Multiple sequence alignment - TraesCS3B01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G402100 chr3B 100.000 6422 0 0 1 6422 636743846 636737425 0.000000e+00 11860.0
1 TraesCS3B01G402100 chr3B 84.239 552 58 12 21 548 127024023 127024569 1.600000e-140 510.0
2 TraesCS3B01G402100 chr3B 100.000 60 0 0 485 544 636743303 636743244 1.890000e-20 111.0
3 TraesCS3B01G402100 chr3A 95.480 2699 88 20 1464 4144 620997976 620995294 0.000000e+00 4277.0
4 TraesCS3B01G402100 chr3A 91.020 1314 65 22 5090 6371 620994533 620993241 0.000000e+00 1724.0
5 TraesCS3B01G402100 chr3A 95.745 752 27 4 4230 4979 620995295 620994547 0.000000e+00 1206.0
6 TraesCS3B01G402100 chr3A 91.683 517 30 9 957 1467 620998912 620998403 0.000000e+00 704.0
7 TraesCS3B01G402100 chr3A 91.875 160 5 3 790 944 620999052 620998896 3.900000e-52 217.0
8 TraesCS3B01G402100 chr3A 78.281 221 35 13 46 259 185087414 185087200 5.230000e-26 130.0
9 TraesCS3B01G402100 chr3D 95.537 2689 89 19 1464 4144 477452724 477450059 0.000000e+00 4272.0
10 TraesCS3B01G402100 chr3D 96.821 755 20 4 4229 4980 477450061 477449308 0.000000e+00 1258.0
11 TraesCS3B01G402100 chr3D 90.401 698 46 15 5090 5782 477449296 477448615 0.000000e+00 898.0
12 TraesCS3B01G402100 chr3D 90.108 465 32 8 5904 6366 477448542 477448090 5.540000e-165 592.0
13 TraesCS3B01G402100 chr3D 88.918 379 32 7 1096 1467 477453405 477453030 5.870000e-125 459.0
14 TraesCS3B01G402100 chr3D 89.453 256 10 11 773 1021 477454080 477453835 2.250000e-79 307.0
15 TraesCS3B01G402100 chr3D 88.957 163 5 5 784 938 477453829 477453672 8.500000e-44 189.0
16 TraesCS3B01G402100 chr3D 91.892 111 4 3 4131 4239 434026478 434026371 4.010000e-32 150.0
17 TraesCS3B01G402100 chr3D 91.379 58 5 0 4973 5030 559116865 559116922 5.340000e-11 80.5
18 TraesCS3B01G402100 chr7B 98.165 545 8 2 1 544 144914810 144914267 0.000000e+00 950.0
19 TraesCS3B01G402100 chr7B 87.429 525 54 12 21 540 554170634 554171151 1.540000e-165 593.0
20 TraesCS3B01G402100 chr7B 93.213 221 3 2 547 759 144914323 144914107 1.340000e-81 315.0
21 TraesCS3B01G402100 chr7B 87.981 208 17 2 544 744 737731196 737730990 8.320000e-59 239.0
22 TraesCS3B01G402100 chr7B 87.500 208 18 2 544 744 737713453 737713247 3.870000e-57 233.0
23 TraesCS3B01G402100 chr7B 87.019 208 19 2 544 744 737616360 737616154 1.800000e-55 228.0
24 TraesCS3B01G402100 chr7B 86.538 208 20 2 544 744 737599018 737598812 8.380000e-54 222.0
25 TraesCS3B01G402100 chr7B 84.971 173 18 2 544 709 737633981 737633810 1.110000e-37 169.0
26 TraesCS3B01G402100 chr7B 84.337 166 22 3 550 713 10056983 10056820 6.660000e-35 159.0
27 TraesCS3B01G402100 chr7D 88.571 525 50 8 25 544 1848908 1849427 4.230000e-176 628.0
28 TraesCS3B01G402100 chr7D 94.000 100 3 1 4135 4234 538028545 538028641 1.440000e-31 148.0
29 TraesCS3B01G402100 chr7D 74.324 222 35 16 132 347 569404265 569404470 2.480000e-09 75.0
30 TraesCS3B01G402100 chr1B 86.000 550 47 14 21 544 85286905 85287450 4.350000e-156 562.0
31 TraesCS3B01G402100 chr1B 83.010 206 20 4 554 759 484265881 484266071 8.560000e-39 172.0
32 TraesCS3B01G402100 chrUn 82.639 576 42 22 1 544 79675287 79675836 2.110000e-124 457.0
33 TraesCS3B01G402100 chrUn 85.281 231 17 7 541 759 79675772 79675997 8.380000e-54 222.0
34 TraesCS3B01G402100 chrUn 91.262 103 5 1 657 759 131412828 131412730 3.120000e-28 137.0
35 TraesCS3B01G402100 chrUn 100.000 28 0 0 1699 1726 335765170 335765197 1.200000e-02 52.8
36 TraesCS3B01G402100 chr2D 88.095 210 19 3 550 759 461295072 461295275 1.790000e-60 244.0
37 TraesCS3B01G402100 chr2D 100.000 28 0 0 1699 1726 17068440 17068413 1.200000e-02 52.8
38 TraesCS3B01G402100 chr2D 100.000 28 0 0 1701 1728 430457291 430457318 1.200000e-02 52.8
39 TraesCS3B01G402100 chr6B 88.350 206 15 5 560 763 29279212 29279014 8.320000e-59 239.0
40 TraesCS3B01G402100 chr6B 77.395 261 41 15 46 298 527338992 527339242 8.680000e-29 139.0
41 TraesCS3B01G402100 chr6B 100.000 28 0 0 1701 1728 147708677 147708704 1.200000e-02 52.8
42 TraesCS3B01G402100 chr4B 96.000 100 0 2 4143 4241 221059791 221059695 6.660000e-35 159.0
43 TraesCS3B01G402100 chr4B 100.000 28 0 0 1699 1726 17912237 17912264 1.200000e-02 52.8
44 TraesCS3B01G402100 chr7A 94.949 99 1 3 4135 4232 80596380 80596475 1.120000e-32 152.0
45 TraesCS3B01G402100 chr4D 94.118 102 2 2 4138 4238 5081571 5081669 1.120000e-32 152.0
46 TraesCS3B01G402100 chr4D 93.333 60 4 0 4971 5030 405770425 405770484 8.870000e-14 89.8
47 TraesCS3B01G402100 chr4D 96.154 52 2 0 4979 5030 405770482 405770431 1.150000e-12 86.1
48 TraesCS3B01G402100 chr1D 93.939 99 4 1 4135 4231 444836171 444836269 1.440000e-31 148.0
49 TraesCS3B01G402100 chr1D 93.333 60 4 0 4971 5030 471827125 471827184 8.870000e-14 89.8
50 TraesCS3B01G402100 chr1D 93.220 59 3 1 4972 5030 455658313 455658256 1.150000e-12 86.1
51 TraesCS3B01G402100 chr1D 96.154 52 2 0 4979 5030 471827182 471827131 1.150000e-12 86.1
52 TraesCS3B01G402100 chr1D 100.000 28 0 0 1699 1726 365543973 365544000 1.200000e-02 52.8
53 TraesCS3B01G402100 chr1A 92.308 104 4 2 4130 4232 98602212 98602112 1.870000e-30 145.0
54 TraesCS3B01G402100 chr6A 93.000 100 3 2 4132 4231 612556342 612556437 6.710000e-30 143.0
55 TraesCS3B01G402100 chr5B 90.826 109 5 3 4142 4249 470992367 470992263 2.410000e-29 141.0
56 TraesCS3B01G402100 chr5B 91.935 62 4 1 4970 5030 677155470 677155409 1.150000e-12 86.1
57 TraesCS3B01G402100 chr5B 100.000 30 0 0 311 340 110127940 110127969 8.990000e-04 56.5
58 TraesCS3B01G402100 chr6D 91.346 104 5 1 656 759 80151971 80151872 8.680000e-29 139.0
59 TraesCS3B01G402100 chr6D 92.105 38 2 1 1690 1726 464970991 464971028 1.200000e-02 52.8
60 TraesCS3B01G402100 chr2A 91.935 62 4 1 4970 5030 726203110 726203049 1.150000e-12 86.1
61 TraesCS3B01G402100 chr2A 91.935 62 4 1 4970 5030 726214547 726214486 1.150000e-12 86.1
62 TraesCS3B01G402100 chr2A 94.444 36 2 0 1701 1736 778451645 778451680 8.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G402100 chr3B 636737425 636743846 6421 True 5985.500000 11860 100.000000 1 6422 2 chr3B.!!$R1 6421
1 TraesCS3B01G402100 chr3B 127024023 127024569 546 False 510.000000 510 84.239000 21 548 1 chr3B.!!$F1 527
2 TraesCS3B01G402100 chr3A 620993241 620999052 5811 True 1625.600000 4277 93.160600 790 6371 5 chr3A.!!$R2 5581
3 TraesCS3B01G402100 chr3D 477448090 477454080 5990 True 1139.285714 4272 91.456429 773 6366 7 chr3D.!!$R2 5593
4 TraesCS3B01G402100 chr7B 144914107 144914810 703 True 632.500000 950 95.689000 1 759 2 chr7B.!!$R7 758
5 TraesCS3B01G402100 chr7B 554170634 554171151 517 False 593.000000 593 87.429000 21 540 1 chr7B.!!$F1 519
6 TraesCS3B01G402100 chr7D 1848908 1849427 519 False 628.000000 628 88.571000 25 544 1 chr7D.!!$F1 519
7 TraesCS3B01G402100 chr1B 85286905 85287450 545 False 562.000000 562 86.000000 21 544 1 chr1B.!!$F1 523
8 TraesCS3B01G402100 chrUn 79675287 79675997 710 False 339.500000 457 83.960000 1 759 2 chrUn.!!$F2 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 896 0.106318 AGGAGCTCCCATGGCATTTC 60.106 55.0 29.54 0.0 37.41 2.17 F
1931 2879 0.035458 AGAAAGGGGTGAGCAGTTCG 59.965 55.0 0.00 0.0 0.00 3.95 F
2641 3600 0.248377 GCAGCGGCAGTTCAATGATC 60.248 55.0 3.18 0.0 40.72 2.92 F
3530 4493 2.234661 TGTATGAGCCAGTTCCTGAGTG 59.765 50.0 0.00 0.0 32.44 3.51 F
5031 6002 0.042131 TTATGGGACGGAGGGAGTGT 59.958 55.0 0.00 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 3286 0.593128 CTGAAAACGAACAGCCTGGG 59.407 55.000 0.00 0.0 0.00 4.45 R
3355 4318 1.798813 ACGCGGAGAATGACTGAAAAC 59.201 47.619 12.47 0.0 0.00 2.43 R
4202 5172 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.0 0.00 4.34 R
5055 6026 0.035036 TTGACGCCCAAACGGATGTA 59.965 50.000 0.00 0.0 37.37 2.29 R
5885 6916 0.110509 TACGCGACGACTTGACAGAC 60.111 55.000 15.93 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
512 630 8.758633 TTACTCATTTCTTGTAGTTGACTAGC 57.241 34.615 0.00 0.00 31.64 3.42
513 631 6.998802 ACTCATTTCTTGTAGTTGACTAGCT 58.001 36.000 0.00 0.00 31.64 3.32
514 632 7.445945 ACTCATTTCTTGTAGTTGACTAGCTT 58.554 34.615 0.00 0.00 31.64 3.74
515 633 8.585881 ACTCATTTCTTGTAGTTGACTAGCTTA 58.414 33.333 0.00 0.00 31.64 3.09
516 634 8.988064 TCATTTCTTGTAGTTGACTAGCTTAG 57.012 34.615 0.00 0.00 31.64 2.18
517 635 7.545965 TCATTTCTTGTAGTTGACTAGCTTAGC 59.454 37.037 0.00 0.00 31.64 3.09
518 636 5.977489 TCTTGTAGTTGACTAGCTTAGCA 57.023 39.130 7.07 0.00 31.64 3.49
519 637 6.531503 TCTTGTAGTTGACTAGCTTAGCAT 57.468 37.500 7.07 0.00 31.64 3.79
520 638 6.936279 TCTTGTAGTTGACTAGCTTAGCATT 58.064 36.000 7.07 0.00 31.64 3.56
521 639 7.386851 TCTTGTAGTTGACTAGCTTAGCATTT 58.613 34.615 7.07 0.00 31.64 2.32
522 640 7.878127 TCTTGTAGTTGACTAGCTTAGCATTTT 59.122 33.333 7.07 0.00 31.64 1.82
523 641 7.364522 TGTAGTTGACTAGCTTAGCATTTTG 57.635 36.000 7.07 0.00 0.00 2.44
524 642 5.886960 AGTTGACTAGCTTAGCATTTTGG 57.113 39.130 7.07 0.00 0.00 3.28
525 643 5.316987 AGTTGACTAGCTTAGCATTTTGGT 58.683 37.500 7.07 0.00 0.00 3.67
526 644 5.412904 AGTTGACTAGCTTAGCATTTTGGTC 59.587 40.000 7.07 3.91 0.00 4.02
527 645 5.165961 TGACTAGCTTAGCATTTTGGTCT 57.834 39.130 7.07 0.00 0.00 3.85
528 646 4.937620 TGACTAGCTTAGCATTTTGGTCTG 59.062 41.667 7.07 0.00 0.00 3.51
529 647 4.265073 ACTAGCTTAGCATTTTGGTCTGG 58.735 43.478 7.07 0.00 0.00 3.86
530 648 3.160679 AGCTTAGCATTTTGGTCTGGT 57.839 42.857 7.07 0.00 0.00 4.00
531 649 2.821969 AGCTTAGCATTTTGGTCTGGTG 59.178 45.455 7.07 0.00 0.00 4.17
532 650 2.094545 GCTTAGCATTTTGGTCTGGTGG 60.095 50.000 0.00 0.00 0.00 4.61
533 651 2.969821 TAGCATTTTGGTCTGGTGGT 57.030 45.000 0.00 0.00 0.00 4.16
534 652 2.086610 AGCATTTTGGTCTGGTGGTT 57.913 45.000 0.00 0.00 0.00 3.67
535 653 1.963515 AGCATTTTGGTCTGGTGGTTC 59.036 47.619 0.00 0.00 0.00 3.62
536 654 1.335872 GCATTTTGGTCTGGTGGTTCG 60.336 52.381 0.00 0.00 0.00 3.95
537 655 1.269448 CATTTTGGTCTGGTGGTTCGG 59.731 52.381 0.00 0.00 0.00 4.30
538 656 0.466555 TTTTGGTCTGGTGGTTCGGG 60.467 55.000 0.00 0.00 0.00 5.14
539 657 2.969300 TTTGGTCTGGTGGTTCGGGC 62.969 60.000 0.00 0.00 0.00 6.13
541 659 4.309950 GTCTGGTGGTTCGGGCGT 62.310 66.667 0.00 0.00 0.00 5.68
542 660 3.552384 TCTGGTGGTTCGGGCGTT 61.552 61.111 0.00 0.00 0.00 4.84
543 661 2.208619 TCTGGTGGTTCGGGCGTTA 61.209 57.895 0.00 0.00 0.00 3.18
544 662 1.078708 CTGGTGGTTCGGGCGTTAT 60.079 57.895 0.00 0.00 0.00 1.89
545 663 0.176219 CTGGTGGTTCGGGCGTTATA 59.824 55.000 0.00 0.00 0.00 0.98
546 664 0.831966 TGGTGGTTCGGGCGTTATAT 59.168 50.000 0.00 0.00 0.00 0.86
547 665 1.209990 TGGTGGTTCGGGCGTTATATT 59.790 47.619 0.00 0.00 0.00 1.28
548 666 2.433604 TGGTGGTTCGGGCGTTATATTA 59.566 45.455 0.00 0.00 0.00 0.98
549 667 2.802247 GGTGGTTCGGGCGTTATATTAC 59.198 50.000 0.00 0.00 0.00 1.89
550 668 3.493176 GGTGGTTCGGGCGTTATATTACT 60.493 47.826 0.00 0.00 0.00 2.24
551 669 3.737774 GTGGTTCGGGCGTTATATTACTC 59.262 47.826 0.00 0.00 0.00 2.59
552 670 3.384146 TGGTTCGGGCGTTATATTACTCA 59.616 43.478 0.00 0.00 0.00 3.41
553 671 4.039488 TGGTTCGGGCGTTATATTACTCAT 59.961 41.667 0.00 0.00 0.00 2.90
554 672 4.992951 GGTTCGGGCGTTATATTACTCATT 59.007 41.667 0.00 0.00 0.00 2.57
555 673 5.467735 GGTTCGGGCGTTATATTACTCATTT 59.532 40.000 0.00 0.00 0.00 2.32
556 674 6.347160 GGTTCGGGCGTTATATTACTCATTTC 60.347 42.308 0.00 0.00 0.00 2.17
557 675 6.092955 TCGGGCGTTATATTACTCATTTCT 57.907 37.500 0.00 0.00 0.00 2.52
558 676 6.518493 TCGGGCGTTATATTACTCATTTCTT 58.482 36.000 0.00 0.00 0.00 2.52
559 677 6.422701 TCGGGCGTTATATTACTCATTTCTTG 59.577 38.462 0.00 0.00 0.00 3.02
560 678 6.202188 CGGGCGTTATATTACTCATTTCTTGT 59.798 38.462 0.00 0.00 0.00 3.16
561 679 7.383029 CGGGCGTTATATTACTCATTTCTTGTA 59.617 37.037 0.00 0.00 0.00 2.41
562 680 8.709646 GGGCGTTATATTACTCATTTCTTGTAG 58.290 37.037 0.00 0.00 0.00 2.74
579 697 6.936279 TCTTGTAGTTGACTAGCTTAGCATT 58.064 36.000 7.07 0.00 31.64 3.56
648 766 3.848272 TCGAATCCCAGTTTTTGCATC 57.152 42.857 0.00 0.00 0.00 3.91
759 887 1.076923 GACCGACTAGGAGCTCCCA 60.077 63.158 29.54 15.79 45.00 4.37
760 888 0.468400 GACCGACTAGGAGCTCCCAT 60.468 60.000 29.54 15.02 45.00 4.00
761 889 0.757188 ACCGACTAGGAGCTCCCATG 60.757 60.000 29.54 20.48 45.00 3.66
762 890 1.467678 CCGACTAGGAGCTCCCATGG 61.468 65.000 29.54 19.22 45.00 3.66
763 891 1.751563 GACTAGGAGCTCCCATGGC 59.248 63.158 29.54 17.57 37.41 4.40
764 892 1.003442 ACTAGGAGCTCCCATGGCA 59.997 57.895 29.54 6.85 37.41 4.92
765 893 0.401105 ACTAGGAGCTCCCATGGCAT 60.401 55.000 29.54 11.45 37.41 4.40
766 894 0.769873 CTAGGAGCTCCCATGGCATT 59.230 55.000 29.54 10.66 37.41 3.56
767 895 1.144503 CTAGGAGCTCCCATGGCATTT 59.855 52.381 29.54 9.89 37.41 2.32
768 896 0.106318 AGGAGCTCCCATGGCATTTC 60.106 55.000 29.54 0.00 37.41 2.17
769 897 1.111715 GGAGCTCCCATGGCATTTCC 61.112 60.000 23.19 7.01 34.14 3.13
770 898 0.106318 GAGCTCCCATGGCATTTCCT 60.106 55.000 6.09 0.00 35.26 3.36
771 899 1.143684 GAGCTCCCATGGCATTTCCTA 59.856 52.381 6.09 0.00 35.26 2.94
782 910 5.054390 TGGCATTTCCTAAAAGCGTAAAG 57.946 39.130 0.00 0.00 35.26 1.85
896 1029 4.894705 TCGTGTAGGTTGGGCTTGTATATA 59.105 41.667 0.00 0.00 0.00 0.86
897 1030 5.541101 TCGTGTAGGTTGGGCTTGTATATAT 59.459 40.000 0.00 0.00 0.00 0.86
939 1072 1.153745 CCGCTCACTAGTCACTGCC 60.154 63.158 0.00 0.00 0.00 4.85
946 1079 4.013728 CTCACTAGTCACTGCCTCTTACT 58.986 47.826 0.00 0.00 0.00 2.24
998 1133 1.227383 GGATCGGCCAGGTTCCAAT 59.773 57.895 2.24 0.00 36.34 3.16
999 1134 0.472471 GGATCGGCCAGGTTCCAATA 59.528 55.000 2.24 0.00 36.34 1.90
1308 1798 0.188587 TCACCACCACCACTCTCTCT 59.811 55.000 0.00 0.00 0.00 3.10
1324 1814 2.503356 CTCTCTGCCTTGTAAGTCCCAT 59.497 50.000 0.00 0.00 0.00 4.00
1325 1815 2.501723 TCTCTGCCTTGTAAGTCCCATC 59.498 50.000 0.00 0.00 0.00 3.51
1327 1817 2.027192 TCTGCCTTGTAAGTCCCATCAC 60.027 50.000 0.00 0.00 0.00 3.06
1332 1822 0.611200 TGTAAGTCCCATCACCACCG 59.389 55.000 0.00 0.00 0.00 4.94
1334 1824 1.906105 TAAGTCCCATCACCACCGCC 61.906 60.000 0.00 0.00 0.00 6.13
1335 1825 4.028490 GTCCCATCACCACCGCCA 62.028 66.667 0.00 0.00 0.00 5.69
1336 1826 3.014538 TCCCATCACCACCGCCAT 61.015 61.111 0.00 0.00 0.00 4.40
1338 1828 2.829914 CCATCACCACCGCCATGG 60.830 66.667 7.63 7.63 46.10 3.66
1340 1830 1.820906 CATCACCACCGCCATGGAG 60.821 63.158 18.40 13.36 43.02 3.86
1341 1831 3.704231 ATCACCACCGCCATGGAGC 62.704 63.158 18.40 0.00 43.02 4.70
1342 1832 4.720902 CACCACCGCCATGGAGCA 62.721 66.667 18.40 0.00 43.02 4.26
1343 1833 3.965258 ACCACCGCCATGGAGCAA 61.965 61.111 18.40 0.00 43.02 3.91
1344 1834 3.136123 CCACCGCCATGGAGCAAG 61.136 66.667 18.40 1.80 43.02 4.01
1346 1836 4.431131 ACCGCCATGGAGCAAGGG 62.431 66.667 18.40 8.30 42.00 3.95
1349 1839 4.764771 GCCATGGAGCAAGGGCCA 62.765 66.667 18.40 0.00 42.56 5.36
1352 1842 0.979187 CCATGGAGCAAGGGCCATTT 60.979 55.000 5.56 0.00 42.03 2.32
1354 1844 2.109774 CATGGAGCAAGGGCCATTTTA 58.890 47.619 6.18 0.00 42.03 1.52
1355 1845 1.851304 TGGAGCAAGGGCCATTTTAG 58.149 50.000 6.18 0.00 42.56 1.85
1356 1846 1.357420 TGGAGCAAGGGCCATTTTAGA 59.643 47.619 6.18 0.00 42.56 2.10
1357 1847 2.024080 TGGAGCAAGGGCCATTTTAGAT 60.024 45.455 6.18 0.00 42.56 1.98
1359 1849 4.215109 GGAGCAAGGGCCATTTTAGATTA 58.785 43.478 6.18 0.00 42.56 1.75
1383 1876 5.954335 ACATAATGTGGTCAAGCTTTAAGC 58.046 37.500 9.18 9.18 42.84 3.09
1399 1892 6.049149 GCTTTAAGCTCCCTTCTTTGTTTTT 58.951 36.000 10.01 0.00 38.45 1.94
1401 1894 7.872993 GCTTTAAGCTCCCTTCTTTGTTTTTAT 59.127 33.333 10.01 0.00 38.45 1.40
1402 1895 9.196552 CTTTAAGCTCCCTTCTTTGTTTTTATG 57.803 33.333 0.00 0.00 32.47 1.90
1440 1934 2.502213 TATGCTACCGGATGTTGTCG 57.498 50.000 9.46 0.00 0.00 4.35
1451 1945 4.500887 CCGGATGTTGTCGTATATCAGGTT 60.501 45.833 0.00 0.00 32.49 3.50
1462 1956 7.140048 GTCGTATATCAGGTTAGTTTGGAGAG 58.860 42.308 0.00 0.00 0.00 3.20
1479 2427 4.123506 GGAGAGTGCTTAACCTTATCTGC 58.876 47.826 0.00 0.00 0.00 4.26
1532 2480 5.798125 AGATGATACAACCATCTCGACAT 57.202 39.130 0.00 0.00 45.36 3.06
1553 2501 9.400638 CGACATCTAGAAGAGGTAATTGTAATC 57.599 37.037 1.17 0.00 39.60 1.75
1570 2518 1.714794 ATCGCTTTGTTCACCTCTCG 58.285 50.000 0.00 0.00 0.00 4.04
1600 2548 3.441572 ACTGTTTCTGCCTCAACATATGC 59.558 43.478 1.58 0.00 32.50 3.14
1660 2608 4.142902 CGGCTGTACCACTTAAACTTCATG 60.143 45.833 0.00 0.00 39.03 3.07
1692 2640 3.658757 TGGCCACTTACTTTTGATTGC 57.341 42.857 0.00 0.00 0.00 3.56
1695 2643 4.830046 TGGCCACTTACTTTTGATTGCTAA 59.170 37.500 0.00 0.00 0.00 3.09
1699 2647 7.308951 GGCCACTTACTTTTGATTGCTAAGTTA 60.309 37.037 0.00 0.00 34.26 2.24
1740 2688 1.062587 AGCGTTGATAGCGAATTGTGC 59.937 47.619 0.00 0.00 40.04 4.57
1743 2691 2.694043 GTTGATAGCGAATTGTGCGAC 58.306 47.619 0.00 0.00 37.44 5.19
1789 2737 9.715121 AAATTCTAATGATGCATTTGTTGAGTT 57.285 25.926 0.00 0.00 35.54 3.01
1931 2879 0.035458 AGAAAGGGGTGAGCAGTTCG 59.965 55.000 0.00 0.00 0.00 3.95
2118 3070 2.093890 TGAACATAACTGGCCTGCATG 58.906 47.619 17.99 17.99 0.00 4.06
2334 3286 3.887621 TTATCTGGTGCAGAGTACCAC 57.112 47.619 2.73 0.00 44.08 4.16
2641 3600 0.248377 GCAGCGGCAGTTCAATGATC 60.248 55.000 3.18 0.00 40.72 2.92
3051 4011 4.337763 CTTTGCGAGCTGTTATGTTCATC 58.662 43.478 0.00 0.00 0.00 2.92
3093 4055 7.856145 ATTTAAGATTGCCTAGTCAACAGAG 57.144 36.000 0.00 0.00 0.00 3.35
3355 4318 8.117813 TGAGGCTACCTTAACTTTATTTTTGG 57.882 34.615 0.00 0.00 31.76 3.28
3530 4493 2.234661 TGTATGAGCCAGTTCCTGAGTG 59.765 50.000 0.00 0.00 32.44 3.51
3668 4631 4.283678 TGCGTATGTTGTGTAAAGCAAAC 58.716 39.130 0.00 0.00 0.00 2.93
3760 4724 9.712305 GCTACCAGCTCTTTTCTATAAATATGA 57.288 33.333 0.00 0.00 38.45 2.15
4144 5114 8.762426 CCTGTAGTTCTAGTGTTTTTCTTGTAC 58.238 37.037 0.00 0.00 0.00 2.90
4145 5115 9.530633 CTGTAGTTCTAGTGTTTTTCTTGTACT 57.469 33.333 0.00 0.00 0.00 2.73
4146 5116 9.525409 TGTAGTTCTAGTGTTTTTCTTGTACTC 57.475 33.333 0.00 0.00 0.00 2.59
4147 5117 8.976471 GTAGTTCTAGTGTTTTTCTTGTACTCC 58.024 37.037 0.00 0.00 0.00 3.85
4148 5118 6.990939 AGTTCTAGTGTTTTTCTTGTACTCCC 59.009 38.462 0.00 0.00 0.00 4.30
4149 5119 6.742559 TCTAGTGTTTTTCTTGTACTCCCT 57.257 37.500 0.00 0.00 0.00 4.20
4150 5120 6.756221 TCTAGTGTTTTTCTTGTACTCCCTC 58.244 40.000 0.00 0.00 0.00 4.30
4151 5121 4.715713 AGTGTTTTTCTTGTACTCCCTCC 58.284 43.478 0.00 0.00 0.00 4.30
4152 5122 3.497262 GTGTTTTTCTTGTACTCCCTCCG 59.503 47.826 0.00 0.00 0.00 4.63
4153 5123 3.135167 TGTTTTTCTTGTACTCCCTCCGT 59.865 43.478 0.00 0.00 0.00 4.69
4154 5124 4.132336 GTTTTTCTTGTACTCCCTCCGTT 58.868 43.478 0.00 0.00 0.00 4.44
4155 5125 3.672767 TTTCTTGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
4156 5126 2.599408 TCTTGTACTCCCTCCGTTCT 57.401 50.000 0.00 0.00 0.00 3.01
4157 5127 3.726557 TCTTGTACTCCCTCCGTTCTA 57.273 47.619 0.00 0.00 0.00 2.10
4158 5128 4.038271 TCTTGTACTCCCTCCGTTCTAA 57.962 45.455 0.00 0.00 0.00 2.10
4159 5129 4.410099 TCTTGTACTCCCTCCGTTCTAAA 58.590 43.478 0.00 0.00 0.00 1.85
4160 5130 5.021458 TCTTGTACTCCCTCCGTTCTAAAT 58.979 41.667 0.00 0.00 0.00 1.40
4161 5131 5.482878 TCTTGTACTCCCTCCGTTCTAAATT 59.517 40.000 0.00 0.00 0.00 1.82
4162 5132 6.664816 TCTTGTACTCCCTCCGTTCTAAATTA 59.335 38.462 0.00 0.00 0.00 1.40
4163 5133 6.212888 TGTACTCCCTCCGTTCTAAATTAC 57.787 41.667 0.00 0.00 0.00 1.89
4164 5134 5.954150 TGTACTCCCTCCGTTCTAAATTACT 59.046 40.000 0.00 0.00 0.00 2.24
4165 5135 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
4166 5136 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
4167 5137 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
4168 5138 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
4169 5139 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
4170 5140 4.437930 CCTCCGTTCTAAATTACTCGTCGT 60.438 45.833 0.00 0.00 0.00 4.34
4171 5141 4.406069 TCCGTTCTAAATTACTCGTCGTG 58.594 43.478 0.00 0.00 0.00 4.35
4172 5142 3.545078 CCGTTCTAAATTACTCGTCGTGG 59.455 47.826 0.00 0.00 0.00 4.94
4173 5143 4.161333 CGTTCTAAATTACTCGTCGTGGT 58.839 43.478 0.00 0.00 0.00 4.16
4174 5144 4.618489 CGTTCTAAATTACTCGTCGTGGTT 59.382 41.667 0.00 0.00 0.00 3.67
4175 5145 5.117592 CGTTCTAAATTACTCGTCGTGGTTT 59.882 40.000 0.00 0.79 0.00 3.27
4176 5146 6.346040 CGTTCTAAATTACTCGTCGTGGTTTT 60.346 38.462 0.00 0.00 0.00 2.43
4177 5147 7.148983 CGTTCTAAATTACTCGTCGTGGTTTTA 60.149 37.037 0.00 0.48 0.00 1.52
4178 5148 7.801547 TCTAAATTACTCGTCGTGGTTTTAG 57.198 36.000 13.72 13.72 31.25 1.85
4179 5149 7.370383 TCTAAATTACTCGTCGTGGTTTTAGT 58.630 34.615 16.53 6.04 31.59 2.24
4180 5150 6.849588 AAATTACTCGTCGTGGTTTTAGTT 57.150 33.333 0.00 0.00 0.00 2.24
4181 5151 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
4182 5152 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
4183 5153 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
4184 5154 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
4185 5155 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
4186 5156 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
4187 5157 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
4188 5158 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
4189 5159 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
4190 5160 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
4204 5174 8.844441 TTCAAATTTGAACTACTAAAACCACG 57.156 30.769 26.01 0.00 41.88 4.94
4205 5175 8.211116 TCAAATTTGAACTACTAAAACCACGA 57.789 30.769 18.45 0.00 33.55 4.35
4206 5176 8.124199 TCAAATTTGAACTACTAAAACCACGAC 58.876 33.333 18.45 0.00 33.55 4.34
4207 5177 5.640218 TTTGAACTACTAAAACCACGACG 57.360 39.130 0.00 0.00 0.00 5.12
4208 5178 4.566545 TGAACTACTAAAACCACGACGA 57.433 40.909 0.00 0.00 0.00 4.20
4209 5179 4.539870 TGAACTACTAAAACCACGACGAG 58.460 43.478 0.00 0.00 0.00 4.18
4210 5180 4.036734 TGAACTACTAAAACCACGACGAGT 59.963 41.667 0.00 0.00 0.00 4.18
4211 5181 5.238432 TGAACTACTAAAACCACGACGAGTA 59.762 40.000 0.00 0.00 0.00 2.59
4212 5182 5.689383 ACTACTAAAACCACGACGAGTAA 57.311 39.130 0.00 0.00 0.00 2.24
4213 5183 6.259550 ACTACTAAAACCACGACGAGTAAT 57.740 37.500 0.00 0.00 0.00 1.89
4214 5184 6.681777 ACTACTAAAACCACGACGAGTAATT 58.318 36.000 0.00 1.08 0.00 1.40
4215 5185 7.147976 ACTACTAAAACCACGACGAGTAATTT 58.852 34.615 0.00 0.34 0.00 1.82
4216 5186 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
4217 5187 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
4218 5188 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
4219 5189 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
4220 5190 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
4221 5191 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
4222 5192 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
4223 5193 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
4224 5194 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4225 5195 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4226 5196 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4227 5197 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4228 5198 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4229 5199 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4230 5200 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4423 5394 5.458015 GTGGTTGATACTTTAGGTTTGTGC 58.542 41.667 0.00 0.00 0.00 4.57
4654 5625 3.067684 TCTAACTGGTAAGGCAAAGGC 57.932 47.619 0.00 0.00 40.13 4.35
4826 5797 5.944007 AGGTGACAAGTTGTTCTGTAACTTT 59.056 36.000 10.45 0.00 43.71 2.66
4841 5812 9.581289 TTCTGTAACTTTCCATTTATTCAAGGA 57.419 29.630 0.00 0.00 0.00 3.36
4842 5813 9.581289 TCTGTAACTTTCCATTTATTCAAGGAA 57.419 29.630 0.00 0.00 38.31 3.36
4911 5882 2.221169 GATGACTTGTTCCTGCACACA 58.779 47.619 0.00 0.00 0.00 3.72
4979 5950 6.575162 TCTTGGTTGGCTTTCTTTCTATTC 57.425 37.500 0.00 0.00 0.00 1.75
4981 5952 4.086457 TGGTTGGCTTTCTTTCTATTCCC 58.914 43.478 0.00 0.00 0.00 3.97
4982 5953 4.202673 TGGTTGGCTTTCTTTCTATTCCCT 60.203 41.667 0.00 0.00 0.00 4.20
4983 5954 4.399618 GGTTGGCTTTCTTTCTATTCCCTC 59.600 45.833 0.00 0.00 0.00 4.30
4984 5955 4.236527 TGGCTTTCTTTCTATTCCCTCC 57.763 45.455 0.00 0.00 0.00 4.30
4985 5956 3.206964 GGCTTTCTTTCTATTCCCTCCG 58.793 50.000 0.00 0.00 0.00 4.63
4988 5959 4.333095 GCTTTCTTTCTATTCCCTCCGTTC 59.667 45.833 0.00 0.00 0.00 3.95
4989 5960 4.482952 TTCTTTCTATTCCCTCCGTTCC 57.517 45.455 0.00 0.00 0.00 3.62
4990 5961 3.446968 TCTTTCTATTCCCTCCGTTCCA 58.553 45.455 0.00 0.00 0.00 3.53
4992 5963 5.213519 TCTTTCTATTCCCTCCGTTCCATA 58.786 41.667 0.00 0.00 0.00 2.74
4993 5964 5.664006 TCTTTCTATTCCCTCCGTTCCATAA 59.336 40.000 0.00 0.00 0.00 1.90
4994 5965 6.329197 TCTTTCTATTCCCTCCGTTCCATAAT 59.671 38.462 0.00 0.00 0.00 1.28
4995 5966 7.511371 TCTTTCTATTCCCTCCGTTCCATAATA 59.489 37.037 0.00 0.00 0.00 0.98
4996 5967 7.808279 TTCTATTCCCTCCGTTCCATAATAT 57.192 36.000 0.00 0.00 0.00 1.28
4997 5968 8.904648 TTCTATTCCCTCCGTTCCATAATATA 57.095 34.615 0.00 0.00 0.00 0.86
4998 5969 8.904648 TCTATTCCCTCCGTTCCATAATATAA 57.095 34.615 0.00 0.00 0.00 0.98
4999 5970 8.978472 TCTATTCCCTCCGTTCCATAATATAAG 58.022 37.037 0.00 0.00 0.00 1.73
5000 5971 7.808279 ATTCCCTCCGTTCCATAATATAAGA 57.192 36.000 0.00 0.00 0.00 2.10
5001 5972 7.621006 TTCCCTCCGTTCCATAATATAAGAA 57.379 36.000 0.00 0.00 0.00 2.52
5002 5973 7.001099 TCCCTCCGTTCCATAATATAAGAAC 57.999 40.000 5.67 5.67 36.19 3.01
5021 5992 7.941795 AAGAACGTTCTTATATTATGGGACG 57.058 36.000 35.80 9.33 45.17 4.79
5022 5993 6.453092 AGAACGTTCTTATATTATGGGACGG 58.547 40.000 24.93 1.76 32.55 4.79
5023 5994 6.266103 AGAACGTTCTTATATTATGGGACGGA 59.734 38.462 24.93 0.00 32.55 4.69
5024 5995 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
5025 5996 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
5026 5997 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
5027 5998 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
5028 5999 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5029 6000 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5030 6001 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
5031 6002 0.042131 TTATGGGACGGAGGGAGTGT 59.958 55.000 0.00 0.00 0.00 3.55
5032 6003 0.042131 TATGGGACGGAGGGAGTGTT 59.958 55.000 0.00 0.00 0.00 3.32
5033 6004 0.840722 ATGGGACGGAGGGAGTGTTT 60.841 55.000 0.00 0.00 0.00 2.83
5034 6005 1.295746 GGGACGGAGGGAGTGTTTC 59.704 63.158 0.00 0.00 0.00 2.78
5035 6006 1.080025 GGACGGAGGGAGTGTTTCG 60.080 63.158 0.00 0.00 0.00 3.46
5036 6007 1.664306 GACGGAGGGAGTGTTTCGT 59.336 57.895 0.00 0.00 0.00 3.85
5037 6008 0.883833 GACGGAGGGAGTGTTTCGTA 59.116 55.000 0.00 0.00 0.00 3.43
5038 6009 1.270550 GACGGAGGGAGTGTTTCGTAA 59.729 52.381 0.00 0.00 0.00 3.18
5039 6010 1.688197 ACGGAGGGAGTGTTTCGTAAA 59.312 47.619 0.00 0.00 0.00 2.01
5040 6011 2.301009 ACGGAGGGAGTGTTTCGTAAAT 59.699 45.455 0.00 0.00 0.00 1.40
5041 6012 3.244318 ACGGAGGGAGTGTTTCGTAAATT 60.244 43.478 0.00 0.00 0.00 1.82
5042 6013 3.749609 CGGAGGGAGTGTTTCGTAAATTT 59.250 43.478 0.00 0.00 0.00 1.82
5043 6014 4.378046 CGGAGGGAGTGTTTCGTAAATTTG 60.378 45.833 0.00 0.00 0.00 2.32
5044 6015 4.517832 GGAGGGAGTGTTTCGTAAATTTGT 59.482 41.667 0.00 0.00 0.00 2.83
5045 6016 5.009310 GGAGGGAGTGTTTCGTAAATTTGTT 59.991 40.000 0.00 0.00 0.00 2.83
5046 6017 6.205270 GGAGGGAGTGTTTCGTAAATTTGTTA 59.795 38.462 0.00 0.00 0.00 2.41
5047 6018 7.198306 AGGGAGTGTTTCGTAAATTTGTTAG 57.802 36.000 0.00 0.00 0.00 2.34
5048 6019 6.993902 AGGGAGTGTTTCGTAAATTTGTTAGA 59.006 34.615 0.00 0.00 0.00 2.10
5049 6020 7.499895 AGGGAGTGTTTCGTAAATTTGTTAGAA 59.500 33.333 0.00 0.00 0.00 2.10
5050 6021 8.130469 GGGAGTGTTTCGTAAATTTGTTAGAAA 58.870 33.333 0.00 4.82 0.00 2.52
5051 6022 8.950961 GGAGTGTTTCGTAAATTTGTTAGAAAC 58.049 33.333 21.83 21.83 44.26 2.78
5052 6023 9.712359 GAGTGTTTCGTAAATTTGTTAGAAACT 57.288 29.630 25.06 15.90 44.29 2.66
5063 6034 9.498176 AAATTTGTTAGAAACTACTACATCCGT 57.502 29.630 0.00 0.00 0.00 4.69
5064 6035 9.498176 AATTTGTTAGAAACTACTACATCCGTT 57.502 29.630 0.00 0.00 0.00 4.44
5065 6036 8.891671 TTTGTTAGAAACTACTACATCCGTTT 57.108 30.769 0.00 0.00 32.76 3.60
5066 6037 7.878477 TGTTAGAAACTACTACATCCGTTTG 57.122 36.000 0.00 0.00 30.47 2.93
5067 6038 6.869913 TGTTAGAAACTACTACATCCGTTTGG 59.130 38.462 0.00 0.00 30.47 3.28
5068 6039 4.828829 AGAAACTACTACATCCGTTTGGG 58.171 43.478 0.00 0.00 35.24 4.12
5069 6040 2.685850 ACTACTACATCCGTTTGGGC 57.314 50.000 0.00 0.00 35.24 5.36
5070 6041 1.134907 ACTACTACATCCGTTTGGGCG 60.135 52.381 0.00 0.00 35.24 6.13
5071 6042 0.896923 TACTACATCCGTTTGGGCGT 59.103 50.000 0.00 0.00 35.24 5.68
5072 6043 0.390735 ACTACATCCGTTTGGGCGTC 60.391 55.000 0.00 0.00 35.24 5.19
5073 6044 0.390603 CTACATCCGTTTGGGCGTCA 60.391 55.000 0.00 0.00 35.24 4.35
5074 6045 0.035036 TACATCCGTTTGGGCGTCAA 59.965 50.000 0.00 0.00 35.24 3.18
5075 6046 1.209127 CATCCGTTTGGGCGTCAAC 59.791 57.895 0.00 0.00 34.67 3.18
5076 6047 1.072505 ATCCGTTTGGGCGTCAACT 59.927 52.632 0.00 0.00 34.67 3.16
5077 6048 0.322322 ATCCGTTTGGGCGTCAACTA 59.678 50.000 0.00 0.00 34.67 2.24
5078 6049 0.106335 TCCGTTTGGGCGTCAACTAA 59.894 50.000 0.00 0.00 34.67 2.24
5079 6050 0.236449 CCGTTTGGGCGTCAACTAAC 59.764 55.000 0.00 0.00 34.67 2.34
5080 6051 1.223187 CGTTTGGGCGTCAACTAACT 58.777 50.000 0.00 0.00 34.67 2.24
5081 6052 1.193874 CGTTTGGGCGTCAACTAACTC 59.806 52.381 0.00 0.00 34.67 3.01
5082 6053 1.534163 GTTTGGGCGTCAACTAACTCC 59.466 52.381 0.00 0.00 34.67 3.85
5083 6054 0.320073 TTGGGCGTCAACTAACTCCG 60.320 55.000 0.00 0.00 0.00 4.63
5084 6055 1.447314 GGGCGTCAACTAACTCCGG 60.447 63.158 0.00 0.00 0.00 5.14
5085 6056 1.588082 GGCGTCAACTAACTCCGGA 59.412 57.895 2.93 2.93 0.00 5.14
5086 6057 0.735287 GGCGTCAACTAACTCCGGAC 60.735 60.000 0.00 0.00 0.00 4.79
5087 6058 0.243095 GCGTCAACTAACTCCGGACT 59.757 55.000 0.00 0.00 0.00 3.85
5088 6059 1.978542 CGTCAACTAACTCCGGACTG 58.021 55.000 0.00 0.00 0.00 3.51
5141 6115 3.647636 AGCCCATAGACTGCTCTTTAGA 58.352 45.455 0.00 0.00 0.00 2.10
5191 6165 0.472471 AAGGCCGGTCTTTTCACTCA 59.528 50.000 17.56 0.00 0.00 3.41
5322 6296 1.069636 CGTCAAGGAGCTGCAAAAGAC 60.070 52.381 8.35 8.47 0.00 3.01
5338 6312 3.788333 AAGACGCATTTTCCATCATGG 57.212 42.857 0.00 0.00 39.43 3.66
5458 6434 1.266718 CCCAGTGTGTGCATGTAACAC 59.733 52.381 20.51 20.51 46.55 3.32
5461 6437 2.577300 GTGTGTGCATGTAACACTCG 57.423 50.000 24.76 0.00 46.51 4.18
5465 6441 3.375610 TGTGTGCATGTAACACTCGTTTT 59.624 39.130 24.76 0.00 46.51 2.43
5504 6480 7.500892 ACCAACAGTTAACACATTTATGTCTGA 59.499 33.333 8.61 0.00 39.39 3.27
5583 6567 3.565902 CCGGAGGCCTCAATAATTTCTTC 59.434 47.826 33.29 10.85 46.14 2.87
5620 6607 9.503427 GTTTTGCAGTTTTCATATGATAGTACC 57.497 33.333 6.17 0.00 0.00 3.34
5693 6680 1.282382 TAGGCAACCCAACTAGTCCC 58.718 55.000 0.00 0.00 37.17 4.46
5702 6689 2.619849 CCCAACTAGTCCCTACAGTCGA 60.620 54.545 0.00 0.00 0.00 4.20
5775 6762 3.634283 GCTTTACTCCTATCTCAGCGAC 58.366 50.000 0.00 0.00 0.00 5.19
5777 6764 2.273538 TACTCCTATCTCAGCGACCC 57.726 55.000 0.00 0.00 0.00 4.46
5783 6770 1.268352 CTATCTCAGCGACCCAGTAGC 59.732 57.143 0.00 0.00 34.50 3.58
5822 6853 2.119495 TCTGGGCCTCCTGTTATTCTC 58.881 52.381 4.53 0.00 34.13 2.87
5828 6859 2.439507 GCCTCCTGTTATTCTCATCCCA 59.560 50.000 0.00 0.00 0.00 4.37
5829 6860 3.073650 GCCTCCTGTTATTCTCATCCCAT 59.926 47.826 0.00 0.00 0.00 4.00
5830 6861 4.649692 CCTCCTGTTATTCTCATCCCATG 58.350 47.826 0.00 0.00 0.00 3.66
5853 6884 1.126846 GACTCGTGGTTGCAATTCTCG 59.873 52.381 0.59 11.13 0.00 4.04
5882 6913 0.242825 GACCTGTGTCGGTTGATCGA 59.757 55.000 0.00 0.00 37.42 3.59
5883 6914 0.895530 ACCTGTGTCGGTTGATCGAT 59.104 50.000 0.00 0.00 41.40 3.59
5884 6915 1.135083 ACCTGTGTCGGTTGATCGATC 60.135 52.381 18.72 18.72 41.40 3.69
5885 6916 1.191944 CTGTGTCGGTTGATCGATCG 58.808 55.000 20.03 9.36 41.40 3.69
5899 6930 1.128136 TCGATCGTCTGTCAAGTCGTC 59.872 52.381 15.94 0.00 36.51 4.20
5902 6933 2.418333 CGTCTGTCAAGTCGTCGCG 61.418 63.158 0.00 0.00 31.45 5.87
5944 6975 4.832823 CCAAATTTAGTTCAGGAAGGTGGT 59.167 41.667 0.00 0.00 0.00 4.16
6038 7081 3.945346 ACTTTATTGGTGGCATCGTACA 58.055 40.909 0.00 0.00 0.00 2.90
6039 7082 3.938963 ACTTTATTGGTGGCATCGTACAG 59.061 43.478 0.00 0.00 0.00 2.74
6040 7083 3.620427 TTATTGGTGGCATCGTACAGT 57.380 42.857 0.00 0.00 0.00 3.55
6041 7084 4.739587 TTATTGGTGGCATCGTACAGTA 57.260 40.909 0.00 0.00 0.00 2.74
6042 7085 2.373540 TTGGTGGCATCGTACAGTAC 57.626 50.000 0.00 0.00 0.00 2.73
6087 7130 2.365582 GGGAATGGCAAACGTATGACT 58.634 47.619 0.00 0.00 0.00 3.41
6090 7133 4.439057 GGAATGGCAAACGTATGACTAGA 58.561 43.478 0.00 0.00 0.00 2.43
6109 7152 3.017442 AGACTGCAGATTAGCACGAGTA 58.983 45.455 23.35 0.00 40.11 2.59
6112 7155 2.359214 CTGCAGATTAGCACGAGTAGGA 59.641 50.000 8.42 0.00 40.11 2.94
6115 7158 3.243569 GCAGATTAGCACGAGTAGGATGT 60.244 47.826 0.00 0.00 0.00 3.06
6129 7172 6.319048 AGTAGGATGTCCTCATTTCATTGT 57.681 37.500 4.51 0.00 44.77 2.71
6194 7237 0.319813 GCAAGGCCAACATGTTCCAC 60.320 55.000 16.36 6.89 0.00 4.02
6212 7255 4.295870 TCCACTTCGATCGATTTAATCCG 58.704 43.478 20.18 0.00 0.00 4.18
6218 7261 3.067040 TCGATCGATTTAATCCGGTCACA 59.933 43.478 15.15 0.00 35.82 3.58
6220 7263 3.596310 TCGATTTAATCCGGTCACACA 57.404 42.857 0.00 0.00 0.00 3.72
6234 7277 0.536233 CACACATCCCCGGTGTTTCA 60.536 55.000 0.00 0.00 46.75 2.69
6240 7283 2.483014 TCCCCGGTGTTTCATTACAG 57.517 50.000 0.00 0.00 0.00 2.74
6286 7329 6.860539 CCATTTGATGTCTCTACTATCGTCAG 59.139 42.308 0.00 0.00 0.00 3.51
6320 7363 3.932545 TGTTCACTTGTTGCTGTTGTT 57.067 38.095 0.00 0.00 0.00 2.83
6324 7367 3.023119 TCACTTGTTGCTGTTGTTGGAT 58.977 40.909 0.00 0.00 0.00 3.41
6325 7368 3.446873 TCACTTGTTGCTGTTGTTGGATT 59.553 39.130 0.00 0.00 0.00 3.01
6327 7370 3.446873 ACTTGTTGCTGTTGTTGGATTCA 59.553 39.130 0.00 0.00 0.00 2.57
6328 7371 3.713858 TGTTGCTGTTGTTGGATTCAG 57.286 42.857 0.00 0.00 0.00 3.02
6352 7395 4.349663 TTTTTGAGTGAGTTGTTGGACG 57.650 40.909 0.00 0.00 0.00 4.79
6371 7416 2.478894 ACGGTTTCATTGTTCGCACTAG 59.521 45.455 0.00 0.00 0.00 2.57
6372 7417 2.478894 CGGTTTCATTGTTCGCACTAGT 59.521 45.455 0.00 0.00 0.00 2.57
6373 7418 3.676172 CGGTTTCATTGTTCGCACTAGTA 59.324 43.478 0.00 0.00 0.00 1.82
6374 7419 4.201589 CGGTTTCATTGTTCGCACTAGTAG 60.202 45.833 0.00 0.00 0.00 2.57
6375 7420 4.927425 GGTTTCATTGTTCGCACTAGTAGA 59.073 41.667 3.59 0.00 0.00 2.59
6376 7421 5.581085 GGTTTCATTGTTCGCACTAGTAGAT 59.419 40.000 3.59 0.00 0.00 1.98
6377 7422 6.455646 GGTTTCATTGTTCGCACTAGTAGATG 60.456 42.308 3.59 0.00 0.00 2.90
6378 7423 4.112634 TCATTGTTCGCACTAGTAGATGC 58.887 43.478 3.59 9.10 38.52 3.91
6379 7424 2.579207 TGTTCGCACTAGTAGATGCC 57.421 50.000 3.59 0.00 38.69 4.40
6380 7425 1.136305 TGTTCGCACTAGTAGATGCCC 59.864 52.381 3.59 1.69 38.69 5.36
6381 7426 1.409427 GTTCGCACTAGTAGATGCCCT 59.591 52.381 3.59 0.00 38.69 5.19
6382 7427 1.032794 TCGCACTAGTAGATGCCCTG 58.967 55.000 3.59 0.00 38.69 4.45
6383 7428 1.032794 CGCACTAGTAGATGCCCTGA 58.967 55.000 3.59 0.00 38.69 3.86
6384 7429 1.615883 CGCACTAGTAGATGCCCTGAT 59.384 52.381 3.59 0.00 38.69 2.90
6385 7430 2.352225 CGCACTAGTAGATGCCCTGATC 60.352 54.545 3.59 0.00 38.69 2.92
6386 7431 2.028567 GCACTAGTAGATGCCCTGATCC 60.029 54.545 3.59 0.00 35.73 3.36
6387 7432 2.564947 CACTAGTAGATGCCCTGATCCC 59.435 54.545 3.59 0.00 0.00 3.85
6388 7433 2.180086 ACTAGTAGATGCCCTGATCCCA 59.820 50.000 3.59 0.00 0.00 4.37
6389 7434 2.196742 AGTAGATGCCCTGATCCCAA 57.803 50.000 0.00 0.00 0.00 4.12
6390 7435 2.492025 AGTAGATGCCCTGATCCCAAA 58.508 47.619 0.00 0.00 0.00 3.28
6391 7436 2.852449 AGTAGATGCCCTGATCCCAAAA 59.148 45.455 0.00 0.00 0.00 2.44
6392 7437 2.149973 AGATGCCCTGATCCCAAAAC 57.850 50.000 0.00 0.00 0.00 2.43
6393 7438 1.642762 AGATGCCCTGATCCCAAAACT 59.357 47.619 0.00 0.00 0.00 2.66
6394 7439 2.043526 AGATGCCCTGATCCCAAAACTT 59.956 45.455 0.00 0.00 0.00 2.66
6395 7440 2.397044 TGCCCTGATCCCAAAACTTT 57.603 45.000 0.00 0.00 0.00 2.66
6396 7441 3.534357 TGCCCTGATCCCAAAACTTTA 57.466 42.857 0.00 0.00 0.00 1.85
6397 7442 3.161866 TGCCCTGATCCCAAAACTTTAC 58.838 45.455 0.00 0.00 0.00 2.01
6398 7443 3.181423 TGCCCTGATCCCAAAACTTTACT 60.181 43.478 0.00 0.00 0.00 2.24
6399 7444 4.043561 TGCCCTGATCCCAAAACTTTACTA 59.956 41.667 0.00 0.00 0.00 1.82
6400 7445 5.014202 GCCCTGATCCCAAAACTTTACTAA 58.986 41.667 0.00 0.00 0.00 2.24
6401 7446 5.479027 GCCCTGATCCCAAAACTTTACTAAA 59.521 40.000 0.00 0.00 0.00 1.85
6402 7447 6.154534 GCCCTGATCCCAAAACTTTACTAAAT 59.845 38.462 0.00 0.00 0.00 1.40
6403 7448 7.310423 GCCCTGATCCCAAAACTTTACTAAATT 60.310 37.037 0.00 0.00 0.00 1.82
6404 7449 8.593679 CCCTGATCCCAAAACTTTACTAAATTT 58.406 33.333 0.00 0.00 0.00 1.82
6405 7450 9.423061 CCTGATCCCAAAACTTTACTAAATTTG 57.577 33.333 0.00 0.00 0.00 2.32
6406 7451 9.981114 CTGATCCCAAAACTTTACTAAATTTGT 57.019 29.630 0.00 0.00 30.89 2.83
6419 7464 8.584063 TTACTAAATTTGTATTCTTGACCCCC 57.416 34.615 0.00 0.00 0.00 5.40
6420 7465 6.557568 ACTAAATTTGTATTCTTGACCCCCA 58.442 36.000 0.00 0.00 0.00 4.96
6421 7466 7.013834 ACTAAATTTGTATTCTTGACCCCCAA 58.986 34.615 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 399 6.150474 TCACTGTTTTCGAAGAAAAGTTCCTT 59.850 34.615 8.04 0.00 45.90 3.36
486 604 9.372369 GCTAGTCAACTACAAGAAATGAGTAAT 57.628 33.333 0.00 0.00 0.00 1.89
504 622 5.412594 CAGACCAAAATGCTAAGCTAGTCAA 59.587 40.000 0.00 0.00 0.00 3.18
505 623 4.937620 CAGACCAAAATGCTAAGCTAGTCA 59.062 41.667 0.00 0.00 0.00 3.41
506 624 4.333926 CCAGACCAAAATGCTAAGCTAGTC 59.666 45.833 0.00 0.00 0.00 2.59
507 625 4.263506 ACCAGACCAAAATGCTAAGCTAGT 60.264 41.667 0.00 0.00 0.00 2.57
508 626 4.095483 CACCAGACCAAAATGCTAAGCTAG 59.905 45.833 0.00 0.00 0.00 3.42
509 627 4.009675 CACCAGACCAAAATGCTAAGCTA 58.990 43.478 0.00 0.00 0.00 3.32
510 628 2.821969 CACCAGACCAAAATGCTAAGCT 59.178 45.455 0.00 0.00 0.00 3.74
511 629 2.094545 CCACCAGACCAAAATGCTAAGC 60.095 50.000 0.00 0.00 0.00 3.09
512 630 3.157087 ACCACCAGACCAAAATGCTAAG 58.843 45.455 0.00 0.00 0.00 2.18
513 631 3.237268 ACCACCAGACCAAAATGCTAA 57.763 42.857 0.00 0.00 0.00 3.09
514 632 2.969821 ACCACCAGACCAAAATGCTA 57.030 45.000 0.00 0.00 0.00 3.49
515 633 1.963515 GAACCACCAGACCAAAATGCT 59.036 47.619 0.00 0.00 0.00 3.79
516 634 1.335872 CGAACCACCAGACCAAAATGC 60.336 52.381 0.00 0.00 0.00 3.56
517 635 1.269448 CCGAACCACCAGACCAAAATG 59.731 52.381 0.00 0.00 0.00 2.32
518 636 1.616159 CCGAACCACCAGACCAAAAT 58.384 50.000 0.00 0.00 0.00 1.82
519 637 0.466555 CCCGAACCACCAGACCAAAA 60.467 55.000 0.00 0.00 0.00 2.44
520 638 1.149627 CCCGAACCACCAGACCAAA 59.850 57.895 0.00 0.00 0.00 3.28
521 639 2.833227 CCCGAACCACCAGACCAA 59.167 61.111 0.00 0.00 0.00 3.67
522 640 3.948719 GCCCGAACCACCAGACCA 61.949 66.667 0.00 0.00 0.00 4.02
524 642 2.438951 TAACGCCCGAACCACCAGAC 62.439 60.000 0.00 0.00 0.00 3.51
525 643 1.546589 ATAACGCCCGAACCACCAGA 61.547 55.000 0.00 0.00 0.00 3.86
526 644 0.176219 TATAACGCCCGAACCACCAG 59.824 55.000 0.00 0.00 0.00 4.00
527 645 0.831966 ATATAACGCCCGAACCACCA 59.168 50.000 0.00 0.00 0.00 4.17
528 646 1.957668 AATATAACGCCCGAACCACC 58.042 50.000 0.00 0.00 0.00 4.61
529 647 3.721035 AGTAATATAACGCCCGAACCAC 58.279 45.455 0.00 0.00 0.00 4.16
530 648 3.384146 TGAGTAATATAACGCCCGAACCA 59.616 43.478 0.00 0.00 0.00 3.67
531 649 3.981211 TGAGTAATATAACGCCCGAACC 58.019 45.455 0.00 0.00 0.00 3.62
532 650 6.423001 AGAAATGAGTAATATAACGCCCGAAC 59.577 38.462 0.00 0.00 0.00 3.95
533 651 6.518493 AGAAATGAGTAATATAACGCCCGAA 58.482 36.000 0.00 0.00 0.00 4.30
534 652 6.092955 AGAAATGAGTAATATAACGCCCGA 57.907 37.500 0.00 0.00 0.00 5.14
535 653 6.202188 ACAAGAAATGAGTAATATAACGCCCG 59.798 38.462 0.00 0.00 0.00 6.13
536 654 7.492352 ACAAGAAATGAGTAATATAACGCCC 57.508 36.000 0.00 0.00 0.00 6.13
537 655 9.257651 ACTACAAGAAATGAGTAATATAACGCC 57.742 33.333 0.00 0.00 0.00 5.68
545 663 9.372369 GCTAGTCAACTACAAGAAATGAGTAAT 57.628 33.333 0.00 0.00 0.00 1.89
546 664 8.585881 AGCTAGTCAACTACAAGAAATGAGTAA 58.414 33.333 0.00 0.00 0.00 2.24
547 665 8.123639 AGCTAGTCAACTACAAGAAATGAGTA 57.876 34.615 0.00 0.00 0.00 2.59
548 666 6.998802 AGCTAGTCAACTACAAGAAATGAGT 58.001 36.000 0.00 0.00 0.00 3.41
549 667 7.897575 AAGCTAGTCAACTACAAGAAATGAG 57.102 36.000 0.00 0.00 0.00 2.90
550 668 7.545965 GCTAAGCTAGTCAACTACAAGAAATGA 59.454 37.037 0.00 0.00 0.00 2.57
551 669 7.331934 TGCTAAGCTAGTCAACTACAAGAAATG 59.668 37.037 0.00 0.00 0.00 2.32
552 670 7.386851 TGCTAAGCTAGTCAACTACAAGAAAT 58.613 34.615 0.00 0.00 0.00 2.17
553 671 6.755206 TGCTAAGCTAGTCAACTACAAGAAA 58.245 36.000 0.00 0.00 0.00 2.52
554 672 6.340962 TGCTAAGCTAGTCAACTACAAGAA 57.659 37.500 0.00 0.00 0.00 2.52
555 673 5.977489 TGCTAAGCTAGTCAACTACAAGA 57.023 39.130 0.00 0.00 0.00 3.02
556 674 7.602517 AAATGCTAAGCTAGTCAACTACAAG 57.397 36.000 0.00 0.00 0.00 3.16
557 675 7.094805 CCAAAATGCTAAGCTAGTCAACTACAA 60.095 37.037 0.00 0.00 0.00 2.41
558 676 6.371548 CCAAAATGCTAAGCTAGTCAACTACA 59.628 38.462 0.00 0.00 0.00 2.74
559 677 6.371825 ACCAAAATGCTAAGCTAGTCAACTAC 59.628 38.462 0.00 0.00 0.00 2.73
560 678 6.472887 ACCAAAATGCTAAGCTAGTCAACTA 58.527 36.000 0.00 0.00 0.00 2.24
561 679 5.316987 ACCAAAATGCTAAGCTAGTCAACT 58.683 37.500 0.00 0.00 0.00 3.16
562 680 5.412904 AGACCAAAATGCTAAGCTAGTCAAC 59.587 40.000 0.00 0.00 0.00 3.18
579 697 1.149627 CCCGAACCACCAGACCAAA 59.850 57.895 0.00 0.00 0.00 3.28
666 794 1.383523 GGCCCAATCGAGGAGAAAAG 58.616 55.000 0.00 0.00 0.00 2.27
740 868 2.188161 GGGAGCTCCTAGTCGGTCG 61.188 68.421 31.36 0.00 35.95 4.79
741 869 0.468400 ATGGGAGCTCCTAGTCGGTC 60.468 60.000 31.36 13.18 36.20 4.79
742 870 0.757188 CATGGGAGCTCCTAGTCGGT 60.757 60.000 31.36 8.11 36.20 4.69
743 871 1.467678 CCATGGGAGCTCCTAGTCGG 61.468 65.000 31.36 22.26 36.20 4.79
759 887 5.650543 CTTTACGCTTTTAGGAAATGCCAT 58.349 37.500 4.74 0.00 38.04 4.40
760 888 4.617298 GCTTTACGCTTTTAGGAAATGCCA 60.617 41.667 4.74 0.00 38.04 4.92
761 889 3.857665 GCTTTACGCTTTTAGGAAATGCC 59.142 43.478 4.74 0.00 38.04 4.40
795 923 3.001939 ACGAACAAGAGGTTTACGCAAAG 59.998 43.478 0.00 0.00 40.63 2.77
960 1095 2.064762 CAACGAGAAAGAGGCAGTGAG 58.935 52.381 0.00 0.00 0.00 3.51
1111 1601 4.479993 GTGCTCCAGCCCTCGCAT 62.480 66.667 0.00 0.00 41.18 4.73
1130 1620 3.869272 GCTCTGGCCAACGCGATG 61.869 66.667 15.93 12.43 35.02 3.84
1194 1684 4.922026 ACGGCGTGGAACCACACC 62.922 66.667 13.76 19.64 46.47 4.16
1242 1732 4.702081 GCGCAGTGACGGACGACT 62.702 66.667 0.30 0.00 0.00 4.18
1281 1771 1.200760 TGGTGGTGGTGAGGAGGATG 61.201 60.000 0.00 0.00 0.00 3.51
1308 1798 1.004277 GGTGATGGGACTTACAAGGCA 59.996 52.381 0.00 0.00 35.04 4.75
1324 1814 4.408821 GCTCCATGGCGGTGGTGA 62.409 66.667 6.96 0.00 40.27 4.02
1325 1815 4.720902 TGCTCCATGGCGGTGGTG 62.721 66.667 6.96 7.37 40.27 4.17
1327 1817 3.136123 CTTGCTCCATGGCGGTGG 61.136 66.667 6.96 2.54 40.76 4.61
1332 1822 4.764771 TGGCCCTTGCTCCATGGC 62.765 66.667 6.96 0.00 43.26 4.40
1334 1824 0.906775 AAAATGGCCCTTGCTCCATG 59.093 50.000 0.00 0.00 41.92 3.66
1335 1825 2.024080 TCTAAAATGGCCCTTGCTCCAT 60.024 45.455 0.00 0.00 44.46 3.41
1336 1826 1.357420 TCTAAAATGGCCCTTGCTCCA 59.643 47.619 0.00 0.00 37.74 3.86
1338 1828 5.127031 TGTTAATCTAAAATGGCCCTTGCTC 59.873 40.000 0.00 0.00 37.74 4.26
1340 1830 5.337578 TGTTAATCTAAAATGGCCCTTGC 57.662 39.130 0.00 0.00 0.00 4.01
1341 1831 9.480053 CATTATGTTAATCTAAAATGGCCCTTG 57.520 33.333 0.00 0.00 0.00 3.61
1342 1832 9.212593 ACATTATGTTAATCTAAAATGGCCCTT 57.787 29.630 0.00 0.00 0.00 3.95
1343 1833 8.641541 CACATTATGTTAATCTAAAATGGCCCT 58.358 33.333 0.00 0.00 0.00 5.19
1344 1834 7.872483 CCACATTATGTTAATCTAAAATGGCCC 59.128 37.037 0.00 0.00 0.00 5.80
1346 1836 9.463443 GACCACATTATGTTAATCTAAAATGGC 57.537 33.333 0.00 0.00 0.00 4.40
1352 1842 9.461312 AAGCTTGACCACATTATGTTAATCTAA 57.539 29.630 0.00 0.00 0.00 2.10
1354 1844 7.944729 AAGCTTGACCACATTATGTTAATCT 57.055 32.000 0.00 0.00 0.00 2.40
1357 1847 8.026607 GCTTAAAGCTTGACCACATTATGTTAA 58.973 33.333 0.00 0.00 38.45 2.01
1359 1849 6.389906 GCTTAAAGCTTGACCACATTATGTT 58.610 36.000 0.00 0.00 38.45 2.71
1383 1876 6.148811 TCGCTACATAAAAACAAAGAAGGGAG 59.851 38.462 0.00 0.00 0.00 4.30
1399 1892 7.759886 GCATATCCTTTATCACTTCGCTACATA 59.240 37.037 0.00 0.00 0.00 2.29
1401 1894 5.926542 GCATATCCTTTATCACTTCGCTACA 59.073 40.000 0.00 0.00 0.00 2.74
1402 1895 6.159988 AGCATATCCTTTATCACTTCGCTAC 58.840 40.000 0.00 0.00 0.00 3.58
1422 1916 0.535335 ACGACAACATCCGGTAGCAT 59.465 50.000 0.00 0.00 0.00 3.79
1440 1934 6.702282 GCACTCTCCAAACTAACCTGATATAC 59.298 42.308 0.00 0.00 0.00 1.47
1451 1945 5.562298 AAGGTTAAGCACTCTCCAAACTA 57.438 39.130 7.52 0.00 0.00 2.24
1462 1956 7.307455 GCATAAGTAGCAGATAAGGTTAAGCAC 60.307 40.741 7.52 0.00 0.00 4.40
1514 2462 6.561737 TCTAGATGTCGAGATGGTTGTATC 57.438 41.667 0.00 0.00 0.00 2.24
1532 2480 7.584122 AGCGATTACAATTACCTCTTCTAGA 57.416 36.000 0.00 0.00 0.00 2.43
1553 2501 1.221466 TGCGAGAGGTGAACAAAGCG 61.221 55.000 0.00 0.00 0.00 4.68
1660 2608 5.675538 AGTAAGTGGCCATAACAGAATCTC 58.324 41.667 9.72 0.00 0.00 2.75
1674 2622 6.013842 ACTTAGCAATCAAAAGTAAGTGGC 57.986 37.500 0.00 0.00 33.64 5.01
1699 2647 7.783042 ACGCTCTTATATTTCTTTACAGAGGT 58.217 34.615 0.00 0.00 0.00 3.85
1789 2737 4.127171 GTCAAGAGGTGCAAACTACAGAA 58.873 43.478 0.00 0.00 0.00 3.02
1931 2879 3.693085 AGGTGATGCACAAGATCATGAAC 59.307 43.478 4.68 0.00 35.86 3.18
2118 3070 2.555757 AGAGCCACTGCAATCTGAAAAC 59.444 45.455 0.00 0.00 41.13 2.43
2334 3286 0.593128 CTGAAAACGAACAGCCTGGG 59.407 55.000 0.00 0.00 0.00 4.45
3092 4054 3.818295 ACCTGGAGAGTACAGAAGTCT 57.182 47.619 0.00 0.00 40.80 3.24
3093 4055 3.615351 GCAACCTGGAGAGTACAGAAGTC 60.615 52.174 0.00 0.00 38.20 3.01
3271 4233 8.263940 TGACCTAGGAAATGAATTCTTTTACG 57.736 34.615 17.98 10.42 38.18 3.18
3355 4318 1.798813 ACGCGGAGAATGACTGAAAAC 59.201 47.619 12.47 0.00 0.00 2.43
3530 4493 5.541098 AGTAGCCAAATAACTAACGTTGC 57.459 39.130 11.99 1.89 34.59 4.17
3770 4734 5.812127 AGCATTTGTCCAAGTCAAACTTTTC 59.188 36.000 0.00 0.00 36.03 2.29
4144 5114 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
4145 5115 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
4146 5116 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
4147 5117 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
4148 5118 4.494764 CACGACGAGTAATTTAGAACGGAG 59.505 45.833 0.00 0.00 0.00 4.63
4149 5119 4.406069 CACGACGAGTAATTTAGAACGGA 58.594 43.478 0.00 0.00 0.00 4.69
4150 5120 3.545078 CCACGACGAGTAATTTAGAACGG 59.455 47.826 0.00 0.00 0.00 4.44
4151 5121 4.161333 ACCACGACGAGTAATTTAGAACG 58.839 43.478 0.00 0.00 0.00 3.95
4152 5122 6.457851 AAACCACGACGAGTAATTTAGAAC 57.542 37.500 0.00 0.00 0.00 3.01
4153 5123 7.867403 ACTAAAACCACGACGAGTAATTTAGAA 59.133 33.333 20.72 1.10 36.27 2.10
4154 5124 7.370383 ACTAAAACCACGACGAGTAATTTAGA 58.630 34.615 20.72 3.40 36.27 2.10
4155 5125 7.572502 ACTAAAACCACGACGAGTAATTTAG 57.427 36.000 0.00 12.05 37.40 1.85
4156 5126 7.651304 TGAACTAAAACCACGACGAGTAATTTA 59.349 33.333 0.00 1.47 0.00 1.40
4157 5127 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
4158 5128 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
4159 5129 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
4160 5130 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
4161 5131 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
4162 5132 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
4163 5133 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
4164 5134 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
4165 5135 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
4166 5136 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
4179 5149 8.675504 TCGTGGTTTTAGTAGTTCAAATTTGAA 58.324 29.630 26.01 26.01 44.31 2.69
4180 5150 8.124199 GTCGTGGTTTTAGTAGTTCAAATTTGA 58.876 33.333 16.91 16.91 34.92 2.69
4181 5151 7.111041 CGTCGTGGTTTTAGTAGTTCAAATTTG 59.889 37.037 12.15 12.15 0.00 2.32
4182 5152 7.011295 TCGTCGTGGTTTTAGTAGTTCAAATTT 59.989 33.333 0.00 0.00 0.00 1.82
4183 5153 6.479660 TCGTCGTGGTTTTAGTAGTTCAAATT 59.520 34.615 0.00 0.00 0.00 1.82
4184 5154 5.984926 TCGTCGTGGTTTTAGTAGTTCAAAT 59.015 36.000 0.00 0.00 0.00 2.32
4185 5155 5.347342 TCGTCGTGGTTTTAGTAGTTCAAA 58.653 37.500 0.00 0.00 0.00 2.69
4186 5156 4.930963 TCGTCGTGGTTTTAGTAGTTCAA 58.069 39.130 0.00 0.00 0.00 2.69
4187 5157 4.036734 ACTCGTCGTGGTTTTAGTAGTTCA 59.963 41.667 0.00 0.00 0.00 3.18
4188 5158 4.540824 ACTCGTCGTGGTTTTAGTAGTTC 58.459 43.478 0.00 0.00 0.00 3.01
4189 5159 4.574599 ACTCGTCGTGGTTTTAGTAGTT 57.425 40.909 0.00 0.00 0.00 2.24
4190 5160 5.689383 TTACTCGTCGTGGTTTTAGTAGT 57.311 39.130 0.00 0.00 0.00 2.73
4191 5161 7.411157 CCAAATTACTCGTCGTGGTTTTAGTAG 60.411 40.741 0.00 0.00 0.00 2.57
4192 5162 6.365789 CCAAATTACTCGTCGTGGTTTTAGTA 59.634 38.462 0.00 0.00 0.00 1.82
4193 5163 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
4194 5164 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
4195 5165 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
4196 5166 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
4197 5167 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
4198 5168 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
4199 5169 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
4200 5170 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
4201 5171 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
4202 5172 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
4203 5173 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4204 5174 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4205 5175 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4206 5176 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4207 5177 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4208 5178 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4209 5179 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4210 5180 5.703730 AATACTCCCTCCGTTCCAAATTA 57.296 39.130 0.00 0.00 0.00 1.40
4211 5181 4.586306 AATACTCCCTCCGTTCCAAATT 57.414 40.909 0.00 0.00 0.00 1.82
4212 5182 5.906772 ATAATACTCCCTCCGTTCCAAAT 57.093 39.130 0.00 0.00 0.00 2.32
4213 5183 5.703730 AATAATACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
4214 5184 5.703730 AAATAATACTCCCTCCGTTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
4215 5185 5.703730 AAAATAATACTCCCTCCGTTCCA 57.296 39.130 0.00 0.00 0.00 3.53
4216 5186 8.510243 TTTAAAAATAATACTCCCTCCGTTCC 57.490 34.615 0.00 0.00 0.00 3.62
4217 5187 8.127327 GCTTTAAAAATAATACTCCCTCCGTTC 58.873 37.037 0.00 0.00 0.00 3.95
4218 5188 7.612633 TGCTTTAAAAATAATACTCCCTCCGTT 59.387 33.333 0.00 0.00 0.00 4.44
4219 5189 7.114095 TGCTTTAAAAATAATACTCCCTCCGT 58.886 34.615 0.00 0.00 0.00 4.69
4220 5190 7.562454 TGCTTTAAAAATAATACTCCCTCCG 57.438 36.000 0.00 0.00 0.00 4.63
4423 5394 4.160252 ACAAATTTTCCGATGGAGGGATTG 59.840 41.667 0.00 0.00 32.58 2.67
4654 5625 5.107182 CGATGCAAGCTCAAATAGGTAGATG 60.107 44.000 0.00 0.00 33.87 2.90
4885 5856 6.484643 GTGTGCAGGAACAAGTCATCATATAT 59.515 38.462 0.00 0.00 0.00 0.86
4889 5860 2.816087 GTGTGCAGGAACAAGTCATCAT 59.184 45.455 0.00 0.00 0.00 2.45
4890 5861 2.221169 GTGTGCAGGAACAAGTCATCA 58.779 47.619 0.00 0.00 0.00 3.07
4891 5862 2.221169 TGTGTGCAGGAACAAGTCATC 58.779 47.619 0.00 0.00 0.00 2.92
4900 5871 2.719531 TGGTTAGTTGTGTGCAGGAA 57.280 45.000 0.00 0.00 0.00 3.36
4911 5882 2.694616 ACCCTTGGCATTGGTTAGTT 57.305 45.000 2.82 0.00 0.00 2.24
4998 5969 6.266103 TCCGTCCCATAATATAAGAACGTTCT 59.734 38.462 24.93 24.93 39.74 3.01
4999 5970 6.449698 TCCGTCCCATAATATAAGAACGTTC 58.550 40.000 20.71 20.71 0.00 3.95
5000 5971 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
5001 5972 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
5002 5973 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
5003 5974 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
5004 5975 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
5005 5976 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5006 5977 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5007 5978 4.775780 CACTCCCTCCGTCCCATAATATAA 59.224 45.833 0.00 0.00 0.00 0.98
5008 5979 4.202749 ACACTCCCTCCGTCCCATAATATA 60.203 45.833 0.00 0.00 0.00 0.86
5009 5980 3.173965 CACTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
5010 5981 2.090943 ACACTCCCTCCGTCCCATAATA 60.091 50.000 0.00 0.00 0.00 0.98
5011 5982 1.344087 ACACTCCCTCCGTCCCATAAT 60.344 52.381 0.00 0.00 0.00 1.28
5012 5983 0.042131 ACACTCCCTCCGTCCCATAA 59.958 55.000 0.00 0.00 0.00 1.90
5013 5984 0.042131 AACACTCCCTCCGTCCCATA 59.958 55.000 0.00 0.00 0.00 2.74
5014 5985 0.840722 AAACACTCCCTCCGTCCCAT 60.841 55.000 0.00 0.00 0.00 4.00
5015 5986 1.460689 AAACACTCCCTCCGTCCCA 60.461 57.895 0.00 0.00 0.00 4.37
5016 5987 1.295746 GAAACACTCCCTCCGTCCC 59.704 63.158 0.00 0.00 0.00 4.46
5017 5988 1.080025 CGAAACACTCCCTCCGTCC 60.080 63.158 0.00 0.00 0.00 4.79
5018 5989 0.883833 TACGAAACACTCCCTCCGTC 59.116 55.000 0.00 0.00 0.00 4.79
5019 5990 1.331214 TTACGAAACACTCCCTCCGT 58.669 50.000 0.00 0.00 0.00 4.69
5020 5991 2.443887 TTTACGAAACACTCCCTCCG 57.556 50.000 0.00 0.00 0.00 4.63
5021 5992 4.517832 ACAAATTTACGAAACACTCCCTCC 59.482 41.667 0.00 0.00 0.00 4.30
5022 5993 5.684550 ACAAATTTACGAAACACTCCCTC 57.315 39.130 0.00 0.00 0.00 4.30
5023 5994 6.993902 TCTAACAAATTTACGAAACACTCCCT 59.006 34.615 0.00 0.00 0.00 4.20
5024 5995 7.193377 TCTAACAAATTTACGAAACACTCCC 57.807 36.000 0.00 0.00 0.00 4.30
5025 5996 8.950961 GTTTCTAACAAATTTACGAAACACTCC 58.049 33.333 18.66 3.14 39.71 3.85
5026 5997 9.712359 AGTTTCTAACAAATTTACGAAACACTC 57.288 29.630 22.08 7.80 41.38 3.51
5037 6008 9.498176 ACGGATGTAGTAGTTTCTAACAAATTT 57.502 29.630 0.00 0.00 0.00 1.82
5038 6009 9.498176 AACGGATGTAGTAGTTTCTAACAAATT 57.502 29.630 0.00 0.00 0.00 1.82
5039 6010 9.498176 AAACGGATGTAGTAGTTTCTAACAAAT 57.502 29.630 0.00 0.00 32.05 2.32
5040 6011 8.767085 CAAACGGATGTAGTAGTTTCTAACAAA 58.233 33.333 0.00 0.00 34.97 2.83
5041 6012 7.385752 CCAAACGGATGTAGTAGTTTCTAACAA 59.614 37.037 0.00 0.00 34.97 2.83
5042 6013 6.869913 CCAAACGGATGTAGTAGTTTCTAACA 59.130 38.462 0.00 0.00 34.97 2.41
5043 6014 6.312180 CCCAAACGGATGTAGTAGTTTCTAAC 59.688 42.308 0.00 0.00 34.97 2.34
5044 6015 6.400568 CCCAAACGGATGTAGTAGTTTCTAA 58.599 40.000 0.00 0.00 34.97 2.10
5045 6016 5.625197 GCCCAAACGGATGTAGTAGTTTCTA 60.625 44.000 0.00 0.00 34.97 2.10
5046 6017 4.828829 CCCAAACGGATGTAGTAGTTTCT 58.171 43.478 0.00 0.00 34.97 2.52
5047 6018 3.373130 GCCCAAACGGATGTAGTAGTTTC 59.627 47.826 0.00 0.00 34.97 2.78
5048 6019 3.340928 GCCCAAACGGATGTAGTAGTTT 58.659 45.455 0.00 0.00 37.29 2.66
5049 6020 2.675889 CGCCCAAACGGATGTAGTAGTT 60.676 50.000 0.00 0.00 0.00 2.24
5050 6021 1.134907 CGCCCAAACGGATGTAGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
5051 6022 1.134907 ACGCCCAAACGGATGTAGTAG 60.135 52.381 0.00 0.00 37.37 2.57
5052 6023 0.896923 ACGCCCAAACGGATGTAGTA 59.103 50.000 0.00 0.00 37.37 1.82
5053 6024 0.390735 GACGCCCAAACGGATGTAGT 60.391 55.000 0.00 0.00 37.37 2.73
5054 6025 0.390603 TGACGCCCAAACGGATGTAG 60.391 55.000 0.00 0.00 37.37 2.74
5055 6026 0.035036 TTGACGCCCAAACGGATGTA 59.965 50.000 0.00 0.00 37.37 2.29
5056 6027 1.228003 TTGACGCCCAAACGGATGT 60.228 52.632 0.00 0.00 37.37 3.06
5057 6028 1.209127 GTTGACGCCCAAACGGATG 59.791 57.895 0.00 0.00 36.36 3.51
5058 6029 0.322322 TAGTTGACGCCCAAACGGAT 59.678 50.000 0.00 0.00 36.36 4.18
5059 6030 0.106335 TTAGTTGACGCCCAAACGGA 59.894 50.000 0.00 0.00 36.36 4.69
5060 6031 0.236449 GTTAGTTGACGCCCAAACGG 59.764 55.000 0.00 0.00 36.36 4.44
5061 6032 1.193874 GAGTTAGTTGACGCCCAAACG 59.806 52.381 0.00 0.00 36.36 3.60
5062 6033 1.534163 GGAGTTAGTTGACGCCCAAAC 59.466 52.381 0.00 0.00 36.36 2.93
5063 6034 1.874739 CGGAGTTAGTTGACGCCCAAA 60.875 52.381 0.00 0.00 36.28 3.28
5064 6035 0.320073 CGGAGTTAGTTGACGCCCAA 60.320 55.000 0.00 0.00 36.28 4.12
5065 6036 1.290955 CGGAGTTAGTTGACGCCCA 59.709 57.895 0.00 0.00 36.28 5.36
5066 6037 1.447314 CCGGAGTTAGTTGACGCCC 60.447 63.158 0.00 0.00 36.28 6.13
5067 6038 0.735287 GTCCGGAGTTAGTTGACGCC 60.735 60.000 3.06 0.00 36.30 5.68
5068 6039 0.243095 AGTCCGGAGTTAGTTGACGC 59.757 55.000 3.06 0.00 0.00 5.19
5069 6040 1.538512 TCAGTCCGGAGTTAGTTGACG 59.461 52.381 9.74 0.00 0.00 4.35
5070 6041 2.094649 CCTCAGTCCGGAGTTAGTTGAC 60.095 54.545 17.32 0.00 32.91 3.18
5071 6042 2.168496 CCTCAGTCCGGAGTTAGTTGA 58.832 52.381 17.32 7.72 32.91 3.18
5072 6043 2.168496 TCCTCAGTCCGGAGTTAGTTG 58.832 52.381 17.32 3.75 32.91 3.16
5073 6044 2.599408 TCCTCAGTCCGGAGTTAGTT 57.401 50.000 17.32 0.00 32.91 2.24
5074 6045 2.225066 ACTTCCTCAGTCCGGAGTTAGT 60.225 50.000 17.32 9.84 32.91 2.24
5075 6046 2.448453 ACTTCCTCAGTCCGGAGTTAG 58.552 52.381 9.74 11.54 32.91 2.34
5076 6047 2.599408 ACTTCCTCAGTCCGGAGTTA 57.401 50.000 9.74 0.00 32.91 2.24
5077 6048 2.599408 TACTTCCTCAGTCCGGAGTT 57.401 50.000 9.74 0.00 36.88 3.01
5078 6049 2.599408 TTACTTCCTCAGTCCGGAGT 57.401 50.000 3.06 4.57 36.88 3.85
5079 6050 5.793030 AATATTACTTCCTCAGTCCGGAG 57.207 43.478 3.06 0.00 36.88 4.63
5080 6051 7.289317 ACATTAATATTACTTCCTCAGTCCGGA 59.711 37.037 0.00 0.00 36.88 5.14
5081 6052 7.442656 ACATTAATATTACTTCCTCAGTCCGG 58.557 38.462 0.00 0.00 36.88 5.14
5082 6053 8.888579 AACATTAATATTACTTCCTCAGTCCG 57.111 34.615 0.00 0.00 36.88 4.79
5177 6151 2.076863 GTGGGATGAGTGAAAAGACCG 58.923 52.381 0.00 0.00 0.00 4.79
5191 6165 5.273208 TCAGTTTTCTAGCTAGAGTGGGAT 58.727 41.667 22.19 6.52 33.21 3.85
5322 6296 1.135053 TGTGCCATGATGGAAAATGCG 60.135 47.619 17.22 0.00 40.96 4.73
5485 6461 7.172532 TCCACTGTCAGACATAAATGTGTTAAC 59.827 37.037 6.91 0.00 41.95 2.01
5504 6480 2.982488 AGTCCCTGAAGAAATCCACTGT 59.018 45.455 0.00 0.00 0.00 3.55
5568 6552 6.598064 AGGTTGTACGGAAGAAATTATTGAGG 59.402 38.462 0.00 0.00 0.00 3.86
5583 6567 2.399396 CTGCAAAACAGGTTGTACGG 57.601 50.000 0.00 0.00 43.19 4.02
5620 6607 4.572985 AACAGACATGTGATGTTTGGTG 57.427 40.909 16.59 1.76 42.85 4.17
5693 6680 2.599082 GCGTTCCTTGAATCGACTGTAG 59.401 50.000 0.00 0.00 0.00 2.74
5702 6689 2.154462 CTGTTCCAGCGTTCCTTGAAT 58.846 47.619 0.00 0.00 29.14 2.57
5775 6762 2.787473 TCCAGAAACATGCTACTGGG 57.213 50.000 23.15 7.82 46.64 4.45
5777 6764 6.917533 AGAATTTTCCAGAAACATGCTACTG 58.082 36.000 0.00 0.00 0.00 2.74
5783 6770 6.161381 CCCAGAAGAATTTTCCAGAAACATG 58.839 40.000 0.00 0.00 0.00 3.21
5828 6859 2.183478 TTGCAACCACGAGTCATCAT 57.817 45.000 0.00 0.00 0.00 2.45
5829 6860 2.183478 ATTGCAACCACGAGTCATCA 57.817 45.000 0.00 0.00 0.00 3.07
5830 6861 2.744202 AGAATTGCAACCACGAGTCATC 59.256 45.455 0.00 0.00 0.00 2.92
5853 6884 1.533338 CGACACAGGTCTACGGCATAC 60.533 57.143 0.00 0.00 42.05 2.39
5882 6913 0.454620 GCGACGACTTGACAGACGAT 60.455 55.000 0.00 0.00 40.16 3.73
5883 6914 1.082300 GCGACGACTTGACAGACGA 60.082 57.895 0.00 0.00 40.16 4.20
5884 6915 2.418333 CGCGACGACTTGACAGACG 61.418 63.158 0.00 0.00 42.92 4.18
5885 6916 0.110509 TACGCGACGACTTGACAGAC 60.111 55.000 15.93 0.00 0.00 3.51
5899 6930 3.061139 GGTCTCATTTCGAAATCTACGCG 60.061 47.826 20.31 3.53 0.00 6.01
5902 6933 6.737254 TTTGGGTCTCATTTCGAAATCTAC 57.263 37.500 20.31 16.63 0.00 2.59
6042 7085 4.245660 TCCTTTCTGAAACTGCACGATAG 58.754 43.478 0.00 0.00 46.19 2.08
6087 7130 3.017442 ACTCGTGCTAATCTGCAGTCTA 58.983 45.455 14.67 5.53 44.20 2.59
6090 7133 2.099921 CCTACTCGTGCTAATCTGCAGT 59.900 50.000 14.67 0.00 44.20 4.40
6112 7155 4.616604 CGTTGCACAATGAAATGAGGACAT 60.617 41.667 0.00 0.00 38.50 3.06
6115 7158 2.351641 GCGTTGCACAATGAAATGAGGA 60.352 45.455 6.77 0.00 0.00 3.71
6118 7161 1.684142 CGCGTTGCACAATGAAATGA 58.316 45.000 6.77 0.00 0.00 2.57
6194 7237 4.148348 GTGACCGGATTAAATCGATCGAAG 59.852 45.833 23.50 6.14 0.00 3.79
6212 7255 2.046314 CACCGGGGATGTGTGACC 60.046 66.667 6.32 0.00 31.66 4.02
6218 7261 2.040545 TGTAATGAAACACCGGGGATGT 59.959 45.455 12.96 0.00 0.00 3.06
6220 7263 2.307686 ACTGTAATGAAACACCGGGGAT 59.692 45.455 12.96 0.00 0.00 3.85
6234 7277 1.451449 TGGGGTGGTTGGACTGTAAT 58.549 50.000 0.00 0.00 0.00 1.89
6240 7283 1.830847 GGTGTTGGGGTGGTTGGAC 60.831 63.158 0.00 0.00 0.00 4.02
6286 7329 4.307443 AGTGAACAAGTAAGCCAAAAGC 57.693 40.909 0.00 0.00 44.25 3.51
6339 7382 2.404923 TGAAACCGTCCAACAACTCA 57.595 45.000 0.00 0.00 0.00 3.41
6351 7394 2.478894 ACTAGTGCGAACAATGAAACCG 59.521 45.455 0.00 0.00 0.00 4.44
6352 7395 4.927425 TCTACTAGTGCGAACAATGAAACC 59.073 41.667 5.39 0.00 0.00 3.27
6371 7416 2.952310 GTTTTGGGATCAGGGCATCTAC 59.048 50.000 0.00 0.00 0.00 2.59
6372 7417 2.852449 AGTTTTGGGATCAGGGCATCTA 59.148 45.455 0.00 0.00 0.00 1.98
6373 7418 1.642762 AGTTTTGGGATCAGGGCATCT 59.357 47.619 0.00 0.00 0.00 2.90
6374 7419 2.149973 AGTTTTGGGATCAGGGCATC 57.850 50.000 0.00 0.00 0.00 3.91
6375 7420 2.629017 AAGTTTTGGGATCAGGGCAT 57.371 45.000 0.00 0.00 0.00 4.40
6376 7421 2.397044 AAAGTTTTGGGATCAGGGCA 57.603 45.000 0.00 0.00 0.00 5.36
6377 7422 3.431415 AGTAAAGTTTTGGGATCAGGGC 58.569 45.455 0.00 0.00 0.00 5.19
6378 7423 7.718334 ATTTAGTAAAGTTTTGGGATCAGGG 57.282 36.000 1.21 0.00 0.00 4.45
6379 7424 9.423061 CAAATTTAGTAAAGTTTTGGGATCAGG 57.577 33.333 5.61 0.00 0.00 3.86
6380 7425 9.981114 ACAAATTTAGTAAAGTTTTGGGATCAG 57.019 29.630 18.93 5.19 32.85 2.90
6393 7438 9.027202 GGGGGTCAAGAATACAAATTTAGTAAA 57.973 33.333 0.00 0.00 0.00 2.01
6394 7439 8.171400 TGGGGGTCAAGAATACAAATTTAGTAA 58.829 33.333 0.00 0.00 0.00 2.24
6395 7440 7.700846 TGGGGGTCAAGAATACAAATTTAGTA 58.299 34.615 0.00 0.00 0.00 1.82
6396 7441 6.557568 TGGGGGTCAAGAATACAAATTTAGT 58.442 36.000 0.00 0.00 0.00 2.24
6397 7442 7.475137 TTGGGGGTCAAGAATACAAATTTAG 57.525 36.000 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.