTCTGAT 58.157 45.455 0.00 0.00 0.00 2.90
2880 3418 3.826157 GCCATACTCTAGCACTCTGATCT 59.174 47.826 0.00 0.00 0.00 2.75
2889 3427 4.899352 AGCACTCTGATCTTAACAAGGT 57.101 40.909 0.00 0.00 0.00 3.50
2909 3447 5.934781 AGGTCAAATTCAGAAACAGAGACT 58.065 37.500 0.00 0.00 0.00 3.24
2910 3448 7.067496 AGGTCAAATTCAGAAACAGAGACTA 57.933 36.000 0.00 0.00 0.00 2.59
2915 3453 7.498900 TCAAATTCAGAAACAGAGACTAGCAAA 59.501 33.333 0.00 0.00 0.00 3.68
2916 3454 6.793492 ATTCAGAAACAGAGACTAGCAAAC 57.207 37.500 0.00 0.00 0.00 2.93
2939 3477 4.503714 AACTCCAGTTTCCTGTTCTGAA 57.496 40.909 0.00 0.00 36.95 3.02
2940 3478 4.503714 ACTCCAGTTTCCTGTTCTGAAA 57.496 40.909 0.00 0.00 36.95 2.69
2941 3479 4.855340 ACTCCAGTTTCCTGTTCTGAAAA 58.145 39.130 0.00 0.00 36.95 2.29
2942 3480 4.640647 ACTCCAGTTTCCTGTTCTGAAAAC 59.359 41.667 0.00 0.00 36.95 2.43
2944 3482 5.261216 TCCAGTTTCCTGTTCTGAAAACTT 58.739 37.500 2.52 0.00 36.95 2.66
2959 3524 6.305272 TGAAAACTTCAGATGCCTCTATCT 57.695 37.500 0.00 0.00 37.90 1.98
2964 3529 4.766891 ACTTCAGATGCCTCTATCTCTAGC 59.233 45.833 0.00 0.00 35.28 3.42
2968 3533 4.697828 CAGATGCCTCTATCTCTAGCGTTA 59.302 45.833 0.00 0.00 35.28 3.18
3019 3584 0.877071 AGTTGTGCTTGATGGCTTCG 59.123 50.000 0.00 0.00 0.00 3.79
3035 3600 2.726241 GCTTCGCAAGTTTAGCTTTTGG 59.274 45.455 0.00 0.00 34.69 3.28
3085 3650 7.761409 TGTGAAATCTGAAACATACATTAGCC 58.239 34.615 0.00 0.00 0.00 3.93
3086 3651 7.148086 TGTGAAATCTGAAACATACATTAGCCC 60.148 37.037 0.00 0.00 0.00 5.19
3087 3652 7.067494 GTGAAATCTGAAACATACATTAGCCCT 59.933 37.037 0.00 0.00 0.00 5.19
3089 3654 5.692115 TCTGAAACATACATTAGCCCTGA 57.308 39.130 0.00 0.00 0.00 3.86
3090 3655 6.061022 TCTGAAACATACATTAGCCCTGAA 57.939 37.500 0.00 0.00 0.00 3.02
3124 3693 0.474184 AACAGTCTGTTGTCCCTGGG 59.526 55.000 17.49 6.33 39.45 4.45
3152 3721 1.412079 TGGAGCAAAGCAAACCACAT 58.588 45.000 0.00 0.00 0.00 3.21
3153 3726 1.068895 TGGAGCAAAGCAAACCACATG 59.931 47.619 0.00 0.00 0.00 3.21
3180 3753 1.709147 GCTGCCGCCATGAACTGTAG 61.709 60.000 0.00 0.00 0.00 2.74
3181 3754 1.078497 TGCCGCCATGAACTGTAGG 60.078 57.895 0.00 0.00 0.00 3.18
3322 3912 2.512692 TCTATTGCACTGCCACCAAT 57.487 45.000 0.00 0.00 34.01 3.16
3383 3973 7.591006 TCCTAAATGCTAACTACAAAAGTCG 57.409 36.000 0.00 0.00 37.50 4.18
3385 3975 8.306038 TCCTAAATGCTAACTACAAAAGTCGTA 58.694 33.333 0.00 0.00 37.50 3.43
3386 3976 8.378421 CCTAAATGCTAACTACAAAAGTCGTAC 58.622 37.037 0.00 0.00 37.50 3.67
3387 3977 7.958053 AAATGCTAACTACAAAAGTCGTACT 57.042 32.000 0.00 0.00 37.50 2.73
3389 3979 8.458212 AATGCTAACTACAAAAGTCGTACTAC 57.542 34.615 0.00 0.00 37.50 2.73
3390 3980 6.381801 TGCTAACTACAAAAGTCGTACTACC 58.618 40.000 0.00 0.00 37.50 3.18
3392 3982 6.744993 GCTAACTACAAAAGTCGTACTACCTC 59.255 42.308 0.00 0.00 37.50 3.85
3393 3983 5.635417 ACTACAAAAGTCGTACTACCTCC 57.365 43.478 0.00 0.00 30.33 4.30
3394 3984 3.565905 ACAAAAGTCGTACTACCTCCG 57.434 47.619 0.00 0.00 0.00 4.63
3396 3986 3.057946 ACAAAAGTCGTACTACCTCCGTC 60.058 47.826 0.00 0.00 0.00 4.79
3397 3987 2.777832 AAGTCGTACTACCTCCGTCT 57.222 50.000 0.00 0.00 0.00 4.18
3398 3988 2.307934 AGTCGTACTACCTCCGTCTC 57.692 55.000 0.00 0.00 0.00 3.36
3399 3989 1.552337 AGTCGTACTACCTCCGTCTCA 59.448 52.381 0.00 0.00 0.00 3.27
3400 3990 2.027745 AGTCGTACTACCTCCGTCTCAA 60.028 50.000 0.00 0.00 0.00 3.02
3402 3992 3.189287 GTCGTACTACCTCCGTCTCAAAA 59.811 47.826 0.00 0.00 0.00 2.44
3404 3994 5.065218 GTCGTACTACCTCCGTCTCAAAATA 59.935 44.000 0.00 0.00 0.00 1.40
3405 3995 5.824624 TCGTACTACCTCCGTCTCAAAATAT 59.175 40.000 0.00 0.00 0.00 1.28
3406 3996 6.992123 TCGTACTACCTCCGTCTCAAAATATA 59.008 38.462 0.00 0.00 0.00 0.86
3408 4081 7.802251 CGTACTACCTCCGTCTCAAAATATAAG 59.198 40.741 0.00 0.00 0.00 1.73
3413 4086 7.565680 ACCTCCGTCTCAAAATATAAGATGTT 58.434 34.615 0.00 0.00 0.00 2.71
3415 4088 8.893727 CCTCCGTCTCAAAATATAAGATGTTTT 58.106 33.333 0.00 0.00 34.50 2.43
3456 4129 9.705290 AACTGCAAAAACTACTTATATTTTGGG 57.295 29.630 10.66 0.00 41.02 4.12
3457 4130 9.084533 ACTGCAAAAACTACTTATATTTTGGGA 57.915 29.630 10.66 0.00 41.02 4.37
3458 4131 9.353999 CTGCAAAAACTACTTATATTTTGGGAC 57.646 33.333 10.66 0.00 41.02 4.46
3459 4132 8.024285 TGCAAAAACTACTTATATTTTGGGACG 58.976 33.333 10.66 0.00 41.02 4.79
3461 4134 8.732531 CAAAAACTACTTATATTTTGGGACGGA 58.267 33.333 0.00 0.00 38.47 4.69
3462 4135 8.502105 AAAACTACTTATATTTTGGGACGGAG 57.498 34.615 0.00 0.00 0.00 4.63
3463 4136 6.170846 ACTACTTATATTTTGGGACGGAGG 57.829 41.667 0.00 0.00 0.00 4.30
3488 4858 6.361768 AGTAACTTTGAGAGGGACCTTAAG 57.638 41.667 0.00 0.00 0.00 1.85
3516 4886 5.819901 CCAAAATCTTTTGTAAGGCCAAACA 59.180 36.000 5.01 5.67 44.52 2.83
3572 5129 1.004044 CACAGAGCCACAAATCCTCCT 59.996 52.381 0.00 0.00 0.00 3.69
3616 5181 2.092914 CCCACCTCTTCCATACAGAACC 60.093 54.545 0.00 0.00 0.00 3.62
3704 5271 3.381272 ACATTGTGCTAAAGTGCAGTTGT 59.619 39.130 7.73 1.11 44.20 3.32
3705 5272 3.419264 TTGTGCTAAAGTGCAGTTGTG 57.581 42.857 7.73 5.05 44.20 3.33
3788 5355 7.201902 GCCATTTAATGATTAGGTGACCATGAA 60.202 37.037 3.63 0.00 0.00 2.57
3797 5364 8.739039 TGATTAGGTGACCATGAAAGTTAAATG 58.261 33.333 3.63 0.00 0.00 2.32
3798 5365 8.650143 ATTAGGTGACCATGAAAGTTAAATGT 57.350 30.769 3.63 0.00 0.00 2.71
3808 5375 8.966868 CCATGAAAGTTAAATGTATACAACCCT 58.033 33.333 10.14 0.00 0.00 4.34
3811 5378 7.334921 TGAAAGTTAAATGTATACAACCCTCGG 59.665 37.037 10.14 0.00 0.00 4.63
3824 5391 3.966543 CTCGGCCCCTTGGTTGGT 61.967 66.667 0.00 0.00 0.00 3.67
3835 5402 5.243060 GCCCCTTGGTTGGTTAACATATATC 59.757 44.000 8.10 0.00 38.58 1.63
3847 5414 7.147284 TGGTTAACATATATCCCTGCCAAGTAA 60.147 37.037 8.10 0.00 0.00 2.24
3868 5435 6.710744 AGTAACAATGATATTTTCTAGCCCCG 59.289 38.462 0.00 0.00 0.00 5.73
3996 5563 7.445402 TCTTCATAGTTTTCCTTCTGTTCCTTG 59.555 37.037 0.00 0.00 0.00 3.61
4019 5586 2.029560 AGTTACTTCCTCCGTTCGGAAC 60.030 50.000 14.79 10.83 35.70 3.62
4027 5594 2.165845 CCTCCGTTCGGAACTAAGTGAT 59.834 50.000 17.94 0.00 33.41 3.06
4029 5596 2.559668 TCCGTTCGGAACTAAGTGATGT 59.440 45.455 17.94 0.00 0.00 3.06
4035 5602 5.917541 TCGGAACTAAGTGATGTTGTTTC 57.082 39.130 0.00 0.00 0.00 2.78
4098 5665 7.766219 TCTTTGTTTAGTTACTATGATCCGC 57.234 36.000 0.00 0.00 0.00 5.54
4110 5681 4.588951 ACTATGATCCGCCAGATGTTCTTA 59.411 41.667 0.00 0.00 34.42 2.10
4111 5682 3.179443 TGATCCGCCAGATGTTCTTAC 57.821 47.619 0.00 0.00 34.42 2.34
4112 5683 2.766263 TGATCCGCCAGATGTTCTTACT 59.234 45.455 0.00 0.00 34.42 2.24
4113 5684 2.961526 TCCGCCAGATGTTCTTACTC 57.038 50.000 0.00 0.00 0.00 2.59
4137 5708 2.490115 TCGTTGCTTCCTTTTTGTGTGT 59.510 40.909 0.00 0.00 0.00 3.72
4138 5709 3.690139 TCGTTGCTTCCTTTTTGTGTGTA 59.310 39.130 0.00 0.00 0.00 2.90
4253 5824 0.690411 ATCTGAGGGAGGAGCAGGTG 60.690 60.000 0.00 0.00 0.00 4.00
4333 5904 4.801147 ATGTGTATTCATCATGTGTCGC 57.199 40.909 0.00 0.00 0.00 5.19
4346 5917 1.449423 TGTCGCCGAATCCATGGTG 60.449 57.895 12.58 0.30 37.09 4.17
4347 5918 2.180204 GTCGCCGAATCCATGGTGG 61.180 63.158 12.58 10.82 39.43 4.61
4348 5919 3.585990 CGCCGAATCCATGGTGGC 61.586 66.667 21.98 21.98 42.29 5.01
4349 5920 2.124151 GCCGAATCCATGGTGGCT 60.124 61.111 23.54 5.38 42.44 4.75
4350 5921 2.189499 GCCGAATCCATGGTGGCTC 61.189 63.158 23.54 11.77 42.44 4.70
4351 5922 1.528824 CCGAATCCATGGTGGCTCT 59.471 57.895 12.58 0.00 37.47 4.09
4352 5923 0.758734 CCGAATCCATGGTGGCTCTA 59.241 55.000 12.58 0.00 37.47 2.43
4353 5924 1.140852 CCGAATCCATGGTGGCTCTAA 59.859 52.381 12.58 0.00 37.47 2.10
4355 5926 2.225467 GAATCCATGGTGGCTCTAAGC 58.775 52.381 12.58 0.00 41.46 3.09
4426 5997 4.021807 TCGTCCTGTAATGTAAGCACTTGA 60.022 41.667 0.00 0.00 0.00 3.02
4428 5999 5.238583 GTCCTGTAATGTAAGCACTTGACT 58.761 41.667 0.00 0.00 0.00 3.41
4429 6000 5.701290 GTCCTGTAATGTAAGCACTTGACTT 59.299 40.000 0.00 0.00 0.00 3.01
4430 6001 5.700832 TCCTGTAATGTAAGCACTTGACTTG 59.299 40.000 0.00 0.00 0.00 3.16
4431 6002 5.106555 CCTGTAATGTAAGCACTTGACTTGG 60.107 44.000 0.00 0.00 0.00 3.61
4432 6003 3.923017 AATGTAAGCACTTGACTTGGC 57.077 42.857 0.00 0.00 0.00 4.52
4433 6004 2.340210 TGTAAGCACTTGACTTGGCA 57.660 45.000 0.00 0.00 0.00 4.92
4434 6005 2.221169 TGTAAGCACTTGACTTGGCAG 58.779 47.619 0.00 0.00 0.00 4.85
4435 6006 2.158827 TGTAAGCACTTGACTTGGCAGA 60.159 45.455 0.00 0.00 0.00 4.26
4436 6007 2.283145 AAGCACTTGACTTGGCAGAT 57.717 45.000 0.00 0.00 0.00 2.90
4437 6008 3.423539 AAGCACTTGACTTGGCAGATA 57.576 42.857 0.00 0.00 0.00 1.98
4438 6009 2.704572 AGCACTTGACTTGGCAGATAC 58.295 47.619 0.00 0.00 0.00 2.24
4439 6010 2.304180 AGCACTTGACTTGGCAGATACT 59.696 45.455 0.00 0.00 0.00 2.12
4440 6011 2.675348 GCACTTGACTTGGCAGATACTC 59.325 50.000 0.00 0.00 0.00 2.59
4441 6012 3.265791 CACTTGACTTGGCAGATACTCC 58.734 50.000 0.00 0.00 0.00 3.85
4442 6013 3.055530 CACTTGACTTGGCAGATACTCCT 60.056 47.826 0.00 0.00 0.00 3.69
4443 6014 4.160439 CACTTGACTTGGCAGATACTCCTA 59.840 45.833 0.00 0.00 0.00 2.94
4444 6015 4.160626 ACTTGACTTGGCAGATACTCCTAC 59.839 45.833 0.00 0.00 0.00 3.18
4445 6016 3.031736 TGACTTGGCAGATACTCCTACC 58.968 50.000 0.00 0.00 0.00 3.18
4446 6017 3.301274 GACTTGGCAGATACTCCTACCT 58.699 50.000 0.00 0.00 0.00 3.08
4447 6018 3.034635 ACTTGGCAGATACTCCTACCTG 58.965 50.000 0.00 0.00 0.00 4.00
4448 6019 3.300388 CTTGGCAGATACTCCTACCTGA 58.700 50.000 0.00 0.00 0.00 3.86
4451 6022 3.117131 TGGCAGATACTCCTACCTGATGA 60.117 47.826 0.00 0.00 0.00 2.92
4457 6028 5.538053 AGATACTCCTACCTGATGATGTGTG 59.462 44.000 0.00 0.00 0.00 3.82
4458 6029 2.169352 ACTCCTACCTGATGATGTGTGC 59.831 50.000 0.00 0.00 0.00 4.57
4461 6041 1.929169 CTACCTGATGATGTGTGCGTG 59.071 52.381 0.00 0.00 0.00 5.34
4465 6045 0.238025 TGATGATGTGTGCGTGCAAC 59.762 50.000 0.00 0.00 0.00 4.17
4467 6047 0.890542 ATGATGTGTGCGTGCAACCT 60.891 50.000 0.00 0.00 0.00 3.50
4468 6048 1.207593 GATGTGTGCGTGCAACCTC 59.792 57.895 0.00 0.00 0.00 3.85
4470 6050 0.819259 ATGTGTGCGTGCAACCTCTT 60.819 50.000 0.00 0.00 0.00 2.85
4480 6060 3.125316 CGTGCAACCTCTTATCCAGTTTC 59.875 47.826 0.00 0.00 0.00 2.78
4483 6063 3.270877 CAACCTCTTATCCAGTTTCCCG 58.729 50.000 0.00 0.00 0.00 5.14
4489 6070 4.030913 TCTTATCCAGTTTCCCGACAGAT 58.969 43.478 0.00 0.00 0.00 2.90
4503 6084 3.181517 CCGACAGATACACACATTTGCTG 60.182 47.826 0.00 0.00 0.00 4.41
4510 6091 0.810648 CACACATTTGCTGCCCGTAT 59.189 50.000 0.00 0.00 0.00 3.06
4513 6094 0.964860 ACATTTGCTGCCCGTATGCA 60.965 50.000 0.00 0.00 39.37 3.96
4514 6095 0.386476 CATTTGCTGCCCGTATGCAT 59.614 50.000 3.79 3.79 41.16 3.96
4535 6119 5.241064 GCATTTGCTTCATCATCATCCTACT 59.759 40.000 0.00 0.00 38.21 2.57
4540 6124 5.604231 TGCTTCATCATCATCCTACTAAGGT 59.396 40.000 0.00 0.00 44.09 3.50
4553 6137 2.755650 ACTAAGGTCTGAAGTTGTGCG 58.244 47.619 0.00 0.00 0.00 5.34
4559 6143 2.337583 GTCTGAAGTTGTGCGCAGATA 58.662 47.619 12.22 0.00 39.33 1.98
4560 6144 2.346847 GTCTGAAGTTGTGCGCAGATAG 59.653 50.000 12.22 3.65 39.33 2.08
4562 6146 2.995939 CTGAAGTTGTGCGCAGATAGAA 59.004 45.455 12.22 0.00 0.00 2.10
4563 6147 3.398406 TGAAGTTGTGCGCAGATAGAAA 58.602 40.909 12.22 0.00 0.00 2.52
4564 6148 3.186409 TGAAGTTGTGCGCAGATAGAAAC 59.814 43.478 12.22 3.84 0.00 2.78
4565 6149 1.726791 AGTTGTGCGCAGATAGAAACG 59.273 47.619 12.22 0.00 0.00 3.60
4569 6153 1.459592 GTGCGCAGATAGAAACGTGTT 59.540 47.619 12.22 0.00 0.00 3.32
4570 6154 1.459209 TGCGCAGATAGAAACGTGTTG 59.541 47.619 5.66 0.00 0.00 3.33
4571 6155 1.786928 GCGCAGATAGAAACGTGTTGC 60.787 52.381 0.30 0.00 0.00 4.17
4575 6159 1.001633 AGATAGAAACGTGTTGCGGGT 59.998 47.619 0.00 0.00 46.52 5.28
4576 6160 1.127951 GATAGAAACGTGTTGCGGGTG 59.872 52.381 0.00 0.00 46.52 4.61
4577 6161 1.500512 TAGAAACGTGTTGCGGGTGC 61.501 55.000 0.00 0.00 46.52 5.01
4595 6194 1.191096 GCGCGTTAAATGGCTTGATG 58.809 50.000 8.43 0.00 0.00 3.07
4621 6222 7.095774 GGAAACGTGTGTGCTCGATATTATATT 60.096 37.037 0.00 0.00 35.78 1.28
4622 6223 7.709269 AACGTGTGTGCTCGATATTATATTT 57.291 32.000 0.00 0.00 35.78 1.40
4643 6244 6.734104 TTTTACTTTGTGCACTGCAATTTT 57.266 29.167 19.41 0.00 41.47 1.82
4686 6287 0.171455 CAGTACGTGGAGCTGACCTC 59.829 60.000 0.00 0.00 39.98 3.85
4694 6295 1.066143 TGGAGCTGACCTCGATTTTCC 60.066 52.381 0.00 0.00 41.71 3.13
4749 6352 0.727398 GGTCATAGCAAGTCGTTGGC 59.273 55.000 0.00 0.00 33.87 4.52
4758 6361 0.748729 AAGTCGTTGGCGGTTTTCCA 60.749 50.000 0.00 0.00 40.70 3.53
4774 6388 1.040893 TCCATGCGGTCGTATGAGGT 61.041 55.000 19.83 0.00 39.96 3.85
4779 6393 0.804933 GCGGTCGTATGAGGTTGGTC 60.805 60.000 0.00 0.00 0.00 4.02
4797 6411 4.899239 GGTGAGGCGCTGGATCCG 62.899 72.222 7.64 3.14 0.00 4.18
4849 6467 1.148157 GACACTCATGCGTGATCCCG 61.148 60.000 22.09 0.00 38.27 5.14
4857 6475 2.658593 CGTGATCCCGGCGACATC 60.659 66.667 9.30 9.84 0.00 3.06
4868 6486 1.468520 CGGCGACATCTTGGATTTTGT 59.531 47.619 0.00 0.00 0.00 2.83
4888 6516 0.607489 AGCCTAAGCCAGCACAGTTG 60.607 55.000 0.00 0.00 41.25 3.16
4911 6539 1.868251 GTACCGCGCTCGACAGAAG 60.868 63.158 5.56 0.00 38.10 2.85
4912 6540 2.036571 TACCGCGCTCGACAGAAGA 61.037 57.895 5.56 0.00 38.10 2.87
4913 6541 1.978712 TACCGCGCTCGACAGAAGAG 61.979 60.000 5.56 0.00 38.10 2.85
4914 6542 2.481009 CGCGCTCGACAGAAGAGA 59.519 61.111 5.56 0.00 37.93 3.10
4917 6545 1.419374 GCGCTCGACAGAAGAGAAAA 58.581 50.000 0.00 0.00 37.93 2.29
4929 6557 4.702131 CAGAAGAGAAAATTACCCCCACAG 59.298 45.833 0.00 0.00 0.00 3.66
4930 6558 3.087370 AGAGAAAATTACCCCCACAGC 57.913 47.619 0.00 0.00 0.00 4.40
4931 6559 2.100197 GAGAAAATTACCCCCACAGCC 58.900 52.381 0.00 0.00 0.00 4.85
4932 6560 1.431243 AGAAAATTACCCCCACAGCCA 59.569 47.619 0.00 0.00 0.00 4.75
4933 6561 1.548719 GAAAATTACCCCCACAGCCAC 59.451 52.381 0.00 0.00 0.00 5.01
4934 6562 0.485099 AAATTACCCCCACAGCCACA 59.515 50.000 0.00 0.00 0.00 4.17
4935 6563 0.485099 AATTACCCCCACAGCCACAA 59.515 50.000 0.00 0.00 0.00 3.33
4936 6564 0.039618 ATTACCCCCACAGCCACAAG 59.960 55.000 0.00 0.00 0.00 3.16
4937 6565 2.075355 TTACCCCCACAGCCACAAGG 62.075 60.000 0.00 0.00 38.23 3.61
4953 6581 4.342951 CCACAAGGCCACATCATCATAAAT 59.657 41.667 5.01 0.00 0.00 1.40
4997 6633 0.036010 CTCCGTCCAGCCACAAGATT 60.036 55.000 0.00 0.00 0.00 2.40
5012 6648 5.358492 ACAAGATTGTTTGCCCACAGCAG 62.358 47.826 0.00 0.00 42.60 4.24
5192 6854 0.320771 GCCTCCTCGCAGAAAGACAA 60.321 55.000 0.00 0.00 34.09 3.18
5195 6857 0.681733 TCCTCGCAGAAAGACAAGCT 59.318 50.000 0.00 0.00 34.09 3.74
5196 6858 1.074752 CCTCGCAGAAAGACAAGCTC 58.925 55.000 0.00 0.00 34.09 4.09
5404 7075 1.198408 CGTCCACTTCAGTAGCACGTA 59.802 52.381 0.00 0.00 0.00 3.57
5433 7104 2.513204 TCGGGTAGCTCTCGTCCG 60.513 66.667 0.00 0.00 41.36 4.79
5505 7176 2.969806 CTGGTGTGTGCATGCCGAC 61.970 63.158 16.68 12.12 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 135 5.815740 AGAAGCGGACGACAAAATATTACAT 59.184 36.000 0.00 0.00 0.00 2.29
148 150 1.067776 TCGAAAGAAGGAGAAGCGGAC 60.068 52.381 0.00 0.00 37.03 4.79
151 153 1.351153 GGTCGAAAGAAGGAGAAGCG 58.649 55.000 0.00 0.00 45.01 4.68
163 165 4.831155 AGGAGAATATATGTCGGGTCGAAA 59.169 41.667 0.00 0.00 37.72 3.46
167 169 4.345854 AGGAGGAGAATATATGTCGGGTC 58.654 47.826 0.00 0.00 0.00 4.46
172 174 8.650143 AGAGAGAAAGGAGGAGAATATATGTC 57.350 38.462 0.00 0.00 0.00 3.06
173 175 9.088987 GAAGAGAGAAAGGAGGAGAATATATGT 57.911 37.037 0.00 0.00 0.00 2.29
204 206 9.920946 ATCTTGCTAGTGGGATTAAAAGATAAA 57.079 29.630 0.00 0.00 32.77 1.40
205 207 9.342308 CATCTTGCTAGTGGGATTAAAAGATAA 57.658 33.333 0.00 0.00 32.77 1.75
207 209 6.264067 GCATCTTGCTAGTGGGATTAAAAGAT 59.736 38.462 0.00 0.00 40.96 2.40
209 211 5.221126 GGCATCTTGCTAGTGGGATTAAAAG 60.221 44.000 0.00 0.00 44.28 2.27
210 212 4.644685 GGCATCTTGCTAGTGGGATTAAAA 59.355 41.667 0.00 0.00 44.28 1.52
211 213 4.207165 GGCATCTTGCTAGTGGGATTAAA 58.793 43.478 0.00 0.00 44.28 1.52
212 214 3.435026 GGGCATCTTGCTAGTGGGATTAA 60.435 47.826 0.00 0.00 44.28 1.40
213 215 2.106511 GGGCATCTTGCTAGTGGGATTA 59.893 50.000 0.00 0.00 44.28 1.75
214 216 1.133668 GGGCATCTTGCTAGTGGGATT 60.134 52.381 0.00 0.00 44.28 3.01
215 217 0.475906 GGGCATCTTGCTAGTGGGAT 59.524 55.000 0.00 0.00 44.28 3.85
216 218 0.913934 TGGGCATCTTGCTAGTGGGA 60.914 55.000 0.00 0.00 44.28 4.37
217 219 0.184451 ATGGGCATCTTGCTAGTGGG 59.816 55.000 0.00 0.00 44.28 4.61
218 220 1.315690 CATGGGCATCTTGCTAGTGG 58.684 55.000 0.00 0.00 44.28 4.00
219 221 0.666913 GCATGGGCATCTTGCTAGTG 59.333 55.000 0.00 0.00 44.28 2.74
274 276 2.884012 TGGATCAATCACAACAAGCGTT 59.116 40.909 0.00 0.00 35.01 4.84
277 279 3.184541 GCATGGATCAATCACAACAAGC 58.815 45.455 0.00 0.00 0.00 4.01
279 281 3.193903 CCTGCATGGATCAATCACAACAA 59.806 43.478 0.00 0.00 38.35 2.83
292 294 3.713248 ACATGAGATTACTCCTGCATGGA 59.287 43.478 0.00 5.03 40.64 3.41
352 354 6.806751 TCGATGAAATTCTCGAGATACCTTT 58.193 36.000 17.44 13.18 38.86 3.11
354 356 6.392625 TTCGATGAAATTCTCGAGATACCT 57.607 37.500 17.44 1.01 43.94 3.08
402 404 1.611491 CGCTCCTCCTCACCTTATCTC 59.389 57.143 0.00 0.00 0.00 2.75
404 406 0.676736 CCGCTCCTCCTCACCTTATC 59.323 60.000 0.00 0.00 0.00 1.75
421 423 2.124736 AATCACCATCGCACCCCG 60.125 61.111 0.00 0.00 38.61 5.73
426 428 0.676466 GACCACCAATCACCATCGCA 60.676 55.000 0.00 0.00 0.00 5.10
428 430 1.089481 CCGACCACCAATCACCATCG 61.089 60.000 0.00 0.00 0.00 3.84
430 432 0.035439 GTCCGACCACCAATCACCAT 60.035 55.000 0.00 0.00 0.00 3.55
437 439 1.180456 TCGCTAAGTCCGACCACCAA 61.180 55.000 0.00 0.00 0.00 3.67
449 451 0.109342 ATCCCCATGCCTTCGCTAAG 59.891 55.000 0.00 0.00 35.36 2.18
451 453 1.053835 TCATCCCCATGCCTTCGCTA 61.054 55.000 0.00 0.00 35.36 4.26
452 454 1.925285 TTCATCCCCATGCCTTCGCT 61.925 55.000 0.00 0.00 35.36 4.93
456 458 0.394352 GTCGTTCATCCCCATGCCTT 60.394 55.000 0.00 0.00 0.00 4.35
462 464 4.444838 CGGCGTCGTTCATCCCCA 62.445 66.667 0.00 0.00 0.00 4.96
531 533 7.466804 TCCTTATCTCCCACAACTTTATTGTT 58.533 34.615 0.00 0.00 0.00 2.83
532 534 7.027874 TCCTTATCTCCCACAACTTTATTGT 57.972 36.000 0.00 0.00 0.00 2.71
536 538 6.884472 TCATCCTTATCTCCCACAACTTTA 57.116 37.500 0.00 0.00 0.00 1.85
537 539 5.779241 TCATCCTTATCTCCCACAACTTT 57.221 39.130 0.00 0.00 0.00 2.66
539 541 4.383118 CGTTCATCCTTATCTCCCACAACT 60.383 45.833 0.00 0.00 0.00 3.16
628 656 0.240145 TCTTGCAGTACAGACCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
642 670 0.890542 TGGTGTGTCTGCCATCTTGC 60.891 55.000 0.00 0.00 0.00 4.01
643 671 1.830279 ATGGTGTGTCTGCCATCTTG 58.170 50.000 0.00 0.00 41.24 3.02
654 682 2.886523 CAAGTTGGTGATGATGGTGTGT 59.113 45.455 0.00 0.00 0.00 3.72
709 737 4.576873 TGGTTTTCAGCGTAAACTGATGAA 59.423 37.500 9.94 2.95 45.75 2.57
712 740 4.578928 ACTTGGTTTTCAGCGTAAACTGAT 59.421 37.500 9.94 0.00 45.75 2.90
713 741 3.942748 ACTTGGTTTTCAGCGTAAACTGA 59.057 39.130 9.94 0.00 44.84 3.41
715 743 3.488553 GCACTTGGTTTTCAGCGTAAACT 60.489 43.478 9.94 0.00 36.12 2.66
741 769 9.995957 CGAAAAATGGAAAACAAATAAAAAGGT 57.004 25.926 0.00 0.00 0.00 3.50
766 794 9.579768 TTTGTCCATGTTAATTGAATAAATCCG 57.420 29.630 0.00 0.00 0.00 4.18
775 803 8.583296 TGTGATTCATTTGTCCATGTTAATTGA 58.417 29.630 0.00 0.00 0.00 2.57
778 806 7.493320 GCATGTGATTCATTTGTCCATGTTAAT 59.507 33.333 11.86 0.00 34.09 1.40
779 807 6.812656 GCATGTGATTCATTTGTCCATGTTAA 59.187 34.615 11.86 0.00 34.09 2.01
783 811 5.006153 AGCATGTGATTCATTTGTCCATG 57.994 39.130 7.83 7.83 34.09 3.66
787 815 9.065871 GTTAAGTTAGCATGTGATTCATTTGTC 57.934 33.333 0.00 0.00 34.09 3.18
797 825 9.542462 GGAGTATTATGTTAAGTTAGCATGTGA 57.458 33.333 19.20 8.10 31.82 3.58
893 933 7.962995 TTTTAATTGGGCCTTTTTCCTTTTT 57.037 28.000 4.53 0.00 0.00 1.94
917 957 7.669089 TTTACCACCTCTCTTTTTCCATTTT 57.331 32.000 0.00 0.00 0.00 1.82
918 958 7.855784 ATTTACCACCTCTCTTTTTCCATTT 57.144 32.000 0.00 0.00 0.00 2.32
919 959 7.855784 AATTTACCACCTCTCTTTTTCCATT 57.144 32.000 0.00 0.00 0.00 3.16
920 960 7.039011 GGAAATTTACCACCTCTCTTTTTCCAT 60.039 37.037 0.00 0.00 39.42 3.41
921 961 6.266786 GGAAATTTACCACCTCTCTTTTTCCA 59.733 38.462 0.00 0.00 39.42 3.53
922 962 6.493802 AGGAAATTTACCACCTCTCTTTTTCC 59.506 38.462 0.00 0.00 39.74 3.13
923 963 7.526142 AGGAAATTTACCACCTCTCTTTTTC 57.474 36.000 0.00 0.00 0.00 2.29
929 969 6.010850 AGGAAAAGGAAATTTACCACCTCTC 58.989 40.000 0.00 0.00 31.89 3.20
930 982 5.965486 AGGAAAAGGAAATTTACCACCTCT 58.035 37.500 0.00 0.00 31.89 3.69
931 983 6.665992 AAGGAAAAGGAAATTTACCACCTC 57.334 37.500 0.00 0.00 31.89 3.85
932 984 6.042781 GGAAAGGAAAAGGAAATTTACCACCT 59.957 38.462 0.00 0.00 0.00 4.00
934 986 7.062749 AGGAAAGGAAAAGGAAATTTACCAC 57.937 36.000 0.00 0.00 0.00 4.16
945 997 5.705609 TGATCGAAAAGGAAAGGAAAAGG 57.294 39.130 0.00 0.00 0.00 3.11
946 998 8.084684 AGATTTGATCGAAAAGGAAAGGAAAAG 58.915 33.333 0.00 0.00 0.00 2.27
951 1003 6.500684 TCAGATTTGATCGAAAAGGAAAGG 57.499 37.500 0.00 0.00 0.00 3.11
956 1008 8.072567 GGACATAATCAGATTTGATCGAAAAGG 58.927 37.037 0.00 0.00 43.20 3.11
1290 1398 1.373497 GGGCGGATCTAGATGTGCG 60.373 63.158 10.74 6.42 0.00 5.34
1291 1399 1.004440 GGGGCGGATCTAGATGTGC 60.004 63.158 10.74 13.12 0.00 4.57
1292 1400 0.319728 CAGGGGCGGATCTAGATGTG 59.680 60.000 10.74 3.13 0.00 3.21
1293 1401 0.105453 ACAGGGGCGGATCTAGATGT 60.105 55.000 10.74 0.00 0.00 3.06
1340 1452 4.681942 CCAAGTATGTCAAGCGATACTAGC 59.318 45.833 0.00 0.00 34.87 3.42
1355 1467 2.024176 AGCGCTAACACCCAAGTATG 57.976 50.000 8.99 0.00 0.00 2.39
1540 1654 1.557832 GGCATACTGTCACAAGGGGTA 59.442 52.381 0.00 0.00 0.00 3.69
1656 1776 9.288576 AGCAATAGATAGCATGCTTAATAACAA 57.711 29.630 28.02 5.06 46.36 2.83
1707 1836 7.463961 AGTACCCATCCTATAGTACGAAATG 57.536 40.000 0.00 0.00 39.99 2.32
1741 1870 1.005294 CGTTTTCAGCTGCATGTGCC 61.005 55.000 9.47 0.00 41.18 5.01
1864 2005 7.384660 CAGAACTCATACAGCTCCTTTGATATC 59.615 40.741 0.00 0.00 0.00 1.63
1991 2142 8.043710 AGAAATGAAGAATACCACTCTAAGGTG 58.956 37.037 0.00 0.00 40.26 4.00
2021 2172 8.470805 GTTAGTTCAAGATCATCTAAGGTGAGA 58.529 37.037 0.00 0.00 0.00 3.27
2022 2173 8.474025 AGTTAGTTCAAGATCATCTAAGGTGAG 58.526 37.037 0.00 0.00 0.00 3.51
2023 2174 8.367660 AGTTAGTTCAAGATCATCTAAGGTGA 57.632 34.615 0.00 0.00 0.00 4.02
2052 2203 7.095774 CGTGAACTAACTTTGTATGCTACACTT 60.096 37.037 0.00 0.00 38.63 3.16
2059 2210 9.027129 TCATATACGTGAACTAACTTTGTATGC 57.973 33.333 0.00 0.00 0.00 3.14
2077 2228 9.411801 ACTTGATAGTGTGCTTATTCATATACG 57.588 33.333 0.00 0.00 31.99 3.06
2133 2287 8.943909 ATACTATTGGAGCAGTTACTGTTAAC 57.056 34.615 14.23 0.00 38.34 2.01
2218 2525 2.964740 TGACAACATCAGCTGCTAGTC 58.035 47.619 9.47 12.36 31.91 2.59
2234 2541 5.359576 GGGTGATAAAAGCATACCAATGACA 59.640 40.000 0.00 0.00 34.84 3.58
2240 2547 5.122707 TCATGGGTGATAAAAGCATACCA 57.877 39.130 0.00 0.00 33.10 3.25
2308 2720 8.973378 GCTAAGTCACTACTAATCAATGCTAAG 58.027 37.037 0.00 0.00 33.75 2.18
2312 2724 7.721286 ATGCTAAGTCACTACTAATCAATGC 57.279 36.000 0.00 0.00 33.75 3.56
2313 2725 9.317936 TCAATGCTAAGTCACTACTAATCAATG 57.682 33.333 0.00 0.00 33.75 2.82
2315 2727 9.890629 AATCAATGCTAAGTCACTACTAATCAA 57.109 29.630 0.00 0.00 33.75 2.57
2328 2740 9.057089 GGCATACTTTACTAATCAATGCTAAGT 57.943 33.333 0.00 0.00 38.57 2.24
2329 2741 8.223769 CGGCATACTTTACTAATCAATGCTAAG 58.776 37.037 0.00 0.00 38.57 2.18
2330 2742 7.713507 ACGGCATACTTTACTAATCAATGCTAA 59.286 33.333 0.00 0.00 38.57 3.09
2331 2743 7.170828 CACGGCATACTTTACTAATCAATGCTA 59.829 37.037 0.00 0.00 38.57 3.49
2332 2744 6.017934 CACGGCATACTTTACTAATCAATGCT 60.018 38.462 0.00 0.00 38.57 3.79
2333 2745 6.136071 CACGGCATACTTTACTAATCAATGC 58.864 40.000 0.00 0.00 37.97 3.56
2334 2746 6.017934 AGCACGGCATACTTTACTAATCAATG 60.018 38.462 0.00 0.00 0.00 2.82
2377 2789 9.097257 CATGTCACAGTTTTAACCAGAAAAATT 57.903 29.630 0.00 0.00 30.36 1.82
2388 2814 5.883115 TGAAGTCCACATGTCACAGTTTTAA 59.117 36.000 0.00 0.00 0.00 1.52
2503 2975 3.837146 ACCATGCCACCATCAAATTACAA 59.163 39.130 0.00 0.00 0.00 2.41
2505 2977 3.784338 CACCATGCCACCATCAAATTAC 58.216 45.455 0.00 0.00 0.00 1.89
2507 2979 1.065998 GCACCATGCCACCATCAAATT 60.066 47.619 0.00 0.00 37.42 1.82
2508 2980 0.538118 GCACCATGCCACCATCAAAT 59.462 50.000 0.00 0.00 37.42 2.32
2526 3045 9.801873 ATGGTTAGACAAATAAATAACATGTGC 57.198 29.630 0.00 0.00 31.25 4.57
2702 3240 3.889815 TGAAATGGAATAGGAGCACTGG 58.110 45.455 0.00 0.00 0.00 4.00
2800 3338 2.889045 TGCTGGTACTGTAAGACTTCGT 59.111 45.455 0.00 0.00 37.43 3.85
2813 3351 1.597461 GAGTCTGGGGTGCTGGTAC 59.403 63.158 0.00 0.00 0.00 3.34
2822 3360 1.196012 GAGTAACCTGGAGTCTGGGG 58.804 60.000 0.00 2.38 36.44 4.96
2836 3374 4.153475 GCTTGGCAAAGTTATCGTGAGTAA 59.847 41.667 2.03 0.00 35.69 2.24
2841 3379 1.539388 TGGCTTGGCAAAGTTATCGTG 59.461 47.619 2.03 0.00 35.69 4.35
2862 3400 7.067615 CCTTGTTAAGATCAGAGTGCTAGAGTA 59.932 40.741 0.00 0.00 0.00 2.59
2878 3416 8.287439 TGTTTCTGAATTTGACCTTGTTAAGA 57.713 30.769 0.00 0.00 0.00 2.10
2880 3418 8.287439 TCTGTTTCTGAATTTGACCTTGTTAA 57.713 30.769 0.00 0.00 0.00 2.01
2889 3427 6.524734 TGCTAGTCTCTGTTTCTGAATTTGA 58.475 36.000 0.00 0.00 0.00 2.69
2895 3433 5.276461 TGTTTGCTAGTCTCTGTTTCTGA 57.724 39.130 0.00 0.00 0.00 3.27
2939 3477 6.239289 GCTAGAGATAGAGGCATCTGAAGTTT 60.239 42.308 11.96 0.00 35.37 2.66
2940 3478 5.243730 GCTAGAGATAGAGGCATCTGAAGTT 59.756 44.000 11.96 0.00 35.37 2.66
2941 3479 4.766891 GCTAGAGATAGAGGCATCTGAAGT 59.233 45.833 11.96 0.00 35.37 3.01
2942 3480 4.142622 CGCTAGAGATAGAGGCATCTGAAG 60.143 50.000 11.96 0.62 35.37 3.02
2944 3482 3.244735 ACGCTAGAGATAGAGGCATCTGA 60.245 47.826 11.96 0.00 35.37 3.27
2949 3514 4.276183 CAGTTAACGCTAGAGATAGAGGCA 59.724 45.833 0.00 0.00 0.00 4.75
3035 3600 0.756903 TATCCTAACGGGCTGGCTTC 59.243 55.000 0.00 0.00 34.39 3.86
3085 3650 9.612620 GACTGTTTAAATATGTTCTTGTTCAGG 57.387 33.333 0.00 0.00 0.00 3.86
3090 3655 9.950680 CAACAGACTGTTTAAATATGTTCTTGT 57.049 29.630 18.27 0.00 38.77 3.16
3114 3683 2.024464 CCATATGGAAACCCAGGGACAA 60.024 50.000 17.49 0.00 37.09 3.18
3124 3693 4.454728 TTGCTTTGCTCCATATGGAAAC 57.545 40.909 24.54 19.17 44.91 2.78
3152 3721 3.358707 GGCGGCAGCGGTTTTACA 61.359 61.111 3.07 0.00 46.35 2.41
3153 3726 2.696759 ATGGCGGCAGCGGTTTTAC 61.697 57.895 19.29 0.00 46.35 2.01
3262 3843 2.631062 CCGTTATGTATGGGAGGTAGCA 59.369 50.000 0.00 0.00 0.00 3.49
3322 3912 8.083828 ACTAAGGATAATTTGCTCAGAAGAGA 57.916 34.615 0.00 0.00 44.98 3.10
3383 3973 8.844244 TCTTATATTTTGAGACGGAGGTAGTAC 58.156 37.037 0.00 0.00 0.00 2.73
3385 3975 7.893124 TCTTATATTTTGAGACGGAGGTAGT 57.107 36.000 0.00 0.00 0.00 2.73
3386 3976 8.361139 ACATCTTATATTTTGAGACGGAGGTAG 58.639 37.037 0.00 0.00 0.00 3.18
3387 3977 8.246430 ACATCTTATATTTTGAGACGGAGGTA 57.754 34.615 0.00 0.00 0.00 3.08
3388 3978 7.125792 ACATCTTATATTTTGAGACGGAGGT 57.874 36.000 0.00 0.00 0.00 3.85
3389 3979 8.438676 AAACATCTTATATTTTGAGACGGAGG 57.561 34.615 0.00 0.00 0.00 4.30
3434 4107 7.486870 CCGTCCCAAAATATAAGTAGTTTTTGC 59.513 37.037 0.00 0.00 37.60 3.68
3435 4108 8.732531 TCCGTCCCAAAATATAAGTAGTTTTTG 58.267 33.333 0.00 0.00 38.28 2.44
3440 4113 5.664457 ACCTCCGTCCCAAAATATAAGTAGT 59.336 40.000 0.00 0.00 0.00 2.73
3442 4115 6.840705 ACTACCTCCGTCCCAAAATATAAGTA 59.159 38.462 0.00 0.00 0.00 2.24
3444 4117 6.170846 ACTACCTCCGTCCCAAAATATAAG 57.829 41.667 0.00 0.00 0.00 1.73
3447 4120 5.664457 AGTTACTACCTCCGTCCCAAAATAT 59.336 40.000 0.00 0.00 0.00 1.28
3448 4121 5.025453 AGTTACTACCTCCGTCCCAAAATA 58.975 41.667 0.00 0.00 0.00 1.40
3449 4122 3.842436 AGTTACTACCTCCGTCCCAAAAT 59.158 43.478 0.00 0.00 0.00 1.82
3450 4123 3.242011 AGTTACTACCTCCGTCCCAAAA 58.758 45.455 0.00 0.00 0.00 2.44
3451 4124 2.893424 AGTTACTACCTCCGTCCCAAA 58.107 47.619 0.00 0.00 0.00 3.28
3452 4125 2.610438 AGTTACTACCTCCGTCCCAA 57.390 50.000 0.00 0.00 0.00 4.12
3453 4126 2.564062 CAAAGTTACTACCTCCGTCCCA 59.436 50.000 0.00 0.00 0.00 4.37
3454 4127 2.827921 TCAAAGTTACTACCTCCGTCCC 59.172 50.000 0.00 0.00 0.00 4.46
3455 4128 3.760684 TCTCAAAGTTACTACCTCCGTCC 59.239 47.826 0.00 0.00 0.00 4.79
3456 4129 4.142425 CCTCTCAAAGTTACTACCTCCGTC 60.142 50.000 0.00 0.00 0.00 4.79
3457 4130 3.762823 CCTCTCAAAGTTACTACCTCCGT 59.237 47.826 0.00 0.00 0.00 4.69
3458 4131 3.130693 CCCTCTCAAAGTTACTACCTCCG 59.869 52.174 0.00 0.00 0.00 4.63
3459 4132 4.160065 GTCCCTCTCAAAGTTACTACCTCC 59.840 50.000 0.00 0.00 0.00 4.30
3461 4134 4.095211 GGTCCCTCTCAAAGTTACTACCT 58.905 47.826 0.00 0.00 0.00 3.08
3462 4135 4.095211 AGGTCCCTCTCAAAGTTACTACC 58.905 47.826 0.00 0.00 0.00 3.18
3463 4136 5.741962 AAGGTCCCTCTCAAAGTTACTAC 57.258 43.478 0.00 0.00 0.00 2.73
3572 5129 3.890756 TGTTCGTACCAGGACAAGTTCTA 59.109 43.478 0.00 0.00 0.00 2.10
3641 5206 4.682860 GTCACATTTTCTGCATGGTTTCAG 59.317 41.667 0.00 0.00 0.00 3.02
3704 5271 4.607239 CTGGTTAGGAGAAGGTACCTACA 58.393 47.826 16.67 2.89 38.31 2.74
3705 5272 3.384146 GCTGGTTAGGAGAAGGTACCTAC 59.616 52.174 16.67 7.55 38.31 3.18
3788 5355 5.587443 GCCGAGGGTTGTATACATTTAACTT 59.413 40.000 6.36 0.00 0.00 2.66
3797 5364 1.052694 AGGGGCCGAGGGTTGTATAC 61.053 60.000 0.00 0.00 0.00 1.47
3798 5365 0.326808 AAGGGGCCGAGGGTTGTATA 60.327 55.000 0.00 0.00 0.00 1.47
3808 5375 1.717038 TTAACCAACCAAGGGGCCGA 61.717 55.000 0.00 0.00 37.90 5.54
3811 5378 1.639722 ATGTTAACCAACCAAGGGGC 58.360 50.000 2.48 0.00 37.90 5.80
3824 5391 7.807198 TGTTACTTGGCAGGGATATATGTTAA 58.193 34.615 0.44 0.00 0.00 2.01
3835 5402 6.469782 AAATATCATTGTTACTTGGCAGGG 57.530 37.500 0.44 0.00 0.00 4.45
3847 5414 4.821805 CACGGGGCTAGAAAATATCATTGT 59.178 41.667 0.00 0.00 0.00 2.71
3868 5435 0.819259 TGTTGTGGCAGGAAGAGCAC 60.819 55.000 0.00 0.00 0.00 4.40
3996 5563 1.347320 CGAACGGAGGAAGTAACTGC 58.653 55.000 0.00 0.00 0.00 4.40
4019 5586 9.520204 AATTTGAACTGAAACAACATCACTTAG 57.480 29.630 0.00 0.00 0.00 2.18
4051 5618 6.726764 AGAACAGAATAACAACTACTCCCTCT 59.273 38.462 0.00 0.00 0.00 3.69
4098 5665 4.442375 ACGAGTGAGTAAGAACATCTGG 57.558 45.455 0.00 0.00 0.00 3.86
4110 5681 2.622064 AAAGGAAGCAACGAGTGAGT 57.378 45.000 0.00 0.00 0.00 3.41
4111 5682 3.065371 ACAAAAAGGAAGCAACGAGTGAG 59.935 43.478 0.00 0.00 0.00 3.51
4112 5683 3.013921 ACAAAAAGGAAGCAACGAGTGA 58.986 40.909 0.00 0.00 0.00 3.41
4113 5684 3.108144 CACAAAAAGGAAGCAACGAGTG 58.892 45.455 0.00 0.00 0.00 3.51
4137 5708 2.262292 GTAACCCGGCTGCACGTA 59.738 61.111 0.50 0.00 0.00 3.57
4235 5806 1.305633 CACCTGCTCCTCCCTCAGA 60.306 63.158 0.00 0.00 0.00 3.27
4253 5824 0.647410 CACAGTGGACGCATTCGATC 59.353 55.000 0.00 0.00 39.41 3.69
4333 5904 0.758734 TAGAGCCACCATGGATTCGG 59.241 55.000 21.47 13.86 35.51 4.30
4347 5918 2.428890 TCTAGAGTGCTTGGCTTAGAGC 59.571 50.000 0.00 0.00 41.46 4.09
4348 5919 4.099266 ACATCTAGAGTGCTTGGCTTAGAG 59.901 45.833 0.00 0.00 0.00 2.43
4349 5920 4.026744 ACATCTAGAGTGCTTGGCTTAGA 58.973 43.478 0.00 0.00 0.00 2.10
4350 5921 4.399004 ACATCTAGAGTGCTTGGCTTAG 57.601 45.455 0.00 0.00 0.00 2.18
4351 5922 4.826274 AACATCTAGAGTGCTTGGCTTA 57.174 40.909 0.00 0.00 0.00 3.09
4352 5923 3.710209 AACATCTAGAGTGCTTGGCTT 57.290 42.857 0.00 0.00 0.00 4.35
4353 5924 3.262915 AGAAACATCTAGAGTGCTTGGCT 59.737 43.478 0.00 0.00 0.00 4.75
4355 5926 6.183360 GCTTAAGAAACATCTAGAGTGCTTGG 60.183 42.308 6.67 4.61 0.00 3.61
4356 5927 6.454848 CGCTTAAGAAACATCTAGAGTGCTTG 60.455 42.308 6.67 0.00 0.00 4.01
4357 5928 5.578727 CGCTTAAGAAACATCTAGAGTGCTT 59.421 40.000 6.67 7.11 0.00 3.91
4401 5972 4.683832 AGTGCTTACATTACAGGACGATC 58.316 43.478 0.00 0.00 36.52 3.69
4426 5997 3.034635 CAGGTAGGAGTATCTGCCAAGT 58.965 50.000 0.00 0.00 41.21 3.16
4428 5999 3.398318 TCAGGTAGGAGTATCTGCCAA 57.602 47.619 0.00 0.00 41.21 4.52
4429 6000 3.117131 TCATCAGGTAGGAGTATCTGCCA 60.117 47.826 0.00 0.00 41.21 4.92
4430 6001 3.501349 TCATCAGGTAGGAGTATCTGCC 58.499 50.000 0.00 0.00 37.31 4.85
4431 6002 4.526262 ACATCATCAGGTAGGAGTATCTGC 59.474 45.833 0.00 0.00 37.31 4.26
4432 6003 5.538053 ACACATCATCAGGTAGGAGTATCTG 59.462 44.000 0.00 0.00 38.59 2.90
4433 6004 5.538053 CACACATCATCAGGTAGGAGTATCT 59.462 44.000 0.00 0.00 33.73 1.98
4434 6005 5.777802 CACACATCATCAGGTAGGAGTATC 58.222 45.833 0.00 0.00 0.00 2.24
4435 6006 4.039730 GCACACATCATCAGGTAGGAGTAT 59.960 45.833 0.00 0.00 0.00 2.12
4436 6007 3.384789 GCACACATCATCAGGTAGGAGTA 59.615 47.826 0.00 0.00 0.00 2.59
4437 6008 2.169352 GCACACATCATCAGGTAGGAGT 59.831 50.000 0.00 0.00 0.00 3.85
4438 6009 2.800985 CGCACACATCATCAGGTAGGAG 60.801 54.545 0.00 0.00 0.00 3.69
4439 6010 1.136891 CGCACACATCATCAGGTAGGA 59.863 52.381 0.00 0.00 0.00 2.94
4440 6011 1.134699 ACGCACACATCATCAGGTAGG 60.135 52.381 0.00 0.00 0.00 3.18
4441 6012 1.929169 CACGCACACATCATCAGGTAG 59.071 52.381 0.00 0.00 0.00 3.18
4442 6013 2.006552 GCACGCACACATCATCAGGTA 61.007 52.381 0.00 0.00 0.00 3.08
4443 6014 1.300971 GCACGCACACATCATCAGGT 61.301 55.000 0.00 0.00 0.00 4.00
4444 6015 1.300266 TGCACGCACACATCATCAGG 61.300 55.000 0.00 0.00 0.00 3.86
4445 6016 0.518195 TTGCACGCACACATCATCAG 59.482 50.000 0.00 0.00 0.00 2.90
4446 6017 0.238025 GTTGCACGCACACATCATCA 59.762 50.000 0.00 0.00 0.00 3.07
4447 6018 0.454957 GGTTGCACGCACACATCATC 60.455 55.000 0.00 0.00 0.00 2.92
4448 6019 0.890542 AGGTTGCACGCACACATCAT 60.891 50.000 0.00 0.00 0.00 2.45
4451 6022 0.819259 AAGAGGTTGCACGCACACAT 60.819 50.000 0.00 0.00 0.00 3.21
4457 6028 1.009829 CTGGATAAGAGGTTGCACGC 58.990 55.000 0.00 0.00 0.00 5.34
4458 6029 2.386661 ACTGGATAAGAGGTTGCACG 57.613 50.000 0.00 0.00 0.00 5.34
4461 6041 3.017442 GGGAAACTGGATAAGAGGTTGC 58.983 50.000 0.00 0.00 0.00 4.17
4465 6045 2.500098 TGTCGGGAAACTGGATAAGAGG 59.500 50.000 0.00 0.00 37.31 3.69
4467 6047 3.437213 TCTGTCGGGAAACTGGATAAGA 58.563 45.455 0.00 0.00 37.31 2.10
4468 6048 3.887621 TCTGTCGGGAAACTGGATAAG 57.112 47.619 0.00 0.00 37.31 1.73
4470 6050 4.098960 GTGTATCTGTCGGGAAACTGGATA 59.901 45.833 0.00 0.00 37.31 2.59
4480 6060 2.095853 GCAAATGTGTGTATCTGTCGGG 59.904 50.000 0.00 0.00 0.00 5.14
4483 6063 3.426695 GGCAGCAAATGTGTGTATCTGTC 60.427 47.826 0.00 0.00 0.00 3.51
4489 6070 0.536233 ACGGGCAGCAAATGTGTGTA 60.536 50.000 0.00 0.00 0.00 2.90
4503 6084 0.455410 TGAAGCAAATGCATACGGGC 59.545 50.000 8.28 1.37 45.16 6.13
4510 6091 3.958147 AGGATGATGATGAAGCAAATGCA 59.042 39.130 8.28 0.00 45.16 3.96
4513 6094 7.664731 CCTTAGTAGGATGATGATGAAGCAAAT 59.335 37.037 0.00 0.00 45.05 2.32
4514 6095 6.994496 CCTTAGTAGGATGATGATGAAGCAAA 59.006 38.462 0.00 0.00 45.05 3.68
4535 6119 1.202592 TGCGCACAACTTCAGACCTTA 60.203 47.619 5.66 0.00 0.00 2.69
4540 6124 2.231235 TCTATCTGCGCACAACTTCAGA 59.769 45.455 5.66 0.00 39.54 3.27
4553 6137 1.201921 CCGCAACACGTTTCTATCTGC 60.202 52.381 0.00 0.00 41.42 4.26
4559 6143 2.830285 GCACCCGCAACACGTTTCT 61.830 57.895 0.00 0.00 41.42 2.52
4560 6144 2.353030 GCACCCGCAACACGTTTC 60.353 61.111 0.00 0.00 41.42 2.78
4571 6155 2.099446 CCATTTAACGCGCACCCG 59.901 61.111 5.73 0.00 37.57 5.28
4575 6159 0.808125 ATCAAGCCATTTAACGCGCA 59.192 45.000 5.73 0.00 0.00 6.09
4576 6160 1.191096 CATCAAGCCATTTAACGCGC 58.809 50.000 5.73 0.00 0.00 6.86
4577 6161 1.400142 TCCATCAAGCCATTTAACGCG 59.600 47.619 3.53 3.53 0.00 6.01
4579 6163 3.851403 CGTTTCCATCAAGCCATTTAACG 59.149 43.478 0.00 0.00 0.00 3.18
4580 6164 4.621034 CACGTTTCCATCAAGCCATTTAAC 59.379 41.667 0.00 0.00 0.00 2.01
4595 6194 1.705256 TATCGAGCACACACGTTTCC 58.295 50.000 0.00 0.00 0.00 3.13
4621 6222 5.005203 CGAAAATTGCAGTGCACAAAGTAAA 59.995 36.000 19.58 0.00 38.71 2.01
4622 6223 4.502282 CGAAAATTGCAGTGCACAAAGTAA 59.498 37.500 19.58 14.02 38.71 2.24
4627 6228 2.159324 TGACGAAAATTGCAGTGCACAA 60.159 40.909 19.58 4.24 38.71 3.33
4628 6229 1.403323 TGACGAAAATTGCAGTGCACA 59.597 42.857 19.58 9.87 38.71 4.57
4643 6244 1.879380 CAAACAAAGAGGCCATGACGA 59.121 47.619 5.01 0.00 0.00 4.20
4694 6295 3.434637 CTCACCGTTTCCAACAACAAAG 58.565 45.455 0.00 0.00 0.00 2.77
4749 6352 1.015085 TACGACCGCATGGAAAACCG 61.015 55.000 0.00 0.00 39.21 4.44
4758 6361 0.179084 CCAACCTCATACGACCGCAT 60.179 55.000 0.00 0.00 0.00 4.73
4774 6388 4.680237 CAGCGCCTCACCGACCAA 62.680 66.667 2.29 0.00 0.00 3.67
4779 6393 4.899239 GGATCCAGCGCCTCACCG 62.899 72.222 6.95 0.00 0.00 4.94
4797 6411 3.511146 TGGAATCTTTTTGTGCCTGGATC 59.489 43.478 0.00 0.00 0.00 3.36
4849 6467 3.487544 GCTACAAAATCCAAGATGTCGCC 60.488 47.826 0.00 0.00 30.77 5.54
4857 6475 4.016444 TGGCTTAGGCTACAAAATCCAAG 58.984 43.478 7.43 0.00 38.73 3.61
4868 6486 0.984230 AACTGTGCTGGCTTAGGCTA 59.016 50.000 7.43 0.00 38.73 3.93
4911 6539 2.100197 GGCTGTGGGGGTAATTTTCTC 58.900 52.381 0.00 0.00 0.00 2.87
4912 6540 1.431243 TGGCTGTGGGGGTAATTTTCT 59.569 47.619 0.00 0.00 0.00 2.52
4913 6541 1.548719 GTGGCTGTGGGGGTAATTTTC 59.451 52.381 0.00 0.00 0.00 2.29
4914 6542 1.133009 TGTGGCTGTGGGGGTAATTTT 60.133 47.619 0.00 0.00 0.00 1.82
4917 6545 0.039618 CTTGTGGCTGTGGGGGTAAT 59.960 55.000 0.00 0.00 0.00 1.89
4930 6558 1.771565 ATGATGATGTGGCCTTGTGG 58.228 50.000 3.32 0.00 0.00 4.17
4931 6559 4.987408 TTTATGATGATGTGGCCTTGTG 57.013 40.909 3.32 0.00 0.00 3.33
4932 6560 6.238731 CGTTATTTATGATGATGTGGCCTTGT 60.239 38.462 3.32 0.00 0.00 3.16
4933 6561 6.144854 CGTTATTTATGATGATGTGGCCTTG 58.855 40.000 3.32 0.00 0.00 3.61
4934 6562 5.241506 CCGTTATTTATGATGATGTGGCCTT 59.758 40.000 3.32 0.00 0.00 4.35
4935 6563 4.761739 CCGTTATTTATGATGATGTGGCCT 59.238 41.667 3.32 0.00 0.00 5.19
4936 6564 4.759693 TCCGTTATTTATGATGATGTGGCC 59.240 41.667 0.00 0.00 0.00 5.36
4937 6565 5.334879 GGTCCGTTATTTATGATGATGTGGC 60.335 44.000 0.00 0.00 0.00 5.01
4938 6566 5.181245 GGGTCCGTTATTTATGATGATGTGG 59.819 44.000 0.00 0.00 0.00 4.17
4939 6567 5.181245 GGGGTCCGTTATTTATGATGATGTG 59.819 44.000 0.00 0.00 0.00 3.21
4940 6568 5.313712 GGGGTCCGTTATTTATGATGATGT 58.686 41.667 0.00 0.00 0.00 3.06
4941 6569 4.391830 CGGGGTCCGTTATTTATGATGATG 59.608 45.833 0.00 0.00 42.73 3.07
4942 6570 4.575885 CGGGGTCCGTTATTTATGATGAT 58.424 43.478 0.00 0.00 42.73 2.45
4943 6571 3.997762 CGGGGTCCGTTATTTATGATGA 58.002 45.455 0.00 0.00 42.73 2.92
4991 6627 1.787012 GCTGTGGGCAAACAATCTTG 58.213 50.000 0.00 0.00 41.35 3.02
5054 6690 2.700773 GCCTGTTCCATCGGCCAAC 61.701 63.158 2.24 0.00 37.86 3.77
5057 6693 2.825836 CTGCCTGTTCCATCGGCC 60.826 66.667 0.00 0.00 43.12 6.13
5063 6709 1.220749 GGTATCGCTGCCTGTTCCA 59.779 57.895 0.00 0.00 0.00 3.53
5099 6745 3.170672 CGAGGGCCATGGGATCCA 61.171 66.667 15.13 0.00 38.19 3.41
5212 6874 0.315220 GCTCGTGCTCGTACGTAGAG 60.315 60.000 16.05 16.64 44.06 2.43
5213 6875 1.712081 GCTCGTGCTCGTACGTAGA 59.288 57.895 16.05 7.76 44.06 2.59
5214 6876 1.647577 CGCTCGTGCTCGTACGTAG 60.648 63.158 16.05 12.17 44.06 3.51
5232 6894 0.110644 CTTGGTTTTCTCGTGCTCGC 60.111 55.000 2.69 0.00 36.96 5.03
5378 7049 1.870055 TACTGAAGTGGACGTCCGGC 61.870 60.000 28.70 22.87 39.43 6.13
5379 7050 0.170561 CTACTGAAGTGGACGTCCGG 59.829 60.000 28.70 15.84 39.43 5.14
5384 7055 0.039437 ACGTGCTACTGAAGTGGACG 60.039 55.000 18.00 18.00 41.95 4.79
5404 7075 1.654954 CTACCCGAGCTGCACGTACT 61.655 60.000 17.58 2.92 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.