Multiple sequence alignment - TraesCS3B01G400400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G400400 chr3B 100.000 5081 0 0 1 5081 632530993 632536073 0.000000e+00 9383
1 TraesCS3B01G400400 chr3B 91.519 2252 141 20 2579 4799 58471270 58473502 0.000000e+00 3055
2 TraesCS3B01G400400 chr3B 90.178 2138 147 35 2703 4798 218217575 218215459 0.000000e+00 2726
3 TraesCS3B01G400400 chr3B 92.198 1897 131 12 2558 4442 219744775 219742884 0.000000e+00 2667
4 TraesCS3B01G400400 chr3B 90.836 1615 126 12 1 1605 58469655 58471257 0.000000e+00 2143
5 TraesCS3B01G400400 chr3B 90.881 1612 125 12 6 1605 219746376 219744775 0.000000e+00 2143
6 TraesCS3B01G400400 chr3B 90.695 1612 128 11 6 1605 218219346 218217745 0.000000e+00 2126
7 TraesCS3B01G400400 chr3B 90.695 1612 128 11 6 1605 218225470 218223869 0.000000e+00 2126
8 TraesCS3B01G400400 chr3B 90.331 362 26 7 4445 4798 219742816 219742456 2.770000e-127 466
9 TraesCS3B01G400400 chr6D 95.595 4813 189 14 1 4796 44190977 44195783 0.000000e+00 7692
10 TraesCS3B01G400400 chr3D 95.510 4811 196 17 1 4800 512069230 512064429 0.000000e+00 7670
11 TraesCS3B01G400400 chr3D 91.228 285 21 2 4796 5079 475584540 475584821 7.980000e-103 385
12 TraesCS3B01G400400 chr7D 95.359 4805 183 26 1 4796 95227001 95222228 0.000000e+00 7601
13 TraesCS3B01G400400 chr4B 93.240 2722 152 18 2077 4795 155103143 155105835 0.000000e+00 3978
14 TraesCS3B01G400400 chr4B 93.792 2094 123 5 1 2091 155094352 155096441 0.000000e+00 3140
15 TraesCS3B01G400400 chr1A 86.900 2748 292 50 2079 4795 293124077 293126787 0.000000e+00 3018
16 TraesCS3B01G400400 chr7B 86.715 2755 299 44 2079 4795 684525880 684528605 0.000000e+00 2998
17 TraesCS3B01G400400 chr7A 91.047 2245 143 27 2558 4795 169765806 169767999 0.000000e+00 2979
18 TraesCS3B01G400400 chr7A 90.830 1614 121 13 7 1605 169764205 169765806 0.000000e+00 2135
19 TraesCS3B01G400400 chr5B 86.520 2767 301 46 2079 4795 271207902 271205158 0.000000e+00 2977
20 TraesCS3B01G400400 chr3A 85.869 2774 311 55 2079 4796 704255859 704258607 0.000000e+00 2876
21 TraesCS3B01G400400 chr3A 91.280 1594 93 20 2558 4145 651434877 651433324 0.000000e+00 2132
22 TraesCS3B01G400400 chr3A 90.509 1612 126 14 7 1605 651436474 651434877 0.000000e+00 2104
23 TraesCS3B01G400400 chr3A 92.089 316 19 4 4136 4447 651433157 651432844 1.680000e-119 440
24 TraesCS3B01G400400 chr1B 91.885 2021 141 16 2794 4796 311315602 311317617 0.000000e+00 2802
25 TraesCS3B01G400400 chr1B 90.694 591 52 3 1412 2002 296532711 296533298 0.000000e+00 784
26 TraesCS3B01G400400 chr4D 96.738 1441 46 1 2529 3968 500382329 500380889 0.000000e+00 2399
27 TraesCS3B01G400400 chr6B 90.186 591 55 3 1412 2002 31701783 31702370 0.000000e+00 767
28 TraesCS3B01G400400 chr2B 80.137 1022 137 36 3787 4795 700830382 700831350 0.000000e+00 702
29 TraesCS3B01G400400 chr2A 80.455 220 42 1 1597 1815 593824116 593824335 3.150000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G400400 chr3B 632530993 632536073 5080 False 9383.000000 9383 100.000000 1 5081 1 chr3B.!!$F1 5080
1 TraesCS3B01G400400 chr3B 58469655 58473502 3847 False 2599.000000 3055 91.177500 1 4799 2 chr3B.!!$F2 4798
2 TraesCS3B01G400400 chr3B 218215459 218219346 3887 True 2426.000000 2726 90.436500 6 4798 2 chr3B.!!$R2 4792
3 TraesCS3B01G400400 chr3B 218223869 218225470 1601 True 2126.000000 2126 90.695000 6 1605 1 chr3B.!!$R1 1599
4 TraesCS3B01G400400 chr3B 219742456 219746376 3920 True 1758.666667 2667 91.136667 6 4798 3 chr3B.!!$R3 4792
5 TraesCS3B01G400400 chr6D 44190977 44195783 4806 False 7692.000000 7692 95.595000 1 4796 1 chr6D.!!$F1 4795
6 TraesCS3B01G400400 chr3D 512064429 512069230 4801 True 7670.000000 7670 95.510000 1 4800 1 chr3D.!!$R1 4799
7 TraesCS3B01G400400 chr7D 95222228 95227001 4773 True 7601.000000 7601 95.359000 1 4796 1 chr7D.!!$R1 4795
8 TraesCS3B01G400400 chr4B 155103143 155105835 2692 False 3978.000000 3978 93.240000 2077 4795 1 chr4B.!!$F2 2718
9 TraesCS3B01G400400 chr4B 155094352 155096441 2089 False 3140.000000 3140 93.792000 1 2091 1 chr4B.!!$F1 2090
10 TraesCS3B01G400400 chr1A 293124077 293126787 2710 False 3018.000000 3018 86.900000 2079 4795 1 chr1A.!!$F1 2716
11 TraesCS3B01G400400 chr7B 684525880 684528605 2725 False 2998.000000 2998 86.715000 2079 4795 1 chr7B.!!$F1 2716
12 TraesCS3B01G400400 chr7A 169764205 169767999 3794 False 2557.000000 2979 90.938500 7 4795 2 chr7A.!!$F1 4788
13 TraesCS3B01G400400 chr5B 271205158 271207902 2744 True 2977.000000 2977 86.520000 2079 4795 1 chr5B.!!$R1 2716
14 TraesCS3B01G400400 chr3A 704255859 704258607 2748 False 2876.000000 2876 85.869000 2079 4796 1 chr3A.!!$F1 2717
15 TraesCS3B01G400400 chr3A 651432844 651436474 3630 True 1558.666667 2132 91.292667 7 4447 3 chr3A.!!$R1 4440
16 TraesCS3B01G400400 chr1B 311315602 311317617 2015 False 2802.000000 2802 91.885000 2794 4796 1 chr1B.!!$F2 2002
17 TraesCS3B01G400400 chr1B 296532711 296533298 587 False 784.000000 784 90.694000 1412 2002 1 chr1B.!!$F1 590
18 TraesCS3B01G400400 chr4D 500380889 500382329 1440 True 2399.000000 2399 96.738000 2529 3968 1 chr4D.!!$R1 1439
19 TraesCS3B01G400400 chr6B 31701783 31702370 587 False 767.000000 767 90.186000 1412 2002 1 chr6B.!!$F1 590
20 TraesCS3B01G400400 chr2B 700830382 700831350 968 False 702.000000 702 80.137000 3787 4795 1 chr2B.!!$F1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.686112 CCCTCCCTCCTGAGTCTCAC 60.686 65.000 0.00 0.0 0.00 3.51 F
670 694 1.486439 GGTTGTGCATGAACCAAACG 58.514 50.000 20.38 0.0 42.26 3.60 F
1633 1666 0.035056 ACCCTCCTCGCATGGAAAAG 60.035 55.000 0.00 0.0 35.43 2.27 F
1681 1714 1.066430 TGGAGGCAACATAAGTCCGAC 60.066 52.381 0.00 0.0 41.41 4.79 F
3117 3214 3.168035 TGGTTCATAATGGTGGCAGTT 57.832 42.857 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1081 2.074547 TGTTCGATCGGTTCTTCCAC 57.925 50.000 16.41 0.66 35.57 4.02 R
1712 1746 2.697751 TGTTGTAATTGGCTTTGGTGCT 59.302 40.909 0.00 0.00 0.00 4.40 R
3236 3333 3.142174 GGAGTTTCTTGGTTCTGGACAG 58.858 50.000 0.00 0.00 0.00 3.51 R
3398 3503 5.331902 TCTCAAGCAAAGTTTCTTTGTTCG 58.668 37.500 18.94 7.21 0.00 3.95 R
4988 5565 0.036577 GAGCATGAGGATGATCCCCG 60.037 60.000 8.08 0.00 37.19 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.686112 CCCTCCCTCCTGAGTCTCAC 60.686 65.000 0.00 0.00 0.00 3.51
169 172 4.691860 ATGACTTGAAGATTTTGCCTCG 57.308 40.909 0.00 0.00 0.00 4.63
192 199 2.356535 CCCCTTCTTGGTTCAGATCTGG 60.357 54.545 22.42 5.51 0.00 3.86
206 213 4.140686 TCAGATCTGGCCCTTCTATCCTTA 60.141 45.833 22.42 0.00 0.00 2.69
207 214 4.594920 CAGATCTGGCCCTTCTATCCTTAA 59.405 45.833 15.38 0.00 0.00 1.85
390 397 2.017049 CTGCACCATTACTACCTTGGC 58.983 52.381 0.00 0.00 33.66 4.52
428 437 9.883142 CTTCATAGACTTTCTTTATGGAACTCT 57.117 33.333 0.00 0.00 0.00 3.24
521 542 2.806382 CGGCCCCCAATAATTTGAATGC 60.806 50.000 0.00 0.00 34.60 3.56
526 548 5.702209 GCCCCCAATAATTTGAATGCTAATG 59.298 40.000 0.00 0.00 34.60 1.90
634 658 8.708742 TGTTAGTGACTTGAGAATAACATTTCG 58.291 33.333 0.00 0.00 30.47 3.46
670 694 1.486439 GGTTGTGCATGAACCAAACG 58.514 50.000 20.38 0.00 42.26 3.60
729 753 8.310382 CCTTGACCTTATCATCCTCTTACTATG 58.690 40.741 0.00 0.00 37.11 2.23
752 776 7.078249 TGCATGGATAGTGTTATACCTGAAT 57.922 36.000 0.00 0.00 0.00 2.57
837 866 7.648142 TGTGGTCTGACTTATTTTGTTGATTC 58.352 34.615 7.85 0.00 0.00 2.52
861 890 8.026396 TCCAGGGGTAGTAATTACTTGATAAC 57.974 38.462 22.66 13.94 37.73 1.89
953 985 7.119262 CGAGTAGGACCACAAAATATTGTCTTT 59.881 37.037 0.00 0.00 46.78 2.52
954 986 8.706322 AGTAGGACCACAAAATATTGTCTTTT 57.294 30.769 0.00 0.00 46.78 2.27
1007 1040 3.056588 TGTTGCAGCAGATATGTCACA 57.943 42.857 0.00 0.00 0.00 3.58
1092 1125 6.927416 TCATAATTCTGCTGCAAAAGATGTT 58.073 32.000 3.02 0.00 0.00 2.71
1372 1405 3.473625 TGCAATGACATAGATCAGCCAG 58.526 45.455 0.00 0.00 30.46 4.85
1432 1465 1.133025 CGGTTGCAAGGAATGGATCAC 59.867 52.381 0.00 0.00 0.00 3.06
1434 1467 3.620488 GGTTGCAAGGAATGGATCACTA 58.380 45.455 0.00 0.00 0.00 2.74
1633 1666 0.035056 ACCCTCCTCGCATGGAAAAG 60.035 55.000 0.00 0.00 35.43 2.27
1681 1714 1.066430 TGGAGGCAACATAAGTCCGAC 60.066 52.381 0.00 0.00 41.41 4.79
1744 1778 8.916628 AAGCCAATTACAACAATAAACCAAAT 57.083 26.923 0.00 0.00 0.00 2.32
1878 1912 7.272037 TGCTGTGTAGATACGATGAAAGATA 57.728 36.000 0.00 0.00 0.00 1.98
1891 1925 8.382030 ACGATGAAAGATATGCACATAATTGA 57.618 30.769 0.00 0.00 0.00 2.57
1929 1963 4.080751 TGGTAGGGGATTAGTGCTACAAAC 60.081 45.833 0.00 0.00 0.00 2.93
1967 2001 7.997482 TCAATGAGGAAGTCTACACATACTAC 58.003 38.462 0.00 0.00 0.00 2.73
2198 2232 6.832520 ATGCTCATGTGGTACATTTACAAA 57.167 33.333 0.00 0.00 44.52 2.83
2208 2242 5.467399 TGGTACATTTACAAACTCTCAACCG 59.533 40.000 0.00 0.00 0.00 4.44
2230 2264 8.835467 ACCGTTCGTATTTGAATTTGATATTG 57.165 30.769 0.00 0.00 0.00 1.90
2443 2478 6.279513 ACTTTTTGATGTTTCCACTTCACA 57.720 33.333 0.00 0.00 36.93 3.58
2664 2733 6.930667 TTTTGTGGACTAACCTTTCTGTAC 57.069 37.500 0.00 0.00 39.86 2.90
3022 3118 4.992688 TGCTGAGTTTTAAGTTGTTGTGG 58.007 39.130 0.00 0.00 0.00 4.17
3117 3214 3.168035 TGGTTCATAATGGTGGCAGTT 57.832 42.857 0.00 0.00 0.00 3.16
3121 3218 3.431673 TCATAATGGTGGCAGTTCACA 57.568 42.857 0.00 0.00 39.27 3.58
3236 3333 6.963805 GTCTTTACTTGTTGCTATCAGAATGC 59.036 38.462 0.00 0.00 34.76 3.56
3398 3503 5.446473 CGTCTTGCTATCAGAATGTTGTTCC 60.446 44.000 0.00 0.00 37.40 3.62
3437 3542 2.324860 TGAGAATGTTAGTGCACGTCG 58.675 47.619 12.01 0.00 0.00 5.12
3438 3543 2.030628 TGAGAATGTTAGTGCACGTCGA 60.031 45.455 12.01 0.00 0.00 4.20
3636 3801 1.598130 GGTTCGCTGAGCTGGTTGT 60.598 57.895 1.78 0.00 0.00 3.32
3674 3839 6.711277 ACCTGTAAGAGTGCTCATTCATTTA 58.289 36.000 1.82 0.00 34.07 1.40
3873 4042 0.172578 CTGGGCAGTGCATGTTGATG 59.827 55.000 18.61 0.00 0.00 3.07
3965 4136 1.272872 ACAAAGATTGCATGGCCCTCT 60.273 47.619 0.00 0.00 0.00 3.69
4017 4188 9.445878 CCTCTATTATTACTTGCATCATGTCAT 57.554 33.333 0.00 0.00 0.00 3.06
4034 4205 4.286101 TGTCATTGCATTGTGTGTTAACG 58.714 39.130 8.36 0.00 0.00 3.18
4121 4294 5.808042 AGTGTACTGCAATGATGATGTTC 57.192 39.130 0.00 0.00 0.00 3.18
4204 4578 4.241590 TGATGTTCTTGTTGGATGTTGC 57.758 40.909 0.00 0.00 0.00 4.17
4380 4763 8.593492 TGATATATGATTTCTTCCTGTTGTCG 57.407 34.615 0.00 0.00 0.00 4.35
4807 5384 4.703897 TGTTGTAGTGACAAGAGGAAAGG 58.296 43.478 0.00 0.00 46.20 3.11
4808 5385 4.407621 TGTTGTAGTGACAAGAGGAAAGGA 59.592 41.667 0.00 0.00 46.20 3.36
4809 5386 4.602340 TGTAGTGACAAGAGGAAAGGAC 57.398 45.455 0.00 0.00 30.68 3.85
4810 5387 3.964688 TGTAGTGACAAGAGGAAAGGACA 59.035 43.478 0.00 0.00 30.68 4.02
4811 5388 3.760580 AGTGACAAGAGGAAAGGACAG 57.239 47.619 0.00 0.00 0.00 3.51
4812 5389 3.309296 AGTGACAAGAGGAAAGGACAGA 58.691 45.455 0.00 0.00 0.00 3.41
4813 5390 3.070302 AGTGACAAGAGGAAAGGACAGAC 59.930 47.826 0.00 0.00 0.00 3.51
4814 5391 2.035961 TGACAAGAGGAAAGGACAGACG 59.964 50.000 0.00 0.00 0.00 4.18
4815 5392 2.296471 GACAAGAGGAAAGGACAGACGA 59.704 50.000 0.00 0.00 0.00 4.20
4816 5393 2.036089 ACAAGAGGAAAGGACAGACGAC 59.964 50.000 0.00 0.00 0.00 4.34
4817 5394 1.996798 AGAGGAAAGGACAGACGACA 58.003 50.000 0.00 0.00 0.00 4.35
4818 5395 1.614413 AGAGGAAAGGACAGACGACAC 59.386 52.381 0.00 0.00 0.00 3.67
4819 5396 1.340248 GAGGAAAGGACAGACGACACA 59.660 52.381 0.00 0.00 0.00 3.72
4820 5397 1.971357 AGGAAAGGACAGACGACACAT 59.029 47.619 0.00 0.00 0.00 3.21
4821 5398 2.069273 GGAAAGGACAGACGACACATG 58.931 52.381 0.00 0.00 0.00 3.21
4822 5399 2.548067 GGAAAGGACAGACGACACATGT 60.548 50.000 0.00 0.00 0.00 3.21
4823 5400 2.910688 AAGGACAGACGACACATGTT 57.089 45.000 0.00 0.00 0.00 2.71
4824 5401 2.440539 AGGACAGACGACACATGTTC 57.559 50.000 0.00 0.00 0.00 3.18
4825 5402 1.686587 AGGACAGACGACACATGTTCA 59.313 47.619 0.00 0.00 0.00 3.18
4826 5403 2.102420 AGGACAGACGACACATGTTCAA 59.898 45.455 0.00 0.00 0.00 2.69
4827 5404 2.869801 GGACAGACGACACATGTTCAAA 59.130 45.455 0.00 0.00 0.00 2.69
4828 5405 3.311322 GGACAGACGACACATGTTCAAAA 59.689 43.478 0.00 0.00 0.00 2.44
4829 5406 4.201871 GGACAGACGACACATGTTCAAAAA 60.202 41.667 0.00 0.00 0.00 1.94
4830 5407 4.658071 ACAGACGACACATGTTCAAAAAC 58.342 39.130 0.00 0.00 35.85 2.43
4843 5420 6.998968 TGTTCAAAAACATTGGCAAGAAAT 57.001 29.167 5.96 0.00 40.45 2.17
4844 5421 7.014092 TGTTCAAAAACATTGGCAAGAAATC 57.986 32.000 5.96 0.00 40.45 2.17
4845 5422 6.822676 TGTTCAAAAACATTGGCAAGAAATCT 59.177 30.769 5.96 0.00 40.45 2.40
4846 5423 7.336427 TGTTCAAAAACATTGGCAAGAAATCTT 59.664 29.630 5.96 0.00 40.45 2.40
4847 5424 7.481275 TCAAAAACATTGGCAAGAAATCTTC 57.519 32.000 5.96 0.00 33.11 2.87
4848 5425 7.046652 TCAAAAACATTGGCAAGAAATCTTCA 58.953 30.769 5.96 0.00 33.11 3.02
4849 5426 7.716123 TCAAAAACATTGGCAAGAAATCTTCAT 59.284 29.630 5.96 0.00 33.11 2.57
4850 5427 8.347035 CAAAAACATTGGCAAGAAATCTTCATT 58.653 29.630 5.96 0.00 33.11 2.57
4851 5428 7.429636 AAACATTGGCAAGAAATCTTCATTG 57.570 32.000 5.96 0.00 33.11 2.82
4852 5429 6.349243 ACATTGGCAAGAAATCTTCATTGA 57.651 33.333 5.96 0.00 33.11 2.57
4853 5430 6.761312 ACATTGGCAAGAAATCTTCATTGAA 58.239 32.000 5.96 0.00 33.11 2.69
4854 5431 6.872020 ACATTGGCAAGAAATCTTCATTGAAG 59.128 34.615 18.49 18.49 40.65 3.02
4855 5432 6.409524 TTGGCAAGAAATCTTCATTGAAGT 57.590 33.333 22.44 10.07 40.24 3.01
4856 5433 5.775686 TGGCAAGAAATCTTCATTGAAGTG 58.224 37.500 22.44 14.61 40.24 3.16
4857 5434 5.166398 GGCAAGAAATCTTCATTGAAGTGG 58.834 41.667 22.44 5.39 40.24 4.00
4858 5435 5.047802 GGCAAGAAATCTTCATTGAAGTGGA 60.048 40.000 22.44 7.63 40.24 4.02
4859 5436 6.350780 GGCAAGAAATCTTCATTGAAGTGGAT 60.351 38.462 22.44 9.42 40.24 3.41
4860 5437 7.095270 GCAAGAAATCTTCATTGAAGTGGATT 58.905 34.615 22.44 14.04 40.24 3.01
4861 5438 7.601508 GCAAGAAATCTTCATTGAAGTGGATTT 59.398 33.333 22.44 19.91 40.24 2.17
4862 5439 9.136952 CAAGAAATCTTCATTGAAGTGGATTTC 57.863 33.333 26.26 26.26 38.82 2.17
4863 5440 8.647256 AGAAATCTTCATTGAAGTGGATTTCT 57.353 30.769 28.30 28.30 41.04 2.52
4864 5441 8.521176 AGAAATCTTCATTGAAGTGGATTTCTG 58.479 33.333 30.48 9.83 42.40 3.02
4865 5442 5.633830 TCTTCATTGAAGTGGATTTCTGC 57.366 39.130 22.44 0.00 40.24 4.26
4866 5443 5.072055 TCTTCATTGAAGTGGATTTCTGCA 58.928 37.500 22.44 0.08 40.24 4.41
4867 5444 5.535783 TCTTCATTGAAGTGGATTTCTGCAA 59.464 36.000 22.44 0.00 40.24 4.08
4868 5445 5.125100 TCATTGAAGTGGATTTCTGCAAC 57.875 39.130 0.00 0.00 33.88 4.17
4869 5446 4.022068 TCATTGAAGTGGATTTCTGCAACC 60.022 41.667 0.00 0.00 33.88 3.77
4870 5447 2.942804 TGAAGTGGATTTCTGCAACCA 58.057 42.857 0.00 0.00 0.00 3.67
4873 5450 1.327303 GTGGATTTCTGCAACCACCA 58.673 50.000 0.00 5.63 44.59 4.17
4874 5451 1.895131 GTGGATTTCTGCAACCACCAT 59.105 47.619 0.00 0.00 44.59 3.55
4875 5452 1.894466 TGGATTTCTGCAACCACCATG 59.106 47.619 0.00 0.00 0.00 3.66
4876 5453 1.404583 GGATTTCTGCAACCACCATGC 60.405 52.381 0.00 0.00 44.08 4.06
4877 5454 1.547372 GATTTCTGCAACCACCATGCT 59.453 47.619 0.00 0.00 44.14 3.79
4878 5455 0.961019 TTTCTGCAACCACCATGCTC 59.039 50.000 0.00 0.00 44.14 4.26
4879 5456 0.178995 TTCTGCAACCACCATGCTCA 60.179 50.000 0.00 0.00 44.14 4.26
4880 5457 0.890542 TCTGCAACCACCATGCTCAC 60.891 55.000 0.00 0.00 44.14 3.51
4881 5458 1.870055 CTGCAACCACCATGCTCACC 61.870 60.000 0.00 0.00 44.14 4.02
4882 5459 1.902918 GCAACCACCATGCTCACCA 60.903 57.895 0.00 0.00 40.64 4.17
4883 5460 1.959085 CAACCACCATGCTCACCAC 59.041 57.895 0.00 0.00 0.00 4.16
4884 5461 0.538057 CAACCACCATGCTCACCACT 60.538 55.000 0.00 0.00 0.00 4.00
4885 5462 0.185901 AACCACCATGCTCACCACTT 59.814 50.000 0.00 0.00 0.00 3.16
4886 5463 0.538057 ACCACCATGCTCACCACTTG 60.538 55.000 0.00 0.00 0.00 3.16
4887 5464 1.582968 CACCATGCTCACCACTTGC 59.417 57.895 0.00 0.00 0.00 4.01
4888 5465 1.604593 ACCATGCTCACCACTTGCC 60.605 57.895 0.00 0.00 0.00 4.52
4889 5466 1.604308 CCATGCTCACCACTTGCCA 60.604 57.895 0.00 0.00 0.00 4.92
4890 5467 0.968901 CCATGCTCACCACTTGCCAT 60.969 55.000 0.00 0.00 0.00 4.40
4891 5468 0.454600 CATGCTCACCACTTGCCATC 59.545 55.000 0.00 0.00 0.00 3.51
4892 5469 0.330604 ATGCTCACCACTTGCCATCT 59.669 50.000 0.00 0.00 0.00 2.90
4893 5470 0.111061 TGCTCACCACTTGCCATCTT 59.889 50.000 0.00 0.00 0.00 2.40
4894 5471 0.807496 GCTCACCACTTGCCATCTTC 59.193 55.000 0.00 0.00 0.00 2.87
4895 5472 1.081892 CTCACCACTTGCCATCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
4896 5473 0.321564 TCACCACTTGCCATCTTCGG 60.322 55.000 0.00 0.00 0.00 4.30
4897 5474 0.321564 CACCACTTGCCATCTTCGGA 60.322 55.000 0.00 0.00 0.00 4.55
4898 5475 0.321653 ACCACTTGCCATCTTCGGAC 60.322 55.000 0.00 0.00 0.00 4.79
4899 5476 0.321564 CCACTTGCCATCTTCGGACA 60.322 55.000 0.00 0.00 0.00 4.02
4900 5477 0.798776 CACTTGCCATCTTCGGACAC 59.201 55.000 0.00 0.00 0.00 3.67
4901 5478 0.670546 ACTTGCCATCTTCGGACACG 60.671 55.000 0.00 0.00 42.74 4.49
4912 5489 3.580904 CGGACACGAAGAAGAACCA 57.419 52.632 0.00 0.00 44.60 3.67
4913 5490 2.080286 CGGACACGAAGAAGAACCAT 57.920 50.000 0.00 0.00 44.60 3.55
4914 5491 1.993370 CGGACACGAAGAAGAACCATC 59.007 52.381 0.00 0.00 44.60 3.51
4915 5492 1.993370 GGACACGAAGAAGAACCATCG 59.007 52.381 0.00 0.00 40.90 3.84
4916 5493 1.390463 GACACGAAGAAGAACCATCGC 59.610 52.381 0.00 0.00 38.80 4.58
4917 5494 0.721718 CACGAAGAAGAACCATCGCC 59.278 55.000 0.00 0.00 38.80 5.54
4918 5495 0.391263 ACGAAGAAGAACCATCGCCC 60.391 55.000 0.00 0.00 38.80 6.13
4919 5496 0.108138 CGAAGAAGAACCATCGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
4920 5497 1.136305 CGAAGAAGAACCATCGCCCTA 59.864 52.381 0.00 0.00 0.00 3.53
4921 5498 2.224066 CGAAGAAGAACCATCGCCCTAT 60.224 50.000 0.00 0.00 0.00 2.57
4922 5499 2.918712 AGAAGAACCATCGCCCTATG 57.081 50.000 0.00 0.00 0.00 2.23
4923 5500 2.398588 AGAAGAACCATCGCCCTATGA 58.601 47.619 0.00 0.00 0.00 2.15
4924 5501 2.366916 AGAAGAACCATCGCCCTATGAG 59.633 50.000 0.00 0.00 0.00 2.90
4925 5502 1.051812 AGAACCATCGCCCTATGAGG 58.948 55.000 0.00 0.00 34.30 3.86
4926 5503 0.759346 GAACCATCGCCCTATGAGGT 59.241 55.000 0.00 0.00 31.93 3.85
4927 5504 0.759346 AACCATCGCCCTATGAGGTC 59.241 55.000 0.00 0.00 31.93 3.85
4928 5505 0.105453 ACCATCGCCCTATGAGGTCT 60.105 55.000 0.00 0.00 31.93 3.85
4929 5506 1.051812 CCATCGCCCTATGAGGTCTT 58.948 55.000 0.00 0.00 31.93 3.01
4930 5507 1.417890 CCATCGCCCTATGAGGTCTTT 59.582 52.381 0.00 0.00 31.93 2.52
4931 5508 2.487934 CATCGCCCTATGAGGTCTTTG 58.512 52.381 0.00 0.00 31.93 2.77
4932 5509 1.568504 TCGCCCTATGAGGTCTTTGT 58.431 50.000 0.00 0.00 31.93 2.83
4933 5510 1.207089 TCGCCCTATGAGGTCTTTGTG 59.793 52.381 0.00 0.00 31.93 3.33
4934 5511 1.207089 CGCCCTATGAGGTCTTTGTGA 59.793 52.381 0.00 0.00 31.93 3.58
4935 5512 2.739932 CGCCCTATGAGGTCTTTGTGAG 60.740 54.545 0.00 0.00 31.93 3.51
4936 5513 2.911484 CCCTATGAGGTCTTTGTGAGC 58.089 52.381 0.00 0.00 43.05 4.26
4937 5514 2.420687 CCCTATGAGGTCTTTGTGAGCC 60.421 54.545 0.00 0.00 43.71 4.70
4938 5515 2.503356 CCTATGAGGTCTTTGTGAGCCT 59.497 50.000 0.00 0.00 43.71 4.58
4939 5516 3.706594 CCTATGAGGTCTTTGTGAGCCTA 59.293 47.826 0.00 0.00 43.71 3.93
4940 5517 4.162320 CCTATGAGGTCTTTGTGAGCCTAA 59.838 45.833 0.00 0.00 43.71 2.69
4941 5518 3.685139 TGAGGTCTTTGTGAGCCTAAG 57.315 47.619 0.00 0.00 43.71 2.18
4942 5519 3.239449 TGAGGTCTTTGTGAGCCTAAGA 58.761 45.455 0.00 0.00 43.71 2.10
4943 5520 3.646162 TGAGGTCTTTGTGAGCCTAAGAA 59.354 43.478 0.00 0.00 43.71 2.52
4944 5521 4.249661 GAGGTCTTTGTGAGCCTAAGAAG 58.750 47.826 0.00 0.00 43.71 2.85
4945 5522 3.904339 AGGTCTTTGTGAGCCTAAGAAGA 59.096 43.478 0.00 0.00 43.71 2.87
4946 5523 4.020662 AGGTCTTTGTGAGCCTAAGAAGAG 60.021 45.833 0.00 0.00 43.71 2.85
4947 5524 4.249661 GTCTTTGTGAGCCTAAGAAGAGG 58.750 47.826 0.00 0.00 39.88 3.69
4955 5532 1.673168 CCTAAGAAGAGGCATGCCAC 58.327 55.000 37.18 31.11 38.92 5.01
4956 5533 1.673168 CTAAGAAGAGGCATGCCACC 58.327 55.000 37.18 27.00 38.92 4.61
4957 5534 0.255890 TAAGAAGAGGCATGCCACCC 59.744 55.000 37.18 24.21 38.92 4.61
4958 5535 2.825836 GAAGAGGCATGCCACCCG 60.826 66.667 37.18 0.00 38.92 5.28
4969 5546 3.762247 CCACCCGCAATGCCCTTG 61.762 66.667 0.00 0.00 37.94 3.61
4970 5547 2.990967 CACCCGCAATGCCCTTGT 60.991 61.111 0.00 0.00 37.18 3.16
4971 5548 2.203625 ACCCGCAATGCCCTTGTT 60.204 55.556 0.00 0.00 37.18 2.83
4972 5549 2.262292 CCCGCAATGCCCTTGTTG 59.738 61.111 0.00 0.00 37.18 3.33
4973 5550 2.573083 CCCGCAATGCCCTTGTTGT 61.573 57.895 0.00 0.00 37.18 3.32
4974 5551 1.367102 CCGCAATGCCCTTGTTGTT 59.633 52.632 0.00 0.00 37.18 2.83
4975 5552 0.945265 CCGCAATGCCCTTGTTGTTG 60.945 55.000 0.00 0.00 37.18 3.33
4976 5553 0.249405 CGCAATGCCCTTGTTGTTGT 60.249 50.000 0.00 0.00 37.18 3.32
4977 5554 1.219646 GCAATGCCCTTGTTGTTGTG 58.780 50.000 0.00 0.00 37.18 3.33
4978 5555 1.868469 CAATGCCCTTGTTGTTGTGG 58.132 50.000 0.00 0.00 0.00 4.17
4979 5556 0.106521 AATGCCCTTGTTGTTGTGGC 59.893 50.000 0.00 0.00 42.49 5.01
4980 5557 3.215245 GCCCTTGTTGTTGTGGCA 58.785 55.556 0.00 0.00 41.76 4.92
4981 5558 1.047596 TGCCCTTGTTGTTGTGGCAT 61.048 50.000 0.00 0.00 46.57 4.40
4982 5559 0.600782 GCCCTTGTTGTTGTGGCATG 60.601 55.000 0.00 0.00 41.76 4.06
4983 5560 0.752054 CCCTTGTTGTTGTGGCATGT 59.248 50.000 0.00 0.00 0.00 3.21
4984 5561 1.269726 CCCTTGTTGTTGTGGCATGTC 60.270 52.381 0.00 0.00 0.00 3.06
4985 5562 1.600164 CCTTGTTGTTGTGGCATGTCG 60.600 52.381 0.00 0.00 0.00 4.35
4986 5563 1.333308 CTTGTTGTTGTGGCATGTCGA 59.667 47.619 0.00 0.00 0.00 4.20
4987 5564 0.660488 TGTTGTTGTGGCATGTCGAC 59.340 50.000 9.11 9.11 0.00 4.20
4988 5565 0.040425 GTTGTTGTGGCATGTCGACC 60.040 55.000 14.12 0.00 0.00 4.79
4989 5566 1.502990 TTGTTGTGGCATGTCGACCG 61.503 55.000 14.12 5.33 0.00 4.79
4990 5567 2.358125 TTGTGGCATGTCGACCGG 60.358 61.111 14.12 0.00 0.00 5.28
4991 5568 3.892740 TTGTGGCATGTCGACCGGG 62.893 63.158 14.12 3.37 0.00 5.73
4994 5571 3.861797 GGCATGTCGACCGGGGAT 61.862 66.667 14.12 0.00 0.00 3.85
4995 5572 2.280186 GCATGTCGACCGGGGATC 60.280 66.667 14.12 0.00 0.00 3.36
4996 5573 3.088941 GCATGTCGACCGGGGATCA 62.089 63.158 14.12 4.62 0.00 2.92
4997 5574 1.748403 CATGTCGACCGGGGATCAT 59.252 57.895 14.12 6.70 0.00 2.45
4998 5575 0.319900 CATGTCGACCGGGGATCATC 60.320 60.000 14.12 0.00 0.00 2.92
4999 5576 1.472662 ATGTCGACCGGGGATCATCC 61.473 60.000 14.12 0.00 35.23 3.51
5000 5577 1.833049 GTCGACCGGGGATCATCCT 60.833 63.158 6.32 0.00 36.57 3.24
5001 5578 1.530891 TCGACCGGGGATCATCCTC 60.531 63.158 6.32 0.00 36.57 3.71
5002 5579 1.832608 CGACCGGGGATCATCCTCA 60.833 63.158 3.86 0.00 36.60 3.86
5003 5580 1.188219 CGACCGGGGATCATCCTCAT 61.188 60.000 3.86 0.00 36.60 2.90
5004 5581 0.322975 GACCGGGGATCATCCTCATG 59.677 60.000 3.86 0.00 36.60 3.07
5005 5582 1.002868 CCGGGGATCATCCTCATGC 60.003 63.158 3.86 0.00 36.60 4.06
5006 5583 1.486997 CCGGGGATCATCCTCATGCT 61.487 60.000 3.86 0.00 36.60 3.79
5007 5584 0.036577 CGGGGATCATCCTCATGCTC 60.037 60.000 3.86 0.00 36.60 4.26
5008 5585 0.327591 GGGGATCATCCTCATGCTCC 59.672 60.000 2.93 0.00 42.52 4.70
5009 5586 1.360185 GGGATCATCCTCATGCTCCT 58.640 55.000 2.93 0.00 42.75 3.69
5010 5587 1.704070 GGGATCATCCTCATGCTCCTT 59.296 52.381 2.93 0.00 42.75 3.36
5011 5588 2.552591 GGGATCATCCTCATGCTCCTTG 60.553 54.545 2.93 0.00 42.75 3.61
5012 5589 2.371179 GGATCATCCTCATGCTCCTTGA 59.629 50.000 0.00 0.00 40.77 3.02
5013 5590 3.181447 GGATCATCCTCATGCTCCTTGAA 60.181 47.826 0.00 0.00 40.77 2.69
5014 5591 4.458397 GATCATCCTCATGCTCCTTGAAA 58.542 43.478 0.00 0.00 0.00 2.69
5015 5592 3.614092 TCATCCTCATGCTCCTTGAAAC 58.386 45.455 0.00 0.00 0.00 2.78
5016 5593 2.496899 TCCTCATGCTCCTTGAAACC 57.503 50.000 0.00 0.00 0.00 3.27
5017 5594 1.988107 TCCTCATGCTCCTTGAAACCT 59.012 47.619 0.00 0.00 0.00 3.50
5018 5595 2.376518 TCCTCATGCTCCTTGAAACCTT 59.623 45.455 0.00 0.00 0.00 3.50
5019 5596 3.160269 CCTCATGCTCCTTGAAACCTTT 58.840 45.455 0.00 0.00 0.00 3.11
5020 5597 4.042809 TCCTCATGCTCCTTGAAACCTTTA 59.957 41.667 0.00 0.00 0.00 1.85
5021 5598 4.952335 CCTCATGCTCCTTGAAACCTTTAT 59.048 41.667 0.00 0.00 0.00 1.40
5022 5599 5.067023 CCTCATGCTCCTTGAAACCTTTATC 59.933 44.000 0.00 0.00 0.00 1.75
5023 5600 5.819991 TCATGCTCCTTGAAACCTTTATCT 58.180 37.500 0.00 0.00 0.00 1.98
5024 5601 6.957631 TCATGCTCCTTGAAACCTTTATCTA 58.042 36.000 0.00 0.00 0.00 1.98
5025 5602 6.823689 TCATGCTCCTTGAAACCTTTATCTAC 59.176 38.462 0.00 0.00 0.00 2.59
5026 5603 5.497474 TGCTCCTTGAAACCTTTATCTACC 58.503 41.667 0.00 0.00 0.00 3.18
5027 5604 5.013704 TGCTCCTTGAAACCTTTATCTACCA 59.986 40.000 0.00 0.00 0.00 3.25
5028 5605 5.354513 GCTCCTTGAAACCTTTATCTACCAC 59.645 44.000 0.00 0.00 0.00 4.16
5029 5606 6.442541 TCCTTGAAACCTTTATCTACCACA 57.557 37.500 0.00 0.00 0.00 4.17
5030 5607 7.027874 TCCTTGAAACCTTTATCTACCACAT 57.972 36.000 0.00 0.00 0.00 3.21
5031 5608 6.884295 TCCTTGAAACCTTTATCTACCACATG 59.116 38.462 0.00 0.00 0.00 3.21
5032 5609 6.659242 CCTTGAAACCTTTATCTACCACATGT 59.341 38.462 0.00 0.00 0.00 3.21
5033 5610 7.148239 CCTTGAAACCTTTATCTACCACATGTC 60.148 40.741 0.00 0.00 0.00 3.06
5034 5611 5.872617 TGAAACCTTTATCTACCACATGTCG 59.127 40.000 0.00 0.00 0.00 4.35
5035 5612 5.416271 AACCTTTATCTACCACATGTCGT 57.584 39.130 0.71 0.71 0.00 4.34
5036 5613 5.007385 ACCTTTATCTACCACATGTCGTC 57.993 43.478 0.00 0.00 0.00 4.20
5037 5614 4.042398 CCTTTATCTACCACATGTCGTCG 58.958 47.826 0.00 0.00 0.00 5.12
5038 5615 4.201980 CCTTTATCTACCACATGTCGTCGA 60.202 45.833 0.00 0.00 0.00 4.20
5039 5616 4.547406 TTATCTACCACATGTCGTCGAG 57.453 45.455 0.00 0.00 0.00 4.04
5040 5617 1.092348 TCTACCACATGTCGTCGAGG 58.908 55.000 0.00 0.00 0.00 4.63
5041 5618 0.525668 CTACCACATGTCGTCGAGGC 60.526 60.000 0.00 0.00 0.00 4.70
5042 5619 1.245376 TACCACATGTCGTCGAGGCA 61.245 55.000 0.00 2.57 39.68 4.75
5043 5620 1.807165 CCACATGTCGTCGAGGCAG 60.807 63.158 0.00 0.35 38.18 4.85
5044 5621 1.212751 CACATGTCGTCGAGGCAGA 59.787 57.895 0.00 0.00 38.18 4.26
5045 5622 0.388520 CACATGTCGTCGAGGCAGAA 60.389 55.000 0.00 0.00 38.18 3.02
5046 5623 0.388649 ACATGTCGTCGAGGCAGAAC 60.389 55.000 0.00 0.00 38.18 3.01
5047 5624 1.154016 ATGTCGTCGAGGCAGAACG 60.154 57.895 0.00 0.00 38.18 3.95
5048 5625 3.173240 GTCGTCGAGGCAGAACGC 61.173 66.667 0.00 0.00 41.28 4.84
5049 5626 3.362797 TCGTCGAGGCAGAACGCT 61.363 61.111 0.00 0.00 41.91 5.07
5050 5627 3.175240 CGTCGAGGCAGAACGCTG 61.175 66.667 0.00 0.00 45.13 5.18
5051 5628 2.811317 GTCGAGGCAGAACGCTGG 60.811 66.667 0.00 0.00 42.53 4.85
5052 5629 2.989253 TCGAGGCAGAACGCTGGA 60.989 61.111 0.00 0.00 42.53 3.86
5053 5630 2.048222 CGAGGCAGAACGCTGGAA 60.048 61.111 0.00 0.00 42.53 3.53
5054 5631 2.383527 CGAGGCAGAACGCTGGAAC 61.384 63.158 0.00 0.00 42.53 3.62
5055 5632 1.004440 GAGGCAGAACGCTGGAACT 60.004 57.895 0.00 0.00 42.53 3.01
5056 5633 1.294659 GAGGCAGAACGCTGGAACTG 61.295 60.000 0.00 0.00 42.53 3.16
5065 5642 2.669569 CTGGAACTGCCACCCACG 60.670 66.667 0.00 0.00 43.33 4.94
5066 5643 3.164977 TGGAACTGCCACCCACGA 61.165 61.111 0.00 0.00 43.33 4.35
5067 5644 2.358737 GGAACTGCCACCCACGAG 60.359 66.667 0.00 0.00 36.34 4.18
5068 5645 3.050275 GAACTGCCACCCACGAGC 61.050 66.667 0.00 0.00 0.00 5.03
5069 5646 4.643387 AACTGCCACCCACGAGCC 62.643 66.667 0.00 0.00 0.00 4.70
5074 5651 4.263572 CCACCCACGAGCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
5075 5652 2.978010 CACCCACGAGCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
5076 5653 4.265056 ACCCACGAGCCACCAACC 62.265 66.667 0.00 0.00 0.00 3.77
5077 5654 3.953775 CCCACGAGCCACCAACCT 61.954 66.667 0.00 0.00 0.00 3.50
5078 5655 2.113139 CCACGAGCCACCAACCTT 59.887 61.111 0.00 0.00 0.00 3.50
5079 5656 1.966451 CCACGAGCCACCAACCTTC 60.966 63.158 0.00 0.00 0.00 3.46
5080 5657 1.071471 CACGAGCCACCAACCTTCT 59.929 57.895 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.736053 TTGTTGAACAAGACACGCCC 59.264 50.000 6.66 0.00 32.34 6.13
169 172 0.332972 ATCTGAACCAAGAAGGGGGC 59.667 55.000 0.00 0.00 43.89 5.80
390 397 7.973388 AGAAAGTCTATGAAGAGATTGAAGTCG 59.027 37.037 0.00 0.00 30.45 4.18
539 562 2.011947 GCTGCTGCACATCATGTTCTA 58.988 47.619 11.11 0.00 39.41 2.10
566 589 1.667236 TGTTTGCAGACTGGACTGTG 58.333 50.000 9.02 0.00 39.73 3.66
631 655 3.895656 ACCAATATAGCTAGGCTGACGAA 59.104 43.478 0.00 0.00 40.10 3.85
634 658 4.752101 CACAACCAATATAGCTAGGCTGAC 59.248 45.833 7.05 0.00 40.10 3.51
670 694 7.041984 ACGTTCATTCTCTTTTCTGTTAAGGAC 60.042 37.037 0.00 0.00 0.00 3.85
729 753 9.102757 CATATTCAGGTATAACACTATCCATGC 57.897 37.037 0.00 0.00 0.00 4.06
752 776 2.694616 GGGGAGGGGGCACACATA 60.695 66.667 0.00 0.00 0.00 2.29
837 866 7.798071 TGTTATCAAGTAATTACTACCCCTGG 58.202 38.462 18.31 3.56 34.99 4.45
861 890 9.803315 ATTCAGATTTCATCTCAAACAATCATG 57.197 29.630 0.00 0.00 37.58 3.07
868 898 9.994432 ACGATTAATTCAGATTTCATCTCAAAC 57.006 29.630 0.00 0.00 37.58 2.93
871 901 9.254133 GAGACGATTAATTCAGATTTCATCTCA 57.746 33.333 0.00 0.00 37.58 3.27
875 905 7.770433 TGTGGAGACGATTAATTCAGATTTCAT 59.230 33.333 0.00 0.00 0.00 2.57
897 927 4.141642 TGACAGTCATCCCAATAGATGTGG 60.142 45.833 0.00 0.00 43.46 4.17
953 985 9.780413 GACCAAAAGTTTCAATAATTTTTGCAA 57.220 25.926 0.00 0.00 37.39 4.08
954 986 8.950210 TGACCAAAAGTTTCAATAATTTTTGCA 58.050 25.926 10.75 0.00 37.39 4.08
967 1000 6.906678 GCAACATTGAAATGACCAAAAGTTTC 59.093 34.615 9.94 0.00 39.67 2.78
984 1017 4.142556 TGTGACATATCTGCTGCAACATTG 60.143 41.667 3.02 2.44 0.00 2.82
1007 1040 8.154649 AGATTCAACAACGTTAATTCTTGTCT 57.845 30.769 0.00 0.00 0.00 3.41
1048 1081 2.074547 TGTTCGATCGGTTCTTCCAC 57.925 50.000 16.41 0.66 35.57 4.02
1092 1125 4.420522 TTCATGGACATCGGATGATTCA 57.579 40.909 23.98 16.99 30.49 2.57
1172 1205 3.058224 AGCAACAAACTTACCATCTTCGC 60.058 43.478 0.00 0.00 0.00 4.70
1262 1295 6.774084 TCTTTTGTTTTTGCATTTTCAGCTC 58.226 32.000 0.00 0.00 0.00 4.09
1372 1405 5.966742 AGATGTTTAGCCTCTTTTCCAAC 57.033 39.130 0.00 0.00 0.00 3.77
1539 1572 5.642063 TGTAAGGCAACATAGAACAAGCTAC 59.358 40.000 0.00 0.00 41.41 3.58
1681 1714 7.541162 TCTCATCAAAATACATTGCTTTCAGG 58.459 34.615 0.00 0.00 0.00 3.86
1712 1746 2.697751 TGTTGTAATTGGCTTTGGTGCT 59.302 40.909 0.00 0.00 0.00 4.40
1718 1752 8.738645 TTTGGTTTATTGTTGTAATTGGCTTT 57.261 26.923 0.00 0.00 0.00 3.51
1891 1925 7.039722 TCCCCTACCAAAGAATAACTCAAAT 57.960 36.000 0.00 0.00 0.00 2.32
1897 1931 6.262496 GCACTAATCCCCTACCAAAGAATAAC 59.738 42.308 0.00 0.00 0.00 1.89
1929 1963 9.565213 GACTTCCTCATTGAACAATTATTTCTG 57.435 33.333 0.00 0.00 0.00 3.02
2015 2049 5.748402 TGGAAGAGTGATGCATGAAGTTAT 58.252 37.500 2.46 0.00 0.00 1.89
2029 2063 8.517878 ACATTAGAAAACATGAATGGAAGAGTG 58.482 33.333 0.00 0.00 34.30 3.51
2030 2064 8.641498 ACATTAGAAAACATGAATGGAAGAGT 57.359 30.769 0.00 0.00 34.30 3.24
2198 2232 4.247267 TCAAATACGAACGGTTGAGAGT 57.753 40.909 0.00 0.00 0.00 3.24
2273 2307 9.136323 GGGTTCTTGTCCATAATATCTTTCAAT 57.864 33.333 0.00 0.00 0.00 2.57
2628 2687 8.915654 GTTAGTCCACAAAATAAATGAAGCTTG 58.084 33.333 2.10 0.00 0.00 4.01
3117 3214 6.728200 CAGAGCATTTTTCTAGTTGTTGTGA 58.272 36.000 0.00 0.00 0.00 3.58
3121 3218 5.766222 CAGCAGAGCATTTTTCTAGTTGTT 58.234 37.500 0.00 0.00 0.00 2.83
3236 3333 3.142174 GGAGTTTCTTGGTTCTGGACAG 58.858 50.000 0.00 0.00 0.00 3.51
3398 3503 5.331902 TCTCAAGCAAAGTTTCTTTGTTCG 58.668 37.500 18.94 7.21 0.00 3.95
3455 3560 6.166279 TGAAAACATACCAGTTTGTTTGCAA 58.834 32.000 19.18 0.00 42.77 4.08
3540 3648 7.112122 TGGACAACAGTATGATAGCAAAGAAT 58.888 34.615 0.00 0.00 39.69 2.40
3636 3801 6.210784 ACTCTTACAGGTAATTCACTAGCACA 59.789 38.462 0.00 0.00 0.00 4.57
3674 3839 7.283329 ACAGAAAGTAAACAGAGGAACATCTT 58.717 34.615 0.00 0.00 0.00 2.40
3691 3856 9.574516 AGTAACCATATGAGAAAAACAGAAAGT 57.425 29.630 3.65 0.00 0.00 2.66
3873 4042 3.502191 TTCAGTTTTCACAAGTGCCAC 57.498 42.857 0.00 0.00 0.00 5.01
3965 4136 7.703621 GCAAGATATTAGTCACGTACAAAGGTA 59.296 37.037 0.00 0.00 0.00 3.08
4017 4188 3.128764 TGAACCGTTAACACACAATGCAA 59.871 39.130 6.39 0.00 0.00 4.08
4034 4205 9.145865 TCTACAAACAAGAAAACAAAATGAACC 57.854 29.630 0.00 0.00 0.00 3.62
4121 4294 5.333875 CGTCACCATCATGAAGCAGAATATG 60.334 44.000 0.00 0.00 0.00 1.78
4380 4763 9.232473 AGTGAAGGAAAAACAAGAGAATATACC 57.768 33.333 0.00 0.00 0.00 2.73
4444 4882 9.638176 ATGATCATCATCATCATCATCATCATT 57.362 29.630 1.18 0.00 45.26 2.57
4799 5376 1.340248 TGTGTCGTCTGTCCTTTCCTC 59.660 52.381 0.00 0.00 0.00 3.71
4800 5377 1.410004 TGTGTCGTCTGTCCTTTCCT 58.590 50.000 0.00 0.00 0.00 3.36
4801 5378 2.069273 CATGTGTCGTCTGTCCTTTCC 58.931 52.381 0.00 0.00 0.00 3.13
4802 5379 2.755650 ACATGTGTCGTCTGTCCTTTC 58.244 47.619 0.00 0.00 0.00 2.62
4803 5380 2.910688 ACATGTGTCGTCTGTCCTTT 57.089 45.000 0.00 0.00 0.00 3.11
4804 5381 2.102420 TGAACATGTGTCGTCTGTCCTT 59.898 45.455 0.00 0.00 0.00 3.36
4805 5382 1.686587 TGAACATGTGTCGTCTGTCCT 59.313 47.619 0.00 0.00 0.00 3.85
4806 5383 2.148916 TGAACATGTGTCGTCTGTCC 57.851 50.000 0.00 0.00 0.00 4.02
4807 5384 4.530094 TTTTGAACATGTGTCGTCTGTC 57.470 40.909 0.00 0.00 0.00 3.51
4808 5385 4.155099 TGTTTTTGAACATGTGTCGTCTGT 59.845 37.500 0.00 0.00 0.00 3.41
4809 5386 4.657055 TGTTTTTGAACATGTGTCGTCTG 58.343 39.130 0.00 0.00 0.00 3.51
4810 5387 4.955925 TGTTTTTGAACATGTGTCGTCT 57.044 36.364 0.00 0.00 0.00 4.18
4811 5388 5.051774 CCAATGTTTTTGAACATGTGTCGTC 60.052 40.000 0.00 0.00 42.13 4.20
4812 5389 4.803088 CCAATGTTTTTGAACATGTGTCGT 59.197 37.500 0.00 0.00 42.13 4.34
4813 5390 4.317980 GCCAATGTTTTTGAACATGTGTCG 60.318 41.667 0.00 0.00 42.13 4.35
4814 5391 4.569966 TGCCAATGTTTTTGAACATGTGTC 59.430 37.500 0.00 0.00 42.13 3.67
4815 5392 4.511527 TGCCAATGTTTTTGAACATGTGT 58.488 34.783 0.00 0.00 42.13 3.72
4816 5393 5.293814 TCTTGCCAATGTTTTTGAACATGTG 59.706 36.000 0.00 6.53 42.13 3.21
4817 5394 5.426504 TCTTGCCAATGTTTTTGAACATGT 58.573 33.333 5.62 0.00 42.13 3.21
4818 5395 5.987777 TCTTGCCAATGTTTTTGAACATG 57.012 34.783 5.62 0.00 42.13 3.21
4819 5396 6.998968 TTTCTTGCCAATGTTTTTGAACAT 57.001 29.167 0.00 0.00 44.63 2.71
4820 5397 6.822676 AGATTTCTTGCCAATGTTTTTGAACA 59.177 30.769 0.00 0.00 37.05 3.18
4821 5398 7.250445 AGATTTCTTGCCAATGTTTTTGAAC 57.750 32.000 0.00 0.00 0.00 3.18
4822 5399 7.551974 TGAAGATTTCTTGCCAATGTTTTTGAA 59.448 29.630 0.00 0.00 36.11 2.69
4823 5400 7.046652 TGAAGATTTCTTGCCAATGTTTTTGA 58.953 30.769 0.00 0.00 36.11 2.69
4824 5401 7.249186 TGAAGATTTCTTGCCAATGTTTTTG 57.751 32.000 0.00 0.00 36.11 2.44
4825 5402 8.347035 CAATGAAGATTTCTTGCCAATGTTTTT 58.653 29.630 0.00 0.00 36.11 1.94
4826 5403 7.716123 TCAATGAAGATTTCTTGCCAATGTTTT 59.284 29.630 0.00 0.00 36.11 2.43
4827 5404 7.218614 TCAATGAAGATTTCTTGCCAATGTTT 58.781 30.769 0.00 0.00 36.11 2.83
4828 5405 6.761312 TCAATGAAGATTTCTTGCCAATGTT 58.239 32.000 0.00 0.00 36.11 2.71
4829 5406 6.349243 TCAATGAAGATTTCTTGCCAATGT 57.651 33.333 0.00 0.00 36.11 2.71
4830 5407 6.872020 ACTTCAATGAAGATTTCTTGCCAATG 59.128 34.615 27.63 0.00 41.71 2.82
4831 5408 6.872020 CACTTCAATGAAGATTTCTTGCCAAT 59.128 34.615 27.63 0.00 41.71 3.16
4832 5409 6.218019 CACTTCAATGAAGATTTCTTGCCAA 58.782 36.000 27.63 0.00 41.71 4.52
4833 5410 5.279106 CCACTTCAATGAAGATTTCTTGCCA 60.279 40.000 27.63 0.00 41.71 4.92
4834 5411 5.047802 TCCACTTCAATGAAGATTTCTTGCC 60.048 40.000 27.63 0.00 41.71 4.52
4835 5412 6.017400 TCCACTTCAATGAAGATTTCTTGC 57.983 37.500 27.63 0.00 41.71 4.01
4836 5413 9.136952 GAAATCCACTTCAATGAAGATTTCTTG 57.863 33.333 27.63 14.47 41.71 3.02
4837 5414 9.086758 AGAAATCCACTTCAATGAAGATTTCTT 57.913 29.630 27.70 19.13 41.93 2.52
4838 5415 8.521176 CAGAAATCCACTTCAATGAAGATTTCT 58.479 33.333 27.70 27.70 43.42 2.52
4839 5416 7.275123 GCAGAAATCCACTTCAATGAAGATTTC 59.725 37.037 27.63 26.33 41.71 2.17
4840 5417 7.095270 GCAGAAATCCACTTCAATGAAGATTT 58.905 34.615 27.63 21.23 41.71 2.17
4841 5418 6.209986 TGCAGAAATCCACTTCAATGAAGATT 59.790 34.615 27.63 14.89 41.71 2.40
4842 5419 5.713389 TGCAGAAATCCACTTCAATGAAGAT 59.287 36.000 27.63 9.85 41.71 2.40
4843 5420 5.072055 TGCAGAAATCCACTTCAATGAAGA 58.928 37.500 27.63 7.88 41.71 2.87
4844 5421 5.381174 TGCAGAAATCCACTTCAATGAAG 57.619 39.130 20.35 20.35 44.37 3.02
4845 5422 5.509501 GGTTGCAGAAATCCACTTCAATGAA 60.510 40.000 0.00 0.00 0.00 2.57
4846 5423 4.022068 GGTTGCAGAAATCCACTTCAATGA 60.022 41.667 0.00 0.00 0.00 2.57
4847 5424 4.240096 GGTTGCAGAAATCCACTTCAATG 58.760 43.478 0.00 0.00 0.00 2.82
4848 5425 3.896888 TGGTTGCAGAAATCCACTTCAAT 59.103 39.130 0.00 0.00 0.00 2.57
4849 5426 3.068024 GTGGTTGCAGAAATCCACTTCAA 59.932 43.478 14.94 0.00 44.57 2.69
4850 5427 2.622942 GTGGTTGCAGAAATCCACTTCA 59.377 45.455 14.94 0.00 44.57 3.02
4851 5428 2.029918 GGTGGTTGCAGAAATCCACTTC 60.030 50.000 18.77 7.05 46.42 3.01
4852 5429 1.963515 GGTGGTTGCAGAAATCCACTT 59.036 47.619 18.77 0.00 46.42 3.16
4853 5430 1.133513 TGGTGGTTGCAGAAATCCACT 60.134 47.619 18.77 0.00 46.42 4.00
4854 5431 1.327303 TGGTGGTTGCAGAAATCCAC 58.673 50.000 14.29 14.29 46.46 4.02
4855 5432 1.894466 CATGGTGGTTGCAGAAATCCA 59.106 47.619 0.00 0.00 0.00 3.41
4856 5433 1.404583 GCATGGTGGTTGCAGAAATCC 60.405 52.381 0.00 0.00 39.90 3.01
4857 5434 1.547372 AGCATGGTGGTTGCAGAAATC 59.453 47.619 0.00 0.00 42.62 2.17
4858 5435 1.547372 GAGCATGGTGGTTGCAGAAAT 59.453 47.619 0.00 0.00 42.62 2.17
4859 5436 0.961019 GAGCATGGTGGTTGCAGAAA 59.039 50.000 0.00 0.00 42.62 2.52
4860 5437 0.178995 TGAGCATGGTGGTTGCAGAA 60.179 50.000 0.00 0.00 42.62 3.02
4861 5438 0.890542 GTGAGCATGGTGGTTGCAGA 60.891 55.000 0.00 0.00 42.62 4.26
4862 5439 1.582968 GTGAGCATGGTGGTTGCAG 59.417 57.895 0.00 0.00 42.62 4.41
4863 5440 1.902918 GGTGAGCATGGTGGTTGCA 60.903 57.895 0.00 0.00 42.62 4.08
4864 5441 1.902918 TGGTGAGCATGGTGGTTGC 60.903 57.895 0.00 0.00 40.45 4.17
4865 5442 0.538057 AGTGGTGAGCATGGTGGTTG 60.538 55.000 0.00 0.00 0.00 3.77
4866 5443 0.185901 AAGTGGTGAGCATGGTGGTT 59.814 50.000 0.00 0.00 0.00 3.67
4867 5444 0.538057 CAAGTGGTGAGCATGGTGGT 60.538 55.000 0.00 0.00 0.00 4.16
4868 5445 1.870055 GCAAGTGGTGAGCATGGTGG 61.870 60.000 0.00 0.00 0.00 4.61
4869 5446 1.582968 GCAAGTGGTGAGCATGGTG 59.417 57.895 0.00 0.00 0.00 4.17
4870 5447 1.604593 GGCAAGTGGTGAGCATGGT 60.605 57.895 0.00 0.00 0.00 3.55
4871 5448 0.968901 ATGGCAAGTGGTGAGCATGG 60.969 55.000 0.00 0.00 0.00 3.66
4872 5449 0.454600 GATGGCAAGTGGTGAGCATG 59.545 55.000 0.00 0.00 0.00 4.06
4873 5450 0.330604 AGATGGCAAGTGGTGAGCAT 59.669 50.000 0.00 0.00 0.00 3.79
4874 5451 0.111061 AAGATGGCAAGTGGTGAGCA 59.889 50.000 0.00 0.00 0.00 4.26
4875 5452 0.807496 GAAGATGGCAAGTGGTGAGC 59.193 55.000 0.00 0.00 0.00 4.26
4876 5453 1.081892 CGAAGATGGCAAGTGGTGAG 58.918 55.000 0.00 0.00 0.00 3.51
4877 5454 0.321564 CCGAAGATGGCAAGTGGTGA 60.322 55.000 0.00 0.00 0.00 4.02
4878 5455 0.321564 TCCGAAGATGGCAAGTGGTG 60.322 55.000 0.00 0.00 0.00 4.17
4879 5456 0.321653 GTCCGAAGATGGCAAGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
4880 5457 0.321564 TGTCCGAAGATGGCAAGTGG 60.322 55.000 0.00 0.00 0.00 4.00
4881 5458 0.798776 GTGTCCGAAGATGGCAAGTG 59.201 55.000 0.00 0.00 0.00 3.16
4882 5459 0.670546 CGTGTCCGAAGATGGCAAGT 60.671 55.000 0.00 0.00 35.63 3.16
4883 5460 0.389817 TCGTGTCCGAAGATGGCAAG 60.390 55.000 0.00 0.00 40.86 4.01
4884 5461 1.668867 TCGTGTCCGAAGATGGCAA 59.331 52.632 0.00 0.00 40.86 4.52
4885 5462 3.372123 TCGTGTCCGAAGATGGCA 58.628 55.556 0.00 0.00 40.86 4.92
4893 5470 1.034356 TGGTTCTTCTTCGTGTCCGA 58.966 50.000 0.00 0.00 42.41 4.55
4894 5471 1.993370 GATGGTTCTTCTTCGTGTCCG 59.007 52.381 0.00 0.00 0.00 4.79
4895 5472 1.993370 CGATGGTTCTTCTTCGTGTCC 59.007 52.381 0.00 0.00 32.14 4.02
4896 5473 1.390463 GCGATGGTTCTTCTTCGTGTC 59.610 52.381 0.00 0.00 36.89 3.67
4897 5474 1.429463 GCGATGGTTCTTCTTCGTGT 58.571 50.000 0.00 0.00 36.89 4.49
4898 5475 0.721718 GGCGATGGTTCTTCTTCGTG 59.278 55.000 0.00 0.00 36.89 4.35
4899 5476 0.391263 GGGCGATGGTTCTTCTTCGT 60.391 55.000 0.00 0.00 36.89 3.85
4900 5477 0.108138 AGGGCGATGGTTCTTCTTCG 60.108 55.000 0.00 0.00 37.37 3.79
4901 5478 2.981859 TAGGGCGATGGTTCTTCTTC 57.018 50.000 0.00 0.00 0.00 2.87
4902 5479 2.771943 TCATAGGGCGATGGTTCTTCTT 59.228 45.455 0.00 0.00 0.00 2.52
4903 5480 2.366916 CTCATAGGGCGATGGTTCTTCT 59.633 50.000 0.00 0.00 0.00 2.85
4904 5481 2.548920 CCTCATAGGGCGATGGTTCTTC 60.549 54.545 0.00 0.00 0.00 2.87
4905 5482 1.417890 CCTCATAGGGCGATGGTTCTT 59.582 52.381 0.00 0.00 0.00 2.52
4906 5483 1.051812 CCTCATAGGGCGATGGTTCT 58.948 55.000 0.00 0.00 0.00 3.01
4907 5484 0.759346 ACCTCATAGGGCGATGGTTC 59.241 55.000 0.00 0.00 40.58 3.62
4908 5485 0.759346 GACCTCATAGGGCGATGGTT 59.241 55.000 0.00 0.00 40.58 3.67
4909 5486 2.442056 GACCTCATAGGGCGATGGT 58.558 57.895 0.00 0.00 40.58 3.55
4915 5492 2.911484 CTCACAAAGACCTCATAGGGC 58.089 52.381 0.00 0.00 46.64 5.19
4916 5493 2.420687 GGCTCACAAAGACCTCATAGGG 60.421 54.545 0.00 0.00 40.58 3.53
4917 5494 2.503356 AGGCTCACAAAGACCTCATAGG 59.497 50.000 0.00 0.00 42.49 2.57
4918 5495 3.902881 AGGCTCACAAAGACCTCATAG 57.097 47.619 0.00 0.00 30.70 2.23
4919 5496 5.023452 TCTTAGGCTCACAAAGACCTCATA 58.977 41.667 0.00 0.00 34.56 2.15
4920 5497 3.840666 TCTTAGGCTCACAAAGACCTCAT 59.159 43.478 0.00 0.00 34.56 2.90
4921 5498 3.239449 TCTTAGGCTCACAAAGACCTCA 58.761 45.455 0.00 0.00 34.56 3.86
4922 5499 3.963428 TCTTAGGCTCACAAAGACCTC 57.037 47.619 0.00 0.00 34.56 3.85
4923 5500 3.904339 TCTTCTTAGGCTCACAAAGACCT 59.096 43.478 0.00 0.00 36.11 3.85
4924 5501 4.249661 CTCTTCTTAGGCTCACAAAGACC 58.750 47.826 0.00 0.00 30.70 3.85
4925 5502 4.249661 CCTCTTCTTAGGCTCACAAAGAC 58.750 47.826 0.00 0.00 0.00 3.01
4926 5503 4.543590 CCTCTTCTTAGGCTCACAAAGA 57.456 45.455 0.00 0.00 0.00 2.52
4936 5513 1.673168 GTGGCATGCCTCTTCTTAGG 58.327 55.000 35.53 0.00 39.87 2.69
4937 5514 1.673168 GGTGGCATGCCTCTTCTTAG 58.327 55.000 35.53 0.00 36.94 2.18
4938 5515 0.255890 GGGTGGCATGCCTCTTCTTA 59.744 55.000 35.53 12.62 36.94 2.10
4939 5516 1.000396 GGGTGGCATGCCTCTTCTT 60.000 57.895 35.53 0.00 36.94 2.52
4940 5517 2.679716 GGGTGGCATGCCTCTTCT 59.320 61.111 35.53 0.00 36.94 2.85
4941 5518 2.825836 CGGGTGGCATGCCTCTTC 60.826 66.667 35.53 24.58 36.94 2.87
4952 5529 3.762247 CAAGGGCATTGCGGGTGG 61.762 66.667 0.00 0.00 30.65 4.61
4953 5530 2.573083 AACAAGGGCATTGCGGGTG 61.573 57.895 12.40 2.79 43.15 4.61
4954 5531 2.203625 AACAAGGGCATTGCGGGT 60.204 55.556 12.40 0.00 43.15 5.28
4955 5532 2.098426 AACAACAAGGGCATTGCGGG 62.098 55.000 12.40 4.21 43.15 6.13
4956 5533 0.945265 CAACAACAAGGGCATTGCGG 60.945 55.000 12.40 6.81 43.15 5.69
4957 5534 0.249405 ACAACAACAAGGGCATTGCG 60.249 50.000 12.40 6.08 43.15 4.85
4958 5535 1.219646 CACAACAACAAGGGCATTGC 58.780 50.000 12.40 0.00 43.15 3.56
4959 5536 1.868469 CCACAACAACAAGGGCATTG 58.132 50.000 10.78 10.78 45.01 2.82
4960 5537 0.106521 GCCACAACAACAAGGGCATT 59.893 50.000 0.00 0.00 44.01 3.56
4961 5538 1.747774 GCCACAACAACAAGGGCAT 59.252 52.632 0.00 0.00 44.01 4.40
4962 5539 3.215245 GCCACAACAACAAGGGCA 58.785 55.556 0.00 0.00 44.01 5.36
4963 5540 0.600782 CATGCCACAACAACAAGGGC 60.601 55.000 0.00 0.00 44.82 5.19
4964 5541 0.752054 ACATGCCACAACAACAAGGG 59.248 50.000 0.00 0.00 0.00 3.95
4965 5542 1.600164 CGACATGCCACAACAACAAGG 60.600 52.381 0.00 0.00 0.00 3.61
4966 5543 1.333308 TCGACATGCCACAACAACAAG 59.667 47.619 0.00 0.00 0.00 3.16
4967 5544 1.064803 GTCGACATGCCACAACAACAA 59.935 47.619 11.55 0.00 0.00 2.83
4968 5545 0.660488 GTCGACATGCCACAACAACA 59.340 50.000 11.55 0.00 0.00 3.33
4969 5546 0.040425 GGTCGACATGCCACAACAAC 60.040 55.000 18.91 0.00 0.00 3.32
4970 5547 1.502990 CGGTCGACATGCCACAACAA 61.503 55.000 18.91 0.00 0.00 2.83
4971 5548 1.958715 CGGTCGACATGCCACAACA 60.959 57.895 18.91 0.00 0.00 3.33
4972 5549 2.677003 CCGGTCGACATGCCACAAC 61.677 63.158 18.91 0.00 0.00 3.32
4973 5550 2.358125 CCGGTCGACATGCCACAA 60.358 61.111 18.91 0.00 0.00 3.33
4974 5551 4.386951 CCCGGTCGACATGCCACA 62.387 66.667 18.91 0.00 0.00 4.17
4977 5554 3.809374 GATCCCCGGTCGACATGCC 62.809 68.421 18.91 0.00 0.00 4.40
4978 5555 2.280186 GATCCCCGGTCGACATGC 60.280 66.667 18.91 0.00 0.00 4.06
4979 5556 0.319900 GATGATCCCCGGTCGACATG 60.320 60.000 18.91 9.02 0.00 3.21
4980 5557 1.472662 GGATGATCCCCGGTCGACAT 61.473 60.000 18.91 0.80 0.00 3.06
4981 5558 2.131709 GGATGATCCCCGGTCGACA 61.132 63.158 18.91 0.00 0.00 4.35
4982 5559 1.807495 GAGGATGATCCCCGGTCGAC 61.807 65.000 8.08 7.13 37.19 4.20
4983 5560 1.530891 GAGGATGATCCCCGGTCGA 60.531 63.158 8.08 0.00 37.19 4.20
4984 5561 1.188219 ATGAGGATGATCCCCGGTCG 61.188 60.000 8.08 0.00 37.19 4.79
4985 5562 0.322975 CATGAGGATGATCCCCGGTC 59.677 60.000 8.08 0.00 37.19 4.79
4986 5563 1.772819 GCATGAGGATGATCCCCGGT 61.773 60.000 8.08 0.00 37.19 5.28
4987 5564 1.002868 GCATGAGGATGATCCCCGG 60.003 63.158 8.08 0.00 37.19 5.73
4988 5565 0.036577 GAGCATGAGGATGATCCCCG 60.037 60.000 8.08 0.00 37.19 5.73
4989 5566 0.327591 GGAGCATGAGGATGATCCCC 59.672 60.000 8.08 0.00 37.19 4.81
4990 5567 1.360185 AGGAGCATGAGGATGATCCC 58.640 55.000 14.23 0.24 37.19 3.85
4991 5568 2.371179 TCAAGGAGCATGAGGATGATCC 59.629 50.000 10.69 10.69 36.58 3.36
4992 5569 3.766068 TCAAGGAGCATGAGGATGATC 57.234 47.619 0.00 0.00 0.00 2.92
4993 5570 4.205587 GTTTCAAGGAGCATGAGGATGAT 58.794 43.478 0.00 0.00 0.00 2.45
4994 5571 3.614092 GTTTCAAGGAGCATGAGGATGA 58.386 45.455 0.00 0.00 0.00 2.92
4995 5572 2.686915 GGTTTCAAGGAGCATGAGGATG 59.313 50.000 0.00 0.00 0.00 3.51
4996 5573 2.579860 AGGTTTCAAGGAGCATGAGGAT 59.420 45.455 0.00 0.00 0.00 3.24
4997 5574 1.988107 AGGTTTCAAGGAGCATGAGGA 59.012 47.619 0.00 0.00 0.00 3.71
4998 5575 2.503895 AGGTTTCAAGGAGCATGAGG 57.496 50.000 0.00 0.00 0.00 3.86
4999 5576 5.884792 AGATAAAGGTTTCAAGGAGCATGAG 59.115 40.000 0.00 0.00 0.00 2.90
5000 5577 5.819991 AGATAAAGGTTTCAAGGAGCATGA 58.180 37.500 0.00 0.00 0.00 3.07
5001 5578 6.038714 GGTAGATAAAGGTTTCAAGGAGCATG 59.961 42.308 0.00 0.00 0.00 4.06
5002 5579 6.122964 GGTAGATAAAGGTTTCAAGGAGCAT 58.877 40.000 0.00 0.00 0.00 3.79
5003 5580 5.013704 TGGTAGATAAAGGTTTCAAGGAGCA 59.986 40.000 0.00 0.00 0.00 4.26
5004 5581 5.354513 GTGGTAGATAAAGGTTTCAAGGAGC 59.645 44.000 0.00 0.00 0.00 4.70
5005 5582 6.472887 TGTGGTAGATAAAGGTTTCAAGGAG 58.527 40.000 0.00 0.00 0.00 3.69
5006 5583 6.442541 TGTGGTAGATAAAGGTTTCAAGGA 57.557 37.500 0.00 0.00 0.00 3.36
5007 5584 6.659242 ACATGTGGTAGATAAAGGTTTCAAGG 59.341 38.462 0.00 0.00 0.00 3.61
5008 5585 7.413000 CGACATGTGGTAGATAAAGGTTTCAAG 60.413 40.741 1.15 0.00 0.00 3.02
5009 5586 6.370442 CGACATGTGGTAGATAAAGGTTTCAA 59.630 38.462 1.15 0.00 0.00 2.69
5010 5587 5.872617 CGACATGTGGTAGATAAAGGTTTCA 59.127 40.000 1.15 0.00 0.00 2.69
5011 5588 5.873164 ACGACATGTGGTAGATAAAGGTTTC 59.127 40.000 12.23 0.00 0.00 2.78
5012 5589 5.801380 ACGACATGTGGTAGATAAAGGTTT 58.199 37.500 12.23 0.00 0.00 3.27
5013 5590 5.416271 ACGACATGTGGTAGATAAAGGTT 57.584 39.130 12.23 0.00 0.00 3.50
5014 5591 4.439700 CGACGACATGTGGTAGATAAAGGT 60.440 45.833 13.91 0.00 0.00 3.50
5015 5592 4.042398 CGACGACATGTGGTAGATAAAGG 58.958 47.826 13.91 0.00 0.00 3.11
5016 5593 4.916870 TCGACGACATGTGGTAGATAAAG 58.083 43.478 17.46 3.71 0.00 1.85
5017 5594 4.201980 CCTCGACGACATGTGGTAGATAAA 60.202 45.833 20.62 2.93 0.00 1.40
5018 5595 3.314357 CCTCGACGACATGTGGTAGATAA 59.686 47.826 20.62 3.24 0.00 1.75
5019 5596 2.876550 CCTCGACGACATGTGGTAGATA 59.123 50.000 20.62 3.86 0.00 1.98
5020 5597 1.676529 CCTCGACGACATGTGGTAGAT 59.323 52.381 20.62 0.00 0.00 1.98
5021 5598 1.092348 CCTCGACGACATGTGGTAGA 58.908 55.000 19.53 19.53 0.00 2.59
5022 5599 0.525668 GCCTCGACGACATGTGGTAG 60.526 60.000 13.91 13.75 0.00 3.18
5023 5600 1.245376 TGCCTCGACGACATGTGGTA 61.245 55.000 13.91 0.00 0.00 3.25
5024 5601 2.261671 GCCTCGACGACATGTGGT 59.738 61.111 13.82 13.82 0.00 4.16
5025 5602 1.807165 CTGCCTCGACGACATGTGG 60.807 63.158 1.15 4.15 0.00 4.17
5026 5603 0.388520 TTCTGCCTCGACGACATGTG 60.389 55.000 1.15 0.00 0.00 3.21
5027 5604 0.388649 GTTCTGCCTCGACGACATGT 60.389 55.000 0.00 0.00 0.00 3.21
5028 5605 1.406219 CGTTCTGCCTCGACGACATG 61.406 60.000 0.00 0.00 38.99 3.21
5029 5606 1.154016 CGTTCTGCCTCGACGACAT 60.154 57.895 0.00 0.00 38.99 3.06
5030 5607 2.254350 CGTTCTGCCTCGACGACA 59.746 61.111 0.00 0.00 38.99 4.35
5031 5608 3.173240 GCGTTCTGCCTCGACGAC 61.173 66.667 0.00 0.00 38.99 4.34
5040 5617 2.558313 GCAGTTCCAGCGTTCTGC 59.442 61.111 0.00 0.00 44.50 4.26
5041 5618 1.597854 TGGCAGTTCCAGCGTTCTG 60.598 57.895 0.00 0.00 40.72 3.02
5042 5619 2.828868 TGGCAGTTCCAGCGTTCT 59.171 55.556 0.00 0.00 40.72 3.01
5049 5626 3.164977 TCGTGGGTGGCAGTTCCA 61.165 61.111 0.00 0.00 44.18 3.53
5050 5627 2.358737 CTCGTGGGTGGCAGTTCC 60.359 66.667 0.00 0.00 0.00 3.62
5051 5628 3.050275 GCTCGTGGGTGGCAGTTC 61.050 66.667 0.00 0.00 0.00 3.01
5052 5629 4.643387 GGCTCGTGGGTGGCAGTT 62.643 66.667 0.00 0.00 32.96 3.16
5057 5634 4.263572 TTGGTGGCTCGTGGGTGG 62.264 66.667 0.00 0.00 0.00 4.61
5058 5635 2.978010 GTTGGTGGCTCGTGGGTG 60.978 66.667 0.00 0.00 0.00 4.61
5059 5636 4.265056 GGTTGGTGGCTCGTGGGT 62.265 66.667 0.00 0.00 0.00 4.51
5060 5637 3.491598 AAGGTTGGTGGCTCGTGGG 62.492 63.158 0.00 0.00 0.00 4.61
5061 5638 1.966451 GAAGGTTGGTGGCTCGTGG 60.966 63.158 0.00 0.00 0.00 4.94
5062 5639 1.071471 AGAAGGTTGGTGGCTCGTG 59.929 57.895 0.00 0.00 0.00 4.35
5063 5640 3.563512 AGAAGGTTGGTGGCTCGT 58.436 55.556 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.