Multiple sequence alignment - TraesCS3B01G401700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G401700 chr3B 100.000 3008 0 0 542 3549 636439149 636442156 0.000000e+00 5555
1 TraesCS3B01G401700 chr3B 100.000 65 0 0 1 65 636438608 636438672 1.730000e-23 121
2 TraesCS3B01G401700 chr3D 91.375 2261 121 26 542 2743 477238526 477240771 0.000000e+00 3027
3 TraesCS3B01G401700 chr3D 94.576 295 16 0 3255 3549 477241484 477241778 1.160000e-124 457
4 TraesCS3B01G401700 chr3D 95.322 171 7 1 2742 2911 217587560 217587730 1.620000e-68 270
5 TraesCS3B01G401700 chr3D 90.826 109 5 3 2928 3032 609741023 609740916 1.330000e-29 141
6 TraesCS3B01G401700 chr3A 89.377 2278 126 48 544 2743 620754068 620756307 0.000000e+00 2760
7 TraesCS3B01G401700 chr3A 94.932 296 14 1 3255 3549 620757015 620757310 2.500000e-126 462
8 TraesCS3B01G401700 chr5B 94.444 180 7 3 2738 2915 427931371 427931193 1.260000e-69 274
9 TraesCS3B01G401700 chr5B 90.826 109 7 2 2928 3035 98291171 98291277 3.690000e-30 143
10 TraesCS3B01G401700 chr6D 95.758 165 6 1 2742 2905 406391359 406391523 7.550000e-67 265
11 TraesCS3B01G401700 chr1D 93.333 180 10 2 2738 2916 238940383 238940205 7.550000e-67 265
12 TraesCS3B01G401700 chr1D 93.296 179 9 3 2737 2912 345368674 345368852 9.770000e-66 261
13 TraesCS3B01G401700 chr7D 94.675 169 8 1 2741 2908 39001450 39001282 9.770000e-66 261
14 TraesCS3B01G401700 chr5A 94.675 169 7 2 2742 2908 290391697 290391865 9.770000e-66 261
15 TraesCS3B01G401700 chr4D 91.979 187 13 2 2720 2905 13359895 13360080 9.770000e-66 261
16 TraesCS3B01G401700 chr4D 91.346 104 6 2 2928 3030 135170984 135171085 4.780000e-29 139
17 TraesCS3B01G401700 chr4A 87.168 226 19 7 2742 2959 661959597 661959820 7.610000e-62 248
18 TraesCS3B01G401700 chr2D 93.043 115 6 2 2925 3038 79387320 79387433 2.190000e-37 167
19 TraesCS3B01G401700 chr6A 91.743 109 4 2 2927 3032 511529502 511529396 2.860000e-31 147
20 TraesCS3B01G401700 chr6A 85.714 133 11 7 2925 3049 7373481 7373613 2.220000e-27 134
21 TraesCS3B01G401700 chr2B 92.308 104 7 1 2928 3030 762384793 762384690 2.860000e-31 147
22 TraesCS3B01G401700 chr2A 90.476 105 9 1 2928 3032 252088183 252088286 1.720000e-28 137
23 TraesCS3B01G401700 chr7A 88.596 114 7 3 2928 3040 323464870 323464762 2.220000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G401700 chr3B 636438608 636442156 3548 False 2838 5555 100.0000 1 3549 2 chr3B.!!$F1 3548
1 TraesCS3B01G401700 chr3D 477238526 477241778 3252 False 1742 3027 92.9755 542 3549 2 chr3D.!!$F2 3007
2 TraesCS3B01G401700 chr3A 620754068 620757310 3242 False 1611 2760 92.1545 544 3549 2 chr3A.!!$F1 3005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.108138 AGAAAACCGCTCGAGGATGG 60.108 55.0 15.58 3.68 34.73 3.51 F
20 21 0.108329 GAAAACCGCTCGAGGATGGA 60.108 55.0 15.58 0.00 34.73 3.41 F
23 24 0.108138 AACCGCTCGAGGATGGAAAG 60.108 55.0 15.58 0.00 34.73 2.62 F
25 26 0.175760 CCGCTCGAGGATGGAAAGAA 59.824 55.0 15.58 0.00 0.00 2.52 F
1153 1203 0.317799 TTCGTTAACGGGCAGTAGCA 59.682 50.0 26.51 2.11 39.51 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2067 0.028902 TATCACACGACCAGCGATCG 59.971 55.0 11.69 11.69 44.57 3.69 R
2004 2069 0.102481 GGTATCACACGACCAGCGAT 59.898 55.0 0.00 0.00 44.57 4.58 R
2177 2242 2.223377 GCACCTTCCAGTGTTTAACGAG 59.777 50.0 0.00 0.00 40.04 4.18 R
2207 2272 5.623824 GCACAAAGAAATGAAGCTGGATCAT 60.624 40.0 0.00 0.00 39.15 2.45 R
3243 3663 0.037447 AGCAGAAGGCCAAGAGTTCC 59.963 55.0 5.01 0.00 46.50 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.442996 AGAAAACCGCTCGAGGATG 57.557 52.632 15.58 0.00 34.73 3.51
19 20 0.108138 AGAAAACCGCTCGAGGATGG 60.108 55.000 15.58 3.68 34.73 3.51
20 21 0.108329 GAAAACCGCTCGAGGATGGA 60.108 55.000 15.58 0.00 34.73 3.41
21 22 0.323629 AAAACCGCTCGAGGATGGAA 59.676 50.000 15.58 0.00 34.73 3.53
22 23 0.323629 AAACCGCTCGAGGATGGAAA 59.676 50.000 15.58 0.00 34.73 3.13
23 24 0.108138 AACCGCTCGAGGATGGAAAG 60.108 55.000 15.58 0.00 34.73 2.62
24 25 0.970937 ACCGCTCGAGGATGGAAAGA 60.971 55.000 15.58 0.00 34.73 2.52
25 26 0.175760 CCGCTCGAGGATGGAAAGAA 59.824 55.000 15.58 0.00 0.00 2.52
26 27 1.405526 CCGCTCGAGGATGGAAAGAAA 60.406 52.381 15.58 0.00 0.00 2.52
27 28 2.346803 CGCTCGAGGATGGAAAGAAAA 58.653 47.619 15.58 0.00 0.00 2.29
28 29 2.939103 CGCTCGAGGATGGAAAGAAAAT 59.061 45.455 15.58 0.00 0.00 1.82
29 30 3.001736 CGCTCGAGGATGGAAAGAAAATC 59.998 47.826 15.58 0.00 0.00 2.17
30 31 3.001736 GCTCGAGGATGGAAAGAAAATCG 59.998 47.826 15.58 0.00 0.00 3.34
31 32 4.433615 CTCGAGGATGGAAAGAAAATCGA 58.566 43.478 3.91 0.00 36.60 3.59
32 33 5.023533 TCGAGGATGGAAAGAAAATCGAT 57.976 39.130 0.00 0.00 33.46 3.59
33 34 4.811024 TCGAGGATGGAAAGAAAATCGATG 59.189 41.667 0.00 0.00 33.46 3.84
34 35 4.024556 CGAGGATGGAAAGAAAATCGATGG 60.025 45.833 0.00 0.00 0.00 3.51
35 36 5.116084 AGGATGGAAAGAAAATCGATGGA 57.884 39.130 0.00 0.00 0.00 3.41
36 37 5.509498 AGGATGGAAAGAAAATCGATGGAA 58.491 37.500 0.00 0.00 0.00 3.53
37 38 5.591877 AGGATGGAAAGAAAATCGATGGAAG 59.408 40.000 0.00 0.00 0.00 3.46
38 39 5.221126 GGATGGAAAGAAAATCGATGGAAGG 60.221 44.000 0.00 0.00 0.00 3.46
39 40 4.016444 TGGAAAGAAAATCGATGGAAGGG 58.984 43.478 0.00 0.00 0.00 3.95
40 41 4.017126 GGAAAGAAAATCGATGGAAGGGT 58.983 43.478 0.00 0.00 0.00 4.34
41 42 4.142381 GGAAAGAAAATCGATGGAAGGGTG 60.142 45.833 0.00 0.00 0.00 4.61
42 43 3.004752 AGAAAATCGATGGAAGGGTGG 57.995 47.619 0.00 0.00 0.00 4.61
43 44 1.405463 GAAAATCGATGGAAGGGTGGC 59.595 52.381 0.00 0.00 0.00 5.01
44 45 0.748005 AAATCGATGGAAGGGTGGCG 60.748 55.000 0.00 0.00 0.00 5.69
45 46 2.608970 AATCGATGGAAGGGTGGCGG 62.609 60.000 0.00 0.00 0.00 6.13
46 47 4.096003 CGATGGAAGGGTGGCGGT 62.096 66.667 0.00 0.00 0.00 5.68
47 48 2.124695 GATGGAAGGGTGGCGGTC 60.125 66.667 0.00 0.00 0.00 4.79
48 49 4.096003 ATGGAAGGGTGGCGGTCG 62.096 66.667 0.00 0.00 0.00 4.79
50 51 3.384532 GGAAGGGTGGCGGTCGTA 61.385 66.667 0.00 0.00 0.00 3.43
51 52 2.183555 GAAGGGTGGCGGTCGTAG 59.816 66.667 0.00 0.00 0.00 3.51
52 53 3.366739 GAAGGGTGGCGGTCGTAGG 62.367 68.421 0.00 0.00 0.00 3.18
53 54 3.892104 AAGGGTGGCGGTCGTAGGA 62.892 63.158 0.00 0.00 0.00 2.94
54 55 3.834799 GGGTGGCGGTCGTAGGAG 61.835 72.222 0.00 0.00 0.00 3.69
55 56 2.753043 GGTGGCGGTCGTAGGAGA 60.753 66.667 0.00 0.00 0.00 3.71
56 57 2.772691 GGTGGCGGTCGTAGGAGAG 61.773 68.421 0.00 0.00 0.00 3.20
57 58 2.439701 TGGCGGTCGTAGGAGAGG 60.440 66.667 0.00 0.00 0.00 3.69
58 59 2.439883 GGCGGTCGTAGGAGAGGT 60.440 66.667 0.00 0.00 0.00 3.85
59 60 2.050934 GGCGGTCGTAGGAGAGGTT 61.051 63.158 0.00 0.00 0.00 3.50
60 61 1.139095 GCGGTCGTAGGAGAGGTTG 59.861 63.158 0.00 0.00 0.00 3.77
61 62 1.807886 CGGTCGTAGGAGAGGTTGG 59.192 63.158 0.00 0.00 0.00 3.77
62 63 0.679002 CGGTCGTAGGAGAGGTTGGA 60.679 60.000 0.00 0.00 0.00 3.53
63 64 0.816373 GGTCGTAGGAGAGGTTGGAC 59.184 60.000 0.00 0.00 0.00 4.02
64 65 0.450983 GTCGTAGGAGAGGTTGGACG 59.549 60.000 0.00 0.00 0.00 4.79
571 572 0.946221 GGCTCGCATCTGAATACCGG 60.946 60.000 0.00 0.00 0.00 5.28
591 601 2.035576 GGTAGGTCCGCAGTAAATCGAT 59.964 50.000 0.00 0.00 0.00 3.59
661 672 4.838152 GAGCGGCGGCCATCAGAA 62.838 66.667 20.71 0.00 41.24 3.02
677 689 5.105228 CCATCAGAATAGTTTTGCACCCAAT 60.105 40.000 0.00 0.00 0.00 3.16
692 716 3.255642 CACCCAATGGTAGTTGTTTGAGG 59.744 47.826 0.00 0.00 45.57 3.86
728 757 7.201938 CCCAGCAATTACCATTGTATTCTTCAT 60.202 37.037 0.00 0.00 41.84 2.57
749 778 8.684386 TTCATGGTCAGTAAAGAAAATGTACA 57.316 30.769 0.00 0.00 0.00 2.90
750 779 8.322906 TCATGGTCAGTAAAGAAAATGTACAG 57.677 34.615 0.33 0.00 0.00 2.74
751 780 8.154203 TCATGGTCAGTAAAGAAAATGTACAGA 58.846 33.333 0.33 0.00 0.00 3.41
752 781 7.962964 TGGTCAGTAAAGAAAATGTACAGAG 57.037 36.000 0.33 0.00 0.00 3.35
753 782 6.426937 TGGTCAGTAAAGAAAATGTACAGAGC 59.573 38.462 0.33 0.00 34.34 4.09
754 783 6.401153 GGTCAGTAAAGAAAATGTACAGAGCG 60.401 42.308 0.33 0.00 0.00 5.03
755 784 6.145696 GTCAGTAAAGAAAATGTACAGAGCGT 59.854 38.462 0.33 0.00 0.00 5.07
757 786 7.868922 TCAGTAAAGAAAATGTACAGAGCGTTA 59.131 33.333 0.33 0.00 0.00 3.18
758 787 8.656849 CAGTAAAGAAAATGTACAGAGCGTTAT 58.343 33.333 0.33 0.00 0.00 1.89
774 809 6.702282 AGAGCGTTATTAAATTCTCCTGCTAC 59.298 38.462 0.00 0.00 0.00 3.58
779 814 7.226720 CGTTATTAAATTCTCCTGCTACCATGT 59.773 37.037 0.00 0.00 0.00 3.21
787 822 2.840038 TCCTGCTACCATGTTCTGATGT 59.160 45.455 0.00 0.00 0.00 3.06
825 865 2.351641 CCTGCGCAAAGTTCATGCTAAA 60.352 45.455 13.05 0.00 41.64 1.85
833 882 5.870978 GCAAAGTTCATGCTAAATGGATTGT 59.129 36.000 0.00 0.00 40.64 2.71
1045 1095 0.645496 TGGGCAGGGACCTAGGATTA 59.355 55.000 17.98 0.00 0.00 1.75
1048 1098 2.716969 GGGCAGGGACCTAGGATTAATT 59.283 50.000 17.98 0.00 0.00 1.40
1101 1151 4.716794 GATCCAAGGATCTTCAGCTTCAT 58.283 43.478 19.44 0.00 45.42 2.57
1123 1173 8.141298 TCATCATCTACCCACAGTAAGTTAAA 57.859 34.615 0.00 0.00 0.00 1.52
1136 1186 9.334693 CACAGTAAGTTAAATTCTTGCATCTTC 57.665 33.333 0.00 0.00 31.71 2.87
1153 1203 0.317799 TTCGTTAACGGGCAGTAGCA 59.682 50.000 26.51 2.11 39.51 3.49
1183 1233 4.918810 TCTTTCTTTTTCAGTGAAGGGC 57.081 40.909 5.56 0.00 0.00 5.19
1237 1291 5.305644 AGGTAGAACTGAGACTTGAACACAT 59.694 40.000 0.00 0.00 0.00 3.21
1263 1326 2.861462 TCTTTTTGGTGGCTCAAACG 57.139 45.000 6.18 0.00 36.49 3.60
1331 1394 4.737353 TGTACTGCGTGGTATACTATCG 57.263 45.455 2.25 5.05 0.00 2.92
1378 1441 5.124617 TGCGAATGAGCATACTATCTAGGAG 59.875 44.000 0.00 0.00 42.92 3.69
1655 1718 2.222027 GATTTATGTCCAGGGCCGAAG 58.778 52.381 0.00 0.00 0.00 3.79
1705 1768 1.604147 TTCCCGCTGCATCTTCTCGA 61.604 55.000 0.00 0.00 0.00 4.04
1707 1770 1.153765 CCGCTGCATCTTCTCGACA 60.154 57.895 0.00 0.00 0.00 4.35
1758 1821 4.732672 AGTCTGGGGTTCGTCTATTTAC 57.267 45.455 0.00 0.00 0.00 2.01
1787 1850 0.734889 CTGATCACCGTGGATTTGCC 59.265 55.000 0.00 0.00 37.10 4.52
1804 1869 3.059352 TGCCAACCTTAAGAAGCTCTC 57.941 47.619 3.36 0.00 0.00 3.20
1805 1870 2.290323 TGCCAACCTTAAGAAGCTCTCC 60.290 50.000 3.36 0.00 0.00 3.71
1913 1978 0.389391 TGGACGAGCTAAGCATAGGC 59.611 55.000 0.00 0.00 41.61 3.93
1914 1979 0.389391 GGACGAGCTAAGCATAGGCA 59.611 55.000 0.67 0.00 44.61 4.75
2002 2067 1.686052 TCCAAACCTCACCATGTTTGC 59.314 47.619 9.07 0.00 46.21 3.68
2004 2069 1.336440 CAAACCTCACCATGTTTGCGA 59.664 47.619 2.60 0.00 43.18 5.10
2177 2242 2.799978 CCGAATTGAAACCAAGGTTTGC 59.200 45.455 21.05 12.84 46.80 3.68
2281 2351 2.126071 CACTGCTGCCATGCTTGC 60.126 61.111 0.00 0.00 0.00 4.01
2335 2405 3.244665 ACCATGCTCACAAATCTGAGACA 60.245 43.478 0.27 0.00 40.28 3.41
2364 2434 4.338118 TCCTGAAAATCGATATTGTTGGGC 59.662 41.667 0.00 0.00 0.00 5.36
2435 2505 1.539157 CCCCTGCTTTGGAAGAGTTC 58.461 55.000 0.00 0.00 0.00 3.01
2518 2588 4.935352 TGGTCAGAAAACAAATGGAAGG 57.065 40.909 0.00 0.00 0.00 3.46
2525 2595 6.099557 TCAGAAAACAAATGGAAGGTTGGATT 59.900 34.615 0.00 0.00 0.00 3.01
2617 2687 1.554617 GTGCAAATAATTGGCAGGGGT 59.445 47.619 0.00 0.00 37.02 4.95
2619 2689 3.387699 GTGCAAATAATTGGCAGGGGTAT 59.612 43.478 0.00 0.00 37.02 2.73
2683 2766 2.335729 CACGCCAATGTGCTGCAA 59.664 55.556 2.77 0.00 32.31 4.08
2725 2808 0.448990 CACATTGGAGACGCATGGTG 59.551 55.000 0.00 0.00 0.00 4.17
2739 2822 6.597672 AGACGCATGGTGTTCATAATTTCTTA 59.402 34.615 0.00 0.00 34.12 2.10
2740 2823 6.785191 ACGCATGGTGTTCATAATTTCTTAG 58.215 36.000 0.00 0.00 34.12 2.18
2741 2824 6.374333 ACGCATGGTGTTCATAATTTCTTAGT 59.626 34.615 0.00 0.00 34.12 2.24
2742 2825 7.551262 ACGCATGGTGTTCATAATTTCTTAGTA 59.449 33.333 0.00 0.00 34.12 1.82
2743 2826 7.850982 CGCATGGTGTTCATAATTTCTTAGTAC 59.149 37.037 0.00 0.00 34.12 2.73
2744 2827 8.893727 GCATGGTGTTCATAATTTCTTAGTACT 58.106 33.333 0.00 0.00 34.12 2.73
2746 2829 9.614792 ATGGTGTTCATAATTTCTTAGTACTCC 57.385 33.333 0.00 0.00 33.61 3.85
2747 2830 8.044908 TGGTGTTCATAATTTCTTAGTACTCCC 58.955 37.037 0.00 0.00 0.00 4.30
2748 2831 8.265764 GGTGTTCATAATTTCTTAGTACTCCCT 58.734 37.037 0.00 0.00 0.00 4.20
2749 2832 9.315525 GTGTTCATAATTTCTTAGTACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
2750 2833 8.483758 TGTTCATAATTTCTTAGTACTCCCTCC 58.516 37.037 0.00 0.00 0.00 4.30
2751 2834 7.286215 TCATAATTTCTTAGTACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
2752 2835 6.837568 TCATAATTTCTTAGTACTCCCTCCGT 59.162 38.462 0.00 0.00 0.00 4.69
2753 2836 7.343833 TCATAATTTCTTAGTACTCCCTCCGTT 59.656 37.037 0.00 0.00 0.00 4.44
2754 2837 5.595257 ATTTCTTAGTACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
2755 2838 3.010200 TCTTAGTACTCCCTCCGTTCC 57.990 52.381 0.00 0.00 0.00 3.62
2756 2839 2.579860 TCTTAGTACTCCCTCCGTTCCT 59.420 50.000 0.00 0.00 0.00 3.36
2757 2840 3.782523 TCTTAGTACTCCCTCCGTTCCTA 59.217 47.826 0.00 0.00 0.00 2.94
2758 2841 4.228210 TCTTAGTACTCCCTCCGTTCCTAA 59.772 45.833 0.00 0.00 0.00 2.69
2759 2842 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2760 2843 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2761 2844 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2762 2845 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2763 2846 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2764 2847 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2765 2848 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2766 2849 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2767 2850 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2768 2851 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2769 2852 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2770 2853 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2771 2854 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2772 2855 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2789 2872 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
2790 2873 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
2791 2874 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
2792 2875 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
2795 2878 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
2796 2879 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
2798 2881 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2799 2882 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
2800 2883 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
2801 2884 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
2802 2885 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
2803 2886 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
2804 2887 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
2805 2888 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
2806 2889 5.230942 ACAAGTGACTACATACAGAGCAAC 58.769 41.667 0.00 0.00 0.00 4.17
2807 2890 5.221441 ACAAGTGACTACATACAGAGCAACA 60.221 40.000 0.00 0.00 0.00 3.33
2808 2891 5.667539 AGTGACTACATACAGAGCAACAT 57.332 39.130 0.00 0.00 0.00 2.71
2809 2892 5.414360 AGTGACTACATACAGAGCAACATG 58.586 41.667 0.00 0.00 0.00 3.21
2810 2893 5.185828 AGTGACTACATACAGAGCAACATGA 59.814 40.000 0.00 0.00 0.00 3.07
2811 2894 5.518128 GTGACTACATACAGAGCAACATGAG 59.482 44.000 0.00 0.00 0.00 2.90
2812 2895 5.185828 TGACTACATACAGAGCAACATGAGT 59.814 40.000 0.00 0.00 0.00 3.41
2813 2896 5.414360 ACTACATACAGAGCAACATGAGTG 58.586 41.667 0.00 0.00 0.00 3.51
2814 2897 4.541973 ACATACAGAGCAACATGAGTGA 57.458 40.909 0.00 0.00 0.00 3.41
2815 2898 4.898320 ACATACAGAGCAACATGAGTGAA 58.102 39.130 0.00 0.00 0.00 3.18
2816 2899 5.494724 ACATACAGAGCAACATGAGTGAAT 58.505 37.500 0.00 0.00 0.00 2.57
2817 2900 5.583854 ACATACAGAGCAACATGAGTGAATC 59.416 40.000 0.00 0.00 0.00 2.52
2818 2901 4.283363 ACAGAGCAACATGAGTGAATCT 57.717 40.909 0.00 2.06 0.00 2.40
2819 2902 5.411831 ACAGAGCAACATGAGTGAATCTA 57.588 39.130 0.00 0.00 0.00 1.98
2820 2903 5.174395 ACAGAGCAACATGAGTGAATCTAC 58.826 41.667 0.00 0.00 0.00 2.59
2821 2904 5.173664 CAGAGCAACATGAGTGAATCTACA 58.826 41.667 0.00 0.00 0.00 2.74
2822 2905 5.063186 CAGAGCAACATGAGTGAATCTACAC 59.937 44.000 0.00 0.00 40.60 2.90
2857 2940 9.682465 ATGTCTATATACATCCGTATGTGTAGT 57.318 33.333 3.56 0.00 45.99 2.73
2858 2941 9.511272 TGTCTATATACATCCGTATGTGTAGTT 57.489 33.333 3.56 0.00 45.99 2.24
2859 2942 9.985318 GTCTATATACATCCGTATGTGTAGTTC 57.015 37.037 3.56 0.42 45.99 3.01
2860 2943 9.729281 TCTATATACATCCGTATGTGTAGTTCA 57.271 33.333 3.56 0.00 45.99 3.18
2864 2947 6.662414 ACATCCGTATGTGTAGTTCATTTG 57.338 37.500 0.00 0.00 44.79 2.32
2865 2948 6.403049 ACATCCGTATGTGTAGTTCATTTGA 58.597 36.000 0.00 0.00 44.79 2.69
2866 2949 6.876789 ACATCCGTATGTGTAGTTCATTTGAA 59.123 34.615 0.00 0.00 44.79 2.69
2867 2950 7.389330 ACATCCGTATGTGTAGTTCATTTGAAA 59.611 33.333 0.00 0.00 44.79 2.69
2868 2951 7.124347 TCCGTATGTGTAGTTCATTTGAAAC 57.876 36.000 0.00 0.00 35.58 2.78
2869 2952 6.148150 TCCGTATGTGTAGTTCATTTGAAACC 59.852 38.462 0.00 0.00 35.58 3.27
2870 2953 6.148811 CCGTATGTGTAGTTCATTTGAAACCT 59.851 38.462 0.00 0.00 35.58 3.50
2871 2954 7.234384 CGTATGTGTAGTTCATTTGAAACCTC 58.766 38.462 0.00 0.00 35.58 3.85
2872 2955 7.117812 CGTATGTGTAGTTCATTTGAAACCTCT 59.882 37.037 0.00 0.00 35.58 3.69
2873 2956 6.618287 TGTGTAGTTCATTTGAAACCTCTG 57.382 37.500 0.00 0.00 35.58 3.35
2874 2957 6.353323 TGTGTAGTTCATTTGAAACCTCTGA 58.647 36.000 0.00 0.00 35.58 3.27
2875 2958 6.826231 TGTGTAGTTCATTTGAAACCTCTGAA 59.174 34.615 0.00 0.00 35.58 3.02
2876 2959 7.338196 TGTGTAGTTCATTTGAAACCTCTGAAA 59.662 33.333 0.00 0.00 35.58 2.69
2877 2960 8.188139 GTGTAGTTCATTTGAAACCTCTGAAAA 58.812 33.333 0.00 0.00 35.58 2.29
2878 2961 8.405531 TGTAGTTCATTTGAAACCTCTGAAAAG 58.594 33.333 0.00 0.00 35.58 2.27
2879 2962 7.645058 AGTTCATTTGAAACCTCTGAAAAGA 57.355 32.000 0.00 0.00 35.58 2.52
2880 2963 7.484140 AGTTCATTTGAAACCTCTGAAAAGAC 58.516 34.615 0.00 0.00 35.58 3.01
2881 2964 7.122650 AGTTCATTTGAAACCTCTGAAAAGACA 59.877 33.333 0.00 0.00 35.58 3.41
2882 2965 7.403312 TCATTTGAAACCTCTGAAAAGACAA 57.597 32.000 0.00 0.00 0.00 3.18
2883 2966 7.835822 TCATTTGAAACCTCTGAAAAGACAAA 58.164 30.769 0.00 0.00 0.00 2.83
2884 2967 8.477256 TCATTTGAAACCTCTGAAAAGACAAAT 58.523 29.630 0.00 0.00 36.38 2.32
2885 2968 9.748708 CATTTGAAACCTCTGAAAAGACAAATA 57.251 29.630 0.00 0.00 34.96 1.40
2899 2982 9.556030 GAAAAGACAAATATTTAGAAACGGAGG 57.444 33.333 0.00 0.00 0.00 4.30
2900 2983 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2914 2997 7.471890 AGAAACGGAGGGAGTAATAGATAGAT 58.528 38.462 0.00 0.00 0.00 1.98
2928 3011 9.021807 GTAATAGATAGATGTGGCTGGTTAGTA 57.978 37.037 0.00 0.00 0.00 1.82
2929 3012 5.793030 AGATAGATGTGGCTGGTTAGTAC 57.207 43.478 0.00 0.00 0.00 2.73
2930 3013 5.459505 AGATAGATGTGGCTGGTTAGTACT 58.540 41.667 0.00 0.00 0.00 2.73
2931 3014 5.536916 AGATAGATGTGGCTGGTTAGTACTC 59.463 44.000 0.00 0.00 0.00 2.59
2932 3015 2.766828 AGATGTGGCTGGTTAGTACTCC 59.233 50.000 0.00 0.00 0.00 3.85
2933 3016 1.272807 TGTGGCTGGTTAGTACTCCC 58.727 55.000 0.00 1.04 0.00 4.30
2935 3018 1.481363 GTGGCTGGTTAGTACTCCCTC 59.519 57.143 0.00 0.00 0.00 4.30
2937 3020 0.745468 GCTGGTTAGTACTCCCTCCG 59.255 60.000 0.00 0.00 0.00 4.63
2940 3023 1.341383 TGGTTAGTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 0.00 4.79
2942 3025 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2943 3026 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2945 3028 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2947 3030 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2948 3031 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2950 3033 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2952 3035 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2953 3036 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2955 3038 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2957 3040 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2959 3042 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2960 3043 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2988 3071 8.440833 ACATTAGTATAAGAGCGTTTTTGACAC 58.559 33.333 0.00 0.00 0.00 3.67
2990 3073 9.865321 ATTAGTATAAGAGCGTTTTTGACACTA 57.135 29.630 0.00 0.00 0.00 2.74
2991 3074 7.578169 AGTATAAGAGCGTTTTTGACACTAC 57.422 36.000 0.00 0.00 0.00 2.73
2992 3075 7.149973 AGTATAAGAGCGTTTTTGACACTACA 58.850 34.615 0.00 0.00 0.00 2.74
2994 3077 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2996 3079 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
2997 3080 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3010 3093 4.743644 ACTACACTAGTGTCAAAAACGCTC 59.256 41.667 31.11 0.00 45.69 5.03
3013 3096 5.353938 ACACTAGTGTCAAAAACGCTCTTA 58.646 37.500 22.95 0.00 45.69 2.10
3015 3098 7.149973 ACACTAGTGTCAAAAACGCTCTTATA 58.850 34.615 22.95 0.00 45.69 0.98
3017 3100 8.656849 CACTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 15.06 0.00 45.69 1.28
3018 3101 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
3021 3104 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
3024 3107 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3026 3109 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3027 3110 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3028 3111 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3030 3113 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3044 3435 8.716674 TGGGACGGAGGGATATATTATATTAC 57.283 38.462 0.00 0.00 0.00 1.89
3045 3436 7.449395 TGGGACGGAGGGATATATTATATTACG 59.551 40.741 0.00 0.00 0.00 3.18
3058 3449 2.417339 TATTACGTCCATGCTCGAGC 57.583 50.000 30.42 30.42 42.50 5.03
3068 3459 1.023513 ATGCTCGAGCCTCAACAAGC 61.024 55.000 33.23 6.99 41.18 4.01
3077 3468 5.476945 TCGAGCCTCAACAAGCTATCATATA 59.523 40.000 0.00 0.00 40.11 0.86
3113 3505 5.277250 TGTCCAGATGACCTAGATTTACCA 58.723 41.667 0.00 0.00 43.78 3.25
3133 3525 9.965824 TTTACCATCAGATTTCTCAAAACTTTC 57.034 29.630 0.00 0.00 0.00 2.62
3147 3564 6.122277 TCAAAACTTTCATTGGAGACTGTCT 58.878 36.000 10.66 10.66 0.00 3.41
3148 3565 7.279615 TCAAAACTTTCATTGGAGACTGTCTA 58.720 34.615 10.86 0.00 0.00 2.59
3171 3588 9.529325 TCTATATTTGTCTAAAACGACATCCAG 57.471 33.333 0.00 0.00 42.91 3.86
3187 3604 6.255887 CGACATCCAGAAAAGGAACTATACAC 59.744 42.308 0.00 0.00 41.92 2.90
3196 3614 9.838339 AGAAAAGGAACTATACACCTATGATTG 57.162 33.333 0.00 0.00 38.49 2.67
3197 3615 9.614792 GAAAAGGAACTATACACCTATGATTGT 57.385 33.333 0.00 0.00 38.49 2.71
3243 3663 9.926751 CTAAATGTGCTAGTATTGAATTGTCTG 57.073 33.333 0.00 0.00 0.00 3.51
3259 3714 1.349357 GTCTGGAACTCTTGGCCTTCT 59.651 52.381 3.32 0.00 0.00 2.85
3307 3762 4.959723 TCCCTTTTGCCATTTTCTTCTTG 58.040 39.130 0.00 0.00 0.00 3.02
3314 3769 2.731451 GCCATTTTCTTCTTGGCGTTTC 59.269 45.455 0.00 0.00 45.75 2.78
3370 3825 8.579850 TGATCAGTTTTGTTGGCTCTAAATAT 57.420 30.769 0.00 0.00 0.00 1.28
3409 3865 8.589629 GTTAAGTATGTCTAACACACCAATACG 58.410 37.037 0.00 0.00 38.04 3.06
3442 3898 4.695396 TGCATTGTTTTGACTCTGCAATT 58.305 34.783 0.00 0.00 36.75 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108138 CCATCCTCGAGCGGTTTTCT 60.108 55.000 6.99 0.00 0.00 2.52
1 2 0.108329 TCCATCCTCGAGCGGTTTTC 60.108 55.000 6.99 0.00 0.00 2.29
2 3 0.323629 TTCCATCCTCGAGCGGTTTT 59.676 50.000 6.99 0.00 0.00 2.43
3 4 0.323629 TTTCCATCCTCGAGCGGTTT 59.676 50.000 6.99 0.00 0.00 3.27
4 5 0.108138 CTTTCCATCCTCGAGCGGTT 60.108 55.000 6.99 0.00 0.00 4.44
5 6 0.970937 TCTTTCCATCCTCGAGCGGT 60.971 55.000 6.99 0.00 0.00 5.68
6 7 0.175760 TTCTTTCCATCCTCGAGCGG 59.824 55.000 6.99 7.18 0.00 5.52
7 8 2.010145 TTTCTTTCCATCCTCGAGCG 57.990 50.000 6.99 0.19 0.00 5.03
8 9 3.001736 CGATTTTCTTTCCATCCTCGAGC 59.998 47.826 6.99 0.00 0.00 5.03
9 10 4.433615 TCGATTTTCTTTCCATCCTCGAG 58.566 43.478 5.13 5.13 31.13 4.04
10 11 4.465632 TCGATTTTCTTTCCATCCTCGA 57.534 40.909 0.00 0.00 0.00 4.04
11 12 4.024556 CCATCGATTTTCTTTCCATCCTCG 60.025 45.833 0.00 0.00 0.00 4.63
12 13 5.126067 TCCATCGATTTTCTTTCCATCCTC 58.874 41.667 0.00 0.00 0.00 3.71
13 14 5.116084 TCCATCGATTTTCTTTCCATCCT 57.884 39.130 0.00 0.00 0.00 3.24
14 15 5.221126 CCTTCCATCGATTTTCTTTCCATCC 60.221 44.000 0.00 0.00 0.00 3.51
15 16 5.221126 CCCTTCCATCGATTTTCTTTCCATC 60.221 44.000 0.00 0.00 0.00 3.51
16 17 4.646492 CCCTTCCATCGATTTTCTTTCCAT 59.354 41.667 0.00 0.00 0.00 3.41
17 18 4.016444 CCCTTCCATCGATTTTCTTTCCA 58.984 43.478 0.00 0.00 0.00 3.53
18 19 4.017126 ACCCTTCCATCGATTTTCTTTCC 58.983 43.478 0.00 0.00 0.00 3.13
19 20 4.142381 CCACCCTTCCATCGATTTTCTTTC 60.142 45.833 0.00 0.00 0.00 2.62
20 21 3.763897 CCACCCTTCCATCGATTTTCTTT 59.236 43.478 0.00 0.00 0.00 2.52
21 22 3.356290 CCACCCTTCCATCGATTTTCTT 58.644 45.455 0.00 0.00 0.00 2.52
22 23 2.945890 GCCACCCTTCCATCGATTTTCT 60.946 50.000 0.00 0.00 0.00 2.52
23 24 1.405463 GCCACCCTTCCATCGATTTTC 59.595 52.381 0.00 0.00 0.00 2.29
24 25 1.474330 GCCACCCTTCCATCGATTTT 58.526 50.000 0.00 0.00 0.00 1.82
25 26 0.748005 CGCCACCCTTCCATCGATTT 60.748 55.000 0.00 0.00 0.00 2.17
26 27 1.153168 CGCCACCCTTCCATCGATT 60.153 57.895 0.00 0.00 0.00 3.34
27 28 2.505982 CGCCACCCTTCCATCGAT 59.494 61.111 0.00 0.00 0.00 3.59
28 29 3.781307 CCGCCACCCTTCCATCGA 61.781 66.667 0.00 0.00 0.00 3.59
29 30 4.096003 ACCGCCACCCTTCCATCG 62.096 66.667 0.00 0.00 0.00 3.84
30 31 2.124695 GACCGCCACCCTTCCATC 60.125 66.667 0.00 0.00 0.00 3.51
31 32 4.096003 CGACCGCCACCCTTCCAT 62.096 66.667 0.00 0.00 0.00 3.41
33 34 3.366739 CTACGACCGCCACCCTTCC 62.367 68.421 0.00 0.00 0.00 3.46
34 35 2.183555 CTACGACCGCCACCCTTC 59.816 66.667 0.00 0.00 0.00 3.46
35 36 3.387947 CCTACGACCGCCACCCTT 61.388 66.667 0.00 0.00 0.00 3.95
36 37 4.371417 TCCTACGACCGCCACCCT 62.371 66.667 0.00 0.00 0.00 4.34
37 38 3.834799 CTCCTACGACCGCCACCC 61.835 72.222 0.00 0.00 0.00 4.61
38 39 2.753043 TCTCCTACGACCGCCACC 60.753 66.667 0.00 0.00 0.00 4.61
39 40 2.772691 CCTCTCCTACGACCGCCAC 61.773 68.421 0.00 0.00 0.00 5.01
40 41 2.439701 CCTCTCCTACGACCGCCA 60.440 66.667 0.00 0.00 0.00 5.69
41 42 2.050934 AACCTCTCCTACGACCGCC 61.051 63.158 0.00 0.00 0.00 6.13
42 43 1.139095 CAACCTCTCCTACGACCGC 59.861 63.158 0.00 0.00 0.00 5.68
43 44 0.679002 TCCAACCTCTCCTACGACCG 60.679 60.000 0.00 0.00 0.00 4.79
44 45 0.816373 GTCCAACCTCTCCTACGACC 59.184 60.000 0.00 0.00 0.00 4.79
45 46 0.450983 CGTCCAACCTCTCCTACGAC 59.549 60.000 0.00 0.00 32.35 4.34
46 47 2.864114 CGTCCAACCTCTCCTACGA 58.136 57.895 0.00 0.00 32.35 3.43
571 572 2.857592 TCGATTTACTGCGGACCTAC 57.142 50.000 0.00 0.00 0.00 3.18
655 666 5.105228 CCATTGGGTGCAAAACTATTCTGAT 60.105 40.000 0.00 0.00 0.00 2.90
677 689 1.477923 GCCCACCTCAAACAACTACCA 60.478 52.381 0.00 0.00 0.00 3.25
728 757 6.426937 GCTCTGTACATTTTCTTTACTGACCA 59.573 38.462 0.00 0.00 0.00 4.02
745 774 7.516943 GCAGGAGAATTTAATAACGCTCTGTAC 60.517 40.741 0.00 0.00 0.00 2.90
749 778 5.675538 AGCAGGAGAATTTAATAACGCTCT 58.324 37.500 0.00 0.00 0.00 4.09
750 779 5.993106 AGCAGGAGAATTTAATAACGCTC 57.007 39.130 0.00 0.00 0.00 5.03
751 780 5.758784 GGTAGCAGGAGAATTTAATAACGCT 59.241 40.000 0.00 0.00 0.00 5.07
752 781 5.526111 TGGTAGCAGGAGAATTTAATAACGC 59.474 40.000 0.00 0.00 0.00 4.84
753 782 7.226720 ACATGGTAGCAGGAGAATTTAATAACG 59.773 37.037 14.26 0.00 0.00 3.18
754 783 8.451908 ACATGGTAGCAGGAGAATTTAATAAC 57.548 34.615 14.26 0.00 0.00 1.89
755 784 9.120538 GAACATGGTAGCAGGAGAATTTAATAA 57.879 33.333 14.26 0.00 0.00 1.40
757 786 7.284034 CAGAACATGGTAGCAGGAGAATTTAAT 59.716 37.037 14.26 0.00 0.00 1.40
758 787 6.599244 CAGAACATGGTAGCAGGAGAATTTAA 59.401 38.462 14.26 0.00 0.00 1.52
760 789 4.946157 CAGAACATGGTAGCAGGAGAATTT 59.054 41.667 14.26 0.00 0.00 1.82
774 809 3.498397 GCCCGTAATACATCAGAACATGG 59.502 47.826 0.00 0.00 0.00 3.66
779 814 5.295787 GTCAAATGCCCGTAATACATCAGAA 59.704 40.000 0.00 0.00 0.00 3.02
825 865 8.836413 CGGTAGTTTGATTAACATACAATCCAT 58.164 33.333 0.00 0.00 39.30 3.41
833 882 5.938710 TGTTGCCGGTAGTTTGATTAACATA 59.061 36.000 1.90 0.00 39.30 2.29
987 1037 5.465724 ACTCGTTTTCATCACTGGAGTAAAC 59.534 40.000 0.00 0.00 32.00 2.01
1101 1151 8.822805 AGAATTTAACTTACTGTGGGTAGATGA 58.177 33.333 0.00 0.00 0.00 2.92
1123 1173 3.374058 CCCGTTAACGAAGATGCAAGAAT 59.626 43.478 28.79 0.00 43.02 2.40
1136 1186 1.680105 CGTGCTACTGCCCGTTAACG 61.680 60.000 20.99 20.99 35.43 3.18
1153 1203 8.827177 TCACTGAAAAAGAAAGATATACACGT 57.173 30.769 0.00 0.00 0.00 4.49
1160 1210 5.181245 CGCCCTTCACTGAAAAAGAAAGATA 59.819 40.000 0.00 0.00 0.00 1.98
1183 1233 7.539712 AATGTGTGAGGAACAAGTATTATCG 57.460 36.000 0.00 0.00 41.57 2.92
1237 1291 5.092554 TGAGCCACCAAAAAGATATCGTA 57.907 39.130 0.00 0.00 0.00 3.43
1263 1326 0.391661 TCAGCGGTTCTCCTCAATGC 60.392 55.000 0.00 0.00 0.00 3.56
1304 1367 1.552578 TACCACGCAGTACATCCTGT 58.447 50.000 0.00 0.00 41.61 4.00
1331 1394 3.174375 GGCTTCTTTCATTGTCAATCGC 58.826 45.455 0.00 0.00 0.00 4.58
1378 1441 0.827507 TTTCCAAAGCCTGCTCCACC 60.828 55.000 0.00 0.00 0.00 4.61
1514 1577 8.140112 ACTTATTCAGGTTAGATGACTTGAGT 57.860 34.615 0.00 0.00 37.03 3.41
1655 1718 0.460284 CATCTGTGTCGGTACTGCCC 60.460 60.000 0.00 0.00 0.00 5.36
1707 1770 2.430367 GCAAGAACCACCCGAGGT 59.570 61.111 0.00 0.00 45.91 3.85
1758 1821 1.222936 GGTGATCAGGAGGCAGTGG 59.777 63.158 0.00 0.00 0.00 4.00
1787 1850 3.990959 AGGGAGAGCTTCTTAAGGTTG 57.009 47.619 1.85 0.00 39.77 3.77
1804 1869 6.051717 CCTGTGACATGAACTATTTCTAGGG 58.948 44.000 0.00 0.00 32.36 3.53
1805 1870 6.051717 CCCTGTGACATGAACTATTTCTAGG 58.948 44.000 0.00 0.00 32.36 3.02
1913 1978 0.676151 GGAGCCTGCTCAGTTCCTTG 60.676 60.000 19.90 0.00 44.40 3.61
1914 1979 1.130054 TGGAGCCTGCTCAGTTCCTT 61.130 55.000 19.90 0.00 44.40 3.36
2002 2067 0.028902 TATCACACGACCAGCGATCG 59.971 55.000 11.69 11.69 44.57 3.69
2004 2069 0.102481 GGTATCACACGACCAGCGAT 59.898 55.000 0.00 0.00 44.57 4.58
2177 2242 2.223377 GCACCTTCCAGTGTTTAACGAG 59.777 50.000 0.00 0.00 40.04 4.18
2207 2272 5.623824 GCACAAAGAAATGAAGCTGGATCAT 60.624 40.000 0.00 0.00 39.15 2.45
2241 2307 4.778534 AACAAGAATGAGCCAATGACTG 57.221 40.909 0.00 0.00 0.00 3.51
2244 2310 4.828939 AGTGAAACAAGAATGAGCCAATGA 59.171 37.500 0.00 0.00 41.43 2.57
2308 2378 1.398390 GATTTGTGAGCATGGTCCGAC 59.602 52.381 21.58 14.37 0.00 4.79
2335 2405 6.595682 ACAATATCGATTTTCAGGACCAGAT 58.404 36.000 1.71 0.00 0.00 2.90
2435 2505 5.163652 TGTGAGATCACTTACATGGAGTACG 60.164 44.000 13.74 0.00 46.55 3.67
2562 2632 7.880195 GCTCATACACCTACAATTCCTCAATAT 59.120 37.037 0.00 0.00 0.00 1.28
2582 2652 8.774890 ATTATTTGCACAAAACATTGCTCATA 57.225 26.923 0.00 0.00 39.62 2.15
2586 2656 6.670233 CCAATTATTTGCACAAAACATTGCT 58.330 32.000 17.28 0.00 39.62 3.91
2624 2694 1.406539 GTTATTCGCCGACCTAGGACA 59.593 52.381 17.98 0.00 0.00 4.02
2696 2779 8.720562 CATGCGTCTCCAATGTGAAATAATATA 58.279 33.333 0.00 0.00 0.00 0.86
2697 2780 7.308770 CCATGCGTCTCCAATGTGAAATAATAT 60.309 37.037 0.00 0.00 0.00 1.28
2698 2781 6.017192 CCATGCGTCTCCAATGTGAAATAATA 60.017 38.462 0.00 0.00 0.00 0.98
2699 2782 5.221106 CCATGCGTCTCCAATGTGAAATAAT 60.221 40.000 0.00 0.00 0.00 1.28
2700 2783 4.096231 CCATGCGTCTCCAATGTGAAATAA 59.904 41.667 0.00 0.00 0.00 1.40
2701 2784 3.627123 CCATGCGTCTCCAATGTGAAATA 59.373 43.478 0.00 0.00 0.00 1.40
2702 2785 2.424601 CCATGCGTCTCCAATGTGAAAT 59.575 45.455 0.00 0.00 0.00 2.17
2715 2798 5.235305 AGAAATTATGAACACCATGCGTC 57.765 39.130 0.00 0.00 36.71 5.19
2717 2800 6.785191 ACTAAGAAATTATGAACACCATGCG 58.215 36.000 0.00 0.00 36.71 4.73
2725 2808 7.652507 CGGAGGGAGTACTAAGAAATTATGAAC 59.347 40.741 0.00 0.00 0.00 3.18
2739 2822 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
2740 2823 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
2741 2824 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2742 2825 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2743 2826 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2744 2827 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2745 2828 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2746 2829 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2763 2846 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
2764 2847 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
2765 2848 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
2766 2849 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
2769 2852 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
2770 2853 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
2772 2855 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2773 2856 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
2774 2857 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
2775 2858 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
2776 2859 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
2777 2860 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
2778 2861 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
2779 2862 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
2780 2863 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
2781 2864 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
2782 2865 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
2783 2866 5.221441 TGTTGCTCTGTATGTAGTCACTTGT 60.221 40.000 0.00 0.00 0.00 3.16
2784 2867 5.230182 TGTTGCTCTGTATGTAGTCACTTG 58.770 41.667 0.00 0.00 0.00 3.16
2785 2868 5.468540 TGTTGCTCTGTATGTAGTCACTT 57.531 39.130 0.00 0.00 0.00 3.16
2786 2869 5.185828 TCATGTTGCTCTGTATGTAGTCACT 59.814 40.000 0.00 0.00 0.00 3.41
2787 2870 5.410924 TCATGTTGCTCTGTATGTAGTCAC 58.589 41.667 0.00 0.00 0.00 3.67
2788 2871 5.185828 ACTCATGTTGCTCTGTATGTAGTCA 59.814 40.000 0.00 0.00 0.00 3.41
2789 2872 5.518128 CACTCATGTTGCTCTGTATGTAGTC 59.482 44.000 0.00 0.00 0.00 2.59
2790 2873 5.185828 TCACTCATGTTGCTCTGTATGTAGT 59.814 40.000 0.00 0.00 0.00 2.73
2791 2874 5.654497 TCACTCATGTTGCTCTGTATGTAG 58.346 41.667 0.00 0.00 0.00 2.74
2792 2875 5.659440 TCACTCATGTTGCTCTGTATGTA 57.341 39.130 0.00 0.00 0.00 2.29
2793 2876 4.541973 TCACTCATGTTGCTCTGTATGT 57.458 40.909 0.00 0.00 0.00 2.29
2794 2877 5.816258 AGATTCACTCATGTTGCTCTGTATG 59.184 40.000 0.00 0.00 0.00 2.39
2795 2878 5.987098 AGATTCACTCATGTTGCTCTGTAT 58.013 37.500 0.00 0.00 0.00 2.29
2796 2879 5.411831 AGATTCACTCATGTTGCTCTGTA 57.588 39.130 0.00 0.00 0.00 2.74
2797 2880 4.283363 AGATTCACTCATGTTGCTCTGT 57.717 40.909 0.00 0.00 0.00 3.41
2798 2881 5.063186 GTGTAGATTCACTCATGTTGCTCTG 59.937 44.000 0.00 0.00 35.68 3.35
2799 2882 5.046735 AGTGTAGATTCACTCATGTTGCTCT 60.047 40.000 0.00 0.99 44.07 4.09
2800 2883 5.174395 AGTGTAGATTCACTCATGTTGCTC 58.826 41.667 0.00 0.00 44.07 4.26
2801 2884 5.157940 AGTGTAGATTCACTCATGTTGCT 57.842 39.130 0.00 0.00 44.07 3.91
2831 2914 9.682465 ACTACACATACGGATGTATATAGACAT 57.318 33.333 23.13 12.70 44.82 3.06
2832 2915 9.511272 AACTACACATACGGATGTATATAGACA 57.489 33.333 23.13 2.07 44.82 3.41
2833 2916 9.985318 GAACTACACATACGGATGTATATAGAC 57.015 37.037 23.13 15.72 44.82 2.59
2834 2917 9.729281 TGAACTACACATACGGATGTATATAGA 57.271 33.333 23.13 7.05 44.82 1.98
2838 2921 9.471084 CAAATGAACTACACATACGGATGTATA 57.529 33.333 14.23 5.63 44.82 1.47
2839 2922 8.201464 TCAAATGAACTACACATACGGATGTAT 58.799 33.333 14.23 4.42 44.82 2.29
2840 2923 7.548967 TCAAATGAACTACACATACGGATGTA 58.451 34.615 14.23 0.00 44.82 2.29
2841 2924 7.389330 TTTCAAATGAACTACACATACGGATGT 59.611 33.333 7.68 7.68 39.20 3.06
2842 2925 6.902224 TCAAATGAACTACACATACGGATG 57.098 37.500 5.94 5.94 39.16 3.51
2843 2926 7.148306 GGTTTCAAATGAACTACACATACGGAT 60.148 37.037 0.00 0.00 33.13 4.18
2844 2927 6.148150 GGTTTCAAATGAACTACACATACGGA 59.852 38.462 0.00 0.00 33.13 4.69
2845 2928 6.148811 AGGTTTCAAATGAACTACACATACGG 59.851 38.462 0.00 0.00 33.13 4.02
2846 2929 7.117812 AGAGGTTTCAAATGAACTACACATACG 59.882 37.037 0.00 0.00 33.13 3.06
2847 2930 8.230486 CAGAGGTTTCAAATGAACTACACATAC 58.770 37.037 0.00 0.00 33.13 2.39
2848 2931 8.154203 TCAGAGGTTTCAAATGAACTACACATA 58.846 33.333 0.00 0.00 33.13 2.29
2849 2932 6.998074 TCAGAGGTTTCAAATGAACTACACAT 59.002 34.615 0.00 0.00 33.13 3.21
2850 2933 6.353323 TCAGAGGTTTCAAATGAACTACACA 58.647 36.000 0.00 0.00 33.13 3.72
2851 2934 6.861065 TCAGAGGTTTCAAATGAACTACAC 57.139 37.500 0.00 0.00 33.13 2.90
2852 2935 7.873719 TTTCAGAGGTTTCAAATGAACTACA 57.126 32.000 0.00 0.00 33.13 2.74
2853 2936 8.621286 TCTTTTCAGAGGTTTCAAATGAACTAC 58.379 33.333 0.00 0.00 33.13 2.73
2854 2937 8.621286 GTCTTTTCAGAGGTTTCAAATGAACTA 58.379 33.333 0.00 0.00 33.13 2.24
2855 2938 7.122650 TGTCTTTTCAGAGGTTTCAAATGAACT 59.877 33.333 0.00 0.00 33.13 3.01
2856 2939 7.257722 TGTCTTTTCAGAGGTTTCAAATGAAC 58.742 34.615 0.00 0.00 33.13 3.18
2857 2940 7.403312 TGTCTTTTCAGAGGTTTCAAATGAA 57.597 32.000 0.00 0.00 0.00 2.57
2858 2941 7.403312 TTGTCTTTTCAGAGGTTTCAAATGA 57.597 32.000 0.00 0.00 0.00 2.57
2859 2942 8.652810 ATTTGTCTTTTCAGAGGTTTCAAATG 57.347 30.769 0.00 0.00 33.66 2.32
2873 2956 9.556030 CCTCCGTTTCTAAATATTTGTCTTTTC 57.444 33.333 11.05 0.00 0.00 2.29
2874 2957 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
2875 2958 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2876 2959 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2877 2960 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2878 2961 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2879 2962 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2880 2963 8.726870 TTACTCCCTCCGTTTCTAAATATTTG 57.273 34.615 11.05 1.65 0.00 2.32
2883 2966 9.597681 TCTATTACTCCCTCCGTTTCTAAATAT 57.402 33.333 0.00 0.00 0.00 1.28
2884 2967 9.597681 ATCTATTACTCCCTCCGTTTCTAAATA 57.402 33.333 0.00 0.00 0.00 1.40
2885 2968 7.909485 TCTATTACTCCCTCCGTTTCTAAAT 57.091 36.000 0.00 0.00 0.00 1.40
2886 2969 7.909485 ATCTATTACTCCCTCCGTTTCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
2887 2970 8.443176 TCTATCTATTACTCCCTCCGTTTCTAA 58.557 37.037 0.00 0.00 0.00 2.10
2888 2971 7.982252 TCTATCTATTACTCCCTCCGTTTCTA 58.018 38.462 0.00 0.00 0.00 2.10
2889 2972 6.850234 TCTATCTATTACTCCCTCCGTTTCT 58.150 40.000 0.00 0.00 0.00 2.52
2890 2973 7.177041 ACATCTATCTATTACTCCCTCCGTTTC 59.823 40.741 0.00 0.00 0.00 2.78
2891 2974 7.011382 ACATCTATCTATTACTCCCTCCGTTT 58.989 38.462 0.00 0.00 0.00 3.60
2892 2975 6.434652 CACATCTATCTATTACTCCCTCCGTT 59.565 42.308 0.00 0.00 0.00 4.44
2893 2976 5.946972 CACATCTATCTATTACTCCCTCCGT 59.053 44.000 0.00 0.00 0.00 4.69
2894 2977 5.358442 CCACATCTATCTATTACTCCCTCCG 59.642 48.000 0.00 0.00 0.00 4.63
2895 2978 5.128008 GCCACATCTATCTATTACTCCCTCC 59.872 48.000 0.00 0.00 0.00 4.30
2896 2979 5.955355 AGCCACATCTATCTATTACTCCCTC 59.045 44.000 0.00 0.00 0.00 4.30
2897 2980 5.719085 CAGCCACATCTATCTATTACTCCCT 59.281 44.000 0.00 0.00 0.00 4.20
2898 2981 5.105146 CCAGCCACATCTATCTATTACTCCC 60.105 48.000 0.00 0.00 0.00 4.30
2899 2982 5.482175 ACCAGCCACATCTATCTATTACTCC 59.518 44.000 0.00 0.00 0.00 3.85
2900 2983 6.597832 ACCAGCCACATCTATCTATTACTC 57.402 41.667 0.00 0.00 0.00 2.59
2914 2997 1.203262 AGGGAGTACTAACCAGCCACA 60.203 52.381 16.13 0.00 0.00 4.17
2928 3011 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2929 3012 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2930 3013 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2931 3014 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2932 3015 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2933 3016 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2935 3018 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2962 3045 8.440833 GTGTCAAAAACGCTCTTATACTAATGT 58.559 33.333 0.00 0.00 35.42 2.71
2964 3047 8.773404 AGTGTCAAAAACGCTCTTATACTAAT 57.227 30.769 0.00 0.00 45.69 1.73
2966 3049 8.298854 TGTAGTGTCAAAAACGCTCTTATACTA 58.701 33.333 0.00 0.00 45.69 1.82
2967 3050 7.115947 GTGTAGTGTCAAAAACGCTCTTATACT 59.884 37.037 0.00 0.00 45.69 2.12
2969 3052 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2971 3054 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2973 3056 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2974 3057 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
2988 3071 4.982916 AGAGCGTTTTTGACACTAGTGTAG 59.017 41.667 27.98 13.76 45.05 2.74
2991 3074 4.795970 AAGAGCGTTTTTGACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
2992 3075 8.773404 AATATAAGAGCGTTTTTGACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
2996 3079 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2997 3080 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2998 3081 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2999 3082 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3000 3083 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3001 3084 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3002 3085 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3003 3086 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3004 3087 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3005 3088 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3006 3089 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3007 3090 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3008 3091 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3010 3093 7.857404 ATATCCCTCCGTCCCATAATATAAG 57.143 40.000 0.00 0.00 0.00 1.73
3018 3101 9.322769 GTAATATAATATATCCCTCCGTCCCAT 57.677 37.037 0.00 0.00 0.00 4.00
3021 3104 8.401490 ACGTAATATAATATATCCCTCCGTCC 57.599 38.462 0.00 0.00 0.00 4.79
3024 3107 8.400184 TGGACGTAATATAATATATCCCTCCG 57.600 38.462 0.00 0.00 0.00 4.63
3026 3109 9.640963 GCATGGACGTAATATAATATATCCCTC 57.359 37.037 0.00 0.00 0.00 4.30
3027 3110 9.381038 AGCATGGACGTAATATAATATATCCCT 57.619 33.333 0.00 0.00 0.00 4.20
3028 3111 9.640963 GAGCATGGACGTAATATAATATATCCC 57.359 37.037 0.00 0.00 0.00 3.85
3044 3435 2.279120 GAGGCTCGAGCATGGACG 60.279 66.667 36.27 0.00 44.36 4.79
3045 3436 1.086634 GTTGAGGCTCGAGCATGGAC 61.087 60.000 36.27 25.03 44.36 4.02
3057 3448 6.459066 TCACTATATGATAGCTTGTTGAGGC 58.541 40.000 0.00 0.00 29.99 4.70
3058 3449 7.890515 TCTCACTATATGATAGCTTGTTGAGG 58.109 38.462 0.00 0.00 36.48 3.86
3077 3468 5.936956 GTCATCTGGACAAAAGAATCTCACT 59.063 40.000 0.00 0.00 46.19 3.41
3113 3505 8.863086 TCCAATGAAAGTTTTGAGAAATCTGAT 58.137 29.630 0.00 0.00 0.00 2.90
3129 3521 9.388506 ACAAATATAGACAGTCTCCAATGAAAG 57.611 33.333 6.27 0.00 0.00 2.62
3131 3523 8.762645 AGACAAATATAGACAGTCTCCAATGAA 58.237 33.333 6.27 0.00 34.71 2.57
3168 3585 7.792032 TCATAGGTGTATAGTTCCTTTTCTGG 58.208 38.462 0.00 0.00 33.34 3.86
3171 3588 9.614792 ACAATCATAGGTGTATAGTTCCTTTTC 57.385 33.333 0.00 0.00 33.34 2.29
3213 3631 8.677300 CAATTCAATACTAGCACATTTAGGTGT 58.323 33.333 0.00 0.00 40.89 4.16
3214 3632 8.677300 ACAATTCAATACTAGCACATTTAGGTG 58.323 33.333 0.00 0.00 41.72 4.00
3215 3633 8.807948 ACAATTCAATACTAGCACATTTAGGT 57.192 30.769 0.00 0.00 0.00 3.08
3243 3663 0.037447 AGCAGAAGGCCAAGAGTTCC 59.963 55.000 5.01 0.00 46.50 3.62
3307 3762 5.106555 CCATATATGGTTCATGAGAAACGCC 60.107 44.000 21.85 0.00 44.59 5.68
3314 3769 4.885907 GGCATCCCATATATGGTTCATGAG 59.114 45.833 26.59 12.13 46.65 2.90
3442 3898 4.582869 CATCTTCTCTTGGTTCACCATCA 58.417 43.478 0.00 0.00 46.97 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.