Multiple sequence alignment - TraesCS3B01G399700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G399700 chr3B 100.000 2408 0 0 1 2408 630900036 630902443 0.000000e+00 4447
1 TraesCS3B01G399700 chr3B 97.674 344 8 0 2065 2408 359214276 359214619 2.060000e-165 592
2 TraesCS3B01G399700 chr3B 95.029 342 17 0 2066 2407 496892498 496892157 2.720000e-149 538
3 TraesCS3B01G399700 chr3D 91.091 1347 68 25 631 1952 474548625 474547306 0.000000e+00 1775
4 TraesCS3B01G399700 chr3D 94.795 634 15 7 1 624 474549307 474548682 0.000000e+00 972
5 TraesCS3B01G399700 chr3A 88.889 1476 86 32 628 2061 616966976 616968415 0.000000e+00 1746
6 TraesCS3B01G399700 chr3A 91.862 639 24 16 1 624 616966293 616966918 0.000000e+00 867
7 TraesCS3B01G399700 chr4B 98.246 342 6 0 2067 2408 327537958 327537617 1.230000e-167 599
8 TraesCS3B01G399700 chr4B 96.830 347 10 1 2062 2407 88910273 88910619 1.600000e-161 579
9 TraesCS3B01G399700 chr5B 97.076 342 10 0 2067 2408 446566120 446565779 5.770000e-161 577
10 TraesCS3B01G399700 chr5B 95.322 342 16 0 2067 2408 153494495 153494836 5.850000e-151 544
11 TraesCS3B01G399700 chr6A 96.793 343 11 0 2066 2408 182498100 182498442 7.470000e-160 573
12 TraesCS3B01G399700 chr7B 96.199 342 13 0 2067 2408 524910659 524911000 5.810000e-156 560
13 TraesCS3B01G399700 chr7B 95.588 340 14 1 2069 2408 506030250 506029912 5.850000e-151 544


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G399700 chr3B 630900036 630902443 2407 False 4447.0 4447 100.0000 1 2408 1 chr3B.!!$F2 2407
1 TraesCS3B01G399700 chr3D 474547306 474549307 2001 True 1373.5 1775 92.9430 1 1952 2 chr3D.!!$R1 1951
2 TraesCS3B01G399700 chr3A 616966293 616968415 2122 False 1306.5 1746 90.3755 1 2061 2 chr3A.!!$F1 2060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.163146 CGTTTCCCGAGAGAAAACGC 59.837 55.0 6.66 0.0 37.49 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 1960 0.741574 TTTGCGCTATGGGTGGTACG 60.742 55.0 9.73 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 0.163146 CGTTTCCCGAGAGAAAACGC 59.837 55.000 6.66 0.00 37.49 4.84
176 177 1.796151 CGACTGCGCAATGATTGGT 59.204 52.632 13.05 3.16 0.00 3.67
326 340 1.312371 CGCCCCGTCAATTCCATGTT 61.312 55.000 0.00 0.00 0.00 2.71
639 712 1.665916 CCATCGCTAGGCGGTCATG 60.666 63.158 11.90 8.26 44.10 3.07
640 713 1.068083 CATCGCTAGGCGGTCATGT 59.932 57.895 11.90 0.00 44.10 3.21
681 759 2.860735 GTGATGCGTACACCTCTTCATC 59.139 50.000 0.00 0.00 32.84 2.92
682 760 2.495669 TGATGCGTACACCTCTTCATCA 59.504 45.455 0.00 0.00 38.25 3.07
683 761 3.132824 TGATGCGTACACCTCTTCATCAT 59.867 43.478 0.00 0.00 36.42 2.45
684 762 3.165058 TGCGTACACCTCTTCATCATC 57.835 47.619 0.00 0.00 0.00 2.92
832 920 3.927142 GTCACATACTCTTGCAGTACCAC 59.073 47.826 0.00 0.00 40.60 4.16
859 947 1.336609 GCTTTTCCTTTGAGCAGGCTG 60.337 52.381 10.94 10.94 36.45 4.85
981 1082 0.750911 GCAAGCAAGCTAGGCATCCT 60.751 55.000 12.27 0.00 37.71 3.24
986 1087 1.478288 GCAAGCTAGGCATCCTTCCAT 60.478 52.381 5.48 0.00 34.61 3.41
1077 1178 2.978452 CTATGTTCTCCCGGCAGGCG 62.978 65.000 9.96 9.96 35.76 5.52
1236 1349 4.035102 GCCCCGAGCAGGAAAGGT 62.035 66.667 0.00 0.00 45.00 3.50
1404 1517 1.807886 CTCGTCCAGGAAGTACCGG 59.192 63.158 0.00 0.00 44.74 5.28
1413 1531 3.999001 CCAGGAAGTACCGGTAGTTTTTC 59.001 47.826 30.50 22.61 44.74 2.29
1423 1541 6.105397 ACCGGTAGTTTTTCTGTGATTCTA 57.895 37.500 4.49 0.00 0.00 2.10
1427 1545 9.158233 CCGGTAGTTTTTCTGTGATTCTATTTA 57.842 33.333 0.00 0.00 0.00 1.40
1428 1546 9.968743 CGGTAGTTTTTCTGTGATTCTATTTAC 57.031 33.333 0.00 0.00 0.00 2.01
1557 1676 0.249868 CGGCCGGATGCATCTTTCTA 60.250 55.000 25.28 0.00 43.89 2.10
1582 1701 2.008329 CTTCTGTGCTCTGGAATCTGC 58.992 52.381 0.00 0.00 0.00 4.26
1670 1791 4.985538 AGCTAATTTCTGGTGTTCTCCAA 58.014 39.130 0.00 0.00 37.01 3.53
1671 1792 4.762251 AGCTAATTTCTGGTGTTCTCCAAC 59.238 41.667 0.00 0.00 37.01 3.77
1673 1794 5.241728 GCTAATTTCTGGTGTTCTCCAACTT 59.758 40.000 0.00 0.00 37.01 2.66
1674 1795 5.774498 AATTTCTGGTGTTCTCCAACTTC 57.226 39.130 0.00 0.00 37.01 3.01
1675 1796 3.924114 TTCTGGTGTTCTCCAACTTCA 57.076 42.857 0.00 0.00 37.01 3.02
1676 1797 3.475566 TCTGGTGTTCTCCAACTTCAG 57.524 47.619 0.00 0.00 37.01 3.02
1679 1800 4.103153 TCTGGTGTTCTCCAACTTCAGATT 59.897 41.667 0.00 0.00 37.35 2.40
1680 1801 4.792068 TGGTGTTCTCCAACTTCAGATTT 58.208 39.130 0.00 0.00 34.24 2.17
1681 1802 5.200483 TGGTGTTCTCCAACTTCAGATTTT 58.800 37.500 0.00 0.00 34.24 1.82
1682 1803 5.067674 TGGTGTTCTCCAACTTCAGATTTTG 59.932 40.000 0.00 0.00 34.24 2.44
1684 1805 6.202226 GTGTTCTCCAACTTCAGATTTTGTC 58.798 40.000 0.00 0.00 33.17 3.18
1685 1806 6.038714 GTGTTCTCCAACTTCAGATTTTGTCT 59.961 38.462 0.00 0.00 33.52 3.41
1688 1809 6.122277 TCTCCAACTTCAGATTTTGTCTTGT 58.878 36.000 0.00 0.00 34.00 3.16
1689 1810 6.603201 TCTCCAACTTCAGATTTTGTCTTGTT 59.397 34.615 0.00 0.00 34.00 2.83
1690 1811 7.773224 TCTCCAACTTCAGATTTTGTCTTGTTA 59.227 33.333 0.00 0.00 34.00 2.41
1691 1812 8.287439 TCCAACTTCAGATTTTGTCTTGTTAA 57.713 30.769 0.00 0.00 34.00 2.01
1693 1814 9.533253 CCAACTTCAGATTTTGTCTTGTTAATT 57.467 29.630 0.00 0.00 34.00 1.40
1704 1825 6.984740 TGTCTTGTTAATTTTGAATGTCGC 57.015 33.333 0.00 0.00 0.00 5.19
1705 1826 6.499172 TGTCTTGTTAATTTTGAATGTCGCA 58.501 32.000 0.00 0.00 0.00 5.10
1706 1827 6.975197 TGTCTTGTTAATTTTGAATGTCGCAA 59.025 30.769 0.00 0.00 0.00 4.85
1707 1828 7.651304 TGTCTTGTTAATTTTGAATGTCGCAAT 59.349 29.630 0.00 0.00 0.00 3.56
1708 1829 9.123709 GTCTTGTTAATTTTGAATGTCGCAATA 57.876 29.630 0.00 0.00 0.00 1.90
1789 1910 5.552870 ACGCCTTGATCCAATAGAGTTAT 57.447 39.130 0.00 0.00 0.00 1.89
1874 1996 2.158058 CGCAAACAAAATCATGGCAAGG 59.842 45.455 0.00 0.00 0.00 3.61
1891 2013 2.338577 AGGCACATCATAGAGCAACC 57.661 50.000 0.00 0.00 0.00 3.77
1902 2024 4.284490 TCATAGAGCAACCAGATCATACCC 59.716 45.833 0.00 0.00 34.30 3.69
1903 2025 1.771255 AGAGCAACCAGATCATACCCC 59.229 52.381 0.00 0.00 34.30 4.95
1904 2026 1.771255 GAGCAACCAGATCATACCCCT 59.229 52.381 0.00 0.00 31.47 4.79
1906 2028 1.490490 GCAACCAGATCATACCCCTGA 59.510 52.381 0.00 0.00 0.00 3.86
1913 2044 4.103785 CCAGATCATACCCCTGAGAAACAT 59.896 45.833 0.00 0.00 0.00 2.71
1917 2048 3.010027 TCATACCCCTGAGAAACATTGCA 59.990 43.478 0.00 0.00 0.00 4.08
1952 2083 7.904094 TCATAAATGTGTGCTGAAAAACAAAC 58.096 30.769 0.00 0.00 0.00 2.93
1960 2091 7.007117 GTGTGCTGAAAAACAAACAAACTAAC 58.993 34.615 0.00 0.00 30.50 2.34
1965 2096 5.059465 TGAAAAACAAACAAACTAACGCGAC 59.941 36.000 15.93 0.00 0.00 5.19
1975 2106 5.349270 ACAAACTAACGCGACAGCAAATATA 59.651 36.000 15.93 0.00 45.49 0.86
1977 2108 6.598753 AACTAACGCGACAGCAAATATATT 57.401 33.333 15.93 0.00 45.49 1.28
1980 2111 4.875544 ACGCGACAGCAAATATATTTGT 57.124 36.364 29.73 17.33 46.63 2.83
1981 2112 5.977171 ACGCGACAGCAAATATATTTGTA 57.023 34.783 29.73 0.00 46.63 2.41
1982 2113 5.734311 ACGCGACAGCAAATATATTTGTAC 58.266 37.500 29.73 18.80 46.63 2.90
2036 2170 8.910666 CAATAAAACATATGAAGCACGTGAAAA 58.089 29.630 22.23 0.91 0.00 2.29
2039 2173 7.945033 AAACATATGAAGCACGTGAAAAATT 57.055 28.000 22.23 4.90 0.00 1.82
2040 2174 6.932901 ACATATGAAGCACGTGAAAAATTG 57.067 33.333 22.23 10.13 0.00 2.32
2041 2175 5.345741 ACATATGAAGCACGTGAAAAATTGC 59.654 36.000 22.23 0.00 35.08 3.56
2048 2182 5.229423 AGCACGTGAAAAATTGCAATGTAT 58.771 33.333 22.23 1.49 37.44 2.29
2064 2198 9.897744 TTGCAATGTATAACAAGAGAAAAGAAG 57.102 29.630 0.00 0.00 0.00 2.85
2065 2199 9.066892 TGCAATGTATAACAAGAGAAAAGAAGT 57.933 29.630 0.00 0.00 0.00 3.01
2066 2200 9.899226 GCAATGTATAACAAGAGAAAAGAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
2111 2245 8.726870 AAGGATTTGCCATTTCATTGATTAAG 57.273 30.769 0.00 0.00 40.02 1.85
2112 2246 8.081517 AGGATTTGCCATTTCATTGATTAAGA 57.918 30.769 0.00 0.00 40.02 2.10
2113 2247 8.542080 AGGATTTGCCATTTCATTGATTAAGAA 58.458 29.630 0.00 0.00 40.02 2.52
2114 2248 8.823818 GGATTTGCCATTTCATTGATTAAGAAG 58.176 33.333 0.00 0.00 36.34 2.85
2115 2249 9.590451 GATTTGCCATTTCATTGATTAAGAAGA 57.410 29.630 0.00 0.00 0.00 2.87
2116 2250 9.947433 ATTTGCCATTTCATTGATTAAGAAGAA 57.053 25.926 0.00 0.00 0.00 2.52
2117 2251 8.991243 TTGCCATTTCATTGATTAAGAAGAAG 57.009 30.769 0.00 0.00 0.00 2.85
2118 2252 7.549839 TGCCATTTCATTGATTAAGAAGAAGG 58.450 34.615 0.00 0.00 0.00 3.46
2119 2253 7.178983 TGCCATTTCATTGATTAAGAAGAAGGT 59.821 33.333 0.00 0.00 0.00 3.50
2120 2254 8.037166 GCCATTTCATTGATTAAGAAGAAGGTT 58.963 33.333 0.00 0.00 0.00 3.50
2121 2255 9.933723 CCATTTCATTGATTAAGAAGAAGGTTT 57.066 29.630 0.00 0.00 0.00 3.27
2128 2262 8.848474 TTGATTAAGAAGAAGGTTTAGACAGG 57.152 34.615 0.00 0.00 0.00 4.00
2129 2263 6.879458 TGATTAAGAAGAAGGTTTAGACAGGC 59.121 38.462 0.00 0.00 0.00 4.85
2130 2264 3.704800 AGAAGAAGGTTTAGACAGGCC 57.295 47.619 0.00 0.00 0.00 5.19
2131 2265 2.979678 AGAAGAAGGTTTAGACAGGCCA 59.020 45.455 5.01 0.00 0.00 5.36
2132 2266 2.861147 AGAAGGTTTAGACAGGCCAC 57.139 50.000 5.01 0.00 0.00 5.01
2133 2267 1.002087 AGAAGGTTTAGACAGGCCACG 59.998 52.381 5.01 0.00 0.00 4.94
2134 2268 1.001633 GAAGGTTTAGACAGGCCACGA 59.998 52.381 5.01 0.00 0.00 4.35
2135 2269 1.053424 AGGTTTAGACAGGCCACGAA 58.947 50.000 5.01 0.00 0.00 3.85
2136 2270 1.002087 AGGTTTAGACAGGCCACGAAG 59.998 52.381 5.01 0.00 0.00 3.79
2154 2288 6.575162 ACGAAGTGGCAAGAAATAAAATCT 57.425 33.333 0.00 0.00 42.51 2.40
2155 2289 7.681939 ACGAAGTGGCAAGAAATAAAATCTA 57.318 32.000 0.00 0.00 42.51 1.98
2156 2290 7.527457 ACGAAGTGGCAAGAAATAAAATCTAC 58.473 34.615 0.00 0.00 42.51 2.59
2157 2291 7.390718 ACGAAGTGGCAAGAAATAAAATCTACT 59.609 33.333 0.00 0.00 42.51 2.57
2158 2292 7.905493 CGAAGTGGCAAGAAATAAAATCTACTC 59.095 37.037 0.00 0.00 0.00 2.59
2159 2293 8.870075 AAGTGGCAAGAAATAAAATCTACTCT 57.130 30.769 0.00 0.00 0.00 3.24
2160 2294 8.499403 AGTGGCAAGAAATAAAATCTACTCTC 57.501 34.615 0.00 0.00 0.00 3.20
2161 2295 7.278868 AGTGGCAAGAAATAAAATCTACTCTCG 59.721 37.037 0.00 0.00 0.00 4.04
2162 2296 6.037172 TGGCAAGAAATAAAATCTACTCTCGC 59.963 38.462 0.00 0.00 0.00 5.03
2163 2297 6.123441 GCAAGAAATAAAATCTACTCTCGCG 58.877 40.000 0.00 0.00 0.00 5.87
2164 2298 6.641062 CAAGAAATAAAATCTACTCTCGCGG 58.359 40.000 6.13 0.00 0.00 6.46
2165 2299 4.745620 AGAAATAAAATCTACTCTCGCGGC 59.254 41.667 6.13 0.00 0.00 6.53
2166 2300 3.728076 ATAAAATCTACTCTCGCGGCA 57.272 42.857 6.13 0.00 0.00 5.69
2167 2301 2.604046 AAAATCTACTCTCGCGGCAT 57.396 45.000 6.13 0.00 0.00 4.40
2168 2302 2.604046 AAATCTACTCTCGCGGCATT 57.396 45.000 6.13 0.00 0.00 3.56
2169 2303 3.728076 AAATCTACTCTCGCGGCATTA 57.272 42.857 6.13 0.00 0.00 1.90
2170 2304 2.708386 ATCTACTCTCGCGGCATTAC 57.292 50.000 6.13 0.00 0.00 1.89
2171 2305 1.385528 TCTACTCTCGCGGCATTACA 58.614 50.000 6.13 0.00 0.00 2.41
2172 2306 1.746787 TCTACTCTCGCGGCATTACAA 59.253 47.619 6.13 0.00 0.00 2.41
2173 2307 1.852895 CTACTCTCGCGGCATTACAAC 59.147 52.381 6.13 0.00 0.00 3.32
2174 2308 0.037697 ACTCTCGCGGCATTACAACA 60.038 50.000 6.13 0.00 0.00 3.33
2175 2309 0.370273 CTCTCGCGGCATTACAACAC 59.630 55.000 6.13 0.00 0.00 3.32
2176 2310 0.037697 TCTCGCGGCATTACAACACT 60.038 50.000 6.13 0.00 0.00 3.55
2177 2311 0.370273 CTCGCGGCATTACAACACTC 59.630 55.000 6.13 0.00 0.00 3.51
2178 2312 0.319986 TCGCGGCATTACAACACTCA 60.320 50.000 6.13 0.00 0.00 3.41
2179 2313 0.515127 CGCGGCATTACAACACTCAA 59.485 50.000 0.00 0.00 0.00 3.02
2180 2314 1.069568 CGCGGCATTACAACACTCAAA 60.070 47.619 0.00 0.00 0.00 2.69
2181 2315 2.414029 CGCGGCATTACAACACTCAAAT 60.414 45.455 0.00 0.00 0.00 2.32
2182 2316 2.916716 GCGGCATTACAACACTCAAATG 59.083 45.455 0.00 0.00 33.45 2.32
2186 2320 5.505165 GCATTACAACACTCAAATGCTTG 57.495 39.130 10.71 0.00 46.71 4.01
2187 2321 4.386652 GCATTACAACACTCAAATGCTTGG 59.613 41.667 10.71 0.00 46.71 3.61
2188 2322 2.514205 ACAACACTCAAATGCTTGGC 57.486 45.000 0.00 0.00 33.01 4.52
2189 2323 1.269206 ACAACACTCAAATGCTTGGCG 60.269 47.619 0.00 0.00 33.01 5.69
2190 2324 0.318955 AACACTCAAATGCTTGGCGC 60.319 50.000 0.00 0.00 39.77 6.53
2191 2325 1.444895 CACTCAAATGCTTGGCGCC 60.445 57.895 22.73 22.73 38.05 6.53
2192 2326 2.182537 CTCAAATGCTTGGCGCCC 59.817 61.111 26.77 9.46 38.05 6.13
2193 2327 3.688475 CTCAAATGCTTGGCGCCCG 62.688 63.158 26.77 16.62 38.05 6.13
2216 2350 3.056328 GCCCAAAGCGACACCTCC 61.056 66.667 0.00 0.00 0.00 4.30
2217 2351 2.750350 CCCAAAGCGACACCTCCT 59.250 61.111 0.00 0.00 0.00 3.69
2218 2352 1.376037 CCCAAAGCGACACCTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
2219 2353 1.674057 CCAAAGCGACACCTCCTCT 59.326 57.895 0.00 0.00 0.00 3.69
2220 2354 0.035458 CCAAAGCGACACCTCCTCTT 59.965 55.000 0.00 0.00 0.00 2.85
2221 2355 1.543429 CCAAAGCGACACCTCCTCTTT 60.543 52.381 0.00 0.00 0.00 2.52
2222 2356 2.222027 CAAAGCGACACCTCCTCTTTT 58.778 47.619 0.00 0.00 0.00 2.27
2223 2357 3.399330 CAAAGCGACACCTCCTCTTTTA 58.601 45.455 0.00 0.00 0.00 1.52
2224 2358 3.983044 AAGCGACACCTCCTCTTTTAT 57.017 42.857 0.00 0.00 0.00 1.40
2225 2359 3.528597 AGCGACACCTCCTCTTTTATC 57.471 47.619 0.00 0.00 0.00 1.75
2226 2360 3.100671 AGCGACACCTCCTCTTTTATCT 58.899 45.455 0.00 0.00 0.00 1.98
2227 2361 3.515901 AGCGACACCTCCTCTTTTATCTT 59.484 43.478 0.00 0.00 0.00 2.40
2228 2362 4.710375 AGCGACACCTCCTCTTTTATCTTA 59.290 41.667 0.00 0.00 0.00 2.10
2229 2363 4.804665 GCGACACCTCCTCTTTTATCTTAC 59.195 45.833 0.00 0.00 0.00 2.34
2230 2364 5.394333 GCGACACCTCCTCTTTTATCTTACT 60.394 44.000 0.00 0.00 0.00 2.24
2231 2365 6.183360 GCGACACCTCCTCTTTTATCTTACTA 60.183 42.308 0.00 0.00 0.00 1.82
2232 2366 7.630082 GCGACACCTCCTCTTTTATCTTACTAA 60.630 40.741 0.00 0.00 0.00 2.24
2233 2367 8.414778 CGACACCTCCTCTTTTATCTTACTAAT 58.585 37.037 0.00 0.00 0.00 1.73
2234 2368 9.535878 GACACCTCCTCTTTTATCTTACTAATG 57.464 37.037 0.00 0.00 0.00 1.90
2235 2369 9.268282 ACACCTCCTCTTTTATCTTACTAATGA 57.732 33.333 0.00 0.00 0.00 2.57
2236 2370 9.535878 CACCTCCTCTTTTATCTTACTAATGAC 57.464 37.037 0.00 0.00 0.00 3.06
2237 2371 8.414778 ACCTCCTCTTTTATCTTACTAATGACG 58.585 37.037 0.00 0.00 0.00 4.35
2238 2372 8.630917 CCTCCTCTTTTATCTTACTAATGACGA 58.369 37.037 0.00 0.00 0.00 4.20
2239 2373 9.453325 CTCCTCTTTTATCTTACTAATGACGAC 57.547 37.037 0.00 0.00 0.00 4.34
2240 2374 8.411683 TCCTCTTTTATCTTACTAATGACGACC 58.588 37.037 0.00 0.00 0.00 4.79
2241 2375 8.195436 CCTCTTTTATCTTACTAATGACGACCA 58.805 37.037 0.00 0.00 0.00 4.02
2242 2376 9.751542 CTCTTTTATCTTACTAATGACGACCAT 57.248 33.333 0.00 0.00 36.99 3.55
2243 2377 9.745880 TCTTTTATCTTACTAATGACGACCATC 57.254 33.333 0.00 0.00 33.53 3.51
2244 2378 8.570096 TTTTATCTTACTAATGACGACCATCG 57.430 34.615 0.00 0.00 46.93 3.84
2253 2387 2.278596 CGACCATCGTAGGTGCGG 60.279 66.667 6.28 0.00 43.38 5.69
2254 2388 2.585247 GACCATCGTAGGTGCGGC 60.585 66.667 6.28 0.00 43.38 6.53
2255 2389 4.157120 ACCATCGTAGGTGCGGCC 62.157 66.667 0.00 0.00 41.30 6.13
2257 2391 4.508128 CATCGTAGGTGCGGCCGT 62.508 66.667 28.70 9.45 43.70 5.68
2258 2392 4.508128 ATCGTAGGTGCGGCCGTG 62.508 66.667 28.70 8.17 43.70 4.94
2261 2395 3.419759 GTAGGTGCGGCCGTGTTG 61.420 66.667 28.70 0.00 43.70 3.33
2267 2401 4.615834 GCGGCCGTGTTGCGAAAA 62.616 61.111 28.70 0.00 44.77 2.29
2268 2402 2.724358 CGGCCGTGTTGCGAAAAC 60.724 61.111 19.50 0.00 44.77 2.43
2269 2403 2.354188 GGCCGTGTTGCGAAAACC 60.354 61.111 0.00 0.00 44.77 3.27
2270 2404 2.719354 GCCGTGTTGCGAAAACCT 59.281 55.556 0.00 0.00 44.77 3.50
2271 2405 1.370051 GCCGTGTTGCGAAAACCTC 60.370 57.895 0.00 0.00 44.77 3.85
2272 2406 1.782028 GCCGTGTTGCGAAAACCTCT 61.782 55.000 0.00 0.00 44.77 3.69
2273 2407 1.504359 CCGTGTTGCGAAAACCTCTA 58.496 50.000 0.00 0.00 44.77 2.43
2274 2408 1.459592 CCGTGTTGCGAAAACCTCTAG 59.540 52.381 0.00 0.00 44.77 2.43
2275 2409 1.136336 CGTGTTGCGAAAACCTCTAGC 60.136 52.381 0.00 0.00 44.77 3.42
2276 2410 1.871039 GTGTTGCGAAAACCTCTAGCA 59.129 47.619 0.00 0.00 35.90 3.49
2277 2411 2.484264 GTGTTGCGAAAACCTCTAGCAT 59.516 45.455 0.00 0.00 37.68 3.79
2278 2412 3.058224 GTGTTGCGAAAACCTCTAGCATT 60.058 43.478 0.00 0.00 37.68 3.56
2279 2413 3.058293 TGTTGCGAAAACCTCTAGCATTG 60.058 43.478 0.00 0.00 37.68 2.82
2280 2414 1.468520 TGCGAAAACCTCTAGCATTGC 59.531 47.619 0.00 0.00 32.43 3.56
2281 2415 1.529826 GCGAAAACCTCTAGCATTGCG 60.530 52.381 2.38 0.00 0.00 4.85
2282 2416 1.529826 CGAAAACCTCTAGCATTGCGC 60.530 52.381 0.00 0.00 42.91 6.09
2291 2425 3.430862 GCATTGCGCTCCGTCCAA 61.431 61.111 9.73 0.00 37.77 3.53
2292 2426 2.976840 GCATTGCGCTCCGTCCAAA 61.977 57.895 9.73 0.00 37.77 3.28
2293 2427 1.802636 CATTGCGCTCCGTCCAAAT 59.197 52.632 9.73 0.00 0.00 2.32
2294 2428 0.171007 CATTGCGCTCCGTCCAAATT 59.829 50.000 9.73 0.00 0.00 1.82
2295 2429 0.887933 ATTGCGCTCCGTCCAAATTT 59.112 45.000 9.73 0.00 0.00 1.82
2296 2430 0.239879 TTGCGCTCCGTCCAAATTTC 59.760 50.000 9.73 0.00 0.00 2.17
2297 2431 1.136774 GCGCTCCGTCCAAATTTCC 59.863 57.895 0.00 0.00 0.00 3.13
2298 2432 1.800681 CGCTCCGTCCAAATTTCCC 59.199 57.895 0.00 0.00 0.00 3.97
2299 2433 0.958382 CGCTCCGTCCAAATTTCCCA 60.958 55.000 0.00 0.00 0.00 4.37
2300 2434 0.811281 GCTCCGTCCAAATTTCCCAG 59.189 55.000 0.00 0.00 0.00 4.45
2301 2435 1.463674 CTCCGTCCAAATTTCCCAGG 58.536 55.000 0.00 0.00 0.00 4.45
2302 2436 1.004277 CTCCGTCCAAATTTCCCAGGA 59.996 52.381 0.00 0.00 0.00 3.86
2303 2437 1.004277 TCCGTCCAAATTTCCCAGGAG 59.996 52.381 0.00 0.00 0.00 3.69
2304 2438 1.004277 CCGTCCAAATTTCCCAGGAGA 59.996 52.381 0.00 0.00 0.00 3.71
2305 2439 2.357154 CCGTCCAAATTTCCCAGGAGAT 60.357 50.000 0.00 0.00 0.00 2.75
2306 2440 3.118038 CCGTCCAAATTTCCCAGGAGATA 60.118 47.826 0.00 0.00 0.00 1.98
2307 2441 4.523083 CGTCCAAATTTCCCAGGAGATAA 58.477 43.478 0.00 0.00 0.00 1.75
2308 2442 4.576463 CGTCCAAATTTCCCAGGAGATAAG 59.424 45.833 0.00 0.00 0.00 1.73
2309 2443 4.339530 GTCCAAATTTCCCAGGAGATAAGC 59.660 45.833 0.00 0.00 0.00 3.09
2310 2444 4.017591 TCCAAATTTCCCAGGAGATAAGCA 60.018 41.667 0.00 0.00 0.00 3.91
2311 2445 4.897670 CCAAATTTCCCAGGAGATAAGCAT 59.102 41.667 0.00 0.00 0.00 3.79
2312 2446 5.010415 CCAAATTTCCCAGGAGATAAGCATC 59.990 44.000 0.00 0.00 0.00 3.91
2313 2447 5.393068 AATTTCCCAGGAGATAAGCATCA 57.607 39.130 0.00 0.00 33.21 3.07
2314 2448 5.595814 ATTTCCCAGGAGATAAGCATCAT 57.404 39.130 0.00 0.00 33.21 2.45
2315 2449 5.393068 TTTCCCAGGAGATAAGCATCATT 57.607 39.130 0.00 0.00 33.21 2.57
2316 2450 6.514012 TTTCCCAGGAGATAAGCATCATTA 57.486 37.500 0.00 0.00 33.21 1.90
2317 2451 6.708885 TTCCCAGGAGATAAGCATCATTAT 57.291 37.500 0.00 0.00 33.21 1.28
2318 2452 6.708885 TCCCAGGAGATAAGCATCATTATT 57.291 37.500 0.00 0.00 33.21 1.40
2319 2453 6.479006 TCCCAGGAGATAAGCATCATTATTG 58.521 40.000 0.00 0.00 33.21 1.90
2320 2454 6.273026 TCCCAGGAGATAAGCATCATTATTGA 59.727 38.462 0.00 0.00 36.00 2.57
2321 2455 6.598457 CCCAGGAGATAAGCATCATTATTGAG 59.402 42.308 0.00 0.00 34.73 3.02
2322 2456 6.598457 CCAGGAGATAAGCATCATTATTGAGG 59.402 42.308 0.00 0.00 36.73 3.86
2328 2462 2.869358 CATCATTATTGAGGCGAGCG 57.131 50.000 0.00 0.00 34.73 5.03
2329 2463 2.138320 CATCATTATTGAGGCGAGCGT 58.862 47.619 0.00 0.00 34.73 5.07
2330 2464 1.852942 TCATTATTGAGGCGAGCGTC 58.147 50.000 10.45 10.45 0.00 5.19
2331 2465 1.409064 TCATTATTGAGGCGAGCGTCT 59.591 47.619 16.98 5.71 0.00 4.18
2332 2466 2.159099 TCATTATTGAGGCGAGCGTCTT 60.159 45.455 16.98 8.58 0.00 3.01
2333 2467 1.640428 TTATTGAGGCGAGCGTCTTG 58.360 50.000 16.98 0.00 0.00 3.02
2334 2468 0.179111 TATTGAGGCGAGCGTCTTGG 60.179 55.000 16.98 0.00 0.00 3.61
2335 2469 2.859273 ATTGAGGCGAGCGTCTTGGG 62.859 60.000 16.98 0.00 0.00 4.12
2336 2470 4.821589 GAGGCGAGCGTCTTGGGG 62.822 72.222 10.14 0.00 0.00 4.96
2339 2473 4.162690 GCGAGCGTCTTGGGGGAT 62.163 66.667 0.00 0.00 0.00 3.85
2340 2474 2.584608 CGAGCGTCTTGGGGGATT 59.415 61.111 0.00 0.00 0.00 3.01
2341 2475 1.521681 CGAGCGTCTTGGGGGATTC 60.522 63.158 0.00 0.00 0.00 2.52
2342 2476 1.602237 GAGCGTCTTGGGGGATTCA 59.398 57.895 0.00 0.00 0.00 2.57
2343 2477 0.462759 GAGCGTCTTGGGGGATTCAG 60.463 60.000 0.00 0.00 0.00 3.02
2344 2478 0.909610 AGCGTCTTGGGGGATTCAGA 60.910 55.000 0.00 0.00 0.00 3.27
2345 2479 0.462759 GCGTCTTGGGGGATTCAGAG 60.463 60.000 0.00 0.00 0.00 3.35
2346 2480 0.462759 CGTCTTGGGGGATTCAGAGC 60.463 60.000 0.00 0.00 0.00 4.09
2347 2481 0.462759 GTCTTGGGGGATTCAGAGCG 60.463 60.000 0.00 0.00 0.00 5.03
2348 2482 0.617535 TCTTGGGGGATTCAGAGCGA 60.618 55.000 0.00 0.00 0.00 4.93
2349 2483 0.253044 CTTGGGGGATTCAGAGCGAA 59.747 55.000 0.00 0.00 38.22 4.70
2350 2484 0.253044 TTGGGGGATTCAGAGCGAAG 59.747 55.000 0.00 0.00 36.95 3.79
2351 2485 0.617535 TGGGGGATTCAGAGCGAAGA 60.618 55.000 0.00 0.00 36.95 2.87
2352 2486 0.761802 GGGGGATTCAGAGCGAAGAT 59.238 55.000 0.00 0.00 36.95 2.40
2353 2487 1.971357 GGGGGATTCAGAGCGAAGATA 59.029 52.381 0.00 0.00 36.95 1.98
2354 2488 2.569404 GGGGGATTCAGAGCGAAGATAT 59.431 50.000 0.00 0.00 36.95 1.63
2355 2489 3.769844 GGGGGATTCAGAGCGAAGATATA 59.230 47.826 0.00 0.00 36.95 0.86
2356 2490 4.382147 GGGGGATTCAGAGCGAAGATATAC 60.382 50.000 0.00 0.00 36.95 1.47
2357 2491 4.416620 GGGATTCAGAGCGAAGATATACG 58.583 47.826 0.00 0.00 36.95 3.06
2358 2492 4.082679 GGGATTCAGAGCGAAGATATACGT 60.083 45.833 0.00 0.00 36.95 3.57
2359 2493 5.462405 GGATTCAGAGCGAAGATATACGTT 58.538 41.667 0.00 0.00 36.95 3.99
2360 2494 5.921408 GGATTCAGAGCGAAGATATACGTTT 59.079 40.000 0.00 0.00 36.95 3.60
2361 2495 6.088350 GGATTCAGAGCGAAGATATACGTTTC 59.912 42.308 0.00 0.00 36.95 2.78
2362 2496 4.856664 TCAGAGCGAAGATATACGTTTCC 58.143 43.478 0.00 0.00 0.00 3.13
2363 2497 4.337274 TCAGAGCGAAGATATACGTTTCCA 59.663 41.667 0.00 0.00 0.00 3.53
2364 2498 5.009710 TCAGAGCGAAGATATACGTTTCCAT 59.990 40.000 0.00 0.00 0.00 3.41
2365 2499 5.692204 CAGAGCGAAGATATACGTTTCCATT 59.308 40.000 0.00 0.00 0.00 3.16
2366 2500 5.921408 AGAGCGAAGATATACGTTTCCATTC 59.079 40.000 0.00 0.00 0.00 2.67
2367 2501 4.989168 AGCGAAGATATACGTTTCCATTCC 59.011 41.667 0.00 0.00 0.00 3.01
2368 2502 4.748102 GCGAAGATATACGTTTCCATTCCA 59.252 41.667 0.00 0.00 0.00 3.53
2369 2503 5.333111 GCGAAGATATACGTTTCCATTCCAC 60.333 44.000 0.00 0.00 0.00 4.02
2370 2504 5.176958 CGAAGATATACGTTTCCATTCCACC 59.823 44.000 0.00 0.00 0.00 4.61
2371 2505 5.623956 AGATATACGTTTCCATTCCACCA 57.376 39.130 0.00 0.00 0.00 4.17
2372 2506 6.187727 AGATATACGTTTCCATTCCACCAT 57.812 37.500 0.00 0.00 0.00 3.55
2373 2507 6.601332 AGATATACGTTTCCATTCCACCATT 58.399 36.000 0.00 0.00 0.00 3.16
2374 2508 6.710744 AGATATACGTTTCCATTCCACCATTC 59.289 38.462 0.00 0.00 0.00 2.67
2375 2509 2.167662 ACGTTTCCATTCCACCATTCC 58.832 47.619 0.00 0.00 0.00 3.01
2376 2510 1.476488 CGTTTCCATTCCACCATTCCC 59.524 52.381 0.00 0.00 0.00 3.97
2377 2511 2.534990 GTTTCCATTCCACCATTCCCA 58.465 47.619 0.00 0.00 0.00 4.37
2378 2512 2.230130 TTCCATTCCACCATTCCCAC 57.770 50.000 0.00 0.00 0.00 4.61
2379 2513 1.079796 TCCATTCCACCATTCCCACA 58.920 50.000 0.00 0.00 0.00 4.17
2380 2514 1.185315 CCATTCCACCATTCCCACAC 58.815 55.000 0.00 0.00 0.00 3.82
2381 2515 1.185315 CATTCCACCATTCCCACACC 58.815 55.000 0.00 0.00 0.00 4.16
2382 2516 0.323360 ATTCCACCATTCCCACACCG 60.323 55.000 0.00 0.00 0.00 4.94
2383 2517 1.419720 TTCCACCATTCCCACACCGA 61.420 55.000 0.00 0.00 0.00 4.69
2384 2518 1.377202 CCACCATTCCCACACCGAG 60.377 63.158 0.00 0.00 0.00 4.63
2385 2519 2.040544 CACCATTCCCACACCGAGC 61.041 63.158 0.00 0.00 0.00 5.03
2386 2520 2.438434 CCATTCCCACACCGAGCC 60.438 66.667 0.00 0.00 0.00 4.70
2387 2521 2.438434 CATTCCCACACCGAGCCC 60.438 66.667 0.00 0.00 0.00 5.19
2388 2522 3.728373 ATTCCCACACCGAGCCCC 61.728 66.667 0.00 0.00 0.00 5.80
2389 2523 4.974438 TTCCCACACCGAGCCCCT 62.974 66.667 0.00 0.00 0.00 4.79
2401 2535 4.021925 GCCCCTCGCTGACCAAGT 62.022 66.667 0.00 0.00 0.00 3.16
2402 2536 2.656069 GCCCCTCGCTGACCAAGTA 61.656 63.158 0.00 0.00 0.00 2.24
2403 2537 1.517832 CCCCTCGCTGACCAAGTAG 59.482 63.158 0.00 0.00 0.00 2.57
2404 2538 1.258445 CCCCTCGCTGACCAAGTAGT 61.258 60.000 0.00 0.00 0.00 2.73
2405 2539 1.471119 CCCTCGCTGACCAAGTAGTA 58.529 55.000 0.00 0.00 0.00 1.82
2406 2540 1.405821 CCCTCGCTGACCAAGTAGTAG 59.594 57.143 0.00 0.00 0.00 2.57
2407 2541 1.202313 CCTCGCTGACCAAGTAGTAGC 60.202 57.143 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
521 539 2.959071 GCGGTGCGAGCAGATCTC 60.959 66.667 0.00 0.00 38.47 2.75
624 643 3.591225 TCAATACATGACCGCCTAGCGA 61.591 50.000 11.09 0.00 43.73 4.93
626 645 2.526304 TCAATACATGACCGCCTAGC 57.474 50.000 0.00 0.00 31.50 3.42
629 702 1.837439 TCCTTCAATACATGACCGCCT 59.163 47.619 0.00 0.00 37.92 5.52
639 712 5.129485 TCACCTCTTCCAGATCCTTCAATAC 59.871 44.000 0.00 0.00 0.00 1.89
640 713 5.280499 TCACCTCTTCCAGATCCTTCAATA 58.720 41.667 0.00 0.00 0.00 1.90
681 759 0.460109 TCAGATCACGCAACCCGATG 60.460 55.000 0.00 0.00 41.02 3.84
682 760 0.465705 ATCAGATCACGCAACCCGAT 59.534 50.000 0.00 0.00 41.02 4.18
683 761 0.179111 GATCAGATCACGCAACCCGA 60.179 55.000 5.44 0.00 41.02 5.14
684 762 1.482621 CGATCAGATCACGCAACCCG 61.483 60.000 11.12 0.00 44.21 5.28
739 817 5.063880 GGAGACAAGCTAGTGAAAGGAAAA 58.936 41.667 0.00 0.00 0.00 2.29
832 920 1.271656 CTCAAAGGAAAAGCAGCAGGG 59.728 52.381 0.00 0.00 0.00 4.45
839 927 0.964700 AGCCTGCTCAAAGGAAAAGC 59.035 50.000 0.00 0.00 40.02 3.51
1164 1277 4.832608 CGGTAGAACCTGGCGGCC 62.833 72.222 13.32 13.32 35.66 6.13
1413 1531 5.525378 GCAGAGGGTGTAAATAGAATCACAG 59.475 44.000 0.00 0.00 33.17 3.66
1423 1541 1.449601 CCGCGCAGAGGGTGTAAAT 60.450 57.895 8.75 0.00 46.30 1.40
1482 1601 3.087031 CACACAGATGAAAGGCCAAGAT 58.913 45.455 5.01 0.00 0.00 2.40
1557 1676 4.470664 AGATTCCAGAGCACAGAAGAGATT 59.529 41.667 0.00 0.00 0.00 2.40
1582 1701 4.382457 CACAAATGTTGAATGTAACAGCGG 59.618 41.667 0.00 0.00 43.14 5.52
1679 1800 7.489435 TGCGACATTCAAAATTAACAAGACAAA 59.511 29.630 0.00 0.00 0.00 2.83
1680 1801 6.975197 TGCGACATTCAAAATTAACAAGACAA 59.025 30.769 0.00 0.00 0.00 3.18
1681 1802 6.499172 TGCGACATTCAAAATTAACAAGACA 58.501 32.000 0.00 0.00 0.00 3.41
1682 1803 6.984740 TGCGACATTCAAAATTAACAAGAC 57.015 33.333 0.00 0.00 0.00 3.01
1688 1809 9.645059 TTGGATTATTGCGACATTCAAAATTAA 57.355 25.926 0.00 0.00 0.00 1.40
1689 1810 9.814899 ATTGGATTATTGCGACATTCAAAATTA 57.185 25.926 0.00 0.00 0.00 1.40
1690 1811 8.721019 ATTGGATTATTGCGACATTCAAAATT 57.279 26.923 0.00 0.00 0.00 1.82
1691 1812 9.467258 CTATTGGATTATTGCGACATTCAAAAT 57.533 29.630 0.00 0.00 0.00 1.82
1693 1814 7.995289 ACTATTGGATTATTGCGACATTCAAA 58.005 30.769 0.00 0.00 0.00 2.69
1694 1815 7.566760 ACTATTGGATTATTGCGACATTCAA 57.433 32.000 0.00 0.00 0.00 2.69
1695 1816 7.566760 AACTATTGGATTATTGCGACATTCA 57.433 32.000 0.00 0.00 0.00 2.57
1696 1817 8.128582 TCAAACTATTGGATTATTGCGACATTC 58.871 33.333 0.00 0.00 37.15 2.67
1697 1818 7.995289 TCAAACTATTGGATTATTGCGACATT 58.005 30.769 0.00 0.00 37.15 2.71
1698 1819 7.566760 TCAAACTATTGGATTATTGCGACAT 57.433 32.000 0.00 0.00 37.15 3.06
1699 1820 6.993786 TCAAACTATTGGATTATTGCGACA 57.006 33.333 0.00 0.00 37.15 4.35
1700 1821 7.865707 AGATCAAACTATTGGATTATTGCGAC 58.134 34.615 0.00 0.00 37.15 5.19
1701 1822 8.450578 AAGATCAAACTATTGGATTATTGCGA 57.549 30.769 0.00 0.00 37.15 5.10
1702 1823 9.173939 GAAAGATCAAACTATTGGATTATTGCG 57.826 33.333 0.00 0.00 37.15 4.85
1708 1829 9.745018 TTCTCAGAAAGATCAAACTATTGGATT 57.255 29.630 0.00 0.00 37.15 3.01
1807 1928 4.870636 TCCCATTCATTCTTATGCACCTT 58.129 39.130 0.00 0.00 0.00 3.50
1809 1930 4.464008 TCTCCCATTCATTCTTATGCACC 58.536 43.478 0.00 0.00 0.00 5.01
1839 1960 0.741574 TTTGCGCTATGGGTGGTACG 60.742 55.000 9.73 0.00 0.00 3.67
1874 1996 2.910199 TCTGGTTGCTCTATGATGTGC 58.090 47.619 0.00 0.00 0.00 4.57
1891 2013 4.760530 TGTTTCTCAGGGGTATGATCTG 57.239 45.455 0.00 0.00 0.00 2.90
1922 2053 8.981647 GTTTTTCAGCACACATTTATGAATCTT 58.018 29.630 0.00 0.00 30.56 2.40
1952 2083 2.376915 TTTGCTGTCGCGTTAGTTTG 57.623 45.000 5.77 0.00 39.65 2.93
2039 2173 9.066892 ACTTCTTTTCTCTTGTTATACATTGCA 57.933 29.630 0.00 0.00 0.00 4.08
2040 2174 9.899226 AACTTCTTTTCTCTTGTTATACATTGC 57.101 29.630 0.00 0.00 0.00 3.56
2070 2204 6.850555 CAAATCCTTTGCCTTGTTTCAAAAA 58.149 32.000 0.00 0.00 33.36 1.94
2071 2205 6.434018 CAAATCCTTTGCCTTGTTTCAAAA 57.566 33.333 0.00 0.00 33.36 2.44
2084 2218 6.995511 ATCAATGAAATGGCAAATCCTTTG 57.004 33.333 0.00 0.82 43.44 2.77
2085 2219 9.169592 CTTAATCAATGAAATGGCAAATCCTTT 57.830 29.630 0.00 0.00 34.01 3.11
2086 2220 8.542080 TCTTAATCAATGAAATGGCAAATCCTT 58.458 29.630 0.00 0.00 35.26 3.36
2087 2221 8.081517 TCTTAATCAATGAAATGGCAAATCCT 57.918 30.769 0.00 0.00 35.26 3.24
2088 2222 8.721019 TTCTTAATCAATGAAATGGCAAATCC 57.279 30.769 0.00 0.00 0.00 3.01
2089 2223 9.590451 TCTTCTTAATCAATGAAATGGCAAATC 57.410 29.630 0.00 0.00 0.00 2.17
2090 2224 9.947433 TTCTTCTTAATCAATGAAATGGCAAAT 57.053 25.926 0.00 0.00 0.00 2.32
2091 2225 9.426837 CTTCTTCTTAATCAATGAAATGGCAAA 57.573 29.630 0.00 0.00 0.00 3.68
2092 2226 8.036575 CCTTCTTCTTAATCAATGAAATGGCAA 58.963 33.333 0.00 0.00 0.00 4.52
2093 2227 7.178983 ACCTTCTTCTTAATCAATGAAATGGCA 59.821 33.333 0.00 0.00 0.00 4.92
2094 2228 7.550712 ACCTTCTTCTTAATCAATGAAATGGC 58.449 34.615 0.00 0.00 0.00 4.40
2095 2229 9.933723 AAACCTTCTTCTTAATCAATGAAATGG 57.066 29.630 0.00 0.00 0.00 3.16
2102 2236 9.454859 CCTGTCTAAACCTTCTTCTTAATCAAT 57.545 33.333 0.00 0.00 0.00 2.57
2103 2237 7.390718 GCCTGTCTAAACCTTCTTCTTAATCAA 59.609 37.037 0.00 0.00 0.00 2.57
2104 2238 6.879458 GCCTGTCTAAACCTTCTTCTTAATCA 59.121 38.462 0.00 0.00 0.00 2.57
2105 2239 6.316640 GGCCTGTCTAAACCTTCTTCTTAATC 59.683 42.308 0.00 0.00 0.00 1.75
2106 2240 6.181190 GGCCTGTCTAAACCTTCTTCTTAAT 58.819 40.000 0.00 0.00 0.00 1.40
2107 2241 5.072600 TGGCCTGTCTAAACCTTCTTCTTAA 59.927 40.000 3.32 0.00 0.00 1.85
2108 2242 4.595781 TGGCCTGTCTAAACCTTCTTCTTA 59.404 41.667 3.32 0.00 0.00 2.10
2109 2243 3.394606 TGGCCTGTCTAAACCTTCTTCTT 59.605 43.478 3.32 0.00 0.00 2.52
2110 2244 2.979678 TGGCCTGTCTAAACCTTCTTCT 59.020 45.455 3.32 0.00 0.00 2.85
2111 2245 3.075148 GTGGCCTGTCTAAACCTTCTTC 58.925 50.000 3.32 0.00 0.00 2.87
2112 2246 2.550208 CGTGGCCTGTCTAAACCTTCTT 60.550 50.000 3.32 0.00 0.00 2.52
2113 2247 1.002087 CGTGGCCTGTCTAAACCTTCT 59.998 52.381 3.32 0.00 0.00 2.85
2114 2248 1.001633 TCGTGGCCTGTCTAAACCTTC 59.998 52.381 3.32 0.00 0.00 3.46
2115 2249 1.053424 TCGTGGCCTGTCTAAACCTT 58.947 50.000 3.32 0.00 0.00 3.50
2116 2250 1.002087 CTTCGTGGCCTGTCTAAACCT 59.998 52.381 3.32 0.00 0.00 3.50
2117 2251 1.270678 ACTTCGTGGCCTGTCTAAACC 60.271 52.381 3.32 0.00 0.00 3.27
2118 2252 1.798813 CACTTCGTGGCCTGTCTAAAC 59.201 52.381 3.32 0.00 0.00 2.01
2119 2253 2.163818 CACTTCGTGGCCTGTCTAAA 57.836 50.000 3.32 0.00 0.00 1.85
2120 2254 3.906660 CACTTCGTGGCCTGTCTAA 57.093 52.632 3.32 0.00 0.00 2.10
2130 2264 6.381801 AGATTTTATTTCTTGCCACTTCGTG 58.618 36.000 0.00 0.00 0.00 4.35
2131 2265 6.575162 AGATTTTATTTCTTGCCACTTCGT 57.425 33.333 0.00 0.00 0.00 3.85
2132 2266 7.752695 AGTAGATTTTATTTCTTGCCACTTCG 58.247 34.615 0.00 0.00 0.00 3.79
2133 2267 8.951243 AGAGTAGATTTTATTTCTTGCCACTTC 58.049 33.333 0.00 0.00 0.00 3.01
2134 2268 8.870075 AGAGTAGATTTTATTTCTTGCCACTT 57.130 30.769 0.00 0.00 0.00 3.16
2135 2269 7.278868 CGAGAGTAGATTTTATTTCTTGCCACT 59.721 37.037 0.00 0.00 0.00 4.00
2136 2270 7.402640 CGAGAGTAGATTTTATTTCTTGCCAC 58.597 38.462 0.00 0.00 0.00 5.01
2137 2271 6.037172 GCGAGAGTAGATTTTATTTCTTGCCA 59.963 38.462 0.00 0.00 36.52 4.92
2138 2272 6.423042 GCGAGAGTAGATTTTATTTCTTGCC 58.577 40.000 0.00 0.00 36.52 4.52
2139 2273 6.123441 CGCGAGAGTAGATTTTATTTCTTGC 58.877 40.000 0.00 2.24 38.24 4.01
2140 2274 6.641062 CCGCGAGAGTAGATTTTATTTCTTG 58.359 40.000 8.23 0.00 0.00 3.02
2141 2275 5.234543 GCCGCGAGAGTAGATTTTATTTCTT 59.765 40.000 8.23 0.00 0.00 2.52
2142 2276 4.745620 GCCGCGAGAGTAGATTTTATTTCT 59.254 41.667 8.23 0.00 0.00 2.52
2143 2277 4.506654 TGCCGCGAGAGTAGATTTTATTTC 59.493 41.667 8.23 0.00 0.00 2.17
2144 2278 4.439057 TGCCGCGAGAGTAGATTTTATTT 58.561 39.130 8.23 0.00 0.00 1.40
2145 2279 4.054780 TGCCGCGAGAGTAGATTTTATT 57.945 40.909 8.23 0.00 0.00 1.40
2146 2280 3.728076 TGCCGCGAGAGTAGATTTTAT 57.272 42.857 8.23 0.00 0.00 1.40
2147 2281 3.728076 ATGCCGCGAGAGTAGATTTTA 57.272 42.857 8.23 0.00 0.00 1.52
2148 2282 2.604046 ATGCCGCGAGAGTAGATTTT 57.396 45.000 8.23 0.00 0.00 1.82
2149 2283 2.604046 AATGCCGCGAGAGTAGATTT 57.396 45.000 8.23 0.00 0.00 2.17
2150 2284 2.361119 TGTAATGCCGCGAGAGTAGATT 59.639 45.455 8.23 0.00 0.00 2.40
2151 2285 1.954382 TGTAATGCCGCGAGAGTAGAT 59.046 47.619 8.23 0.00 0.00 1.98
2152 2286 1.385528 TGTAATGCCGCGAGAGTAGA 58.614 50.000 8.23 0.00 0.00 2.59
2153 2287 1.852895 GTTGTAATGCCGCGAGAGTAG 59.147 52.381 8.23 0.00 0.00 2.57
2154 2288 1.202817 TGTTGTAATGCCGCGAGAGTA 59.797 47.619 8.23 0.00 0.00 2.59
2155 2289 0.037697 TGTTGTAATGCCGCGAGAGT 60.038 50.000 8.23 0.00 0.00 3.24
2156 2290 0.370273 GTGTTGTAATGCCGCGAGAG 59.630 55.000 8.23 0.00 0.00 3.20
2157 2291 0.037697 AGTGTTGTAATGCCGCGAGA 60.038 50.000 8.23 0.00 0.00 4.04
2158 2292 0.370273 GAGTGTTGTAATGCCGCGAG 59.630 55.000 8.23 0.00 0.00 5.03
2159 2293 0.319986 TGAGTGTTGTAATGCCGCGA 60.320 50.000 8.23 0.00 0.00 5.87
2160 2294 0.515127 TTGAGTGTTGTAATGCCGCG 59.485 50.000 0.00 0.00 0.00 6.46
2161 2295 2.697431 TTTGAGTGTTGTAATGCCGC 57.303 45.000 0.00 0.00 0.00 6.53
2162 2296 2.916716 GCATTTGAGTGTTGTAATGCCG 59.083 45.455 0.00 0.00 44.28 5.69
2165 2299 4.386652 GCCAAGCATTTGAGTGTTGTAATG 59.613 41.667 0.00 0.00 36.36 1.90
2166 2300 4.559153 GCCAAGCATTTGAGTGTTGTAAT 58.441 39.130 0.00 0.00 36.36 1.89
2167 2301 3.549827 CGCCAAGCATTTGAGTGTTGTAA 60.550 43.478 0.00 0.00 36.36 2.41
2168 2302 2.031245 CGCCAAGCATTTGAGTGTTGTA 60.031 45.455 0.00 0.00 36.36 2.41
2169 2303 1.269206 CGCCAAGCATTTGAGTGTTGT 60.269 47.619 0.00 0.00 36.36 3.32
2170 2304 1.411394 CGCCAAGCATTTGAGTGTTG 58.589 50.000 0.00 0.00 36.36 3.33
2171 2305 3.871775 CGCCAAGCATTTGAGTGTT 57.128 47.368 0.00 0.00 36.36 3.32
2199 2333 3.056328 GGAGGTGTCGCTTTGGGC 61.056 66.667 0.00 0.00 37.64 5.36
2200 2334 1.376037 GAGGAGGTGTCGCTTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
2201 2335 0.035458 AAGAGGAGGTGTCGCTTTGG 59.965 55.000 0.00 0.00 0.00 3.28
2202 2336 1.884235 AAAGAGGAGGTGTCGCTTTG 58.116 50.000 0.00 0.00 30.87 2.77
2203 2337 2.640316 AAAAGAGGAGGTGTCGCTTT 57.360 45.000 0.00 0.00 32.42 3.51
2204 2338 3.515901 AGATAAAAGAGGAGGTGTCGCTT 59.484 43.478 0.00 0.00 0.00 4.68
2205 2339 3.100671 AGATAAAAGAGGAGGTGTCGCT 58.899 45.455 0.00 0.00 0.00 4.93
2206 2340 3.528597 AGATAAAAGAGGAGGTGTCGC 57.471 47.619 0.00 0.00 0.00 5.19
2207 2341 6.210287 AGTAAGATAAAAGAGGAGGTGTCG 57.790 41.667 0.00 0.00 0.00 4.35
2208 2342 9.535878 CATTAGTAAGATAAAAGAGGAGGTGTC 57.464 37.037 0.00 0.00 0.00 3.67
2209 2343 9.268282 TCATTAGTAAGATAAAAGAGGAGGTGT 57.732 33.333 0.00 0.00 0.00 4.16
2210 2344 9.535878 GTCATTAGTAAGATAAAAGAGGAGGTG 57.464 37.037 0.00 0.00 0.00 4.00
2211 2345 8.414778 CGTCATTAGTAAGATAAAAGAGGAGGT 58.585 37.037 0.00 0.00 0.00 3.85
2212 2346 8.630917 TCGTCATTAGTAAGATAAAAGAGGAGG 58.369 37.037 0.00 0.00 0.00 4.30
2213 2347 9.453325 GTCGTCATTAGTAAGATAAAAGAGGAG 57.547 37.037 0.00 0.00 0.00 3.69
2214 2348 8.411683 GGTCGTCATTAGTAAGATAAAAGAGGA 58.588 37.037 0.00 0.00 0.00 3.71
2215 2349 8.195436 TGGTCGTCATTAGTAAGATAAAAGAGG 58.805 37.037 0.00 0.00 0.00 3.69
2216 2350 9.751542 ATGGTCGTCATTAGTAAGATAAAAGAG 57.248 33.333 0.00 0.00 30.55 2.85
2217 2351 9.745880 GATGGTCGTCATTAGTAAGATAAAAGA 57.254 33.333 0.00 0.00 35.97 2.52
2218 2352 8.691727 CGATGGTCGTCATTAGTAAGATAAAAG 58.308 37.037 0.00 0.00 35.97 2.27
2219 2353 8.570096 CGATGGTCGTCATTAGTAAGATAAAA 57.430 34.615 0.00 0.00 35.97 1.52
2236 2370 2.278596 CCGCACCTACGATGGTCG 60.279 66.667 0.00 0.00 46.93 4.79
2237 2371 2.585247 GCCGCACCTACGATGGTC 60.585 66.667 0.00 0.00 38.45 4.02
2238 2372 4.157120 GGCCGCACCTACGATGGT 62.157 66.667 0.00 0.00 41.77 3.55
2240 2374 4.508128 ACGGCCGCACCTACGATG 62.508 66.667 28.58 0.00 35.61 3.84
2241 2375 4.508128 CACGGCCGCACCTACGAT 62.508 66.667 28.58 0.00 35.61 3.73
2244 2378 3.419759 CAACACGGCCGCACCTAC 61.420 66.667 28.58 0.00 35.61 3.18
2250 2384 4.615834 TTTTCGCAACACGGCCGC 62.616 61.111 28.58 7.39 43.89 6.53
2251 2385 2.724358 GTTTTCGCAACACGGCCG 60.724 61.111 26.86 26.86 43.89 6.13
2252 2386 2.354188 GGTTTTCGCAACACGGCC 60.354 61.111 0.00 0.00 43.89 6.13
2253 2387 1.370051 GAGGTTTTCGCAACACGGC 60.370 57.895 0.00 0.00 43.89 5.68
2254 2388 1.459592 CTAGAGGTTTTCGCAACACGG 59.540 52.381 0.00 0.00 43.89 4.94
2255 2389 1.136336 GCTAGAGGTTTTCGCAACACG 60.136 52.381 0.00 0.00 45.62 4.49
2256 2390 1.871039 TGCTAGAGGTTTTCGCAACAC 59.129 47.619 0.00 0.00 0.00 3.32
2257 2391 2.248280 TGCTAGAGGTTTTCGCAACA 57.752 45.000 0.00 0.00 0.00 3.33
2258 2392 3.492313 CAATGCTAGAGGTTTTCGCAAC 58.508 45.455 0.00 0.00 33.94 4.17
2259 2393 2.095263 GCAATGCTAGAGGTTTTCGCAA 60.095 45.455 0.00 0.00 33.94 4.85
2260 2394 1.468520 GCAATGCTAGAGGTTTTCGCA 59.531 47.619 0.00 0.00 34.83 5.10
2261 2395 1.529826 CGCAATGCTAGAGGTTTTCGC 60.530 52.381 2.94 0.00 0.00 4.70
2262 2396 1.529826 GCGCAATGCTAGAGGTTTTCG 60.530 52.381 0.30 0.00 41.73 3.46
2263 2397 2.179949 GCGCAATGCTAGAGGTTTTC 57.820 50.000 0.30 0.00 41.73 2.29
2274 2408 2.270297 ATTTGGACGGAGCGCAATGC 62.270 55.000 11.47 0.00 46.98 3.56
2275 2409 0.171007 AATTTGGACGGAGCGCAATG 59.829 50.000 11.47 0.00 0.00 2.82
2276 2410 0.887933 AAATTTGGACGGAGCGCAAT 59.112 45.000 11.47 0.00 0.00 3.56
2277 2411 0.239879 GAAATTTGGACGGAGCGCAA 59.760 50.000 11.47 0.00 0.00 4.85
2278 2412 1.582610 GGAAATTTGGACGGAGCGCA 61.583 55.000 11.47 0.00 0.00 6.09
2279 2413 1.136774 GGAAATTTGGACGGAGCGC 59.863 57.895 0.00 0.00 0.00 5.92
2280 2414 0.958382 TGGGAAATTTGGACGGAGCG 60.958 55.000 0.00 0.00 0.00 5.03
2281 2415 0.811281 CTGGGAAATTTGGACGGAGC 59.189 55.000 0.00 0.00 0.00 4.70
2282 2416 1.004277 TCCTGGGAAATTTGGACGGAG 59.996 52.381 0.00 0.00 0.00 4.63
2283 2417 1.004277 CTCCTGGGAAATTTGGACGGA 59.996 52.381 0.00 0.00 0.00 4.69
2284 2418 1.004277 TCTCCTGGGAAATTTGGACGG 59.996 52.381 0.00 0.00 0.00 4.79
2285 2419 2.489938 TCTCCTGGGAAATTTGGACG 57.510 50.000 0.00 0.00 0.00 4.79
2286 2420 4.339530 GCTTATCTCCTGGGAAATTTGGAC 59.660 45.833 0.00 0.00 0.00 4.02
2287 2421 4.017591 TGCTTATCTCCTGGGAAATTTGGA 60.018 41.667 0.00 0.00 0.00 3.53
2288 2422 4.280819 TGCTTATCTCCTGGGAAATTTGG 58.719 43.478 0.00 0.00 0.00 3.28
2289 2423 5.595542 TGATGCTTATCTCCTGGGAAATTTG 59.404 40.000 0.00 0.00 0.00 2.32
2290 2424 5.769835 TGATGCTTATCTCCTGGGAAATTT 58.230 37.500 0.00 0.00 0.00 1.82
2291 2425 5.393068 TGATGCTTATCTCCTGGGAAATT 57.607 39.130 0.00 0.00 0.00 1.82
2292 2426 5.595814 ATGATGCTTATCTCCTGGGAAAT 57.404 39.130 0.00 0.00 0.00 2.17
2293 2427 5.393068 AATGATGCTTATCTCCTGGGAAA 57.607 39.130 0.00 0.00 0.00 3.13
2294 2428 6.708885 ATAATGATGCTTATCTCCTGGGAA 57.291 37.500 0.00 0.00 0.00 3.97
2295 2429 6.273026 TCAATAATGATGCTTATCTCCTGGGA 59.727 38.462 0.00 0.00 0.00 4.37
2296 2430 6.479006 TCAATAATGATGCTTATCTCCTGGG 58.521 40.000 0.00 0.00 0.00 4.45
2297 2431 6.598457 CCTCAATAATGATGCTTATCTCCTGG 59.402 42.308 0.00 0.00 34.37 4.45
2298 2432 6.093771 GCCTCAATAATGATGCTTATCTCCTG 59.906 42.308 1.21 0.00 42.07 3.86
2299 2433 6.179040 GCCTCAATAATGATGCTTATCTCCT 58.821 40.000 1.21 0.00 42.07 3.69
2300 2434 5.064452 CGCCTCAATAATGATGCTTATCTCC 59.936 44.000 6.51 0.00 42.85 3.71
2301 2435 5.871524 TCGCCTCAATAATGATGCTTATCTC 59.128 40.000 6.51 0.00 42.85 2.75
2302 2436 5.798132 TCGCCTCAATAATGATGCTTATCT 58.202 37.500 6.51 0.00 42.85 1.98
2303 2437 5.447010 GCTCGCCTCAATAATGATGCTTATC 60.447 44.000 6.51 0.00 42.85 1.75
2304 2438 4.394300 GCTCGCCTCAATAATGATGCTTAT 59.606 41.667 6.51 0.00 42.85 1.73
2305 2439 3.748048 GCTCGCCTCAATAATGATGCTTA 59.252 43.478 6.51 0.00 42.85 3.09
2306 2440 2.551459 GCTCGCCTCAATAATGATGCTT 59.449 45.455 6.51 0.00 42.85 3.91
2307 2441 2.149578 GCTCGCCTCAATAATGATGCT 58.850 47.619 6.51 0.00 42.85 3.79
2308 2442 1.136141 CGCTCGCCTCAATAATGATGC 60.136 52.381 0.00 0.00 41.96 3.91
2309 2443 2.138320 ACGCTCGCCTCAATAATGATG 58.862 47.619 0.00 0.00 34.37 3.07
2310 2444 2.036475 AGACGCTCGCCTCAATAATGAT 59.964 45.455 0.00 0.00 34.37 2.45
2311 2445 1.409064 AGACGCTCGCCTCAATAATGA 59.591 47.619 0.00 0.00 0.00 2.57
2312 2446 1.858091 AGACGCTCGCCTCAATAATG 58.142 50.000 0.00 0.00 0.00 1.90
2313 2447 2.205074 CAAGACGCTCGCCTCAATAAT 58.795 47.619 0.00 0.00 0.00 1.28
2314 2448 1.640428 CAAGACGCTCGCCTCAATAA 58.360 50.000 0.00 0.00 0.00 1.40
2315 2449 0.179111 CCAAGACGCTCGCCTCAATA 60.179 55.000 0.00 0.00 0.00 1.90
2316 2450 1.448540 CCAAGACGCTCGCCTCAAT 60.449 57.895 0.00 0.00 0.00 2.57
2317 2451 2.048222 CCAAGACGCTCGCCTCAA 60.048 61.111 0.00 0.00 0.00 3.02
2318 2452 4.069232 CCCAAGACGCTCGCCTCA 62.069 66.667 0.00 0.00 0.00 3.86
2319 2453 4.821589 CCCCAAGACGCTCGCCTC 62.822 72.222 0.00 0.00 0.00 4.70
2322 2456 3.682292 AATCCCCCAAGACGCTCGC 62.682 63.158 0.00 0.00 0.00 5.03
2323 2457 1.521681 GAATCCCCCAAGACGCTCG 60.522 63.158 0.00 0.00 0.00 5.03
2324 2458 0.462759 CTGAATCCCCCAAGACGCTC 60.463 60.000 0.00 0.00 0.00 5.03
2325 2459 0.909610 TCTGAATCCCCCAAGACGCT 60.910 55.000 0.00 0.00 0.00 5.07
2326 2460 0.462759 CTCTGAATCCCCCAAGACGC 60.463 60.000 0.00 0.00 0.00 5.19
2327 2461 0.462759 GCTCTGAATCCCCCAAGACG 60.463 60.000 0.00 0.00 0.00 4.18
2328 2462 0.462759 CGCTCTGAATCCCCCAAGAC 60.463 60.000 0.00 0.00 0.00 3.01
2329 2463 0.617535 TCGCTCTGAATCCCCCAAGA 60.618 55.000 0.00 0.00 0.00 3.02
2330 2464 0.253044 TTCGCTCTGAATCCCCCAAG 59.747 55.000 0.00 0.00 0.00 3.61
2331 2465 0.253044 CTTCGCTCTGAATCCCCCAA 59.747 55.000 0.00 0.00 35.63 4.12
2332 2466 0.617535 TCTTCGCTCTGAATCCCCCA 60.618 55.000 0.00 0.00 35.63 4.96
2333 2467 0.761802 ATCTTCGCTCTGAATCCCCC 59.238 55.000 0.00 0.00 35.63 5.40
2334 2468 3.971245 ATATCTTCGCTCTGAATCCCC 57.029 47.619 0.00 0.00 35.63 4.81
2335 2469 4.082679 ACGTATATCTTCGCTCTGAATCCC 60.083 45.833 0.00 0.00 35.63 3.85
2336 2470 5.049398 ACGTATATCTTCGCTCTGAATCC 57.951 43.478 0.00 0.00 35.63 3.01
2337 2471 6.088350 GGAAACGTATATCTTCGCTCTGAATC 59.912 42.308 0.00 0.00 35.63 2.52
2338 2472 5.921408 GGAAACGTATATCTTCGCTCTGAAT 59.079 40.000 0.00 0.00 35.63 2.57
2339 2473 5.163591 TGGAAACGTATATCTTCGCTCTGAA 60.164 40.000 0.00 0.00 34.74 3.02
2340 2474 4.337274 TGGAAACGTATATCTTCGCTCTGA 59.663 41.667 0.00 0.00 0.00 3.27
2341 2475 4.607955 TGGAAACGTATATCTTCGCTCTG 58.392 43.478 0.00 0.00 0.00 3.35
2342 2476 4.913335 TGGAAACGTATATCTTCGCTCT 57.087 40.909 0.00 0.00 0.00 4.09
2343 2477 5.118817 GGAATGGAAACGTATATCTTCGCTC 59.881 44.000 0.00 0.00 0.00 5.03
2344 2478 4.989168 GGAATGGAAACGTATATCTTCGCT 59.011 41.667 0.00 0.00 0.00 4.93
2345 2479 4.748102 TGGAATGGAAACGTATATCTTCGC 59.252 41.667 0.00 0.00 0.00 4.70
2346 2480 5.176958 GGTGGAATGGAAACGTATATCTTCG 59.823 44.000 0.00 0.00 0.00 3.79
2347 2481 6.053005 TGGTGGAATGGAAACGTATATCTTC 58.947 40.000 0.00 0.00 0.00 2.87
2348 2482 5.996644 TGGTGGAATGGAAACGTATATCTT 58.003 37.500 0.00 0.00 0.00 2.40
2349 2483 5.623956 TGGTGGAATGGAAACGTATATCT 57.376 39.130 0.00 0.00 0.00 1.98
2350 2484 6.072673 GGAATGGTGGAATGGAAACGTATATC 60.073 42.308 0.00 0.00 0.00 1.63
2351 2485 5.768164 GGAATGGTGGAATGGAAACGTATAT 59.232 40.000 0.00 0.00 0.00 0.86
2352 2486 5.127491 GGAATGGTGGAATGGAAACGTATA 58.873 41.667 0.00 0.00 0.00 1.47
2353 2487 3.951680 GGAATGGTGGAATGGAAACGTAT 59.048 43.478 0.00 0.00 0.00 3.06
2354 2488 3.349022 GGAATGGTGGAATGGAAACGTA 58.651 45.455 0.00 0.00 0.00 3.57
2355 2489 2.167662 GGAATGGTGGAATGGAAACGT 58.832 47.619 0.00 0.00 0.00 3.99
2356 2490 1.476488 GGGAATGGTGGAATGGAAACG 59.524 52.381 0.00 0.00 0.00 3.60
2357 2491 2.233676 GTGGGAATGGTGGAATGGAAAC 59.766 50.000 0.00 0.00 0.00 2.78
2358 2492 2.158249 TGTGGGAATGGTGGAATGGAAA 60.158 45.455 0.00 0.00 0.00 3.13
2359 2493 1.430853 TGTGGGAATGGTGGAATGGAA 59.569 47.619 0.00 0.00 0.00 3.53
2360 2494 1.079796 TGTGGGAATGGTGGAATGGA 58.920 50.000 0.00 0.00 0.00 3.41
2361 2495 1.185315 GTGTGGGAATGGTGGAATGG 58.815 55.000 0.00 0.00 0.00 3.16
2362 2496 1.185315 GGTGTGGGAATGGTGGAATG 58.815 55.000 0.00 0.00 0.00 2.67
2363 2497 0.323360 CGGTGTGGGAATGGTGGAAT 60.323 55.000 0.00 0.00 0.00 3.01
2364 2498 1.074072 CGGTGTGGGAATGGTGGAA 59.926 57.895 0.00 0.00 0.00 3.53
2365 2499 1.836999 CTCGGTGTGGGAATGGTGGA 61.837 60.000 0.00 0.00 0.00 4.02
2366 2500 1.377202 CTCGGTGTGGGAATGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
2367 2501 2.040544 GCTCGGTGTGGGAATGGTG 61.041 63.158 0.00 0.00 0.00 4.17
2368 2502 2.351276 GCTCGGTGTGGGAATGGT 59.649 61.111 0.00 0.00 0.00 3.55
2369 2503 2.438434 GGCTCGGTGTGGGAATGG 60.438 66.667 0.00 0.00 0.00 3.16
2370 2504 2.438434 GGGCTCGGTGTGGGAATG 60.438 66.667 0.00 0.00 0.00 2.67
2371 2505 3.728373 GGGGCTCGGTGTGGGAAT 61.728 66.667 0.00 0.00 0.00 3.01
2372 2506 4.974438 AGGGGCTCGGTGTGGGAA 62.974 66.667 0.00 0.00 0.00 3.97
2384 2518 2.579684 CTACTTGGTCAGCGAGGGGC 62.580 65.000 0.00 0.00 44.05 5.80
2385 2519 1.258445 ACTACTTGGTCAGCGAGGGG 61.258 60.000 0.00 0.00 0.00 4.79
2386 2520 1.405821 CTACTACTTGGTCAGCGAGGG 59.594 57.143 0.00 0.00 0.00 4.30
2387 2521 1.202313 GCTACTACTTGGTCAGCGAGG 60.202 57.143 0.00 0.00 0.00 4.63
2388 2522 2.196295 GCTACTACTTGGTCAGCGAG 57.804 55.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.