Multiple sequence alignment - TraesCS3B01G400700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G400700 chr3B 100.000 2321 0 0 1 2321 632816314 632818634 0.000000e+00 4287
1 TraesCS3B01G400700 chr3B 92.265 1267 72 13 1 1247 172155735 172154475 0.000000e+00 1773
2 TraesCS3B01G400700 chr3B 96.172 209 7 1 2114 2321 744329480 744329272 7.940000e-90 340
3 TraesCS3B01G400700 chr7A 92.233 1854 115 17 1 1835 418347132 418348975 0.000000e+00 2599
4 TraesCS3B01G400700 chr7A 87.032 802 66 17 992 1790 108809312 108808546 0.000000e+00 870
5 TraesCS3B01G400700 chr7A 97.115 208 6 0 2114 2321 544855829 544856036 3.670000e-93 351
6 TraesCS3B01G400700 chr7A 96.651 209 6 1 2114 2321 418349407 418349615 1.710000e-91 346
7 TraesCS3B01G400700 chr4A 92.700 1274 63 16 1 1250 590624476 590625743 0.000000e+00 1810
8 TraesCS3B01G400700 chr4A 91.568 1269 75 13 1 1248 604682973 604684230 0.000000e+00 1722
9 TraesCS3B01G400700 chr4A 96.172 209 7 1 2114 2321 608905336 608905544 7.940000e-90 340
10 TraesCS3B01G400700 chr5B 91.267 1271 83 14 1 1250 546010333 546011596 0.000000e+00 1707
11 TraesCS3B01G400700 chr5B 90.499 1063 70 12 858 1918 453116983 453115950 0.000000e+00 1375
12 TraesCS3B01G400700 chr5B 92.265 892 47 11 1 874 622316446 622317333 0.000000e+00 1245
13 TraesCS3B01G400700 chr3A 91.397 1267 77 14 1 1250 71903674 71904925 0.000000e+00 1707
14 TraesCS3B01G400700 chr3A 93.594 843 54 0 1051 1893 56494202 56495044 0.000000e+00 1258
15 TraesCS3B01G400700 chr2A 90.773 1268 79 21 1 1250 779539084 779537837 0.000000e+00 1659
16 TraesCS3B01G400700 chr2A 90.623 1269 66 28 1 1250 35224233 35225467 0.000000e+00 1635
17 TraesCS3B01G400700 chr2A 92.273 440 16 3 1297 1736 196308699 196308278 1.970000e-170 608
18 TraesCS3B01G400700 chr6B 90.055 1277 86 27 1 1250 616363051 616364313 0.000000e+00 1616
19 TraesCS3B01G400700 chr6B 89.933 894 70 13 1 881 696461857 696462743 0.000000e+00 1134
20 TraesCS3B01G400700 chr6B 95.694 209 8 1 2114 2321 28129047 28128839 3.700000e-88 335
21 TraesCS3B01G400700 chr1B 90.555 1207 85 14 1 1185 3841339 3842538 0.000000e+00 1570
22 TraesCS3B01G400700 chr5A 92.889 886 49 8 1 876 644379946 644380827 0.000000e+00 1275
23 TraesCS3B01G400700 chr5A 96.635 208 7 0 2114 2321 631886280 631886487 1.710000e-91 346
24 TraesCS3B01G400700 chr5A 96.172 209 7 1 2114 2321 644382882 644383090 7.940000e-90 340
25 TraesCS3B01G400700 chr7B 92.866 799 43 8 1 788 134440921 134440126 0.000000e+00 1147
26 TraesCS3B01G400700 chr7B 87.900 843 80 17 1001 1834 62687897 62687068 0.000000e+00 972
27 TraesCS3B01G400700 chr2B 92.588 796 49 4 1 788 3084556 3085349 0.000000e+00 1134
28 TraesCS3B01G400700 chr4B 92.168 715 41 6 1 701 106580508 106581221 0.000000e+00 996
29 TraesCS3B01G400700 chr7D 86.839 889 82 17 983 1855 104567167 104566298 0.000000e+00 961
30 TraesCS3B01G400700 chr1D 95.029 523 26 0 1119 1641 10037457 10037979 0.000000e+00 822
31 TraesCS3B01G400700 chr1D 94.455 523 29 0 1119 1641 9923769 9923247 0.000000e+00 806
32 TraesCS3B01G400700 chr1D 97.573 206 5 0 1713 1918 9923250 9923045 1.020000e-93 353
33 TraesCS3B01G400700 chr1D 97.573 206 5 0 1713 1918 10037976 10038181 1.020000e-93 353
34 TraesCS3B01G400700 chrUn 96.651 209 6 1 2114 2321 264960841 264961049 1.710000e-91 346
35 TraesCS3B01G400700 chr6A 96.651 209 6 1 2114 2321 567412126 567411918 1.710000e-91 346
36 TraesCS3B01G400700 chr1A 87.083 240 29 2 1167 1405 554061518 554061756 1.060000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G400700 chr3B 632816314 632818634 2320 False 4287.0 4287 100.0000 1 2321 1 chr3B.!!$F1 2320
1 TraesCS3B01G400700 chr3B 172154475 172155735 1260 True 1773.0 1773 92.2650 1 1247 1 chr3B.!!$R1 1246
2 TraesCS3B01G400700 chr7A 418347132 418349615 2483 False 1472.5 2599 94.4420 1 2321 2 chr7A.!!$F2 2320
3 TraesCS3B01G400700 chr7A 108808546 108809312 766 True 870.0 870 87.0320 992 1790 1 chr7A.!!$R1 798
4 TraesCS3B01G400700 chr4A 590624476 590625743 1267 False 1810.0 1810 92.7000 1 1250 1 chr4A.!!$F1 1249
5 TraesCS3B01G400700 chr4A 604682973 604684230 1257 False 1722.0 1722 91.5680 1 1248 1 chr4A.!!$F2 1247
6 TraesCS3B01G400700 chr5B 546010333 546011596 1263 False 1707.0 1707 91.2670 1 1250 1 chr5B.!!$F1 1249
7 TraesCS3B01G400700 chr5B 453115950 453116983 1033 True 1375.0 1375 90.4990 858 1918 1 chr5B.!!$R1 1060
8 TraesCS3B01G400700 chr5B 622316446 622317333 887 False 1245.0 1245 92.2650 1 874 1 chr5B.!!$F2 873
9 TraesCS3B01G400700 chr3A 71903674 71904925 1251 False 1707.0 1707 91.3970 1 1250 1 chr3A.!!$F2 1249
10 TraesCS3B01G400700 chr3A 56494202 56495044 842 False 1258.0 1258 93.5940 1051 1893 1 chr3A.!!$F1 842
11 TraesCS3B01G400700 chr2A 779537837 779539084 1247 True 1659.0 1659 90.7730 1 1250 1 chr2A.!!$R2 1249
12 TraesCS3B01G400700 chr2A 35224233 35225467 1234 False 1635.0 1635 90.6230 1 1250 1 chr2A.!!$F1 1249
13 TraesCS3B01G400700 chr6B 616363051 616364313 1262 False 1616.0 1616 90.0550 1 1250 1 chr6B.!!$F1 1249
14 TraesCS3B01G400700 chr6B 696461857 696462743 886 False 1134.0 1134 89.9330 1 881 1 chr6B.!!$F2 880
15 TraesCS3B01G400700 chr1B 3841339 3842538 1199 False 1570.0 1570 90.5550 1 1185 1 chr1B.!!$F1 1184
16 TraesCS3B01G400700 chr5A 644379946 644383090 3144 False 807.5 1275 94.5305 1 2321 2 chr5A.!!$F2 2320
17 TraesCS3B01G400700 chr7B 134440126 134440921 795 True 1147.0 1147 92.8660 1 788 1 chr7B.!!$R2 787
18 TraesCS3B01G400700 chr7B 62687068 62687897 829 True 972.0 972 87.9000 1001 1834 1 chr7B.!!$R1 833
19 TraesCS3B01G400700 chr2B 3084556 3085349 793 False 1134.0 1134 92.5880 1 788 1 chr2B.!!$F1 787
20 TraesCS3B01G400700 chr4B 106580508 106581221 713 False 996.0 996 92.1680 1 701 1 chr4B.!!$F1 700
21 TraesCS3B01G400700 chr7D 104566298 104567167 869 True 961.0 961 86.8390 983 1855 1 chr7D.!!$R1 872
22 TraesCS3B01G400700 chr1D 10037457 10038181 724 False 587.5 822 96.3010 1119 1918 2 chr1D.!!$F1 799
23 TraesCS3B01G400700 chr1D 9923045 9923769 724 True 579.5 806 96.0140 1119 1918 2 chr1D.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 927 0.178958 GCCTCGATCCCCTCTTCCTA 60.179 60.0 0.0 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1950 3072 0.17668 ATACAGCCTCCTGAAGTGCG 59.823 55.0 0.0 0.0 41.77 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 134 7.901874 TCGTCCAAAGAAAATTAAAACTTCG 57.098 32.000 0.00 0.00 0.00 3.79
168 175 6.070309 TGCTATTCCAAAATGCACCCTTTTAT 60.070 34.615 0.00 0.00 29.71 1.40
275 284 7.587037 TTGTCTTTTTGATGAGAGGTGAATT 57.413 32.000 0.00 0.00 0.00 2.17
279 288 9.617975 GTCTTTTTGATGAGAGGTGAATTAAAG 57.382 33.333 0.00 0.00 0.00 1.85
315 324 9.912634 ATTTTAAGATTTGGTCAACTGTACATG 57.087 29.630 0.00 0.00 0.00 3.21
434 456 8.675705 AAAATGATTTTCCACCCTAAAAACTG 57.324 30.769 0.00 0.00 30.20 3.16
494 516 8.887036 ATTCCAATTCCAAGTTTGTTAGTTTC 57.113 30.769 0.00 0.00 0.00 2.78
633 657 8.378172 CCAATTTAGATGGTCATAACGTGTAT 57.622 34.615 0.00 0.00 33.08 2.29
741 766 1.229984 CCTTTCTCCCTCACCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
801 854 1.139095 CTAGCGTCGTCTCCCAACC 59.861 63.158 0.00 0.00 0.00 3.77
856 923 2.840102 CCGCCTCGATCCCCTCTT 60.840 66.667 0.00 0.00 0.00 2.85
860 927 0.178958 GCCTCGATCCCCTCTTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
975 1692 0.762842 CCCGTGTCCCCATCCTATCA 60.763 60.000 0.00 0.00 0.00 2.15
982 1711 1.493022 TCCCCATCCTATCAAAACCCG 59.507 52.381 0.00 0.00 0.00 5.28
988 1717 3.426787 TCCTATCAAAACCCGAAGCAA 57.573 42.857 0.00 0.00 0.00 3.91
999 1728 3.751246 GAAGCAATGGCAGCCGCA 61.751 61.111 7.03 0.00 44.61 5.69
1011 1740 4.133796 GCCGCAATGGTGAAGGGC 62.134 66.667 0.00 0.00 41.21 5.19
1139 1985 4.778143 GGTGAGATTGGGCGGCGT 62.778 66.667 9.37 0.00 0.00 5.68
1295 2164 0.251077 AAGGCCAAGACCAAGAGCAG 60.251 55.000 5.01 0.00 0.00 4.24
1303 2172 4.711949 CCAAGAGCAGCGGCACCT 62.712 66.667 12.44 4.70 44.61 4.00
1304 2173 3.429141 CAAGAGCAGCGGCACCTG 61.429 66.667 12.44 0.37 44.61 4.00
1439 2508 5.241506 CCTTAGTTTTTGATCCACTGCTTGA 59.758 40.000 0.00 0.00 0.00 3.02
1477 2550 1.761449 TTGCTGAGGCTGTTTGTTGA 58.239 45.000 0.00 0.00 39.59 3.18
1538 2615 0.462759 ACCCGAGCAGCATCTAAAGC 60.463 55.000 0.00 0.00 0.00 3.51
1622 2699 6.710295 TGATTTTACTCTAGCATGTGTGTTGT 59.290 34.615 0.00 0.00 0.00 3.32
1631 2708 5.772825 AGCATGTGTGTTGTATTTTGTCT 57.227 34.783 0.00 0.00 0.00 3.41
1784 2879 7.835682 TCATTCAATCTGGTTGATGTAGGATTT 59.164 33.333 3.86 0.00 45.77 2.17
1918 3040 1.134946 GTTGTGCCTATGGATGGTTGC 59.865 52.381 0.00 0.00 0.00 4.17
1919 3041 0.395586 TGTGCCTATGGATGGTTGCC 60.396 55.000 0.00 0.00 0.00 4.52
1920 3042 1.109323 GTGCCTATGGATGGTTGCCC 61.109 60.000 0.00 0.00 0.00 5.36
1921 3043 1.288508 TGCCTATGGATGGTTGCCCT 61.289 55.000 0.00 0.00 0.00 5.19
1922 3044 0.106015 GCCTATGGATGGTTGCCCTT 60.106 55.000 0.00 0.00 0.00 3.95
1923 3045 1.696063 CCTATGGATGGTTGCCCTTG 58.304 55.000 0.00 0.00 0.00 3.61
1924 3046 1.215173 CCTATGGATGGTTGCCCTTGA 59.785 52.381 0.00 0.00 0.00 3.02
1925 3047 2.158415 CCTATGGATGGTTGCCCTTGAT 60.158 50.000 0.00 0.00 0.00 2.57
1926 3048 1.784358 ATGGATGGTTGCCCTTGATG 58.216 50.000 0.00 0.00 0.00 3.07
1927 3049 0.324552 TGGATGGTTGCCCTTGATGG 60.325 55.000 0.00 0.00 0.00 3.51
1928 3050 0.324645 GGATGGTTGCCCTTGATGGT 60.325 55.000 0.00 0.00 0.00 3.55
1929 3051 1.560505 GATGGTTGCCCTTGATGGTT 58.439 50.000 0.00 0.00 0.00 3.67
1930 3052 1.205417 GATGGTTGCCCTTGATGGTTG 59.795 52.381 0.00 0.00 0.00 3.77
1931 3053 1.293179 GGTTGCCCTTGATGGTTGC 59.707 57.895 0.00 0.00 0.00 4.17
1932 3054 1.293179 GTTGCCCTTGATGGTTGCC 59.707 57.895 0.00 0.00 0.00 4.52
1934 3056 1.186917 TTGCCCTTGATGGTTGCCAG 61.187 55.000 0.00 0.00 36.75 4.85
1935 3057 2.353610 GCCCTTGATGGTTGCCAGG 61.354 63.158 0.00 0.00 36.75 4.45
1936 3058 2.353610 CCCTTGATGGTTGCCAGGC 61.354 63.158 3.66 3.66 36.75 4.85
1940 3062 0.611618 TTGATGGTTGCCAGGCGATT 60.612 50.000 4.08 0.00 36.75 3.34
1943 3065 1.956477 GATGGTTGCCAGGCGATTATT 59.044 47.619 4.08 0.00 36.75 1.40
1944 3066 1.102154 TGGTTGCCAGGCGATTATTG 58.898 50.000 4.08 0.00 0.00 1.90
1945 3067 0.385390 GGTTGCCAGGCGATTATTGG 59.615 55.000 4.08 0.00 35.06 3.16
1950 3072 2.165437 TGCCAGGCGATTATTGGTTTTC 59.835 45.455 7.03 0.00 34.43 2.29
1951 3073 2.794631 GCCAGGCGATTATTGGTTTTCG 60.795 50.000 0.00 0.00 34.43 3.46
1958 3080 4.717991 CGATTATTGGTTTTCGCACTTCA 58.282 39.130 0.00 0.00 0.00 3.02
1960 3082 4.497473 TTATTGGTTTTCGCACTTCAGG 57.503 40.909 0.00 0.00 0.00 3.86
1962 3084 1.593196 TGGTTTTCGCACTTCAGGAG 58.407 50.000 0.00 0.00 0.00 3.69
1963 3085 0.875059 GGTTTTCGCACTTCAGGAGG 59.125 55.000 0.00 0.00 0.00 4.30
1964 3086 0.238553 GTTTTCGCACTTCAGGAGGC 59.761 55.000 0.00 0.00 0.00 4.70
1965 3087 0.108585 TTTTCGCACTTCAGGAGGCT 59.891 50.000 0.00 0.00 0.00 4.58
1966 3088 0.603707 TTTCGCACTTCAGGAGGCTG 60.604 55.000 0.00 0.00 0.00 4.85
1967 3089 1.758440 TTCGCACTTCAGGAGGCTGT 61.758 55.000 0.00 0.00 0.00 4.40
1971 3093 2.159099 CGCACTTCAGGAGGCTGTATTA 60.159 50.000 0.00 0.00 0.00 0.98
1972 3094 3.678806 CGCACTTCAGGAGGCTGTATTAA 60.679 47.826 0.00 0.00 0.00 1.40
1974 3096 4.274459 GCACTTCAGGAGGCTGTATTAATG 59.726 45.833 0.00 0.00 0.00 1.90
1977 3099 2.106511 TCAGGAGGCTGTATTAATGGCC 59.893 50.000 16.20 16.20 44.38 5.36
1981 3103 0.961753 GGCTGTATTAATGGCCCTGC 59.038 55.000 0.00 0.00 38.77 4.85
1983 3105 1.338020 GCTGTATTAATGGCCCTGCAC 59.662 52.381 0.00 0.00 0.00 4.57
1984 3106 2.653726 CTGTATTAATGGCCCTGCACA 58.346 47.619 0.00 0.00 0.00 4.57
1985 3107 3.023119 CTGTATTAATGGCCCTGCACAA 58.977 45.455 0.00 0.00 0.00 3.33
1988 3110 1.544724 TTAATGGCCCTGCACAAGTC 58.455 50.000 0.00 0.00 0.00 3.01
1989 3111 0.323360 TAATGGCCCTGCACAAGTCC 60.323 55.000 0.00 0.00 0.00 3.85
1990 3112 2.370459 AATGGCCCTGCACAAGTCCA 62.370 55.000 0.00 0.00 32.97 4.02
1991 3113 2.674380 GGCCCTGCACAAGTCCAG 60.674 66.667 0.00 0.00 0.00 3.86
1992 3114 2.113986 GCCCTGCACAAGTCCAGT 59.886 61.111 0.00 0.00 0.00 4.00
1993 3115 1.529244 GCCCTGCACAAGTCCAGTT 60.529 57.895 0.00 0.00 0.00 3.16
1994 3116 1.518903 GCCCTGCACAAGTCCAGTTC 61.519 60.000 0.00 0.00 0.00 3.01
1995 3117 0.179020 CCCTGCACAAGTCCAGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
1996 3118 1.233019 CCTGCACAAGTCCAGTTCAG 58.767 55.000 0.00 0.00 31.39 3.02
1997 3119 0.590195 CTGCACAAGTCCAGTTCAGC 59.410 55.000 0.00 0.00 0.00 4.26
1998 3120 0.181114 TGCACAAGTCCAGTTCAGCT 59.819 50.000 0.00 0.00 0.00 4.24
2000 3122 1.678101 GCACAAGTCCAGTTCAGCTTT 59.322 47.619 0.00 0.00 0.00 3.51
2001 3123 2.542411 GCACAAGTCCAGTTCAGCTTTG 60.542 50.000 0.00 0.00 0.00 2.77
2002 3124 1.678101 ACAAGTCCAGTTCAGCTTTGC 59.322 47.619 0.00 0.00 0.00 3.68
2003 3125 1.952296 CAAGTCCAGTTCAGCTTTGCT 59.048 47.619 0.00 0.00 40.77 3.91
2014 3136 1.831580 AGCTTTGCTGTCTGAATCCC 58.168 50.000 0.00 0.00 37.57 3.85
2015 3137 0.449388 GCTTTGCTGTCTGAATCCCG 59.551 55.000 0.00 0.00 0.00 5.14
2016 3138 1.813513 CTTTGCTGTCTGAATCCCGT 58.186 50.000 0.00 0.00 0.00 5.28
2017 3139 1.466167 CTTTGCTGTCTGAATCCCGTG 59.534 52.381 0.00 0.00 0.00 4.94
2018 3140 0.684535 TTGCTGTCTGAATCCCGTGA 59.315 50.000 0.00 0.00 0.00 4.35
2020 3142 1.278985 TGCTGTCTGAATCCCGTGAAT 59.721 47.619 0.00 0.00 0.00 2.57
2022 3144 3.134623 TGCTGTCTGAATCCCGTGAATAT 59.865 43.478 0.00 0.00 0.00 1.28
2023 3145 3.496130 GCTGTCTGAATCCCGTGAATATG 59.504 47.826 0.00 0.00 0.00 1.78
2024 3146 4.697514 CTGTCTGAATCCCGTGAATATGT 58.302 43.478 0.00 0.00 0.00 2.29
2025 3147 5.097742 TGTCTGAATCCCGTGAATATGTT 57.902 39.130 0.00 0.00 0.00 2.71
2026 3148 4.875536 TGTCTGAATCCCGTGAATATGTTG 59.124 41.667 0.00 0.00 0.00 3.33
2028 3150 5.006746 GTCTGAATCCCGTGAATATGTTGAC 59.993 44.000 0.00 0.00 0.00 3.18
2029 3151 3.868661 TGAATCCCGTGAATATGTTGACG 59.131 43.478 7.20 7.20 43.24 4.35
2036 3158 4.866921 CGTGAATATGTTGACGGGATCTA 58.133 43.478 6.30 0.00 40.54 1.98
2037 3159 5.286438 CGTGAATATGTTGACGGGATCTAA 58.714 41.667 6.30 0.00 40.54 2.10
2038 3160 5.175126 CGTGAATATGTTGACGGGATCTAAC 59.825 44.000 6.30 0.00 40.54 2.34
2040 3162 5.129650 TGAATATGTTGACGGGATCTAACCA 59.870 40.000 0.00 0.00 0.00 3.67
2041 3163 5.825593 ATATGTTGACGGGATCTAACCAT 57.174 39.130 0.00 0.00 0.00 3.55
2042 3164 3.536956 TGTTGACGGGATCTAACCATC 57.463 47.619 0.00 0.00 0.00 3.51
2043 3165 2.169769 TGTTGACGGGATCTAACCATCC 59.830 50.000 0.00 0.00 41.74 3.51
2045 3167 3.605726 TGACGGGATCTAACCATCCTA 57.394 47.619 0.00 0.00 42.09 2.94
2046 3168 3.228453 TGACGGGATCTAACCATCCTAC 58.772 50.000 0.00 0.00 42.09 3.18
2047 3169 3.228453 GACGGGATCTAACCATCCTACA 58.772 50.000 0.00 0.00 42.09 2.74
2048 3170 3.640029 GACGGGATCTAACCATCCTACAA 59.360 47.826 0.00 0.00 42.09 2.41
2049 3171 3.387050 ACGGGATCTAACCATCCTACAAC 59.613 47.826 0.00 0.00 42.09 3.32
2050 3172 3.641906 CGGGATCTAACCATCCTACAACT 59.358 47.826 0.00 0.00 42.09 3.16
2054 3176 6.284459 GGATCTAACCATCCTACAACTTCAG 58.716 44.000 0.00 0.00 39.59 3.02
2055 3177 5.677319 TCTAACCATCCTACAACTTCAGG 57.323 43.478 0.00 0.00 0.00 3.86
2057 3179 1.916181 ACCATCCTACAACTTCAGGGG 59.084 52.381 0.00 0.00 32.40 4.79
2058 3180 1.916181 CCATCCTACAACTTCAGGGGT 59.084 52.381 0.00 0.00 32.40 4.95
2059 3181 2.308866 CCATCCTACAACTTCAGGGGTT 59.691 50.000 0.00 0.00 32.40 4.11
2061 3183 3.502123 TCCTACAACTTCAGGGGTTTG 57.498 47.619 0.00 0.00 32.40 2.93
2062 3184 2.781174 TCCTACAACTTCAGGGGTTTGT 59.219 45.455 0.00 0.00 32.40 2.83
2063 3185 3.203487 TCCTACAACTTCAGGGGTTTGTT 59.797 43.478 0.00 0.00 32.40 2.83
2064 3186 4.412858 TCCTACAACTTCAGGGGTTTGTTA 59.587 41.667 0.00 0.00 32.40 2.41
2066 3188 5.773176 CCTACAACTTCAGGGGTTTGTTAAT 59.227 40.000 0.00 0.00 0.00 1.40
2067 3189 5.529581 ACAACTTCAGGGGTTTGTTAATG 57.470 39.130 0.00 0.00 0.00 1.90
2068 3190 4.959839 ACAACTTCAGGGGTTTGTTAATGT 59.040 37.500 0.00 0.00 0.00 2.71
2071 3193 4.827284 ACTTCAGGGGTTTGTTAATGTCTG 59.173 41.667 0.00 0.00 0.00 3.51
2072 3194 4.715534 TCAGGGGTTTGTTAATGTCTGA 57.284 40.909 0.00 0.00 0.00 3.27
2073 3195 5.055265 TCAGGGGTTTGTTAATGTCTGAA 57.945 39.130 0.00 0.00 0.00 3.02
2075 3197 5.710099 TCAGGGGTTTGTTAATGTCTGAATC 59.290 40.000 0.00 0.00 0.00 2.52
2076 3198 5.711976 CAGGGGTTTGTTAATGTCTGAATCT 59.288 40.000 0.00 0.00 0.00 2.40
2077 3199 5.946377 AGGGGTTTGTTAATGTCTGAATCTC 59.054 40.000 0.00 0.00 0.00 2.75
2078 3200 5.125578 GGGGTTTGTTAATGTCTGAATCTCC 59.874 44.000 0.00 0.00 0.00 3.71
2081 3203 7.610305 GGGTTTGTTAATGTCTGAATCTCCTTA 59.390 37.037 0.00 0.00 0.00 2.69
2084 3206 9.793259 TTTGTTAATGTCTGAATCTCCTTACTT 57.207 29.630 0.00 0.00 0.00 2.24
2085 3207 9.436957 TTGTTAATGTCTGAATCTCCTTACTTC 57.563 33.333 0.00 0.00 0.00 3.01
2086 3208 8.593679 TGTTAATGTCTGAATCTCCTTACTTCA 58.406 33.333 0.00 0.00 0.00 3.02
2087 3209 9.092876 GTTAATGTCTGAATCTCCTTACTTCAG 57.907 37.037 5.40 5.40 44.59 3.02
2088 3210 5.667539 TGTCTGAATCTCCTTACTTCAGG 57.332 43.478 10.61 0.00 43.81 3.86
2090 3212 4.468153 GTCTGAATCTCCTTACTTCAGGGT 59.532 45.833 10.61 0.00 43.81 4.34
2091 3213 4.712337 TCTGAATCTCCTTACTTCAGGGTC 59.288 45.833 10.61 0.00 43.81 4.46
2092 3214 3.775316 TGAATCTCCTTACTTCAGGGTCC 59.225 47.826 0.00 0.00 34.24 4.46
2093 3215 1.848652 TCTCCTTACTTCAGGGTCCG 58.151 55.000 0.00 0.00 34.24 4.79
2094 3216 0.824759 CTCCTTACTTCAGGGTCCGG 59.175 60.000 0.00 0.00 34.24 5.14
2095 3217 0.410663 TCCTTACTTCAGGGTCCGGA 59.589 55.000 0.00 0.00 34.24 5.14
2096 3218 1.007963 TCCTTACTTCAGGGTCCGGAT 59.992 52.381 7.81 0.00 34.24 4.18
2098 3220 2.158943 CCTTACTTCAGGGTCCGGATTC 60.159 54.545 7.81 2.87 0.00 2.52
2099 3221 2.241281 TACTTCAGGGTCCGGATTCA 57.759 50.000 7.81 0.00 0.00 2.57
2101 3223 0.613260 CTTCAGGGTCCGGATTCACA 59.387 55.000 7.81 0.00 0.00 3.58
2102 3224 0.323629 TTCAGGGTCCGGATTCACAC 59.676 55.000 7.81 0.00 0.00 3.82
2105 3227 1.078426 GGGTCCGGATTCACACCAG 60.078 63.158 7.81 0.00 0.00 4.00
2106 3228 1.677552 GGTCCGGATTCACACCAGT 59.322 57.895 7.81 0.00 0.00 4.00
2107 3229 0.899720 GGTCCGGATTCACACCAGTA 59.100 55.000 7.81 0.00 0.00 2.74
2108 3230 1.134788 GGTCCGGATTCACACCAGTAG 60.135 57.143 7.81 0.00 0.00 2.57
2112 3234 4.581824 GTCCGGATTCACACCAGTAGTATA 59.418 45.833 7.81 0.00 0.00 1.47
2143 3398 4.754618 TCCTGTTCACATACACATGTTCAC 59.245 41.667 0.00 0.00 42.98 3.18
2204 3459 4.516698 GGTGAGTGAGCTTCAGAATTGAAA 59.483 41.667 0.00 0.00 42.48 2.69
2220 3475 6.827762 AGAATTGAAATTTGTTTTTGCTGGGA 59.172 30.769 0.00 0.00 0.00 4.37
2312 3569 3.057386 TCATTTCATCATGTGTGTGCCAC 60.057 43.478 0.00 0.00 44.78 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
279 288 9.213799 TGACCAAATCTTAAAATGTAAAATGCC 57.786 29.630 0.00 0.00 0.00 4.40
315 324 8.655651 TTTCCAAACCAATAAGACAACATTTC 57.344 30.769 0.00 0.00 0.00 2.17
330 339 3.068873 GCACCACACTATTTTCCAAACCA 59.931 43.478 0.00 0.00 0.00 3.67
332 341 3.068873 TGGCACCACACTATTTTCCAAAC 59.931 43.478 0.00 0.00 0.00 2.93
343 352 2.765699 ACTTTCAAAATGGCACCACACT 59.234 40.909 0.00 0.00 0.00 3.55
408 425 9.119418 CAGTTTTTAGGGTGGAAAATCATTTTT 57.881 29.630 0.00 0.00 37.75 1.94
419 436 5.947663 TGAGAAATCAGTTTTTAGGGTGGA 58.052 37.500 0.00 0.00 0.00 4.02
422 444 8.793592 GTGTTATGAGAAATCAGTTTTTAGGGT 58.206 33.333 0.00 0.00 0.00 4.34
633 657 1.002069 ATGGACCAATCAGAGCCCAA 58.998 50.000 0.00 0.00 0.00 4.12
676 700 3.909662 GCATCCAACGGTGCTGAT 58.090 55.556 0.00 0.00 38.30 2.90
801 854 1.132913 TGGATCTGGATCTGGAGAGGG 60.133 57.143 9.96 0.00 37.92 4.30
847 913 1.439143 GAGGGGATAGGAAGAGGGGAT 59.561 57.143 0.00 0.00 0.00 3.85
916 1625 4.410400 GAAGGTCAGGCGGGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
917 1626 3.316573 GAGAAGGTCAGGCGGGGTG 62.317 68.421 0.00 0.00 0.00 4.61
918 1627 3.003763 GAGAAGGTCAGGCGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
975 1692 0.318120 CTGCCATTGCTTCGGGTTTT 59.682 50.000 0.00 0.00 38.71 2.43
982 1711 2.567564 ATTGCGGCTGCCATTGCTTC 62.568 55.000 20.29 0.00 41.78 3.86
988 1717 3.454573 CACCATTGCGGCTGCCAT 61.455 61.111 20.29 6.68 41.78 4.40
999 1728 2.676471 GTGCGGCCCTTCACCATT 60.676 61.111 0.00 0.00 0.00 3.16
1026 1825 1.033746 CCCGGACGTAGAGCCTAACA 61.034 60.000 0.73 0.00 0.00 2.41
1029 1828 2.194056 CCCCGGACGTAGAGCCTA 59.806 66.667 0.73 0.00 0.00 3.93
1139 1985 1.152984 CCCCACATCGCCATTAGCA 60.153 57.895 0.00 0.00 44.04 3.49
1304 2173 2.731374 CCTAGAGGCAGCGGTAGC 59.269 66.667 0.00 0.00 45.58 3.58
1354 2223 4.814294 GAACTGGGCGCGGACGAT 62.814 66.667 17.67 0.00 43.93 3.73
1477 2550 1.363443 CCCTGCACACAACGCAAAT 59.637 52.632 0.00 0.00 39.30 2.32
1631 2708 4.021229 TCCTAGTCATTCTCAAGGCGTAA 58.979 43.478 0.00 0.00 0.00 3.18
1784 2879 4.338118 GGGATTAAAATGGCAAGATCACGA 59.662 41.667 0.00 0.00 0.00 4.35
1850 2972 6.367969 ACAATGTAAACGGATCAAGTACAGAC 59.632 38.462 0.00 0.00 0.00 3.51
1918 3040 2.353610 GCCTGGCAACCATCAAGGG 61.354 63.158 15.17 0.00 43.89 3.95
1919 3041 2.703798 CGCCTGGCAACCATCAAGG 61.704 63.158 20.29 0.00 45.67 3.61
1920 3042 1.033746 ATCGCCTGGCAACCATCAAG 61.034 55.000 20.29 0.00 30.82 3.02
1921 3043 0.611618 AATCGCCTGGCAACCATCAA 60.612 50.000 20.29 0.00 30.82 2.57
1922 3044 0.254462 TAATCGCCTGGCAACCATCA 59.746 50.000 20.29 0.00 30.82 3.07
1923 3045 1.609208 ATAATCGCCTGGCAACCATC 58.391 50.000 20.29 0.00 30.82 3.51
1924 3046 1.682854 CAATAATCGCCTGGCAACCAT 59.317 47.619 20.29 3.25 30.82 3.55
1925 3047 1.102154 CAATAATCGCCTGGCAACCA 58.898 50.000 20.29 0.65 0.00 3.67
1926 3048 0.385390 CCAATAATCGCCTGGCAACC 59.615 55.000 20.29 0.00 0.00 3.77
1927 3049 1.102978 ACCAATAATCGCCTGGCAAC 58.897 50.000 20.29 0.00 33.19 4.17
1928 3050 1.846007 AACCAATAATCGCCTGGCAA 58.154 45.000 20.29 0.00 33.19 4.52
1929 3051 1.846007 AAACCAATAATCGCCTGGCA 58.154 45.000 20.29 6.38 33.19 4.92
1930 3052 2.794631 CGAAAACCAATAATCGCCTGGC 60.795 50.000 9.11 9.11 33.19 4.85
1931 3053 3.065019 CGAAAACCAATAATCGCCTGG 57.935 47.619 0.00 0.00 36.24 4.45
1936 3058 4.717991 TGAAGTGCGAAAACCAATAATCG 58.282 39.130 0.00 0.00 38.28 3.34
1940 3062 3.745799 TCCTGAAGTGCGAAAACCAATA 58.254 40.909 0.00 0.00 0.00 1.90
1943 3065 1.593196 CTCCTGAAGTGCGAAAACCA 58.407 50.000 0.00 0.00 0.00 3.67
1944 3066 0.875059 CCTCCTGAAGTGCGAAAACC 59.125 55.000 0.00 0.00 0.00 3.27
1945 3067 0.238553 GCCTCCTGAAGTGCGAAAAC 59.761 55.000 0.00 0.00 0.00 2.43
1950 3072 0.176680 ATACAGCCTCCTGAAGTGCG 59.823 55.000 0.00 0.00 41.77 5.34
1951 3073 2.409948 AATACAGCCTCCTGAAGTGC 57.590 50.000 0.00 0.00 41.77 4.40
1952 3074 4.818546 CCATTAATACAGCCTCCTGAAGTG 59.181 45.833 0.00 0.00 41.77 3.16
1953 3075 4.687219 GCCATTAATACAGCCTCCTGAAGT 60.687 45.833 0.00 0.00 41.77 3.01
1954 3076 3.817647 GCCATTAATACAGCCTCCTGAAG 59.182 47.826 0.00 0.00 41.77 3.02
1955 3077 3.435026 GGCCATTAATACAGCCTCCTGAA 60.435 47.826 13.48 0.00 41.77 3.02
1958 3080 1.425448 GGGCCATTAATACAGCCTCCT 59.575 52.381 17.96 0.00 45.07 3.69
1960 3082 2.508526 CAGGGCCATTAATACAGCCTC 58.491 52.381 17.96 11.07 45.07 4.70
1962 3084 0.961753 GCAGGGCCATTAATACAGCC 59.038 55.000 6.18 12.70 44.99 4.85
1963 3085 1.338020 GTGCAGGGCCATTAATACAGC 59.662 52.381 6.18 0.00 0.00 4.40
1964 3086 2.653726 TGTGCAGGGCCATTAATACAG 58.346 47.619 6.18 0.00 0.00 2.74
1965 3087 2.816777 TGTGCAGGGCCATTAATACA 57.183 45.000 6.18 0.00 0.00 2.29
1966 3088 3.023832 ACTTGTGCAGGGCCATTAATAC 58.976 45.455 6.18 0.00 0.00 1.89
1967 3089 3.287222 GACTTGTGCAGGGCCATTAATA 58.713 45.455 6.18 0.00 0.00 0.98
1971 3093 1.607467 GGACTTGTGCAGGGCCATT 60.607 57.895 6.18 0.00 0.00 3.16
1972 3094 2.036256 GGACTTGTGCAGGGCCAT 59.964 61.111 6.18 0.00 0.00 4.40
1974 3096 2.674380 CTGGACTTGTGCAGGGCC 60.674 66.667 13.35 0.00 0.00 5.80
1977 3099 1.233019 CTGAACTGGACTTGTGCAGG 58.767 55.000 22.49 8.21 37.42 4.85
1981 3103 2.542411 GCAAAGCTGAACTGGACTTGTG 60.542 50.000 0.00 0.00 0.00 3.33
1983 3105 1.952296 AGCAAAGCTGAACTGGACTTG 59.048 47.619 0.00 0.00 37.57 3.16
1984 3106 2.355010 AGCAAAGCTGAACTGGACTT 57.645 45.000 0.00 0.00 37.57 3.01
1995 3117 1.831580 GGGATTCAGACAGCAAAGCT 58.168 50.000 0.00 0.00 40.77 3.74
1996 3118 0.449388 CGGGATTCAGACAGCAAAGC 59.551 55.000 0.00 0.00 0.00 3.51
1997 3119 1.466167 CACGGGATTCAGACAGCAAAG 59.534 52.381 0.00 0.00 0.00 2.77
1998 3120 1.071542 TCACGGGATTCAGACAGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
2000 3122 0.684535 TTCACGGGATTCAGACAGCA 59.315 50.000 0.00 0.00 0.00 4.41
2001 3123 2.029838 ATTCACGGGATTCAGACAGC 57.970 50.000 0.00 0.00 0.00 4.40
2002 3124 4.697514 ACATATTCACGGGATTCAGACAG 58.302 43.478 0.00 0.00 0.00 3.51
2003 3125 4.753516 ACATATTCACGGGATTCAGACA 57.246 40.909 0.00 0.00 0.00 3.41
2004 3126 5.006746 GTCAACATATTCACGGGATTCAGAC 59.993 44.000 0.00 0.00 0.00 3.51
2005 3127 5.116180 GTCAACATATTCACGGGATTCAGA 58.884 41.667 0.00 0.00 0.00 3.27
2006 3128 4.025730 CGTCAACATATTCACGGGATTCAG 60.026 45.833 0.00 0.00 0.00 3.02
2008 3130 3.247648 CCGTCAACATATTCACGGGATTC 59.752 47.826 0.00 0.00 46.60 2.52
2009 3131 3.202906 CCGTCAACATATTCACGGGATT 58.797 45.455 0.00 0.00 46.60 3.01
2011 3133 2.303163 CCGTCAACATATTCACGGGA 57.697 50.000 0.00 0.00 46.60 5.14
2014 3136 3.717707 AGATCCCGTCAACATATTCACG 58.282 45.455 0.00 0.00 0.00 4.35
2015 3137 5.465724 GGTTAGATCCCGTCAACATATTCAC 59.534 44.000 0.00 0.00 0.00 3.18
2016 3138 5.129650 TGGTTAGATCCCGTCAACATATTCA 59.870 40.000 0.00 0.00 0.00 2.57
2017 3139 5.607477 TGGTTAGATCCCGTCAACATATTC 58.393 41.667 0.00 0.00 0.00 1.75
2018 3140 5.623956 TGGTTAGATCCCGTCAACATATT 57.376 39.130 0.00 0.00 0.00 1.28
2020 3142 4.039973 GGATGGTTAGATCCCGTCAACATA 59.960 45.833 9.95 0.00 39.36 2.29
2022 3144 2.169769 GGATGGTTAGATCCCGTCAACA 59.830 50.000 9.95 0.00 39.36 3.33
2023 3145 2.434702 AGGATGGTTAGATCCCGTCAAC 59.565 50.000 9.95 0.00 42.81 3.18
2024 3146 2.759355 AGGATGGTTAGATCCCGTCAA 58.241 47.619 9.95 0.00 42.81 3.18
2025 3147 2.471815 AGGATGGTTAGATCCCGTCA 57.528 50.000 9.95 0.00 42.81 4.35
2026 3148 3.228453 TGTAGGATGGTTAGATCCCGTC 58.772 50.000 0.00 1.17 42.81 4.79
2028 3150 3.641906 AGTTGTAGGATGGTTAGATCCCG 59.358 47.826 0.00 0.00 42.81 5.14
2029 3151 5.130477 TGAAGTTGTAGGATGGTTAGATCCC 59.870 44.000 0.00 0.00 42.81 3.85
2030 3152 6.235231 TGAAGTTGTAGGATGGTTAGATCC 57.765 41.667 0.00 0.00 42.21 3.36
2032 3154 5.131142 CCCTGAAGTTGTAGGATGGTTAGAT 59.869 44.000 4.66 0.00 36.11 1.98
2033 3155 4.469945 CCCTGAAGTTGTAGGATGGTTAGA 59.530 45.833 4.66 0.00 36.11 2.10
2034 3156 4.384208 CCCCTGAAGTTGTAGGATGGTTAG 60.384 50.000 4.66 0.00 36.11 2.34
2036 3158 2.308866 CCCCTGAAGTTGTAGGATGGTT 59.691 50.000 4.66 0.00 36.11 3.67
2037 3159 1.916181 CCCCTGAAGTTGTAGGATGGT 59.084 52.381 4.66 0.00 36.11 3.55
2038 3160 1.916181 ACCCCTGAAGTTGTAGGATGG 59.084 52.381 4.66 1.84 36.11 3.51
2040 3162 3.397955 ACAAACCCCTGAAGTTGTAGGAT 59.602 43.478 4.66 0.00 36.11 3.24
2041 3163 2.781174 ACAAACCCCTGAAGTTGTAGGA 59.219 45.455 4.66 0.00 36.11 2.94
2042 3164 3.223674 ACAAACCCCTGAAGTTGTAGG 57.776 47.619 0.00 0.00 0.00 3.18
2043 3165 6.264518 ACATTAACAAACCCCTGAAGTTGTAG 59.735 38.462 0.00 0.00 0.00 2.74
2045 3167 4.959839 ACATTAACAAACCCCTGAAGTTGT 59.040 37.500 0.00 0.00 0.00 3.32
2046 3168 5.301805 AGACATTAACAAACCCCTGAAGTTG 59.698 40.000 0.00 0.00 0.00 3.16
2047 3169 5.301805 CAGACATTAACAAACCCCTGAAGTT 59.698 40.000 0.00 0.00 0.00 2.66
2048 3170 4.827284 CAGACATTAACAAACCCCTGAAGT 59.173 41.667 0.00 0.00 0.00 3.01
2049 3171 5.070001 TCAGACATTAACAAACCCCTGAAG 58.930 41.667 0.00 0.00 0.00 3.02
2050 3172 5.055265 TCAGACATTAACAAACCCCTGAA 57.945 39.130 0.00 0.00 0.00 3.02
2054 3176 5.125578 GGAGATTCAGACATTAACAAACCCC 59.874 44.000 0.00 0.00 0.00 4.95
2055 3177 5.946377 AGGAGATTCAGACATTAACAAACCC 59.054 40.000 0.00 0.00 0.00 4.11
2057 3179 9.220767 AGTAAGGAGATTCAGACATTAACAAAC 57.779 33.333 0.00 0.00 0.00 2.93
2058 3180 9.793259 AAGTAAGGAGATTCAGACATTAACAAA 57.207 29.630 0.00 0.00 0.00 2.83
2059 3181 9.436957 GAAGTAAGGAGATTCAGACATTAACAA 57.563 33.333 0.00 0.00 0.00 2.83
2071 3193 3.181474 CGGACCCTGAAGTAAGGAGATTC 60.181 52.174 0.00 0.00 40.02 2.52
2072 3194 2.766828 CGGACCCTGAAGTAAGGAGATT 59.233 50.000 0.00 0.00 40.02 2.40
2073 3195 2.389715 CGGACCCTGAAGTAAGGAGAT 58.610 52.381 0.00 0.00 40.02 2.75
2075 3197 0.824759 CCGGACCCTGAAGTAAGGAG 59.175 60.000 0.00 0.00 40.02 3.69
2076 3198 0.410663 TCCGGACCCTGAAGTAAGGA 59.589 55.000 0.00 0.00 40.02 3.36
2077 3199 1.497161 ATCCGGACCCTGAAGTAAGG 58.503 55.000 6.12 0.00 37.05 2.69
2078 3200 2.500098 TGAATCCGGACCCTGAAGTAAG 59.500 50.000 6.12 0.00 0.00 2.34
2081 3203 0.613777 GTGAATCCGGACCCTGAAGT 59.386 55.000 6.12 0.00 0.00 3.01
2084 3206 1.550130 GGTGTGAATCCGGACCCTGA 61.550 60.000 6.12 0.00 0.00 3.86
2085 3207 1.078426 GGTGTGAATCCGGACCCTG 60.078 63.158 6.12 0.00 0.00 4.45
2086 3208 1.537889 TGGTGTGAATCCGGACCCT 60.538 57.895 6.12 0.00 0.00 4.34
2087 3209 1.078426 CTGGTGTGAATCCGGACCC 60.078 63.158 6.12 1.25 33.49 4.46
2088 3210 0.899720 TACTGGTGTGAATCCGGACC 59.100 55.000 6.12 2.87 35.49 4.46
2090 3212 1.933021 ACTACTGGTGTGAATCCGGA 58.067 50.000 6.61 6.61 35.49 5.14
2091 3213 5.524971 TTATACTACTGGTGTGAATCCGG 57.475 43.478 0.00 0.00 37.36 5.14
2092 3214 6.570692 AGTTTATACTACTGGTGTGAATCCG 58.429 40.000 0.00 0.00 31.21 4.18
2093 3215 7.822822 ACAAGTTTATACTACTGGTGTGAATCC 59.177 37.037 0.00 0.00 33.17 3.01
2094 3216 8.773404 ACAAGTTTATACTACTGGTGTGAATC 57.227 34.615 0.00 0.00 33.17 2.52
2095 3217 9.216117 GAACAAGTTTATACTACTGGTGTGAAT 57.784 33.333 0.00 0.00 30.26 2.57
2096 3218 7.658575 GGAACAAGTTTATACTACTGGTGTGAA 59.341 37.037 0.00 0.00 30.26 3.18
2098 3220 7.117812 CAGGAACAAGTTTATACTACTGGTGTG 59.882 40.741 0.00 0.00 30.26 3.82
2099 3221 7.159372 CAGGAACAAGTTTATACTACTGGTGT 58.841 38.462 0.00 0.00 30.26 4.16
2101 3223 7.312415 ACAGGAACAAGTTTATACTACTGGT 57.688 36.000 0.00 0.00 33.17 4.00
2102 3224 7.876068 TGAACAGGAACAAGTTTATACTACTGG 59.124 37.037 0.00 0.00 33.17 4.00
2105 3227 8.597662 TGTGAACAGGAACAAGTTTATACTAC 57.402 34.615 0.00 0.00 33.17 2.73
2107 3229 9.216117 GTATGTGAACAGGAACAAGTTTATACT 57.784 33.333 0.00 0.00 35.68 2.12
2108 3230 8.995220 TGTATGTGAACAGGAACAAGTTTATAC 58.005 33.333 0.00 0.00 0.00 1.47
2112 3234 5.650266 TGTGTATGTGAACAGGAACAAGTTT 59.350 36.000 0.00 0.00 0.00 2.66
2143 3398 0.179181 GCCATGTCAATGTGTGCTCG 60.179 55.000 0.00 0.00 31.27 5.03
2220 3475 2.689983 CAGTTCTTTTGGGTTGAGCTGT 59.310 45.455 0.00 0.00 35.38 4.40
2285 3541 5.445407 GCACACACATGATGAAATGAAATGC 60.445 40.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.