Multiple sequence alignment - TraesCS3B01G399000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G399000 chr3B 100.000 4136 0 0 1 4136 630296197 630300332 0.000000e+00 7638.0
1 TraesCS3B01G399000 chr3B 100.000 28 0 0 1426 1453 822592877 822592904 7.000000e-03 52.8
2 TraesCS3B01G399000 chr3A 96.348 3313 81 17 721 4016 616279481 616282770 0.000000e+00 5411.0
3 TraesCS3B01G399000 chr3D 94.248 3147 126 22 848 3975 473821591 473824701 0.000000e+00 4758.0
4 TraesCS3B01G399000 chr3D 97.727 88 2 0 4012 4099 526509384 526509297 7.160000e-33 152.0
5 TraesCS3B01G399000 chr3D 93.939 99 3 3 4015 4111 303788541 303788444 3.330000e-31 147.0
6 TraesCS3B01G399000 chr7D 89.733 487 48 1 1 487 269033885 269033401 4.540000e-174 621.0
7 TraesCS3B01G399000 chr7D 83.981 206 15 2 500 705 269032889 269032702 9.130000e-42 182.0
8 TraesCS3B01G399000 chr7D 83.981 206 12 6 500 705 269033273 269033089 1.180000e-40 178.0
9 TraesCS3B01G399000 chr7D 93.000 100 5 2 4012 4110 246397231 246397133 1.200000e-30 145.0
10 TraesCS3B01G399000 chr7D 92.473 93 5 2 4007 4099 510397752 510397842 9.330000e-27 132.0
11 TraesCS3B01G399000 chr5A 88.090 487 58 0 1 487 559063337 559063823 2.770000e-161 579.0
12 TraesCS3B01G399000 chr5A 89.706 136 12 2 1 135 24190515 24190381 5.500000e-39 172.0
13 TraesCS3B01G399000 chr5A 82.941 170 11 6 486 655 559063923 559064074 2.010000e-28 137.0
14 TraesCS3B01G399000 chr5A 95.238 84 4 0 486 569 24190041 24189958 2.590000e-27 134.0
15 TraesCS3B01G399000 chr2D 87.474 487 52 4 1 487 314042391 314041914 1.680000e-153 553.0
16 TraesCS3B01G399000 chr6B 89.390 377 22 1 333 709 202508647 202508289 3.770000e-125 459.0
17 TraesCS3B01G399000 chr6B 93.000 100 4 3 4000 4099 8403646 8403550 4.310000e-30 143.0
18 TraesCS3B01G399000 chr6B 100.000 40 0 0 1 40 202508693 202508654 1.590000e-09 75.0
19 TraesCS3B01G399000 chr2B 88.517 209 23 1 1 208 652819546 652819338 6.860000e-63 252.0
20 TraesCS3B01G399000 chr2B 88.776 196 22 0 292 487 652621399 652621204 1.490000e-59 241.0
21 TraesCS3B01G399000 chr2B 84.753 223 12 6 486 708 652621104 652620904 1.950000e-48 204.0
22 TraesCS3B01G399000 chr7A 95.699 93 4 0 4015 4107 467851822 467851914 2.580000e-32 150.0
23 TraesCS3B01G399000 chr5D 97.701 87 2 0 4014 4100 267846682 267846596 2.580000e-32 150.0
24 TraesCS3B01G399000 chr1A 97.647 85 2 0 4016 4100 590819663 590819579 3.330000e-31 147.0
25 TraesCS3B01G399000 chr1A 93.684 95 6 0 4015 4109 91047542 91047448 4.310000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G399000 chr3B 630296197 630300332 4135 False 7638 7638 100.000000 1 4136 1 chr3B.!!$F1 4135
1 TraesCS3B01G399000 chr3A 616279481 616282770 3289 False 5411 5411 96.348000 721 4016 1 chr3A.!!$F1 3295
2 TraesCS3B01G399000 chr3D 473821591 473824701 3110 False 4758 4758 94.248000 848 3975 1 chr3D.!!$F1 3127
3 TraesCS3B01G399000 chr7D 269032702 269033885 1183 True 327 621 85.898333 1 705 3 chr7D.!!$R2 704
4 TraesCS3B01G399000 chr5A 559063337 559064074 737 False 358 579 85.515500 1 655 2 chr5A.!!$F1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.028505 GAATACGAGCGGCTACGTGA 59.971 55.0 26.29 15.97 42.61 4.35 F
460 461 0.030369 ACCGCACGTCGATCTATTCC 59.970 55.0 0.00 0.00 41.67 3.01 F
480 481 0.032130 TAGACCATGAAGATCGCCGC 59.968 55.0 0.00 0.00 0.00 6.53 F
525 526 0.039035 ACCCAAATACCATGCCACGT 59.961 50.0 0.00 0.00 0.00 4.49 F
597 598 0.039618 GCAAAACCATCTGAGGGGGA 59.960 55.0 13.54 0.00 0.00 4.81 F
831 835 0.250338 GGCCCAGTCGTTTCAGAACT 60.250 55.0 0.00 0.00 33.51 3.01 F
934 943 0.314935 CTCACAAGCCAAACCGCAAT 59.685 50.0 0.00 0.00 0.00 3.56 F
1814 1827 0.539669 CCTGGTTCAAGTCCCAACCC 60.540 60.0 0.00 0.00 41.38 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1814 1.073319 TGGAGGGGTTGGGACTTGA 60.073 57.895 0.00 0.0 0.00 3.02 R
1814 1827 1.331756 GCATCGCATTGTAAGTGGAGG 59.668 52.381 0.00 0.0 0.00 4.30 R
2376 2402 1.957177 GCATCGTCTAGTCTCCCATCA 59.043 52.381 0.00 0.0 0.00 3.07 R
2622 2648 7.342026 AGTTTACAACCTTTCTCCAACATTTCT 59.658 33.333 0.00 0.0 0.00 2.52 R
2775 2801 5.774690 AGCAGAACAAAGACCATGGATTAAA 59.225 36.000 21.47 0.0 0.00 1.52 R
2820 2846 6.015856 TCTCTTTCATCTCAGAGAGAAAACGT 60.016 38.462 18.17 0.0 42.27 3.99 R
3084 3110 4.100189 ACAGCTCTGACCAGTATATTCCAC 59.900 45.833 3.60 0.0 0.00 4.02 R
3534 3576 2.571202 TGACCTGGTTACTGCATCATCA 59.429 45.455 0.00 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 2.887568 GCCCGAGCAGACGACATG 60.888 66.667 0.00 0.00 39.53 3.21
93 94 1.080501 CCGAGCAGACGACATGTGT 60.081 57.895 1.15 1.22 35.09 3.72
97 98 1.960763 GCAGACGACATGTGTGGCA 60.961 57.895 1.15 0.00 41.96 4.92
184 185 3.625897 CCATATCTCCCCGGCGCA 61.626 66.667 10.83 0.00 0.00 6.09
207 208 1.503818 GAAAACGAGGTTGCAGCCGA 61.504 55.000 14.49 0.00 0.00 5.54
229 230 2.357517 CCCGACGAACAAGCAGCT 60.358 61.111 0.00 0.00 0.00 4.24
231 232 2.171940 CGACGAACAAGCAGCTGC 59.828 61.111 31.53 31.53 42.49 5.25
249 250 4.101448 GCCCGCTGTCCATCACCT 62.101 66.667 0.00 0.00 0.00 4.00
250 251 2.124983 CCCGCTGTCCATCACCTG 60.125 66.667 0.00 0.00 0.00 4.00
251 252 2.821366 CCGCTGTCCATCACCTGC 60.821 66.667 0.00 0.00 0.00 4.85
252 253 3.190849 CGCTGTCCATCACCTGCG 61.191 66.667 0.00 0.00 39.47 5.18
253 254 2.046892 GCTGTCCATCACCTGCGT 60.047 61.111 0.00 0.00 0.00 5.24
254 255 1.672356 GCTGTCCATCACCTGCGTT 60.672 57.895 0.00 0.00 0.00 4.84
255 256 1.915614 GCTGTCCATCACCTGCGTTG 61.916 60.000 0.00 0.00 0.00 4.10
256 257 0.320683 CTGTCCATCACCTGCGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
257 258 0.320683 TGTCCATCACCTGCGTTGAG 60.321 55.000 0.00 0.00 0.00 3.02
268 269 2.360794 GCGTTGAGCGAGTAGAACC 58.639 57.895 0.00 0.00 44.77 3.62
269 270 1.077089 GCGTTGAGCGAGTAGAACCC 61.077 60.000 0.00 0.00 44.77 4.11
270 271 0.797249 CGTTGAGCGAGTAGAACCCG 60.797 60.000 0.00 0.00 44.77 5.28
274 275 2.278013 GCGAGTAGAACCCGCGAG 60.278 66.667 8.23 0.00 39.54 5.03
275 276 3.048941 GCGAGTAGAACCCGCGAGT 62.049 63.158 8.23 0.00 39.54 4.18
276 277 1.062206 CGAGTAGAACCCGCGAGTC 59.938 63.158 8.23 0.85 0.00 3.36
277 278 1.432657 GAGTAGAACCCGCGAGTCC 59.567 63.158 8.23 0.00 0.00 3.85
278 279 2.101770 GTAGAACCCGCGAGTCCG 59.898 66.667 8.23 0.00 39.16 4.79
288 289 2.264480 CGAGTCCGCCATCCAACA 59.736 61.111 0.00 0.00 0.00 3.33
289 290 2.100631 CGAGTCCGCCATCCAACAC 61.101 63.158 0.00 0.00 0.00 3.32
290 291 2.047274 AGTCCGCCATCCAACACG 60.047 61.111 0.00 0.00 0.00 4.49
291 292 3.124921 GTCCGCCATCCAACACGG 61.125 66.667 0.00 0.00 46.97 4.94
294 295 4.101790 CGCCATCCAACACGGCAC 62.102 66.667 0.00 0.00 46.60 5.01
317 318 3.772281 TTGCGGCCGGGTCGAATA 61.772 61.111 27.44 7.13 29.41 1.75
318 319 4.517815 TGCGGCCGGGTCGAATAC 62.518 66.667 27.44 7.39 29.41 1.89
320 321 3.891400 CGGCCGGGTCGAATACGA 61.891 66.667 17.68 0.00 46.56 3.43
329 330 1.277739 TCGAATACGAGCGGCTACG 59.722 57.895 0.60 11.21 43.81 3.51
330 331 1.010350 CGAATACGAGCGGCTACGT 60.010 57.895 23.44 23.44 44.72 3.57
331 332 1.260198 CGAATACGAGCGGCTACGTG 61.260 60.000 26.29 13.21 42.61 4.49
332 333 0.028505 GAATACGAGCGGCTACGTGA 59.971 55.000 26.29 15.97 42.61 4.35
333 334 0.452987 AATACGAGCGGCTACGTGAA 59.547 50.000 26.29 14.76 42.61 3.18
334 335 0.248377 ATACGAGCGGCTACGTGAAC 60.248 55.000 26.29 5.40 42.61 3.18
335 336 2.257286 TACGAGCGGCTACGTGAACC 62.257 60.000 26.29 4.77 42.61 3.62
336 337 2.508663 GAGCGGCTACGTGAACCC 60.509 66.667 0.60 0.00 43.45 4.11
337 338 4.078516 AGCGGCTACGTGAACCCC 62.079 66.667 0.00 0.00 43.45 4.95
338 339 4.382320 GCGGCTACGTGAACCCCA 62.382 66.667 0.00 0.00 43.45 4.96
339 340 2.433664 CGGCTACGTGAACCCCAC 60.434 66.667 0.00 0.00 42.30 4.61
346 347 2.048503 GTGAACCCCACGACGAGG 60.049 66.667 0.00 2.17 35.86 4.63
347 348 2.203523 TGAACCCCACGACGAGGA 60.204 61.111 13.31 0.00 0.00 3.71
348 349 1.608336 TGAACCCCACGACGAGGAT 60.608 57.895 13.31 0.00 0.00 3.24
349 350 1.153628 GAACCCCACGACGAGGATG 60.154 63.158 13.31 6.12 0.00 3.51
350 351 1.601419 GAACCCCACGACGAGGATGA 61.601 60.000 13.31 0.00 0.00 2.92
351 352 1.605058 AACCCCACGACGAGGATGAG 61.605 60.000 13.31 1.47 0.00 2.90
352 353 2.105128 CCCACGACGAGGATGAGC 59.895 66.667 13.31 0.00 0.00 4.26
353 354 2.105128 CCACGACGAGGATGAGCC 59.895 66.667 5.25 0.00 0.00 4.70
354 355 2.278206 CACGACGAGGATGAGCCG 60.278 66.667 0.00 0.00 43.43 5.52
355 356 4.194720 ACGACGAGGATGAGCCGC 62.195 66.667 0.00 0.00 43.43 6.53
356 357 4.933064 CGACGAGGATGAGCCGCC 62.933 72.222 0.00 0.00 43.43 6.13
357 358 3.532155 GACGAGGATGAGCCGCCT 61.532 66.667 0.00 0.00 43.43 5.52
358 359 2.123854 ACGAGGATGAGCCGCCTA 60.124 61.111 0.00 0.00 43.43 3.93
359 360 2.336809 CGAGGATGAGCCGCCTAC 59.663 66.667 0.00 0.00 43.43 3.18
360 361 2.737830 GAGGATGAGCCGCCTACC 59.262 66.667 0.00 0.00 43.43 3.18
361 362 1.834822 GAGGATGAGCCGCCTACCT 60.835 63.158 0.00 0.00 43.43 3.08
362 363 2.093537 GAGGATGAGCCGCCTACCTG 62.094 65.000 0.00 0.00 43.43 4.00
363 364 2.280457 GATGAGCCGCCTACCTGC 60.280 66.667 0.00 0.00 0.00 4.85
364 365 3.083349 ATGAGCCGCCTACCTGCA 61.083 61.111 0.00 0.00 0.00 4.41
365 366 2.985512 GATGAGCCGCCTACCTGCAG 62.986 65.000 6.78 6.78 0.00 4.41
370 371 4.393155 CGCCTACCTGCAGCCACA 62.393 66.667 8.66 0.00 0.00 4.17
371 372 2.437359 GCCTACCTGCAGCCACAG 60.437 66.667 8.66 1.68 37.42 3.66
372 373 2.959484 GCCTACCTGCAGCCACAGA 61.959 63.158 8.66 0.00 40.25 3.41
373 374 1.078848 CCTACCTGCAGCCACAGAC 60.079 63.158 8.66 0.00 40.25 3.51
374 375 1.078848 CTACCTGCAGCCACAGACC 60.079 63.158 8.66 0.00 40.25 3.85
375 376 1.830587 CTACCTGCAGCCACAGACCA 61.831 60.000 8.66 0.00 40.25 4.02
376 377 1.830587 TACCTGCAGCCACAGACCAG 61.831 60.000 8.66 0.00 40.25 4.00
377 378 2.745698 CTGCAGCCACAGACCAGA 59.254 61.111 0.00 0.00 40.25 3.86
378 379 1.375652 CTGCAGCCACAGACCAGAG 60.376 63.158 0.00 0.00 40.25 3.35
379 380 2.745492 GCAGCCACAGACCAGAGC 60.745 66.667 0.00 0.00 0.00 4.09
380 381 2.433838 CAGCCACAGACCAGAGCG 60.434 66.667 0.00 0.00 0.00 5.03
381 382 2.601666 AGCCACAGACCAGAGCGA 60.602 61.111 0.00 0.00 0.00 4.93
382 383 2.433318 GCCACAGACCAGAGCGAC 60.433 66.667 0.00 0.00 0.00 5.19
383 384 3.051210 CCACAGACCAGAGCGACA 58.949 61.111 0.00 0.00 0.00 4.35
384 385 1.367471 CCACAGACCAGAGCGACAA 59.633 57.895 0.00 0.00 0.00 3.18
385 386 0.946221 CCACAGACCAGAGCGACAAC 60.946 60.000 0.00 0.00 0.00 3.32
386 387 0.946221 CACAGACCAGAGCGACAACC 60.946 60.000 0.00 0.00 0.00 3.77
387 388 1.734477 CAGACCAGAGCGACAACCG 60.734 63.158 0.00 0.00 42.21 4.44
388 389 2.432628 GACCAGAGCGACAACCGG 60.433 66.667 0.00 0.00 39.04 5.28
395 396 3.998672 GCGACAACCGGTGGGAGA 61.999 66.667 15.05 0.00 39.04 3.71
396 397 2.261671 CGACAACCGGTGGGAGAG 59.738 66.667 15.05 0.00 36.97 3.20
397 398 2.663196 GACAACCGGTGGGAGAGG 59.337 66.667 15.05 0.00 36.97 3.69
398 399 1.911766 GACAACCGGTGGGAGAGGA 60.912 63.158 15.05 0.00 36.97 3.71
399 400 1.460689 ACAACCGGTGGGAGAGGAA 60.461 57.895 15.05 0.00 36.97 3.36
400 401 1.003718 CAACCGGTGGGAGAGGAAC 60.004 63.158 8.52 0.00 36.97 3.62
401 402 2.580601 AACCGGTGGGAGAGGAACG 61.581 63.158 8.52 0.00 36.97 3.95
402 403 2.678934 CCGGTGGGAGAGGAACGA 60.679 66.667 0.00 0.00 34.06 3.85
403 404 2.572284 CGGTGGGAGAGGAACGAC 59.428 66.667 0.00 0.00 0.00 4.34
404 405 2.273179 CGGTGGGAGAGGAACGACA 61.273 63.158 0.00 0.00 0.00 4.35
405 406 1.592223 GGTGGGAGAGGAACGACAG 59.408 63.158 0.00 0.00 0.00 3.51
406 407 1.592223 GTGGGAGAGGAACGACAGG 59.408 63.158 0.00 0.00 0.00 4.00
407 408 1.155390 TGGGAGAGGAACGACAGGT 59.845 57.895 0.00 0.00 0.00 4.00
408 409 1.185618 TGGGAGAGGAACGACAGGTG 61.186 60.000 0.00 0.00 0.00 4.00
409 410 1.592223 GGAGAGGAACGACAGGTGG 59.408 63.158 0.00 0.00 0.00 4.61
410 411 1.079750 GAGAGGAACGACAGGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
411 412 1.816863 GAGAGGAACGACAGGTGGCA 61.817 60.000 0.00 0.00 0.00 4.92
412 413 1.070786 GAGGAACGACAGGTGGCAA 59.929 57.895 0.00 0.00 0.00 4.52
413 414 0.534203 GAGGAACGACAGGTGGCAAA 60.534 55.000 0.00 0.00 0.00 3.68
414 415 0.535102 AGGAACGACAGGTGGCAAAG 60.535 55.000 0.00 0.00 0.00 2.77
415 416 1.282875 GAACGACAGGTGGCAAAGC 59.717 57.895 0.00 0.00 0.00 3.51
416 417 1.444119 GAACGACAGGTGGCAAAGCA 61.444 55.000 0.00 0.00 0.00 3.91
417 418 0.823356 AACGACAGGTGGCAAAGCAT 60.823 50.000 0.00 0.00 0.00 3.79
418 419 0.823356 ACGACAGGTGGCAAAGCATT 60.823 50.000 0.00 0.00 0.00 3.56
419 420 1.164411 CGACAGGTGGCAAAGCATTA 58.836 50.000 0.00 0.00 0.00 1.90
420 421 1.131126 CGACAGGTGGCAAAGCATTAG 59.869 52.381 0.00 0.00 0.00 1.73
421 422 1.474077 GACAGGTGGCAAAGCATTAGG 59.526 52.381 0.00 0.00 0.00 2.69
422 423 0.819582 CAGGTGGCAAAGCATTAGGG 59.180 55.000 0.00 0.00 0.00 3.53
423 424 0.324645 AGGTGGCAAAGCATTAGGGG 60.325 55.000 0.00 0.00 0.00 4.79
424 425 1.517361 GTGGCAAAGCATTAGGGGC 59.483 57.895 0.00 0.00 0.00 5.80
425 426 2.051518 TGGCAAAGCATTAGGGGCG 61.052 57.895 0.00 0.00 36.08 6.13
426 427 2.104928 GCAAAGCATTAGGGGCGC 59.895 61.111 0.00 0.00 36.08 6.53
427 428 2.807622 CAAAGCATTAGGGGCGCC 59.192 61.111 21.18 21.18 36.08 6.53
428 429 2.828549 AAAGCATTAGGGGCGCCG 60.829 61.111 22.54 6.34 36.08 6.46
429 430 4.875713 AAGCATTAGGGGCGCCGG 62.876 66.667 22.54 0.00 36.08 6.13
453 454 4.430765 GTCCCACCGCACGTCGAT 62.431 66.667 0.00 0.00 41.67 3.59
454 455 4.124351 TCCCACCGCACGTCGATC 62.124 66.667 0.00 0.00 41.67 3.69
455 456 4.129737 CCCACCGCACGTCGATCT 62.130 66.667 0.00 0.00 41.67 2.75
456 457 2.767445 CCCACCGCACGTCGATCTA 61.767 63.158 0.00 0.00 41.67 1.98
457 458 1.359117 CCACCGCACGTCGATCTAT 59.641 57.895 0.00 0.00 41.67 1.98
458 459 0.248907 CCACCGCACGTCGATCTATT 60.249 55.000 0.00 0.00 41.67 1.73
459 460 1.121240 CACCGCACGTCGATCTATTC 58.879 55.000 0.00 0.00 41.67 1.75
460 461 0.030369 ACCGCACGTCGATCTATTCC 59.970 55.000 0.00 0.00 41.67 3.01
461 462 0.311165 CCGCACGTCGATCTATTCCT 59.689 55.000 0.00 0.00 41.67 3.36
462 463 1.534163 CCGCACGTCGATCTATTCCTA 59.466 52.381 0.00 0.00 41.67 2.94
463 464 2.412977 CCGCACGTCGATCTATTCCTAG 60.413 54.545 0.00 0.00 41.67 3.02
464 465 2.479275 CGCACGTCGATCTATTCCTAGA 59.521 50.000 0.00 0.00 41.67 2.43
465 466 3.664798 CGCACGTCGATCTATTCCTAGAC 60.665 52.174 0.00 0.00 41.67 2.59
466 467 3.365164 GCACGTCGATCTATTCCTAGACC 60.365 52.174 0.00 0.00 36.81 3.85
467 468 3.813724 CACGTCGATCTATTCCTAGACCA 59.186 47.826 0.00 0.00 36.81 4.02
468 469 4.456222 CACGTCGATCTATTCCTAGACCAT 59.544 45.833 0.00 0.00 36.81 3.55
469 470 4.456222 ACGTCGATCTATTCCTAGACCATG 59.544 45.833 0.00 0.00 36.81 3.66
470 471 4.695928 CGTCGATCTATTCCTAGACCATGA 59.304 45.833 0.00 0.00 36.81 3.07
471 472 5.181433 CGTCGATCTATTCCTAGACCATGAA 59.819 44.000 0.00 0.00 36.81 2.57
472 473 6.616947 GTCGATCTATTCCTAGACCATGAAG 58.383 44.000 0.00 0.00 36.81 3.02
473 474 6.431543 GTCGATCTATTCCTAGACCATGAAGA 59.568 42.308 0.00 0.00 36.81 2.87
474 475 7.122055 GTCGATCTATTCCTAGACCATGAAGAT 59.878 40.741 0.00 0.00 36.81 2.40
475 476 7.338196 TCGATCTATTCCTAGACCATGAAGATC 59.662 40.741 0.00 0.00 36.81 2.75
476 477 6.825944 TCTATTCCTAGACCATGAAGATCG 57.174 41.667 0.00 0.00 0.00 3.69
477 478 3.735237 TTCCTAGACCATGAAGATCGC 57.265 47.619 0.00 0.00 0.00 4.58
478 479 1.964223 TCCTAGACCATGAAGATCGCC 59.036 52.381 0.00 0.00 0.00 5.54
479 480 1.336332 CCTAGACCATGAAGATCGCCG 60.336 57.143 0.00 0.00 0.00 6.46
480 481 0.032130 TAGACCATGAAGATCGCCGC 59.968 55.000 0.00 0.00 0.00 6.53
481 482 2.203070 ACCATGAAGATCGCCGCC 60.203 61.111 0.00 0.00 0.00 6.13
482 483 3.341043 CCATGAAGATCGCCGCCG 61.341 66.667 0.00 0.00 0.00 6.46
483 484 2.586079 CATGAAGATCGCCGCCGT 60.586 61.111 0.00 0.00 35.54 5.68
484 485 2.279517 ATGAAGATCGCCGCCGTC 60.280 61.111 0.00 0.00 35.54 4.79
485 486 4.847516 TGAAGATCGCCGCCGTCG 62.848 66.667 0.00 0.00 35.54 5.12
489 490 4.918129 GATCGCCGCCGTCGCTAA 62.918 66.667 0.00 0.00 35.54 3.09
492 493 4.541482 CGCCGCCGTCGCTAACTA 62.541 66.667 0.00 0.00 0.00 2.24
493 494 2.027169 GCCGCCGTCGCTAACTAT 59.973 61.111 0.00 0.00 0.00 2.12
494 495 2.015090 GCCGCCGTCGCTAACTATC 61.015 63.158 0.00 0.00 0.00 2.08
495 496 1.653115 CCGCCGTCGCTAACTATCT 59.347 57.895 0.00 0.00 0.00 1.98
496 497 0.870393 CCGCCGTCGCTAACTATCTA 59.130 55.000 0.00 0.00 0.00 1.98
497 498 1.467734 CCGCCGTCGCTAACTATCTAT 59.532 52.381 0.00 0.00 0.00 1.98
498 499 2.506865 CGCCGTCGCTAACTATCTATG 58.493 52.381 0.00 0.00 0.00 2.23
499 500 2.095869 CGCCGTCGCTAACTATCTATGT 60.096 50.000 0.00 0.00 0.00 2.29
500 501 3.490399 GCCGTCGCTAACTATCTATGTC 58.510 50.000 0.00 0.00 0.00 3.06
501 502 3.188873 GCCGTCGCTAACTATCTATGTCT 59.811 47.826 0.00 0.00 0.00 3.41
502 503 4.713806 CCGTCGCTAACTATCTATGTCTG 58.286 47.826 0.00 0.00 0.00 3.51
503 504 4.152526 CGTCGCTAACTATCTATGTCTGC 58.847 47.826 0.00 0.00 0.00 4.26
504 505 4.319549 CGTCGCTAACTATCTATGTCTGCA 60.320 45.833 0.00 0.00 0.00 4.41
505 506 4.912766 GTCGCTAACTATCTATGTCTGCAC 59.087 45.833 0.00 0.00 0.00 4.57
506 507 4.578928 TCGCTAACTATCTATGTCTGCACA 59.421 41.667 0.00 0.00 36.78 4.57
507 508 4.677378 CGCTAACTATCTATGTCTGCACAC 59.323 45.833 0.00 0.00 34.48 3.82
508 509 4.985409 GCTAACTATCTATGTCTGCACACC 59.015 45.833 0.00 0.00 34.48 4.16
509 510 4.408182 AACTATCTATGTCTGCACACCC 57.592 45.455 0.00 0.00 34.48 4.61
510 511 3.374764 ACTATCTATGTCTGCACACCCA 58.625 45.455 0.00 0.00 34.48 4.51
511 512 3.774766 ACTATCTATGTCTGCACACCCAA 59.225 43.478 0.00 0.00 34.48 4.12
512 513 3.719268 ATCTATGTCTGCACACCCAAA 57.281 42.857 0.00 0.00 34.48 3.28
513 514 3.719268 TCTATGTCTGCACACCCAAAT 57.281 42.857 0.00 0.00 34.48 2.32
514 515 4.835284 TCTATGTCTGCACACCCAAATA 57.165 40.909 0.00 0.00 34.48 1.40
515 516 4.513442 TCTATGTCTGCACACCCAAATAC 58.487 43.478 0.00 0.00 34.48 1.89
516 517 1.904287 TGTCTGCACACCCAAATACC 58.096 50.000 0.00 0.00 0.00 2.73
517 518 1.143889 TGTCTGCACACCCAAATACCA 59.856 47.619 0.00 0.00 0.00 3.25
518 519 2.224992 TGTCTGCACACCCAAATACCAT 60.225 45.455 0.00 0.00 0.00 3.55
519 520 2.164219 GTCTGCACACCCAAATACCATG 59.836 50.000 0.00 0.00 0.00 3.66
520 521 0.894141 TGCACACCCAAATACCATGC 59.106 50.000 0.00 0.00 0.00 4.06
521 522 0.175531 GCACACCCAAATACCATGCC 59.824 55.000 0.00 0.00 0.00 4.40
522 523 1.554836 CACACCCAAATACCATGCCA 58.445 50.000 0.00 0.00 0.00 4.92
523 524 1.204467 CACACCCAAATACCATGCCAC 59.796 52.381 0.00 0.00 0.00 5.01
524 525 0.455410 CACCCAAATACCATGCCACG 59.545 55.000 0.00 0.00 0.00 4.94
525 526 0.039035 ACCCAAATACCATGCCACGT 59.961 50.000 0.00 0.00 0.00 4.49
526 527 0.738389 CCCAAATACCATGCCACGTC 59.262 55.000 0.00 0.00 0.00 4.34
527 528 1.458398 CCAAATACCATGCCACGTCA 58.542 50.000 0.00 0.00 0.00 4.35
528 529 1.132262 CCAAATACCATGCCACGTCAC 59.868 52.381 0.00 0.00 0.00 3.67
529 530 1.809547 CAAATACCATGCCACGTCACA 59.190 47.619 0.00 0.00 0.00 3.58
530 531 1.448985 AATACCATGCCACGTCACAC 58.551 50.000 0.00 0.00 0.00 3.82
531 532 0.613260 ATACCATGCCACGTCACACT 59.387 50.000 0.00 0.00 0.00 3.55
532 533 0.394938 TACCATGCCACGTCACACTT 59.605 50.000 0.00 0.00 0.00 3.16
533 534 0.884704 ACCATGCCACGTCACACTTC 60.885 55.000 0.00 0.00 0.00 3.01
534 535 0.603707 CCATGCCACGTCACACTTCT 60.604 55.000 0.00 0.00 0.00 2.85
535 536 0.514255 CATGCCACGTCACACTTCTG 59.486 55.000 0.00 0.00 0.00 3.02
536 537 0.603707 ATGCCACGTCACACTTCTGG 60.604 55.000 0.00 0.00 0.00 3.86
537 538 2.607892 GCCACGTCACACTTCTGGC 61.608 63.158 0.00 0.00 40.68 4.85
538 539 1.961277 CCACGTCACACTTCTGGCC 60.961 63.158 0.00 0.00 0.00 5.36
539 540 1.227527 CACGTCACACTTCTGGCCA 60.228 57.895 4.71 4.71 0.00 5.36
540 541 1.227556 ACGTCACACTTCTGGCCAC 60.228 57.895 0.00 0.00 0.00 5.01
541 542 1.227527 CGTCACACTTCTGGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
542 543 1.224069 CGTCACACTTCTGGCCACAG 61.224 60.000 0.00 2.94 46.30 3.66
551 552 2.925706 TGGCCACAGAACCGCCTA 60.926 61.111 0.00 0.00 43.42 3.93
552 553 2.349755 GGCCACAGAACCGCCTAA 59.650 61.111 0.00 0.00 39.70 2.69
553 554 1.302993 GGCCACAGAACCGCCTAAA 60.303 57.895 0.00 0.00 39.70 1.85
554 555 0.891904 GGCCACAGAACCGCCTAAAA 60.892 55.000 0.00 0.00 39.70 1.52
555 556 1.173913 GCCACAGAACCGCCTAAAAT 58.826 50.000 0.00 0.00 0.00 1.82
556 557 1.544246 GCCACAGAACCGCCTAAAATT 59.456 47.619 0.00 0.00 0.00 1.82
557 558 2.671070 GCCACAGAACCGCCTAAAATTG 60.671 50.000 0.00 0.00 0.00 2.32
558 559 2.817258 CCACAGAACCGCCTAAAATTGA 59.183 45.455 0.00 0.00 0.00 2.57
559 560 3.119849 CCACAGAACCGCCTAAAATTGAG 60.120 47.826 0.00 0.00 0.00 3.02
560 561 3.081804 ACAGAACCGCCTAAAATTGAGG 58.918 45.455 0.00 0.00 37.12 3.86
571 572 6.934048 CCTAAAATTGAGGCAAAACCAAAA 57.066 33.333 0.00 0.00 43.14 2.44
572 573 7.326968 CCTAAAATTGAGGCAAAACCAAAAA 57.673 32.000 0.00 0.00 43.14 1.94
573 574 7.939782 CCTAAAATTGAGGCAAAACCAAAAAT 58.060 30.769 0.00 0.00 43.14 1.82
574 575 8.412456 CCTAAAATTGAGGCAAAACCAAAAATT 58.588 29.630 0.00 0.00 43.14 1.82
575 576 9.235537 CTAAAATTGAGGCAAAACCAAAAATTG 57.764 29.630 0.00 0.00 43.14 2.32
576 577 7.401955 AAATTGAGGCAAAACCAAAAATTGA 57.598 28.000 0.00 0.00 43.14 2.57
577 578 6.622833 ATTGAGGCAAAACCAAAAATTGAG 57.377 33.333 0.00 0.00 43.14 3.02
578 579 4.450053 TGAGGCAAAACCAAAAATTGAGG 58.550 39.130 0.00 0.00 43.14 3.86
579 580 3.213506 AGGCAAAACCAAAAATTGAGGC 58.786 40.909 0.00 0.00 43.14 4.70
580 581 2.948315 GGCAAAACCAAAAATTGAGGCA 59.052 40.909 0.00 0.00 38.86 4.75
581 582 3.379688 GGCAAAACCAAAAATTGAGGCAA 59.620 39.130 0.00 0.00 38.86 4.52
582 583 4.142293 GGCAAAACCAAAAATTGAGGCAAA 60.142 37.500 0.00 0.00 38.86 3.68
583 584 5.405797 GCAAAACCAAAAATTGAGGCAAAA 58.594 33.333 0.00 0.00 0.00 2.44
584 585 5.288232 GCAAAACCAAAAATTGAGGCAAAAC 59.712 36.000 0.00 0.00 0.00 2.43
585 586 5.574891 AAACCAAAAATTGAGGCAAAACC 57.425 34.783 0.00 0.00 39.61 3.27
586 587 4.227864 ACCAAAAATTGAGGCAAAACCA 57.772 36.364 0.00 0.00 43.14 3.67
587 588 4.790937 ACCAAAAATTGAGGCAAAACCAT 58.209 34.783 0.00 0.00 43.14 3.55
588 589 4.821260 ACCAAAAATTGAGGCAAAACCATC 59.179 37.500 0.00 0.00 43.14 3.51
589 590 5.065235 CCAAAAATTGAGGCAAAACCATCT 58.935 37.500 0.00 0.00 43.14 2.90
590 591 5.049267 CCAAAAATTGAGGCAAAACCATCTG 60.049 40.000 0.00 0.00 43.14 2.90
591 592 5.549742 AAAATTGAGGCAAAACCATCTGA 57.450 34.783 0.00 0.00 43.14 3.27
592 593 4.796038 AATTGAGGCAAAACCATCTGAG 57.204 40.909 0.00 0.00 43.14 3.35
593 594 2.205022 TGAGGCAAAACCATCTGAGG 57.795 50.000 0.00 0.00 43.14 3.86
594 595 1.272092 TGAGGCAAAACCATCTGAGGG 60.272 52.381 6.84 6.84 43.14 4.30
595 596 0.040204 AGGCAAAACCATCTGAGGGG 59.960 55.000 13.54 4.98 43.14 4.79
596 597 0.972471 GGCAAAACCATCTGAGGGGG 60.972 60.000 13.54 2.38 38.86 5.40
597 598 0.039618 GCAAAACCATCTGAGGGGGA 59.960 55.000 13.54 0.00 0.00 4.81
598 599 1.957113 GCAAAACCATCTGAGGGGGAG 60.957 57.143 13.54 1.03 0.00 4.30
599 600 1.635487 CAAAACCATCTGAGGGGGAGA 59.365 52.381 13.54 0.00 0.00 3.71
600 601 2.243221 CAAAACCATCTGAGGGGGAGAT 59.757 50.000 13.54 0.00 0.00 2.75
601 602 2.293598 AACCATCTGAGGGGGAGATT 57.706 50.000 13.54 0.00 0.00 2.40
602 603 2.293598 ACCATCTGAGGGGGAGATTT 57.706 50.000 13.54 0.00 0.00 2.17
603 604 3.438131 ACCATCTGAGGGGGAGATTTA 57.562 47.619 13.54 0.00 0.00 1.40
604 605 3.049344 ACCATCTGAGGGGGAGATTTAC 58.951 50.000 13.54 0.00 0.00 2.01
605 606 2.373502 CCATCTGAGGGGGAGATTTACC 59.626 54.545 0.00 0.00 0.00 2.85
606 607 2.191981 TCTGAGGGGGAGATTTACCC 57.808 55.000 0.00 0.00 46.59 3.69
618 619 7.828508 GGGAGATTTACCCGGTTTTAATATT 57.171 36.000 0.00 0.00 37.85 1.28
619 620 8.241497 GGGAGATTTACCCGGTTTTAATATTT 57.759 34.615 0.00 0.00 37.85 1.40
620 621 8.698210 GGGAGATTTACCCGGTTTTAATATTTT 58.302 33.333 0.00 0.00 37.85 1.82
621 622 9.524106 GGAGATTTACCCGGTTTTAATATTTTG 57.476 33.333 0.00 0.00 0.00 2.44
622 623 9.524106 GAGATTTACCCGGTTTTAATATTTTGG 57.476 33.333 0.00 0.00 0.00 3.28
623 624 8.479689 AGATTTACCCGGTTTTAATATTTTGGG 58.520 33.333 0.00 0.00 41.29 4.12
624 625 6.541934 TTACCCGGTTTTAATATTTTGGGG 57.458 37.500 0.00 0.00 39.79 4.96
625 626 3.775866 ACCCGGTTTTAATATTTTGGGGG 59.224 43.478 0.00 0.69 39.79 5.40
626 627 3.775866 CCCGGTTTTAATATTTTGGGGGT 59.224 43.478 0.00 0.00 0.00 4.95
627 628 4.225492 CCCGGTTTTAATATTTTGGGGGTT 59.775 41.667 0.00 0.00 0.00 4.11
628 629 5.424573 CCCGGTTTTAATATTTTGGGGGTTA 59.575 40.000 0.00 0.00 0.00 2.85
629 630 6.070366 CCCGGTTTTAATATTTTGGGGGTTAA 60.070 38.462 0.00 0.00 0.00 2.01
630 631 7.392418 CCGGTTTTAATATTTTGGGGGTTAAA 58.608 34.615 0.00 0.00 0.00 1.52
631 632 7.881751 CCGGTTTTAATATTTTGGGGGTTAAAA 59.118 33.333 0.00 0.00 34.01 1.52
632 633 9.451002 CGGTTTTAATATTTTGGGGGTTAAAAT 57.549 29.630 0.00 0.00 40.00 1.82
638 639 5.664294 ATTTTGGGGGTTAAAATCGTACC 57.336 39.130 0.00 0.00 33.70 3.34
639 640 3.803186 TTGGGGGTTAAAATCGTACCA 57.197 42.857 0.00 0.00 33.51 3.25
640 641 3.803186 TGGGGGTTAAAATCGTACCAA 57.197 42.857 0.00 0.00 33.51 3.67
641 642 4.109877 TGGGGGTTAAAATCGTACCAAA 57.890 40.909 0.00 0.00 33.51 3.28
642 643 4.675038 TGGGGGTTAAAATCGTACCAAAT 58.325 39.130 0.00 0.00 33.51 2.32
643 644 5.085219 TGGGGGTTAAAATCGTACCAAATT 58.915 37.500 0.00 0.00 33.51 1.82
644 645 5.543020 TGGGGGTTAAAATCGTACCAAATTT 59.457 36.000 0.00 0.00 33.51 1.82
645 646 5.870433 GGGGGTTAAAATCGTACCAAATTTG 59.130 40.000 11.40 11.40 33.51 2.32
646 647 6.295180 GGGGGTTAAAATCGTACCAAATTTGA 60.295 38.462 19.86 0.00 33.51 2.69
647 648 6.809689 GGGGTTAAAATCGTACCAAATTTGAG 59.190 38.462 19.86 11.74 33.51 3.02
648 649 7.372714 GGGTTAAAATCGTACCAAATTTGAGT 58.627 34.615 19.86 16.50 33.51 3.41
649 650 7.868922 GGGTTAAAATCGTACCAAATTTGAGTT 59.131 33.333 19.86 6.01 33.51 3.01
650 651 8.908678 GGTTAAAATCGTACCAAATTTGAGTTC 58.091 33.333 19.86 11.74 32.12 3.01
651 652 9.453325 GTTAAAATCGTACCAAATTTGAGTTCA 57.547 29.630 19.86 0.98 0.00 3.18
652 653 9.672086 TTAAAATCGTACCAAATTTGAGTTCAG 57.328 29.630 19.86 4.15 0.00 3.02
653 654 5.880054 ATCGTACCAAATTTGAGTTCAGG 57.120 39.130 19.86 3.36 0.00 3.86
654 655 4.069304 TCGTACCAAATTTGAGTTCAGGG 58.931 43.478 19.86 2.60 0.00 4.45
655 656 4.069304 CGTACCAAATTTGAGTTCAGGGA 58.931 43.478 19.86 0.00 0.00 4.20
656 657 4.154195 CGTACCAAATTTGAGTTCAGGGAG 59.846 45.833 19.86 1.28 0.00 4.30
657 658 3.500343 ACCAAATTTGAGTTCAGGGAGG 58.500 45.455 19.86 0.59 0.00 4.30
658 659 3.117131 ACCAAATTTGAGTTCAGGGAGGT 60.117 43.478 19.86 1.24 0.00 3.85
659 660 4.105697 ACCAAATTTGAGTTCAGGGAGGTA 59.894 41.667 19.86 0.00 0.00 3.08
660 661 5.222337 ACCAAATTTGAGTTCAGGGAGGTAT 60.222 40.000 19.86 0.00 0.00 2.73
661 662 5.716703 CCAAATTTGAGTTCAGGGAGGTATT 59.283 40.000 19.86 0.00 0.00 1.89
662 663 6.211384 CCAAATTTGAGTTCAGGGAGGTATTT 59.789 38.462 19.86 0.00 0.00 1.40
663 664 6.840780 AATTTGAGTTCAGGGAGGTATTTG 57.159 37.500 0.00 0.00 0.00 2.32
664 665 4.993705 TTGAGTTCAGGGAGGTATTTGT 57.006 40.909 0.00 0.00 0.00 2.83
665 666 4.553330 TGAGTTCAGGGAGGTATTTGTC 57.447 45.455 0.00 0.00 0.00 3.18
666 667 3.263425 TGAGTTCAGGGAGGTATTTGTCC 59.737 47.826 0.00 0.00 0.00 4.02
673 674 2.644676 GGAGGTATTTGTCCCTCAAGC 58.355 52.381 7.89 0.00 37.35 4.01
674 675 2.239907 GGAGGTATTTGTCCCTCAAGCT 59.760 50.000 7.89 0.00 37.35 3.74
675 676 3.454812 GGAGGTATTTGTCCCTCAAGCTA 59.545 47.826 7.89 0.00 37.35 3.32
676 677 4.443621 GAGGTATTTGTCCCTCAAGCTAC 58.556 47.826 0.00 0.00 37.35 3.58
677 678 3.844211 AGGTATTTGTCCCTCAAGCTACA 59.156 43.478 0.00 0.00 37.35 2.74
678 679 4.475016 AGGTATTTGTCCCTCAAGCTACAT 59.525 41.667 0.00 0.00 37.35 2.29
679 680 5.044846 AGGTATTTGTCCCTCAAGCTACATT 60.045 40.000 0.00 0.00 37.35 2.71
680 681 5.652452 GGTATTTGTCCCTCAAGCTACATTT 59.348 40.000 0.00 0.00 37.35 2.32
681 682 6.152831 GGTATTTGTCCCTCAAGCTACATTTT 59.847 38.462 0.00 0.00 37.35 1.82
682 683 5.452078 TTTGTCCCTCAAGCTACATTTTG 57.548 39.130 0.00 0.00 37.35 2.44
683 684 3.420893 TGTCCCTCAAGCTACATTTTGG 58.579 45.455 0.00 0.00 0.00 3.28
684 685 2.755103 GTCCCTCAAGCTACATTTTGGG 59.245 50.000 0.00 0.00 34.98 4.12
685 686 2.102578 CCCTCAAGCTACATTTTGGGG 58.897 52.381 0.00 0.00 43.25 4.96
686 687 2.557452 CCCTCAAGCTACATTTTGGGGT 60.557 50.000 0.00 0.00 42.29 4.95
687 688 2.493278 CCTCAAGCTACATTTTGGGGTG 59.507 50.000 0.00 0.00 39.59 4.61
688 689 3.420893 CTCAAGCTACATTTTGGGGTGA 58.579 45.455 0.00 0.00 0.00 4.02
689 690 3.826157 CTCAAGCTACATTTTGGGGTGAA 59.174 43.478 0.00 0.00 0.00 3.18
690 691 4.219115 TCAAGCTACATTTTGGGGTGAAA 58.781 39.130 0.00 0.00 0.00 2.69
691 692 4.651503 TCAAGCTACATTTTGGGGTGAAAA 59.348 37.500 0.00 0.00 0.00 2.29
692 693 5.129485 TCAAGCTACATTTTGGGGTGAAAAA 59.871 36.000 0.00 0.00 0.00 1.94
693 694 4.956085 AGCTACATTTTGGGGTGAAAAAC 58.044 39.130 0.00 0.00 29.78 2.43
694 695 3.738791 GCTACATTTTGGGGTGAAAAACG 59.261 43.478 0.00 0.00 29.78 3.60
695 696 3.186702 ACATTTTGGGGTGAAAAACGG 57.813 42.857 0.00 0.00 29.78 4.44
696 697 2.766828 ACATTTTGGGGTGAAAAACGGA 59.233 40.909 0.00 0.00 29.78 4.69
697 698 2.963548 TTTTGGGGTGAAAAACGGAC 57.036 45.000 0.00 0.00 0.00 4.79
698 699 2.146920 TTTGGGGTGAAAAACGGACT 57.853 45.000 0.00 0.00 0.00 3.85
699 700 2.146920 TTGGGGTGAAAAACGGACTT 57.853 45.000 0.00 0.00 0.00 3.01
700 701 1.682740 TGGGGTGAAAAACGGACTTC 58.317 50.000 0.00 0.00 0.00 3.01
701 702 1.213430 TGGGGTGAAAAACGGACTTCT 59.787 47.619 0.00 0.00 0.00 2.85
702 703 2.304092 GGGGTGAAAAACGGACTTCTT 58.696 47.619 0.00 0.00 0.00 2.52
703 704 2.691526 GGGGTGAAAAACGGACTTCTTT 59.308 45.455 0.00 0.00 0.00 2.52
704 705 3.243301 GGGGTGAAAAACGGACTTCTTTC 60.243 47.826 0.00 0.00 0.00 2.62
705 706 3.630769 GGGTGAAAAACGGACTTCTTTCT 59.369 43.478 0.00 0.00 0.00 2.52
706 707 4.097437 GGGTGAAAAACGGACTTCTTTCTT 59.903 41.667 0.00 0.00 0.00 2.52
707 708 5.393787 GGGTGAAAAACGGACTTCTTTCTTT 60.394 40.000 0.00 0.00 0.00 2.52
708 709 6.183360 GGGTGAAAAACGGACTTCTTTCTTTA 60.183 38.462 0.00 0.00 0.00 1.85
709 710 7.252708 GGTGAAAAACGGACTTCTTTCTTTAA 58.747 34.615 0.00 0.00 0.00 1.52
710 711 7.756272 GGTGAAAAACGGACTTCTTTCTTTAAA 59.244 33.333 0.00 0.00 0.00 1.52
711 712 9.131416 GTGAAAAACGGACTTCTTTCTTTAAAA 57.869 29.630 0.00 0.00 0.00 1.52
712 713 9.694137 TGAAAAACGGACTTCTTTCTTTAAAAA 57.306 25.926 0.00 0.00 0.00 1.94
760 761 2.126502 GCACCATTTCCGCCAACG 60.127 61.111 0.00 0.00 39.67 4.10
790 794 3.321111 CCTTGCGGCTAGATTAGTTAGGA 59.679 47.826 13.02 0.00 0.00 2.94
791 795 4.202223 CCTTGCGGCTAGATTAGTTAGGAA 60.202 45.833 13.02 0.00 0.00 3.36
792 796 4.585955 TGCGGCTAGATTAGTTAGGAAG 57.414 45.455 0.00 0.00 0.00 3.46
793 797 3.243771 TGCGGCTAGATTAGTTAGGAAGC 60.244 47.826 0.00 0.00 0.00 3.86
799 803 5.935206 GCTAGATTAGTTAGGAAGCCCATTC 59.065 44.000 0.00 0.00 37.17 2.67
831 835 0.250338 GGCCCAGTCGTTTCAGAACT 60.250 55.000 0.00 0.00 33.51 3.01
834 838 2.143925 CCCAGTCGTTTCAGAACTTCC 58.856 52.381 0.00 0.00 33.51 3.46
835 839 2.143925 CCAGTCGTTTCAGAACTTCCC 58.856 52.381 0.00 0.00 33.51 3.97
851 855 2.354729 CCCCCGACATTCTTGGCA 59.645 61.111 0.00 0.00 0.00 4.92
934 943 0.314935 CTCACAAGCCAAACCGCAAT 59.685 50.000 0.00 0.00 0.00 3.56
1573 1586 2.538437 CTCTGATGCTCTTTGACTCCG 58.462 52.381 0.00 0.00 0.00 4.63
1704 1717 1.842562 ACCTATGAAGTGCAGCCTGAT 59.157 47.619 0.00 0.00 0.00 2.90
1752 1765 2.162681 GGGTGTTTCAGGAATGGTGAG 58.837 52.381 0.00 0.00 0.00 3.51
1801 1814 0.908198 GCTGGTGAGAGATCCTGGTT 59.092 55.000 0.00 0.00 0.00 3.67
1814 1827 0.539669 CCTGGTTCAAGTCCCAACCC 60.540 60.000 0.00 0.00 41.38 4.11
2376 2402 3.949754 CCATGATAAGTGGACTGTGCAAT 59.050 43.478 2.79 0.00 39.12 3.56
2622 2648 6.804677 TCAAGATGCTTCAAGCTTTACAAAA 58.195 32.000 11.57 0.00 42.97 2.44
2775 2801 4.676986 GCAGATGTCATGATGCACAACATT 60.677 41.667 12.97 0.00 39.84 2.71
2820 2846 4.836825 CTGGGAAAGTAGATGAAGCTTCA 58.163 43.478 30.23 30.23 42.14 3.02
2824 2850 4.691216 GGAAAGTAGATGAAGCTTCACGTT 59.309 41.667 30.66 20.68 40.49 3.99
3084 3110 1.518325 TTGTACCAACAGCCATCACG 58.482 50.000 0.00 0.00 36.83 4.35
3348 3374 9.166173 TGATGTTTAGAATTTCAGTGATACCAG 57.834 33.333 0.00 0.00 0.00 4.00
3533 3575 5.279708 CCTTGCCTGTCTCTTCTTTCTTCTA 60.280 44.000 0.00 0.00 0.00 2.10
3534 3576 6.365970 TTGCCTGTCTCTTCTTTCTTCTAT 57.634 37.500 0.00 0.00 0.00 1.98
3535 3577 5.728471 TGCCTGTCTCTTCTTTCTTCTATG 58.272 41.667 0.00 0.00 0.00 2.23
3570 3613 6.930068 ACCAGGTCAAGTACAATAGTAACT 57.070 37.500 0.00 0.00 30.67 2.24
3571 3614 6.698380 ACCAGGTCAAGTACAATAGTAACTG 58.302 40.000 0.00 0.00 30.67 3.16
3572 3615 6.495872 ACCAGGTCAAGTACAATAGTAACTGA 59.504 38.462 0.00 0.00 30.67 3.41
3573 3616 7.180408 ACCAGGTCAAGTACAATAGTAACTGAT 59.820 37.037 0.00 0.00 30.35 2.90
3574 3617 7.492669 CCAGGTCAAGTACAATAGTAACTGATG 59.507 40.741 0.00 0.00 30.35 3.07
3575 3618 8.251026 CAGGTCAAGTACAATAGTAACTGATGA 58.749 37.037 0.00 0.00 30.35 2.92
3576 3619 8.982723 AGGTCAAGTACAATAGTAACTGATGAT 58.017 33.333 0.00 0.00 30.35 2.45
3601 3645 8.450578 TCTAAGTGGGCTTACAATATTGATTG 57.549 34.615 22.16 11.21 40.79 2.67
3670 3714 7.397476 TGATAAGAGTTGAGAAGTGACCATAGT 59.603 37.037 0.00 0.00 0.00 2.12
3671 3715 8.824756 ATAAGAGTTGAGAAGTGACCATAGTA 57.175 34.615 0.00 0.00 0.00 1.82
3680 3725 9.588096 TGAGAAGTGACCATAGTATACATACAT 57.412 33.333 5.50 0.00 35.74 2.29
3720 3765 5.006386 CCAAACTCCTACAGCTTGAGAAAT 58.994 41.667 6.38 0.00 30.67 2.17
3896 3947 6.808008 TTTTTATCTTCTCAGCTTCAGTGG 57.192 37.500 0.00 0.00 0.00 4.00
3897 3948 5.489792 TTTATCTTCTCAGCTTCAGTGGT 57.510 39.130 0.00 0.00 0.00 4.16
3898 3949 3.608316 ATCTTCTCAGCTTCAGTGGTC 57.392 47.619 0.00 0.00 0.00 4.02
4005 4056 1.688735 CATTACCCTCGAGGCATCTCA 59.311 52.381 26.87 6.22 39.95 3.27
4016 4067 3.986572 CGAGGCATCTCAATGACATCTAC 59.013 47.826 0.00 0.00 44.06 2.59
4017 4068 4.261952 CGAGGCATCTCAATGACATCTACT 60.262 45.833 0.00 0.00 44.06 2.57
4021 4072 4.040217 GCATCTCAATGACATCTACTCCCT 59.960 45.833 0.00 0.00 34.61 4.20
4022 4073 5.782047 CATCTCAATGACATCTACTCCCTC 58.218 45.833 0.00 0.00 34.61 4.30
4023 4074 4.219115 TCTCAATGACATCTACTCCCTCC 58.781 47.826 0.00 0.00 0.00 4.30
4025 4076 4.560739 TCAATGACATCTACTCCCTCCAT 58.439 43.478 0.00 0.00 0.00 3.41
4027 4078 2.964209 TGACATCTACTCCCTCCATCC 58.036 52.381 0.00 0.00 0.00 3.51
4029 4464 1.580658 ACATCTACTCCCTCCATCCCA 59.419 52.381 0.00 0.00 0.00 4.37
4033 4468 4.785173 TCTACTCCCTCCATCCCATAAT 57.215 45.455 0.00 0.00 0.00 1.28
4036 4471 7.554597 TCTACTCCCTCCATCCCATAATATA 57.445 40.000 0.00 0.00 0.00 0.86
4037 4472 7.961940 TCTACTCCCTCCATCCCATAATATAA 58.038 38.462 0.00 0.00 0.00 0.98
4038 4473 8.068110 TCTACTCCCTCCATCCCATAATATAAG 58.932 40.741 0.00 0.00 0.00 1.73
4042 4477 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
4043 4478 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
4044 4479 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
4045 4480 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
4046 4481 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
4047 4482 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
4048 4483 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
4049 4484 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
4051 4486 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4052 4487 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4053 4488 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4056 4491 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4057 4492 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4058 4493 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4061 4496 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4087 4522 8.794553 TGTTAAAAACGCTCTTATATTTTGGGA 58.205 29.630 0.00 0.00 0.00 4.37
4088 4523 9.069078 GTTAAAAACGCTCTTATATTTTGGGAC 57.931 33.333 0.00 0.00 0.00 4.46
4089 4524 5.479716 AAACGCTCTTATATTTTGGGACG 57.520 39.130 0.00 0.00 0.00 4.79
4090 4525 3.463944 ACGCTCTTATATTTTGGGACGG 58.536 45.455 0.00 0.00 0.00 4.79
4092 4527 3.741344 CGCTCTTATATTTTGGGACGGAG 59.259 47.826 0.00 0.00 0.00 4.63
4093 4528 4.065789 GCTCTTATATTTTGGGACGGAGG 58.934 47.826 0.00 0.00 0.00 4.30
4094 4529 4.642429 CTCTTATATTTTGGGACGGAGGG 58.358 47.826 0.00 0.00 0.00 4.30
4095 4530 4.300345 TCTTATATTTTGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
4096 4531 4.347000 TCTTATATTTTGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
4099 4534 1.732117 TTTTGGGACGGAGGGAGTAA 58.268 50.000 0.00 0.00 0.00 2.24
4100 4535 1.272807 TTTGGGACGGAGGGAGTAAG 58.727 55.000 0.00 0.00 0.00 2.34
4102 4537 0.324091 TGGGACGGAGGGAGTAAGAC 60.324 60.000 0.00 0.00 0.00 3.01
4105 4540 2.423947 GGGACGGAGGGAGTAAGACATA 60.424 54.545 0.00 0.00 0.00 2.29
4106 4541 2.885894 GGACGGAGGGAGTAAGACATAG 59.114 54.545 0.00 0.00 0.00 2.23
4107 4542 3.553904 GACGGAGGGAGTAAGACATAGT 58.446 50.000 0.00 0.00 0.00 2.12
4109 4544 5.315348 GACGGAGGGAGTAAGACATAGTAT 58.685 45.833 0.00 0.00 0.00 2.12
4111 4546 6.845908 ACGGAGGGAGTAAGACATAGTATTA 58.154 40.000 0.00 0.00 0.00 0.98
4113 4548 6.150809 CGGAGGGAGTAAGACATAGTATTACC 59.849 46.154 10.12 3.88 39.95 2.85
4114 4549 7.008941 GGAGGGAGTAAGACATAGTATTACCA 58.991 42.308 10.12 0.00 39.95 3.25
4115 4550 7.674772 GGAGGGAGTAAGACATAGTATTACCAT 59.325 40.741 10.12 0.00 39.95 3.55
4116 4551 8.653036 AGGGAGTAAGACATAGTATTACCATC 57.347 38.462 10.12 4.10 39.95 3.51
4117 4552 8.457757 AGGGAGTAAGACATAGTATTACCATCT 58.542 37.037 10.12 4.23 39.95 2.90
4118 4553 9.091220 GGGAGTAAGACATAGTATTACCATCTT 57.909 37.037 10.12 0.00 39.95 2.40
4125 4560 9.884814 AGACATAGTATTACCATCTTCTAAGGT 57.115 33.333 0.00 0.00 39.41 3.50
4134 4569 4.460382 ACCATCTTCTAAGGTAAACGTCGA 59.540 41.667 0.00 0.00 32.92 4.20
4135 4570 5.047802 ACCATCTTCTAAGGTAAACGTCGAA 60.048 40.000 0.00 0.00 32.92 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.925285 ATCCGGGATGCCACACATGT 61.925 55.000 9.17 0.00 39.84 3.21
90 91 1.077787 TTCATCCGGGATGCCACAC 60.078 57.895 28.46 0.00 39.63 3.82
93 94 2.595095 GGTTCATCCGGGATGCCA 59.405 61.111 28.46 16.47 39.63 4.92
184 185 2.101209 CTGCAACCTCGTTTTCGCGT 62.101 55.000 5.77 0.00 43.73 6.01
207 208 4.675029 CTTGTTCGTCGGGGGCGT 62.675 66.667 0.00 0.00 30.45 5.68
236 237 1.672356 AACGCAGGTGATGGACAGC 60.672 57.895 0.00 0.00 46.00 4.40
237 238 0.320683 TCAACGCAGGTGATGGACAG 60.321 55.000 0.00 0.00 0.00 3.51
238 239 0.320683 CTCAACGCAGGTGATGGACA 60.321 55.000 0.00 0.00 0.00 4.02
239 240 1.639298 GCTCAACGCAGGTGATGGAC 61.639 60.000 0.00 0.00 38.92 4.02
240 241 1.375908 GCTCAACGCAGGTGATGGA 60.376 57.895 0.00 0.00 38.92 3.41
241 242 2.743752 CGCTCAACGCAGGTGATGG 61.744 63.158 0.00 0.00 39.08 3.51
242 243 1.690283 CTCGCTCAACGCAGGTGATG 61.690 60.000 0.00 0.00 43.23 3.07
243 244 1.446792 CTCGCTCAACGCAGGTGAT 60.447 57.895 0.00 0.00 43.23 3.06
244 245 1.520600 TACTCGCTCAACGCAGGTGA 61.521 55.000 0.00 0.00 43.23 4.02
245 246 1.073216 CTACTCGCTCAACGCAGGTG 61.073 60.000 0.00 0.00 43.23 4.00
246 247 1.213013 CTACTCGCTCAACGCAGGT 59.787 57.895 0.00 0.00 43.23 4.00
247 248 0.109272 TTCTACTCGCTCAACGCAGG 60.109 55.000 0.00 0.00 43.23 4.85
248 249 0.985549 GTTCTACTCGCTCAACGCAG 59.014 55.000 0.00 0.00 43.23 5.18
249 250 0.388134 GGTTCTACTCGCTCAACGCA 60.388 55.000 0.00 0.00 43.23 5.24
250 251 1.077089 GGGTTCTACTCGCTCAACGC 61.077 60.000 0.00 0.00 43.23 4.84
251 252 0.797249 CGGGTTCTACTCGCTCAACG 60.797 60.000 0.00 0.00 34.24 4.10
252 253 3.031660 CGGGTTCTACTCGCTCAAC 57.968 57.895 0.00 0.00 34.24 3.18
258 259 1.062206 GACTCGCGGGTTCTACTCG 59.938 63.158 15.53 0.00 46.68 4.18
259 260 1.432657 GGACTCGCGGGTTCTACTC 59.567 63.158 15.53 0.00 0.00 2.59
260 261 2.404995 CGGACTCGCGGGTTCTACT 61.405 63.158 15.53 0.00 0.00 2.57
261 262 2.101770 CGGACTCGCGGGTTCTAC 59.898 66.667 15.53 0.00 0.00 2.59
271 272 2.100631 GTGTTGGATGGCGGACTCG 61.101 63.158 0.00 0.00 39.81 4.18
272 273 2.100631 CGTGTTGGATGGCGGACTC 61.101 63.158 0.00 0.00 0.00 3.36
273 274 2.047274 CGTGTTGGATGGCGGACT 60.047 61.111 0.00 0.00 0.00 3.85
274 275 3.124921 CCGTGTTGGATGGCGGAC 61.125 66.667 0.00 0.00 46.33 4.79
279 280 3.430862 CCGTGCCGTGTTGGATGG 61.431 66.667 0.00 0.00 42.00 3.51
280 281 3.430862 CCCGTGCCGTGTTGGATG 61.431 66.667 0.00 0.00 42.00 3.51
300 301 3.772281 TATTCGACCCGGCCGCAA 61.772 61.111 22.85 6.90 0.00 4.85
301 302 4.517815 GTATTCGACCCGGCCGCA 62.518 66.667 22.85 0.00 0.00 5.69
303 304 3.818982 CTCGTATTCGACCCGGCCG 62.819 68.421 21.04 21.04 41.35 6.13
304 305 2.027169 CTCGTATTCGACCCGGCC 59.973 66.667 0.00 0.00 41.35 6.13
305 306 2.657620 GCTCGTATTCGACCCGGC 60.658 66.667 0.00 0.00 41.35 6.13
306 307 2.353145 CGCTCGTATTCGACCCGG 60.353 66.667 0.00 0.00 41.35 5.73
307 308 2.353145 CCGCTCGTATTCGACCCG 60.353 66.667 0.00 0.00 41.35 5.28
308 309 1.789078 TAGCCGCTCGTATTCGACCC 61.789 60.000 0.00 0.00 41.35 4.46
309 310 0.659711 GTAGCCGCTCGTATTCGACC 60.660 60.000 0.00 0.00 41.35 4.79
310 311 0.990786 CGTAGCCGCTCGTATTCGAC 60.991 60.000 0.00 0.00 41.35 4.20
311 312 1.277739 CGTAGCCGCTCGTATTCGA 59.722 57.895 0.00 0.00 44.12 3.71
312 313 1.010350 ACGTAGCCGCTCGTATTCG 60.010 57.895 13.79 6.37 38.52 3.34
313 314 0.028505 TCACGTAGCCGCTCGTATTC 59.971 55.000 14.64 0.00 38.52 1.75
314 315 0.452987 TTCACGTAGCCGCTCGTATT 59.547 50.000 14.64 0.00 38.52 1.89
315 316 0.248377 GTTCACGTAGCCGCTCGTAT 60.248 55.000 14.64 0.00 38.52 3.06
316 317 1.135315 GTTCACGTAGCCGCTCGTA 59.865 57.895 14.64 2.10 38.52 3.43
317 318 2.126580 GTTCACGTAGCCGCTCGT 60.127 61.111 10.75 10.75 40.99 4.18
318 319 2.879462 GGTTCACGTAGCCGCTCG 60.879 66.667 0.00 3.33 37.70 5.03
319 320 2.508663 GGGTTCACGTAGCCGCTC 60.509 66.667 0.00 0.00 37.70 5.03
320 321 4.078516 GGGGTTCACGTAGCCGCT 62.079 66.667 0.00 0.00 38.26 5.52
321 322 4.382320 TGGGGTTCACGTAGCCGC 62.382 66.667 10.81 10.81 41.23 6.53
322 323 2.433664 GTGGGGTTCACGTAGCCG 60.434 66.667 0.67 0.00 36.56 5.52
329 330 1.885163 ATCCTCGTCGTGGGGTTCAC 61.885 60.000 13.11 0.00 42.74 3.18
330 331 1.608336 ATCCTCGTCGTGGGGTTCA 60.608 57.895 13.11 0.00 0.00 3.18
331 332 1.153628 CATCCTCGTCGTGGGGTTC 60.154 63.158 13.11 0.00 0.00 3.62
332 333 1.605058 CTCATCCTCGTCGTGGGGTT 61.605 60.000 13.11 0.00 0.00 4.11
333 334 2.036731 TCATCCTCGTCGTGGGGT 59.963 61.111 13.11 0.50 0.00 4.95
334 335 2.808315 CTCATCCTCGTCGTGGGG 59.192 66.667 13.11 6.55 0.00 4.96
335 336 2.105128 GCTCATCCTCGTCGTGGG 59.895 66.667 13.11 7.03 0.00 4.61
336 337 2.105128 GGCTCATCCTCGTCGTGG 59.895 66.667 7.02 7.02 0.00 4.94
337 338 2.278206 CGGCTCATCCTCGTCGTG 60.278 66.667 0.00 0.00 0.00 4.35
338 339 4.194720 GCGGCTCATCCTCGTCGT 62.195 66.667 0.00 0.00 0.00 4.34
339 340 4.933064 GGCGGCTCATCCTCGTCG 62.933 72.222 0.00 0.00 0.00 5.12
340 341 2.194212 TAGGCGGCTCATCCTCGTC 61.194 63.158 17.67 0.00 34.02 4.20
341 342 2.123854 TAGGCGGCTCATCCTCGT 60.124 61.111 17.67 0.00 34.02 4.18
342 343 2.336809 GTAGGCGGCTCATCCTCG 59.663 66.667 17.67 0.00 34.02 4.63
343 344 1.834822 AGGTAGGCGGCTCATCCTC 60.835 63.158 17.67 0.00 34.02 3.71
344 345 2.136878 CAGGTAGGCGGCTCATCCT 61.137 63.158 17.67 18.76 36.51 3.24
345 346 2.423446 CAGGTAGGCGGCTCATCC 59.577 66.667 17.67 16.70 0.00 3.51
346 347 2.280457 GCAGGTAGGCGGCTCATC 60.280 66.667 17.67 7.51 0.00 2.92
347 348 3.083349 TGCAGGTAGGCGGCTCAT 61.083 61.111 17.67 1.73 36.28 2.90
348 349 3.774528 CTGCAGGTAGGCGGCTCA 61.775 66.667 17.67 5.87 36.28 4.26
353 354 4.393155 TGTGGCTGCAGGTAGGCG 62.393 66.667 17.12 0.00 45.43 5.52
354 355 2.437359 CTGTGGCTGCAGGTAGGC 60.437 66.667 17.12 2.64 43.03 3.93
355 356 1.078848 GTCTGTGGCTGCAGGTAGG 60.079 63.158 17.12 0.00 37.12 3.18
356 357 1.078848 GGTCTGTGGCTGCAGGTAG 60.079 63.158 17.12 0.00 37.12 3.18
357 358 1.830587 CTGGTCTGTGGCTGCAGGTA 61.831 60.000 17.12 0.00 37.12 3.08
358 359 3.170672 TGGTCTGTGGCTGCAGGT 61.171 61.111 17.12 0.00 37.12 4.00
359 360 2.359602 CTGGTCTGTGGCTGCAGG 60.360 66.667 17.12 0.00 37.12 4.85
360 361 1.375652 CTCTGGTCTGTGGCTGCAG 60.376 63.158 10.11 10.11 37.81 4.41
361 362 2.745698 CTCTGGTCTGTGGCTGCA 59.254 61.111 0.50 0.00 0.00 4.41
362 363 2.745492 GCTCTGGTCTGTGGCTGC 60.745 66.667 0.00 0.00 0.00 5.25
363 364 2.433838 CGCTCTGGTCTGTGGCTG 60.434 66.667 0.00 0.00 0.00 4.85
364 365 2.601666 TCGCTCTGGTCTGTGGCT 60.602 61.111 0.00 0.00 0.00 4.75
365 366 2.433318 GTCGCTCTGGTCTGTGGC 60.433 66.667 0.00 0.00 0.00 5.01
366 367 0.946221 GTTGTCGCTCTGGTCTGTGG 60.946 60.000 0.00 0.00 0.00 4.17
367 368 0.946221 GGTTGTCGCTCTGGTCTGTG 60.946 60.000 0.00 0.00 0.00 3.66
368 369 1.367840 GGTTGTCGCTCTGGTCTGT 59.632 57.895 0.00 0.00 0.00 3.41
369 370 1.734477 CGGTTGTCGCTCTGGTCTG 60.734 63.158 0.00 0.00 0.00 3.51
370 371 2.651361 CGGTTGTCGCTCTGGTCT 59.349 61.111 0.00 0.00 0.00 3.85
371 372 2.432628 CCGGTTGTCGCTCTGGTC 60.433 66.667 0.00 0.00 37.59 4.02
372 373 3.231736 ACCGGTTGTCGCTCTGGT 61.232 61.111 0.00 0.00 38.35 4.00
373 374 2.738521 CACCGGTTGTCGCTCTGG 60.739 66.667 2.97 0.00 37.59 3.86
374 375 2.738521 CCACCGGTTGTCGCTCTG 60.739 66.667 2.97 0.00 37.59 3.35
375 376 4.003788 CCCACCGGTTGTCGCTCT 62.004 66.667 2.97 0.00 37.59 4.09
376 377 3.934391 CTCCCACCGGTTGTCGCTC 62.934 68.421 2.97 0.00 37.59 5.03
377 378 4.003788 CTCCCACCGGTTGTCGCT 62.004 66.667 2.97 0.00 37.59 4.93
378 379 3.934391 CTCTCCCACCGGTTGTCGC 62.934 68.421 2.97 0.00 37.59 5.19
379 380 2.261671 CTCTCCCACCGGTTGTCG 59.738 66.667 2.97 0.00 38.88 4.35
380 381 1.477685 TTCCTCTCCCACCGGTTGTC 61.478 60.000 2.97 0.00 0.00 3.18
381 382 1.460689 TTCCTCTCCCACCGGTTGT 60.461 57.895 2.97 0.00 0.00 3.32
382 383 1.003718 GTTCCTCTCCCACCGGTTG 60.004 63.158 2.97 0.00 0.00 3.77
383 384 2.580601 CGTTCCTCTCCCACCGGTT 61.581 63.158 2.97 0.00 0.00 4.44
384 385 2.995574 CGTTCCTCTCCCACCGGT 60.996 66.667 0.00 0.00 0.00 5.28
385 386 2.678934 TCGTTCCTCTCCCACCGG 60.679 66.667 0.00 0.00 0.00 5.28
386 387 2.214181 CTGTCGTTCCTCTCCCACCG 62.214 65.000 0.00 0.00 0.00 4.94
387 388 1.592223 CTGTCGTTCCTCTCCCACC 59.408 63.158 0.00 0.00 0.00 4.61
388 389 1.186267 ACCTGTCGTTCCTCTCCCAC 61.186 60.000 0.00 0.00 0.00 4.61
389 390 1.155390 ACCTGTCGTTCCTCTCCCA 59.845 57.895 0.00 0.00 0.00 4.37
390 391 1.592223 CACCTGTCGTTCCTCTCCC 59.408 63.158 0.00 0.00 0.00 4.30
391 392 1.592223 CCACCTGTCGTTCCTCTCC 59.408 63.158 0.00 0.00 0.00 3.71
392 393 1.079750 GCCACCTGTCGTTCCTCTC 60.080 63.158 0.00 0.00 0.00 3.20
393 394 1.407656 TTGCCACCTGTCGTTCCTCT 61.408 55.000 0.00 0.00 0.00 3.69
394 395 0.534203 TTTGCCACCTGTCGTTCCTC 60.534 55.000 0.00 0.00 0.00 3.71
395 396 0.535102 CTTTGCCACCTGTCGTTCCT 60.535 55.000 0.00 0.00 0.00 3.36
396 397 1.949257 CTTTGCCACCTGTCGTTCC 59.051 57.895 0.00 0.00 0.00 3.62
397 398 1.282875 GCTTTGCCACCTGTCGTTC 59.717 57.895 0.00 0.00 0.00 3.95
398 399 0.823356 ATGCTTTGCCACCTGTCGTT 60.823 50.000 0.00 0.00 0.00 3.85
399 400 0.823356 AATGCTTTGCCACCTGTCGT 60.823 50.000 0.00 0.00 0.00 4.34
400 401 1.131126 CTAATGCTTTGCCACCTGTCG 59.869 52.381 0.00 0.00 0.00 4.35
401 402 1.474077 CCTAATGCTTTGCCACCTGTC 59.526 52.381 0.00 0.00 0.00 3.51
402 403 1.549203 CCTAATGCTTTGCCACCTGT 58.451 50.000 0.00 0.00 0.00 4.00
403 404 0.819582 CCCTAATGCTTTGCCACCTG 59.180 55.000 0.00 0.00 0.00 4.00
404 405 0.324645 CCCCTAATGCTTTGCCACCT 60.325 55.000 0.00 0.00 0.00 4.00
405 406 1.960040 GCCCCTAATGCTTTGCCACC 61.960 60.000 0.00 0.00 0.00 4.61
406 407 1.517361 GCCCCTAATGCTTTGCCAC 59.483 57.895 0.00 0.00 0.00 5.01
407 408 2.051518 CGCCCCTAATGCTTTGCCA 61.052 57.895 0.00 0.00 0.00 4.92
408 409 2.807622 CGCCCCTAATGCTTTGCC 59.192 61.111 0.00 0.00 0.00 4.52
409 410 2.104928 GCGCCCCTAATGCTTTGC 59.895 61.111 0.00 0.00 0.00 3.68
410 411 2.807622 GGCGCCCCTAATGCTTTG 59.192 61.111 18.11 0.00 0.00 2.77
411 412 2.828549 CGGCGCCCCTAATGCTTT 60.829 61.111 23.46 0.00 0.00 3.51
412 413 4.875713 CCGGCGCCCCTAATGCTT 62.876 66.667 23.46 0.00 0.00 3.91
436 437 4.430765 ATCGACGTGCGGTGGGAC 62.431 66.667 0.00 0.00 41.33 4.46
437 438 4.124351 GATCGACGTGCGGTGGGA 62.124 66.667 0.00 0.00 41.33 4.37
438 439 2.071844 ATAGATCGACGTGCGGTGGG 62.072 60.000 0.00 0.00 41.33 4.61
439 440 0.248907 AATAGATCGACGTGCGGTGG 60.249 55.000 0.00 0.00 41.33 4.61
440 441 1.121240 GAATAGATCGACGTGCGGTG 58.879 55.000 0.00 0.00 41.33 4.94
441 442 0.030369 GGAATAGATCGACGTGCGGT 59.970 55.000 0.00 0.00 41.33 5.68
442 443 0.311165 AGGAATAGATCGACGTGCGG 59.689 55.000 0.00 0.00 41.33 5.69
443 444 2.479275 TCTAGGAATAGATCGACGTGCG 59.521 50.000 0.00 0.00 42.69 5.34
444 445 3.365164 GGTCTAGGAATAGATCGACGTGC 60.365 52.174 0.00 0.00 0.00 5.34
445 446 3.813724 TGGTCTAGGAATAGATCGACGTG 59.186 47.826 0.00 0.00 29.93 4.49
446 447 4.082665 TGGTCTAGGAATAGATCGACGT 57.917 45.455 0.00 0.00 29.93 4.34
447 448 4.695928 TCATGGTCTAGGAATAGATCGACG 59.304 45.833 0.00 0.00 29.93 5.12
448 449 6.431543 TCTTCATGGTCTAGGAATAGATCGAC 59.568 42.308 0.00 0.00 29.93 4.20
449 450 6.543735 TCTTCATGGTCTAGGAATAGATCGA 58.456 40.000 0.00 0.00 29.93 3.59
450 451 6.825944 TCTTCATGGTCTAGGAATAGATCG 57.174 41.667 0.00 0.00 29.93 3.69
451 452 7.479980 CGATCTTCATGGTCTAGGAATAGATC 58.520 42.308 0.00 0.00 32.17 2.75
452 453 6.127479 GCGATCTTCATGGTCTAGGAATAGAT 60.127 42.308 0.00 0.00 0.00 1.98
453 454 5.184096 GCGATCTTCATGGTCTAGGAATAGA 59.816 44.000 0.00 0.00 0.00 1.98
454 455 5.406649 GCGATCTTCATGGTCTAGGAATAG 58.593 45.833 0.00 0.00 0.00 1.73
455 456 4.220821 GGCGATCTTCATGGTCTAGGAATA 59.779 45.833 0.00 0.00 0.00 1.75
456 457 3.007398 GGCGATCTTCATGGTCTAGGAAT 59.993 47.826 0.00 0.00 0.00 3.01
457 458 2.365617 GGCGATCTTCATGGTCTAGGAA 59.634 50.000 0.00 0.00 0.00 3.36
458 459 1.964223 GGCGATCTTCATGGTCTAGGA 59.036 52.381 0.00 0.00 0.00 2.94
459 460 1.336332 CGGCGATCTTCATGGTCTAGG 60.336 57.143 0.00 0.00 0.00 3.02
460 461 1.932604 GCGGCGATCTTCATGGTCTAG 60.933 57.143 12.98 0.00 0.00 2.43
461 462 0.032130 GCGGCGATCTTCATGGTCTA 59.968 55.000 12.98 0.00 0.00 2.59
462 463 1.227380 GCGGCGATCTTCATGGTCT 60.227 57.895 12.98 0.00 0.00 3.85
463 464 2.247437 GGCGGCGATCTTCATGGTC 61.247 63.158 12.98 0.00 0.00 4.02
464 465 2.203070 GGCGGCGATCTTCATGGT 60.203 61.111 12.98 0.00 0.00 3.55
465 466 3.341043 CGGCGGCGATCTTCATGG 61.341 66.667 29.19 0.00 0.00 3.66
466 467 2.586079 ACGGCGGCGATCTTCATG 60.586 61.111 38.93 5.69 0.00 3.07
467 468 2.279517 GACGGCGGCGATCTTCAT 60.280 61.111 38.93 14.02 0.00 2.57
468 469 4.847516 CGACGGCGGCGATCTTCA 62.848 66.667 38.93 0.00 0.00 3.02
472 473 4.918129 TTAGCGACGGCGGCGATC 62.918 66.667 41.98 27.16 46.35 3.69
475 476 3.818982 ATAGTTAGCGACGGCGGCG 62.819 63.158 33.71 33.71 46.35 6.46
476 477 2.015090 GATAGTTAGCGACGGCGGC 61.015 63.158 15.06 7.52 46.35 6.53
477 478 0.870393 TAGATAGTTAGCGACGGCGG 59.130 55.000 15.06 0.00 46.35 6.13
478 479 2.095869 ACATAGATAGTTAGCGACGGCG 60.096 50.000 6.12 6.12 46.35 6.46
479 480 3.188873 AGACATAGATAGTTAGCGACGGC 59.811 47.826 0.00 0.00 40.37 5.68
480 481 4.713806 CAGACATAGATAGTTAGCGACGG 58.286 47.826 0.00 0.00 0.00 4.79
481 482 4.152526 GCAGACATAGATAGTTAGCGACG 58.847 47.826 0.00 0.00 0.00 5.12
482 483 4.912766 GTGCAGACATAGATAGTTAGCGAC 59.087 45.833 0.00 0.00 0.00 5.19
483 484 4.578928 TGTGCAGACATAGATAGTTAGCGA 59.421 41.667 0.00 0.00 0.00 4.93
484 485 4.677378 GTGTGCAGACATAGATAGTTAGCG 59.323 45.833 9.48 0.00 33.63 4.26
485 486 4.985409 GGTGTGCAGACATAGATAGTTAGC 59.015 45.833 16.68 0.00 33.63 3.09
486 487 5.069119 TGGGTGTGCAGACATAGATAGTTAG 59.931 44.000 16.68 0.00 33.63 2.34
487 488 4.959839 TGGGTGTGCAGACATAGATAGTTA 59.040 41.667 16.68 0.00 33.63 2.24
488 489 3.774766 TGGGTGTGCAGACATAGATAGTT 59.225 43.478 16.68 0.00 33.63 2.24
489 490 3.374764 TGGGTGTGCAGACATAGATAGT 58.625 45.455 16.68 0.00 33.63 2.12
490 491 4.406648 TTGGGTGTGCAGACATAGATAG 57.593 45.455 16.68 0.00 33.63 2.08
491 492 4.835284 TTTGGGTGTGCAGACATAGATA 57.165 40.909 16.68 0.00 33.63 1.98
492 493 3.719268 TTTGGGTGTGCAGACATAGAT 57.281 42.857 16.68 0.00 33.63 1.98
493 494 3.719268 ATTTGGGTGTGCAGACATAGA 57.281 42.857 16.68 0.00 33.63 1.98
494 495 3.627577 GGTATTTGGGTGTGCAGACATAG 59.372 47.826 16.68 0.00 33.63 2.23
495 496 3.009584 TGGTATTTGGGTGTGCAGACATA 59.990 43.478 16.68 2.08 33.63 2.29
496 497 2.224992 TGGTATTTGGGTGTGCAGACAT 60.225 45.455 16.68 3.09 33.63 3.06
497 498 1.143889 TGGTATTTGGGTGTGCAGACA 59.856 47.619 16.68 0.00 0.00 3.41
498 499 1.904287 TGGTATTTGGGTGTGCAGAC 58.096 50.000 5.20 5.20 0.00 3.51
499 500 2.445427 CATGGTATTTGGGTGTGCAGA 58.555 47.619 0.00 0.00 0.00 4.26
500 501 1.135024 GCATGGTATTTGGGTGTGCAG 60.135 52.381 0.00 0.00 0.00 4.41
501 502 0.894141 GCATGGTATTTGGGTGTGCA 59.106 50.000 0.00 0.00 0.00 4.57
502 503 0.175531 GGCATGGTATTTGGGTGTGC 59.824 55.000 0.00 0.00 0.00 4.57
503 504 1.204467 GTGGCATGGTATTTGGGTGTG 59.796 52.381 0.00 0.00 0.00 3.82
504 505 1.555967 GTGGCATGGTATTTGGGTGT 58.444 50.000 0.00 0.00 0.00 4.16
505 506 0.455410 CGTGGCATGGTATTTGGGTG 59.545 55.000 0.00 0.00 0.00 4.61
506 507 0.039035 ACGTGGCATGGTATTTGGGT 59.961 50.000 12.05 0.00 0.00 4.51
507 508 0.738389 GACGTGGCATGGTATTTGGG 59.262 55.000 12.05 0.00 0.00 4.12
508 509 1.132262 GTGACGTGGCATGGTATTTGG 59.868 52.381 12.05 0.00 0.00 3.28
509 510 1.809547 TGTGACGTGGCATGGTATTTG 59.190 47.619 12.05 0.00 0.00 2.32
510 511 1.810151 GTGTGACGTGGCATGGTATTT 59.190 47.619 12.05 0.00 0.00 1.40
511 512 1.003118 AGTGTGACGTGGCATGGTATT 59.997 47.619 12.05 0.00 0.00 1.89
512 513 0.613260 AGTGTGACGTGGCATGGTAT 59.387 50.000 12.05 0.00 0.00 2.73
513 514 0.394938 AAGTGTGACGTGGCATGGTA 59.605 50.000 12.05 0.00 0.00 3.25
514 515 0.884704 GAAGTGTGACGTGGCATGGT 60.885 55.000 12.05 2.45 0.00 3.55
515 516 0.603707 AGAAGTGTGACGTGGCATGG 60.604 55.000 12.05 0.00 0.00 3.66
516 517 0.514255 CAGAAGTGTGACGTGGCATG 59.486 55.000 4.87 4.87 0.00 4.06
517 518 0.603707 CCAGAAGTGTGACGTGGCAT 60.604 55.000 0.00 0.00 0.00 4.40
518 519 1.227527 CCAGAAGTGTGACGTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
519 520 2.607892 GCCAGAAGTGTGACGTGGC 61.608 63.158 0.00 0.00 46.49 5.01
520 521 1.961277 GGCCAGAAGTGTGACGTGG 60.961 63.158 0.00 0.00 0.00 4.94
521 522 1.227527 TGGCCAGAAGTGTGACGTG 60.228 57.895 0.00 0.00 0.00 4.49
522 523 1.227556 GTGGCCAGAAGTGTGACGT 60.228 57.895 5.11 0.00 0.00 4.34
523 524 1.224069 CTGTGGCCAGAAGTGTGACG 61.224 60.000 5.11 0.00 41.50 4.35
524 525 0.106708 TCTGTGGCCAGAAGTGTGAC 59.893 55.000 5.11 0.00 44.67 3.67
525 526 2.526958 TCTGTGGCCAGAAGTGTGA 58.473 52.632 5.11 0.00 44.67 3.58
532 533 4.329545 GGCGGTTCTGTGGCCAGA 62.330 66.667 5.11 2.89 45.95 3.86
536 537 1.173913 ATTTTAGGCGGTTCTGTGGC 58.826 50.000 0.00 0.00 0.00 5.01
537 538 2.817258 TCAATTTTAGGCGGTTCTGTGG 59.183 45.455 0.00 0.00 0.00 4.17
538 539 3.119849 CCTCAATTTTAGGCGGTTCTGTG 60.120 47.826 0.00 0.00 0.00 3.66
539 540 3.081804 CCTCAATTTTAGGCGGTTCTGT 58.918 45.455 0.00 0.00 0.00 3.41
540 541 3.764885 CCTCAATTTTAGGCGGTTCTG 57.235 47.619 0.00 0.00 0.00 3.02
548 549 6.934048 TTTTGGTTTTGCCTCAATTTTAGG 57.066 33.333 0.00 0.00 38.35 2.69
549 550 9.235537 CAATTTTTGGTTTTGCCTCAATTTTAG 57.764 29.630 0.00 0.00 38.35 1.85
550 551 8.960591 TCAATTTTTGGTTTTGCCTCAATTTTA 58.039 25.926 0.00 0.00 38.35 1.52
551 552 7.834803 TCAATTTTTGGTTTTGCCTCAATTTT 58.165 26.923 0.00 0.00 38.35 1.82
552 553 7.401955 TCAATTTTTGGTTTTGCCTCAATTT 57.598 28.000 0.00 0.00 38.35 1.82
553 554 6.039605 CCTCAATTTTTGGTTTTGCCTCAATT 59.960 34.615 0.00 0.00 38.35 2.32
554 555 5.532032 CCTCAATTTTTGGTTTTGCCTCAAT 59.468 36.000 0.00 0.00 38.35 2.57
555 556 4.880696 CCTCAATTTTTGGTTTTGCCTCAA 59.119 37.500 0.00 0.00 38.35 3.02
556 557 4.450053 CCTCAATTTTTGGTTTTGCCTCA 58.550 39.130 0.00 0.00 38.35 3.86
557 558 3.250762 GCCTCAATTTTTGGTTTTGCCTC 59.749 43.478 0.00 0.00 38.35 4.70
558 559 3.213506 GCCTCAATTTTTGGTTTTGCCT 58.786 40.909 0.00 0.00 38.35 4.75
559 560 2.948315 TGCCTCAATTTTTGGTTTTGCC 59.052 40.909 0.00 0.00 37.90 4.52
560 561 4.629251 TTGCCTCAATTTTTGGTTTTGC 57.371 36.364 0.00 0.00 0.00 3.68
561 562 5.804473 GGTTTTGCCTCAATTTTTGGTTTTG 59.196 36.000 0.00 0.00 0.00 2.44
562 563 5.478332 TGGTTTTGCCTCAATTTTTGGTTTT 59.522 32.000 0.00 0.00 38.35 2.43
563 564 5.012893 TGGTTTTGCCTCAATTTTTGGTTT 58.987 33.333 0.00 0.00 38.35 3.27
564 565 4.593956 TGGTTTTGCCTCAATTTTTGGTT 58.406 34.783 0.00 0.00 38.35 3.67
565 566 4.227864 TGGTTTTGCCTCAATTTTTGGT 57.772 36.364 0.00 0.00 38.35 3.67
566 567 5.049267 CAGATGGTTTTGCCTCAATTTTTGG 60.049 40.000 0.00 0.00 38.35 3.28
567 568 5.759273 TCAGATGGTTTTGCCTCAATTTTTG 59.241 36.000 0.00 0.00 38.35 2.44
568 569 5.927819 TCAGATGGTTTTGCCTCAATTTTT 58.072 33.333 0.00 0.00 38.35 1.94
569 570 5.511888 CCTCAGATGGTTTTGCCTCAATTTT 60.512 40.000 0.00 0.00 38.35 1.82
570 571 4.020839 CCTCAGATGGTTTTGCCTCAATTT 60.021 41.667 0.00 0.00 38.35 1.82
571 572 3.512724 CCTCAGATGGTTTTGCCTCAATT 59.487 43.478 0.00 0.00 38.35 2.32
572 573 3.094572 CCTCAGATGGTTTTGCCTCAAT 58.905 45.455 0.00 0.00 38.35 2.57
573 574 2.517959 CCTCAGATGGTTTTGCCTCAA 58.482 47.619 0.00 0.00 38.35 3.02
574 575 1.272092 CCCTCAGATGGTTTTGCCTCA 60.272 52.381 0.00 0.00 38.35 3.86
575 576 1.467920 CCCTCAGATGGTTTTGCCTC 58.532 55.000 0.00 0.00 38.35 4.70
576 577 0.040204 CCCCTCAGATGGTTTTGCCT 59.960 55.000 0.00 0.00 38.35 4.75
577 578 0.972471 CCCCCTCAGATGGTTTTGCC 60.972 60.000 0.00 0.00 37.90 4.52
578 579 0.039618 TCCCCCTCAGATGGTTTTGC 59.960 55.000 0.00 0.00 0.00 3.68
579 580 1.635487 TCTCCCCCTCAGATGGTTTTG 59.365 52.381 0.00 0.00 0.00 2.44
580 581 2.059756 TCTCCCCCTCAGATGGTTTT 57.940 50.000 0.00 0.00 0.00 2.43
581 582 2.293598 ATCTCCCCCTCAGATGGTTT 57.706 50.000 0.00 0.00 0.00 3.27
582 583 2.293598 AATCTCCCCCTCAGATGGTT 57.706 50.000 0.00 0.00 30.62 3.67
583 584 2.293598 AAATCTCCCCCTCAGATGGT 57.706 50.000 0.00 0.00 30.62 3.55
584 585 2.373502 GGTAAATCTCCCCCTCAGATGG 59.626 54.545 0.00 0.00 30.62 3.51
585 586 2.373502 GGGTAAATCTCCCCCTCAGATG 59.626 54.545 0.00 0.00 39.08 2.90
586 587 2.707554 GGGTAAATCTCCCCCTCAGAT 58.292 52.381 0.00 0.00 39.08 2.90
587 588 1.691482 CGGGTAAATCTCCCCCTCAGA 60.691 57.143 0.00 0.00 41.78 3.27
588 589 0.759346 CGGGTAAATCTCCCCCTCAG 59.241 60.000 0.00 0.00 41.78 3.35
589 590 0.693092 CCGGGTAAATCTCCCCCTCA 60.693 60.000 0.00 0.00 41.78 3.86
590 591 0.693430 ACCGGGTAAATCTCCCCCTC 60.693 60.000 6.32 0.00 41.78 4.30
591 592 0.253488 AACCGGGTAAATCTCCCCCT 60.253 55.000 6.32 0.00 41.78 4.79
592 593 0.627451 AAACCGGGTAAATCTCCCCC 59.373 55.000 6.32 0.00 41.78 5.40
593 594 2.519771 AAAACCGGGTAAATCTCCCC 57.480 50.000 6.32 0.00 41.78 4.81
594 595 7.828508 AATATTAAAACCGGGTAAATCTCCC 57.171 36.000 6.32 0.00 41.41 4.30
595 596 9.524106 CAAAATATTAAAACCGGGTAAATCTCC 57.476 33.333 6.32 0.00 0.00 3.71
596 597 9.524106 CCAAAATATTAAAACCGGGTAAATCTC 57.476 33.333 6.32 0.00 0.00 2.75
597 598 8.479689 CCCAAAATATTAAAACCGGGTAAATCT 58.520 33.333 6.32 0.00 0.00 2.40
598 599 7.711772 CCCCAAAATATTAAAACCGGGTAAATC 59.288 37.037 6.32 0.00 0.00 2.17
599 600 7.365742 CCCCCAAAATATTAAAACCGGGTAAAT 60.366 37.037 6.32 5.76 0.00 1.40
600 601 6.070366 CCCCCAAAATATTAAAACCGGGTAAA 60.070 38.462 6.32 0.00 0.00 2.01
601 602 5.424573 CCCCCAAAATATTAAAACCGGGTAA 59.575 40.000 6.32 1.20 0.00 2.85
602 603 4.961099 CCCCCAAAATATTAAAACCGGGTA 59.039 41.667 6.32 0.00 0.00 3.69
603 604 3.775866 CCCCCAAAATATTAAAACCGGGT 59.224 43.478 6.32 0.00 0.00 5.28
604 605 3.775866 ACCCCCAAAATATTAAAACCGGG 59.224 43.478 6.32 0.00 0.00 5.73
605 606 5.423704 AACCCCCAAAATATTAAAACCGG 57.576 39.130 0.00 0.00 0.00 5.28
606 607 8.843885 TTTTAACCCCCAAAATATTAAAACCG 57.156 30.769 0.00 0.00 32.54 4.44
612 613 8.911965 GGTACGATTTTAACCCCCAAAATATTA 58.088 33.333 0.00 0.00 36.09 0.98
613 614 7.399478 TGGTACGATTTTAACCCCCAAAATATT 59.601 33.333 0.00 0.00 36.09 1.28
614 615 6.896307 TGGTACGATTTTAACCCCCAAAATAT 59.104 34.615 0.00 0.00 36.09 1.28
615 616 6.251471 TGGTACGATTTTAACCCCCAAAATA 58.749 36.000 0.00 0.00 36.09 1.40
616 617 5.085219 TGGTACGATTTTAACCCCCAAAAT 58.915 37.500 0.00 0.00 38.09 1.82
617 618 4.477249 TGGTACGATTTTAACCCCCAAAA 58.523 39.130 0.00 0.00 31.97 2.44
618 619 4.109877 TGGTACGATTTTAACCCCCAAA 57.890 40.909 0.00 0.00 31.97 3.28
619 620 3.803186 TGGTACGATTTTAACCCCCAA 57.197 42.857 0.00 0.00 31.97 4.12
620 621 3.803186 TTGGTACGATTTTAACCCCCA 57.197 42.857 0.00 0.00 31.97 4.96
621 622 5.664294 AATTTGGTACGATTTTAACCCCC 57.336 39.130 0.00 0.00 31.97 5.40
622 623 6.689554 TCAAATTTGGTACGATTTTAACCCC 58.310 36.000 17.90 0.00 31.97 4.95
623 624 7.372714 ACTCAAATTTGGTACGATTTTAACCC 58.627 34.615 17.90 0.00 31.97 4.11
624 625 8.806177 AACTCAAATTTGGTACGATTTTAACC 57.194 30.769 17.90 0.00 0.00 2.85
625 626 9.453325 TGAACTCAAATTTGGTACGATTTTAAC 57.547 29.630 17.90 0.00 0.00 2.01
626 627 9.672086 CTGAACTCAAATTTGGTACGATTTTAA 57.328 29.630 17.90 0.00 0.00 1.52
627 628 8.293867 CCTGAACTCAAATTTGGTACGATTTTA 58.706 33.333 17.90 0.00 0.00 1.52
628 629 7.145323 CCTGAACTCAAATTTGGTACGATTTT 58.855 34.615 17.90 0.00 0.00 1.82
629 630 6.294508 CCCTGAACTCAAATTTGGTACGATTT 60.295 38.462 17.90 0.00 0.00 2.17
630 631 5.183140 CCCTGAACTCAAATTTGGTACGATT 59.817 40.000 17.90 4.22 0.00 3.34
631 632 4.700213 CCCTGAACTCAAATTTGGTACGAT 59.300 41.667 17.90 0.76 0.00 3.73
632 633 4.069304 CCCTGAACTCAAATTTGGTACGA 58.931 43.478 17.90 0.00 0.00 3.43
633 634 4.069304 TCCCTGAACTCAAATTTGGTACG 58.931 43.478 17.90 7.14 0.00 3.67
634 635 4.459337 CCTCCCTGAACTCAAATTTGGTAC 59.541 45.833 17.90 8.13 0.00 3.34
635 636 4.105697 ACCTCCCTGAACTCAAATTTGGTA 59.894 41.667 17.90 0.00 0.00 3.25
636 637 3.117131 ACCTCCCTGAACTCAAATTTGGT 60.117 43.478 17.90 11.63 0.00 3.67
637 638 3.500343 ACCTCCCTGAACTCAAATTTGG 58.500 45.455 17.90 11.02 0.00 3.28
638 639 6.840780 AATACCTCCCTGAACTCAAATTTG 57.159 37.500 12.15 12.15 0.00 2.32
639 640 6.782494 ACAAATACCTCCCTGAACTCAAATTT 59.218 34.615 0.00 0.00 0.00 1.82
640 641 6.314917 ACAAATACCTCCCTGAACTCAAATT 58.685 36.000 0.00 0.00 0.00 1.82
641 642 5.892348 ACAAATACCTCCCTGAACTCAAAT 58.108 37.500 0.00 0.00 0.00 2.32
642 643 5.313712 GACAAATACCTCCCTGAACTCAAA 58.686 41.667 0.00 0.00 0.00 2.69
643 644 4.263331 GGACAAATACCTCCCTGAACTCAA 60.263 45.833 0.00 0.00 0.00 3.02
644 645 3.263425 GGACAAATACCTCCCTGAACTCA 59.737 47.826 0.00 0.00 0.00 3.41
645 646 3.370633 GGGACAAATACCTCCCTGAACTC 60.371 52.174 0.00 0.00 42.84 3.01
646 647 2.576648 GGGACAAATACCTCCCTGAACT 59.423 50.000 0.00 0.00 42.84 3.01
647 648 3.000684 GGGACAAATACCTCCCTGAAC 57.999 52.381 0.00 0.00 42.84 3.18
655 656 3.844211 TGTAGCTTGAGGGACAAATACCT 59.156 43.478 0.00 0.00 44.86 3.08
656 657 4.216411 TGTAGCTTGAGGGACAAATACC 57.784 45.455 0.00 0.00 38.08 2.73
657 658 6.759497 AAATGTAGCTTGAGGGACAAATAC 57.241 37.500 0.00 0.00 38.08 1.89
658 659 6.152661 CCAAAATGTAGCTTGAGGGACAAATA 59.847 38.462 0.00 0.00 38.08 1.40
659 660 5.047092 CCAAAATGTAGCTTGAGGGACAAAT 60.047 40.000 0.00 0.00 38.08 2.32
660 661 4.280677 CCAAAATGTAGCTTGAGGGACAAA 59.719 41.667 0.00 0.00 38.08 2.83
661 662 3.826157 CCAAAATGTAGCTTGAGGGACAA 59.174 43.478 0.00 0.00 36.97 3.18
662 663 3.420893 CCAAAATGTAGCTTGAGGGACA 58.579 45.455 0.00 0.00 0.00 4.02
663 664 2.755103 CCCAAAATGTAGCTTGAGGGAC 59.245 50.000 0.00 0.00 37.22 4.46
664 665 2.291540 CCCCAAAATGTAGCTTGAGGGA 60.292 50.000 0.00 0.00 36.15 4.20
665 666 2.102578 CCCCAAAATGTAGCTTGAGGG 58.897 52.381 0.00 0.00 34.81 4.30
666 667 2.493278 CACCCCAAAATGTAGCTTGAGG 59.507 50.000 0.00 0.00 0.00 3.86
667 668 3.420893 TCACCCCAAAATGTAGCTTGAG 58.579 45.455 0.00 0.00 0.00 3.02
668 669 3.517296 TCACCCCAAAATGTAGCTTGA 57.483 42.857 0.00 0.00 0.00 3.02
669 670 4.599047 TTTCACCCCAAAATGTAGCTTG 57.401 40.909 0.00 0.00 0.00 4.01
670 671 5.364778 GTTTTTCACCCCAAAATGTAGCTT 58.635 37.500 0.00 0.00 0.00 3.74
671 672 4.500716 CGTTTTTCACCCCAAAATGTAGCT 60.501 41.667 0.00 0.00 0.00 3.32
672 673 3.738791 CGTTTTTCACCCCAAAATGTAGC 59.261 43.478 0.00 0.00 0.00 3.58
673 674 4.038162 TCCGTTTTTCACCCCAAAATGTAG 59.962 41.667 0.00 0.00 30.96 2.74
674 675 3.958798 TCCGTTTTTCACCCCAAAATGTA 59.041 39.130 0.00 0.00 30.96 2.29
675 676 2.766828 TCCGTTTTTCACCCCAAAATGT 59.233 40.909 0.00 0.00 30.96 2.71
676 677 3.127589 GTCCGTTTTTCACCCCAAAATG 58.872 45.455 0.00 0.00 32.19 2.32
677 678 3.035363 AGTCCGTTTTTCACCCCAAAAT 58.965 40.909 0.00 0.00 0.00 1.82
678 679 2.458620 AGTCCGTTTTTCACCCCAAAA 58.541 42.857 0.00 0.00 0.00 2.44
679 680 2.146920 AGTCCGTTTTTCACCCCAAA 57.853 45.000 0.00 0.00 0.00 3.28
680 681 2.025898 GAAGTCCGTTTTTCACCCCAA 58.974 47.619 0.00 0.00 0.00 4.12
681 682 1.213430 AGAAGTCCGTTTTTCACCCCA 59.787 47.619 0.00 0.00 0.00 4.96
682 683 1.977056 AGAAGTCCGTTTTTCACCCC 58.023 50.000 0.00 0.00 0.00 4.95
683 684 3.630769 AGAAAGAAGTCCGTTTTTCACCC 59.369 43.478 0.00 0.00 33.19 4.61
684 685 4.895224 AGAAAGAAGTCCGTTTTTCACC 57.105 40.909 0.00 0.00 33.19 4.02
685 686 8.677871 TTTAAAGAAAGAAGTCCGTTTTTCAC 57.322 30.769 0.00 0.00 33.19 3.18
686 687 9.694137 TTTTTAAAGAAAGAAGTCCGTTTTTCA 57.306 25.926 0.00 0.00 33.19 2.69
709 710 4.183101 CAGCCATTTGAGTGTGTGTTTTT 58.817 39.130 0.00 0.00 0.00 1.94
710 711 3.430651 CCAGCCATTTGAGTGTGTGTTTT 60.431 43.478 0.00 0.00 0.00 2.43
711 712 2.101249 CCAGCCATTTGAGTGTGTGTTT 59.899 45.455 0.00 0.00 0.00 2.83
712 713 1.682854 CCAGCCATTTGAGTGTGTGTT 59.317 47.619 0.00 0.00 0.00 3.32
713 714 1.321474 CCAGCCATTTGAGTGTGTGT 58.679 50.000 0.00 0.00 0.00 3.72
714 715 0.599558 CCCAGCCATTTGAGTGTGTG 59.400 55.000 0.00 0.00 0.00 3.82
715 716 1.181098 GCCCAGCCATTTGAGTGTGT 61.181 55.000 0.00 0.00 0.00 3.72
716 717 1.588082 GCCCAGCCATTTGAGTGTG 59.412 57.895 0.00 0.00 0.00 3.82
717 718 4.102113 GCCCAGCCATTTGAGTGT 57.898 55.556 0.00 0.00 0.00 3.55
739 740 0.825425 TTGGCGGAAATGGTGCAGAA 60.825 50.000 0.00 0.00 0.00 3.02
781 785 6.489603 TGAATTGAATGGGCTTCCTAACTAA 58.510 36.000 0.00 0.00 32.49 2.24
784 788 5.659440 TTGAATTGAATGGGCTTCCTAAC 57.341 39.130 0.00 0.00 32.49 2.34
785 789 6.352051 CCATTTGAATTGAATGGGCTTCCTAA 60.352 38.462 17.01 0.00 46.29 2.69
786 790 5.129155 CCATTTGAATTGAATGGGCTTCCTA 59.871 40.000 17.01 0.00 46.29 2.94
788 792 4.193865 CCATTTGAATTGAATGGGCTTCC 58.806 43.478 17.01 0.00 46.29 3.46
799 803 2.167075 GACTGGGCCTCCATTTGAATTG 59.833 50.000 4.53 0.00 43.11 2.32
834 838 1.750399 CTGCCAAGAATGTCGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
835 839 1.750399 CCTGCCAAGAATGTCGGGG 60.750 63.158 0.00 0.00 0.00 5.73
838 842 2.753966 CGGCCTGCCAAGAATGTCG 61.754 63.158 9.17 0.00 35.37 4.35
839 843 3.056313 GCGGCCTGCCAAGAATGTC 62.056 63.158 9.17 0.00 37.76 3.06
840 844 3.064324 GCGGCCTGCCAAGAATGT 61.064 61.111 9.17 0.00 37.76 2.71
841 845 3.060020 CTGCGGCCTGCCAAGAATG 62.060 63.158 15.40 0.00 45.60 2.67
842 846 2.753043 CTGCGGCCTGCCAAGAAT 60.753 61.111 15.40 0.00 45.60 2.40
914 923 1.034838 TTGCGGTTTGGCTTGTGAGT 61.035 50.000 0.00 0.00 0.00 3.41
1545 1558 4.353325 AGCATCAGAGCTCGGTCT 57.647 55.556 13.75 6.94 42.18 3.85
1596 1609 2.045131 GGAGTAGGTGACGCGGTCT 61.045 63.158 12.47 4.48 33.15 3.85
1704 1717 1.678627 ACTGCATTGTAACAAACCGCA 59.321 42.857 0.00 0.00 0.00 5.69
1752 1765 2.084546 ACCCGCATAGCTTTCTCAAAC 58.915 47.619 0.00 0.00 0.00 2.93
1801 1814 1.073319 TGGAGGGGTTGGGACTTGA 60.073 57.895 0.00 0.00 0.00 3.02
1814 1827 1.331756 GCATCGCATTGTAAGTGGAGG 59.668 52.381 0.00 0.00 0.00 4.30
2376 2402 1.957177 GCATCGTCTAGTCTCCCATCA 59.043 52.381 0.00 0.00 0.00 3.07
2622 2648 7.342026 AGTTTACAACCTTTCTCCAACATTTCT 59.658 33.333 0.00 0.00 0.00 2.52
2775 2801 5.774690 AGCAGAACAAAGACCATGGATTAAA 59.225 36.000 21.47 0.00 0.00 1.52
2820 2846 6.015856 TCTCTTTCATCTCAGAGAGAAAACGT 60.016 38.462 18.17 0.00 42.27 3.99
3084 3110 4.100189 ACAGCTCTGACCAGTATATTCCAC 59.900 45.833 3.60 0.00 0.00 4.02
3249 3275 5.363562 TGGCATGAGAGAAACTACATGAT 57.636 39.130 0.00 0.00 41.45 2.45
3251 3277 4.095483 GGTTGGCATGAGAGAAACTACATG 59.905 45.833 0.00 0.00 41.72 3.21
3320 3346 9.383519 GGTATCACTGAAATTCTAAACATCAGA 57.616 33.333 7.98 0.00 39.85 3.27
3348 3374 4.848299 CGCAGTTGAAAGTATGAAAGAAGC 59.152 41.667 0.00 0.00 0.00 3.86
3533 3575 3.200605 TGACCTGGTTACTGCATCATCAT 59.799 43.478 0.00 0.00 0.00 2.45
3534 3576 2.571202 TGACCTGGTTACTGCATCATCA 59.429 45.455 0.00 0.00 0.00 3.07
3535 3577 3.266510 TGACCTGGTTACTGCATCATC 57.733 47.619 0.00 0.00 0.00 2.92
3570 3613 5.692115 TTGTAAGCCCACTTAGATCATCA 57.308 39.130 0.00 0.00 39.05 3.07
3571 3614 8.725148 CAATATTGTAAGCCCACTTAGATCATC 58.275 37.037 7.32 0.00 39.05 2.92
3572 3615 8.439971 TCAATATTGTAAGCCCACTTAGATCAT 58.560 33.333 14.97 0.00 39.05 2.45
3573 3616 7.801104 TCAATATTGTAAGCCCACTTAGATCA 58.199 34.615 14.97 0.00 39.05 2.92
3574 3617 8.854614 ATCAATATTGTAAGCCCACTTAGATC 57.145 34.615 14.97 0.00 39.05 2.75
3575 3618 9.071276 CAATCAATATTGTAAGCCCACTTAGAT 57.929 33.333 14.97 0.00 39.05 1.98
3576 3619 8.450578 CAATCAATATTGTAAGCCCACTTAGA 57.549 34.615 14.97 0.00 39.05 2.10
3601 3645 6.307155 CACAAGATACGAAACTGAAATGGAC 58.693 40.000 0.00 0.00 0.00 4.02
3670 3714 8.160106 TGTCCATATTTGTGGCATGTATGTATA 58.840 33.333 0.00 0.00 39.19 1.47
3671 3715 7.003482 TGTCCATATTTGTGGCATGTATGTAT 58.997 34.615 0.00 0.00 39.19 2.29
3680 3725 2.593925 TGGTGTCCATATTTGTGGCA 57.406 45.000 0.00 0.00 39.19 4.92
3896 3947 8.153550 AGGTCATCTTTGAACAGGATATATGAC 58.846 37.037 0.00 0.00 42.38 3.06
3897 3948 8.267620 AGGTCATCTTTGAACAGGATATATGA 57.732 34.615 0.00 0.00 42.38 2.15
3898 3949 8.915057 AAGGTCATCTTTGAACAGGATATATG 57.085 34.615 0.00 0.00 42.38 1.78
4005 4056 3.906846 GGATGGAGGGAGTAGATGTCATT 59.093 47.826 0.00 0.00 0.00 2.57
4016 4067 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
4017 4068 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
4021 4072 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
4022 4073 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
4023 4074 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
4025 4076 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4027 4078 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4033 4468 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
4036 4471 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
4037 4472 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
4038 4473 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
4051 4486 6.510536 AGAGCGTTTTTAACACTAGTGTAGT 58.489 36.000 28.13 16.41 44.13 2.73
4052 4487 7.404139 AAGAGCGTTTTTAACACTAGTGTAG 57.596 36.000 28.13 14.03 44.13 2.74
4061 4496 8.794553 TCCCAAAATATAAGAGCGTTTTTAACA 58.205 29.630 0.00 0.00 0.00 2.41
4062 4497 9.069078 GTCCCAAAATATAAGAGCGTTTTTAAC 57.931 33.333 0.00 0.00 0.00 2.01
4066 4501 5.163693 CCGTCCCAAAATATAAGAGCGTTTT 60.164 40.000 0.00 0.00 0.00 2.43
4067 4502 4.334481 CCGTCCCAAAATATAAGAGCGTTT 59.666 41.667 0.00 0.00 0.00 3.60
4068 4503 3.875134 CCGTCCCAAAATATAAGAGCGTT 59.125 43.478 0.00 0.00 0.00 4.84
4069 4504 3.133362 TCCGTCCCAAAATATAAGAGCGT 59.867 43.478 0.00 0.00 0.00 5.07
4070 4505 3.724374 TCCGTCCCAAAATATAAGAGCG 58.276 45.455 0.00 0.00 0.00 5.03
4071 4506 4.065789 CCTCCGTCCCAAAATATAAGAGC 58.934 47.826 0.00 0.00 0.00 4.09
4072 4507 4.347000 TCCCTCCGTCCCAAAATATAAGAG 59.653 45.833 0.00 0.00 0.00 2.85
4074 4509 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4075 4510 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4076 4511 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4077 4512 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4078 4513 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4083 4518 0.324091 GTCTTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
4087 4522 3.666345 ACTATGTCTTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
4088 4523 6.150809 GGTAATACTATGTCTTACTCCCTCCG 59.849 46.154 6.14 0.00 29.74 4.63
4089 4524 7.008941 TGGTAATACTATGTCTTACTCCCTCC 58.991 42.308 6.14 0.00 29.74 4.30
4090 4525 8.653036 ATGGTAATACTATGTCTTACTCCCTC 57.347 38.462 0.00 0.00 29.74 4.30
4092 4527 8.653036 AGATGGTAATACTATGTCTTACTCCC 57.347 38.462 0.00 0.00 29.74 4.30
4099 4534 9.884814 ACCTTAGAAGATGGTAATACTATGTCT 57.115 33.333 0.00 0.23 33.82 3.41
4105 4540 8.975295 ACGTTTACCTTAGAAGATGGTAATACT 58.025 33.333 0.00 0.00 43.68 2.12
4106 4541 9.242477 GACGTTTACCTTAGAAGATGGTAATAC 57.758 37.037 0.00 0.00 43.68 1.89
4107 4542 8.131100 CGACGTTTACCTTAGAAGATGGTAATA 58.869 37.037 0.00 0.00 43.68 0.98
4109 4544 6.150976 TCGACGTTTACCTTAGAAGATGGTAA 59.849 38.462 0.00 0.00 42.97 2.85
4111 4546 4.460382 TCGACGTTTACCTTAGAAGATGGT 59.540 41.667 0.00 0.00 39.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.