Multiple sequence alignment - TraesCS3B01G398400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G398400 chr3B 100.000 4004 0 0 1 4004 629196163 629192160 0.000000e+00 7395
1 TraesCS3B01G398400 chr3D 93.304 2733 103 29 617 3305 473481914 473484610 0.000000e+00 3960
2 TraesCS3B01G398400 chr3D 81.694 661 57 34 1 625 473481244 473481876 3.600000e-135 492
3 TraesCS3B01G398400 chr3D 83.421 380 25 10 3303 3674 473484636 473484985 6.460000e-83 318
4 TraesCS3B01G398400 chr3A 89.396 3178 157 73 384 3479 615937996 615941075 0.000000e+00 3836
5 TraesCS3B01G398400 chr3A 89.091 165 12 3 36 194 615934541 615934705 2.440000e-47 200
6 TraesCS3B01G398400 chr3A 91.406 128 3 3 3547 3674 615941700 615941819 6.880000e-38 169
7 TraesCS3B01G398400 chr1D 76.058 2055 336 101 998 3004 375989727 375991673 0.000000e+00 926
8 TraesCS3B01G398400 chr1A 76.012 2051 335 92 998 3004 474791650 474793587 0.000000e+00 917
9 TraesCS3B01G398400 chr1B 75.714 2067 355 98 998 3004 502218002 502219981 0.000000e+00 900
10 TraesCS3B01G398400 chr5D 74.392 1687 316 73 1361 3004 42725390 42727003 2.040000e-172 616
11 TraesCS3B01G398400 chr5D 74.199 1686 306 78 1361 3004 249912099 249913697 5.770000e-163 584
12 TraesCS3B01G398400 chr2D 73.687 1695 303 82 1361 3004 185365809 185367411 9.860000e-146 527


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G398400 chr3B 629192160 629196163 4003 True 7395.000000 7395 100.000000 1 4004 1 chr3B.!!$R1 4003
1 TraesCS3B01G398400 chr3D 473481244 473484985 3741 False 1590.000000 3960 86.139667 1 3674 3 chr3D.!!$F1 3673
2 TraesCS3B01G398400 chr3A 615934541 615941819 7278 False 1401.666667 3836 89.964333 36 3674 3 chr3A.!!$F1 3638
3 TraesCS3B01G398400 chr1D 375989727 375991673 1946 False 926.000000 926 76.058000 998 3004 1 chr1D.!!$F1 2006
4 TraesCS3B01G398400 chr1A 474791650 474793587 1937 False 917.000000 917 76.012000 998 3004 1 chr1A.!!$F1 2006
5 TraesCS3B01G398400 chr1B 502218002 502219981 1979 False 900.000000 900 75.714000 998 3004 1 chr1B.!!$F1 2006
6 TraesCS3B01G398400 chr5D 42725390 42727003 1613 False 616.000000 616 74.392000 1361 3004 1 chr5D.!!$F1 1643
7 TraesCS3B01G398400 chr5D 249912099 249913697 1598 False 584.000000 584 74.199000 1361 3004 1 chr5D.!!$F2 1643
8 TraesCS3B01G398400 chr2D 185365809 185367411 1602 False 527.000000 527 73.687000 1361 3004 1 chr2D.!!$F1 1643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 329 0.102120 CCGAGCTGCAGTAGGAGAAG 59.898 60.000 16.64 0.00 34.74 2.85 F
794 4052 0.468226 GAGAGAGAGAGGGAGAGCGA 59.532 60.000 0.00 0.00 0.00 4.93 F
2241 5593 1.004891 AGGGGGATCCTTCCAGACC 59.995 63.158 21.21 9.33 45.47 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 5086 0.040958 GCCACTTCTTGCTGAACACG 60.041 55.000 0.00 0.0 0.00 4.49 R
2433 5791 1.743252 GGAGTTGGAGCTGAAGCCG 60.743 63.158 0.00 0.0 43.38 5.52 R
3806 7859 0.028505 CACACACTTGCACTGCTGTC 59.971 55.000 1.98 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 104 1.202879 TGCTTTGACCGGACAGGATTT 60.203 47.619 9.46 0.00 45.00 2.17
94 105 2.039216 TGCTTTGACCGGACAGGATTTA 59.961 45.455 9.46 0.00 45.00 1.40
107 118 6.647067 CGGACAGGATTTAAACTATCTGGATC 59.353 42.308 0.00 0.00 0.00 3.36
142 153 2.218953 CAAATCATGCACCATCCTGC 57.781 50.000 0.00 0.00 37.70 4.85
182 201 3.441222 TCACTGATTGCATTGTCATGACC 59.559 43.478 22.85 8.07 31.07 4.02
193 247 1.271163 TGTCATGACCGGGGTCTTTTC 60.271 52.381 22.85 8.19 44.80 2.29
196 250 0.322546 ATGACCGGGGTCTTTTCTGC 60.323 55.000 18.07 0.00 44.80 4.26
197 251 1.072505 GACCGGGGTCTTTTCTGCA 59.927 57.895 6.32 0.00 41.57 4.41
200 254 0.674895 CCGGGGTCTTTTCTGCAGAG 60.675 60.000 17.43 5.77 0.00 3.35
220 274 4.837972 GAGGATACCTCTGTTTCTTTGCT 58.162 43.478 10.16 0.00 46.41 3.91
230 284 4.130118 CTGTTTCTTTGCTCAGTACCAGT 58.870 43.478 0.00 0.00 0.00 4.00
231 285 3.876914 TGTTTCTTTGCTCAGTACCAGTG 59.123 43.478 0.00 0.00 0.00 3.66
238 292 1.941668 GCTCAGTACCAGTGCAAGGTC 60.942 57.143 14.83 7.82 40.54 3.85
239 293 0.317160 TCAGTACCAGTGCAAGGTCG 59.683 55.000 14.83 6.36 40.54 4.79
245 299 1.623811 ACCAGTGCAAGGTCGAGTATT 59.376 47.619 6.28 0.00 32.90 1.89
257 311 5.602628 AGGTCGAGTATTTCAGCTTATTCC 58.397 41.667 0.00 0.00 0.00 3.01
259 313 5.279384 GTCGAGTATTTCAGCTTATTCCGA 58.721 41.667 0.00 0.00 0.00 4.55
260 314 5.399892 GTCGAGTATTTCAGCTTATTCCGAG 59.600 44.000 0.00 0.00 0.00 4.63
261 315 4.149046 CGAGTATTTCAGCTTATTCCGAGC 59.851 45.833 0.00 0.00 40.43 5.03
267 321 3.071580 GCTTATTCCGAGCTGCAGT 57.928 52.632 16.64 1.59 37.18 4.40
268 322 2.225068 GCTTATTCCGAGCTGCAGTA 57.775 50.000 16.64 0.00 37.18 2.74
269 323 2.131183 GCTTATTCCGAGCTGCAGTAG 58.869 52.381 16.64 6.90 37.18 2.57
270 324 2.748605 CTTATTCCGAGCTGCAGTAGG 58.251 52.381 16.64 15.75 0.00 3.18
271 325 2.067365 TATTCCGAGCTGCAGTAGGA 57.933 50.000 16.64 17.76 0.00 2.94
272 326 0.749649 ATTCCGAGCTGCAGTAGGAG 59.250 55.000 16.64 2.87 36.10 3.69
273 327 0.323451 TTCCGAGCTGCAGTAGGAGA 60.323 55.000 16.64 9.49 34.74 3.71
274 328 0.323451 TCCGAGCTGCAGTAGGAGAA 60.323 55.000 16.64 0.00 34.74 2.87
275 329 0.102120 CCGAGCTGCAGTAGGAGAAG 59.898 60.000 16.64 0.00 34.74 2.85
276 330 0.814457 CGAGCTGCAGTAGGAGAAGT 59.186 55.000 16.64 0.00 34.74 3.01
277 331 2.017782 CGAGCTGCAGTAGGAGAAGTA 58.982 52.381 16.64 0.00 34.74 2.24
278 332 2.032799 CGAGCTGCAGTAGGAGAAGTAG 59.967 54.545 16.64 0.00 34.74 2.57
279 333 2.360801 GAGCTGCAGTAGGAGAAGTAGG 59.639 54.545 16.64 0.00 34.74 3.18
280 334 2.024846 AGCTGCAGTAGGAGAAGTAGGA 60.025 50.000 16.64 0.00 34.74 2.94
281 335 2.360801 GCTGCAGTAGGAGAAGTAGGAG 59.639 54.545 16.64 0.00 34.74 3.69
282 336 3.626930 CTGCAGTAGGAGAAGTAGGAGT 58.373 50.000 5.25 0.00 34.74 3.85
283 337 4.783055 CTGCAGTAGGAGAAGTAGGAGTA 58.217 47.826 5.25 0.00 34.74 2.59
284 338 5.381757 CTGCAGTAGGAGAAGTAGGAGTAT 58.618 45.833 5.25 0.00 34.74 2.12
285 339 5.767670 TGCAGTAGGAGAAGTAGGAGTATT 58.232 41.667 0.00 0.00 0.00 1.89
286 340 5.828859 TGCAGTAGGAGAAGTAGGAGTATTC 59.171 44.000 0.00 0.00 0.00 1.75
287 341 5.828859 GCAGTAGGAGAAGTAGGAGTATTCA 59.171 44.000 0.00 0.00 0.00 2.57
293 347 6.549364 AGGAGAAGTAGGAGTATTCACATCAG 59.451 42.308 0.00 0.00 0.00 2.90
296 350 5.528043 AGTAGGAGTATTCACATCAGCAG 57.472 43.478 0.00 0.00 0.00 4.24
301 355 4.367450 GAGTATTCACATCAGCAGTCTCC 58.633 47.826 0.00 0.00 0.00 3.71
302 356 2.306341 ATTCACATCAGCAGTCTCCG 57.694 50.000 0.00 0.00 0.00 4.63
307 361 3.006430 TCACATCAGCAGTCTCCGTTTAA 59.994 43.478 0.00 0.00 0.00 1.52
313 367 2.028930 AGCAGTCTCCGTTTAACAGAGG 60.029 50.000 8.28 0.00 0.00 3.69
314 368 2.288886 GCAGTCTCCGTTTAACAGAGGT 60.289 50.000 8.28 0.00 0.00 3.85
315 369 3.057033 GCAGTCTCCGTTTAACAGAGGTA 60.057 47.826 8.28 0.00 0.00 3.08
317 371 5.721232 CAGTCTCCGTTTAACAGAGGTATT 58.279 41.667 8.28 0.00 0.00 1.89
318 372 5.805994 CAGTCTCCGTTTAACAGAGGTATTC 59.194 44.000 8.28 0.00 0.00 1.75
319 373 5.479375 AGTCTCCGTTTAACAGAGGTATTCA 59.521 40.000 8.28 0.00 0.00 2.57
320 374 5.805994 GTCTCCGTTTAACAGAGGTATTCAG 59.194 44.000 8.28 0.00 0.00 3.02
321 375 5.713389 TCTCCGTTTAACAGAGGTATTCAGA 59.287 40.000 8.28 0.00 0.00 3.27
322 376 6.209986 TCTCCGTTTAACAGAGGTATTCAGAA 59.790 38.462 8.28 0.00 0.00 3.02
323 377 6.761312 TCCGTTTAACAGAGGTATTCAGAAA 58.239 36.000 0.00 0.00 0.00 2.52
325 379 7.548075 TCCGTTTAACAGAGGTATTCAGAAATC 59.452 37.037 0.00 0.00 0.00 2.17
332 388 8.794335 ACAGAGGTATTCAGAAATCTTTTACC 57.206 34.615 1.45 1.45 0.00 2.85
337 393 5.873179 ATTCAGAAATCTTTTACCGCGAA 57.127 34.783 8.23 0.00 0.00 4.70
338 394 4.657075 TCAGAAATCTTTTACCGCGAAC 57.343 40.909 8.23 0.00 0.00 3.95
344 3527 0.509499 CTTTTACCGCGAACGAGCAA 59.491 50.000 8.23 0.00 43.93 3.91
362 3545 3.686726 AGCAAAGCATTTCTCGGAACTAG 59.313 43.478 0.00 0.00 35.03 2.57
363 3546 3.437049 GCAAAGCATTTCTCGGAACTAGT 59.563 43.478 0.00 0.00 35.03 2.57
365 3548 5.446073 GCAAAGCATTTCTCGGAACTAGTAC 60.446 44.000 0.00 0.00 35.03 2.73
366 3549 5.401531 AAGCATTTCTCGGAACTAGTACA 57.598 39.130 0.00 0.00 0.00 2.90
367 3550 5.401531 AGCATTTCTCGGAACTAGTACAA 57.598 39.130 0.00 0.00 0.00 2.41
368 3551 5.411781 AGCATTTCTCGGAACTAGTACAAG 58.588 41.667 0.00 0.00 0.00 3.16
369 3552 4.033014 GCATTTCTCGGAACTAGTACAAGC 59.967 45.833 0.00 0.00 0.00 4.01
370 3553 3.482722 TTCTCGGAACTAGTACAAGCG 57.517 47.619 0.00 0.00 0.00 4.68
371 3554 1.131883 TCTCGGAACTAGTACAAGCGC 59.868 52.381 0.00 0.00 0.00 5.92
372 3555 1.132643 CTCGGAACTAGTACAAGCGCT 59.867 52.381 2.64 2.64 0.00 5.92
375 3558 1.671850 GGAACTAGTACAAGCGCTGCA 60.672 52.381 12.58 0.00 0.00 4.41
410 3593 1.203523 GCTGACTGATGGTCTCGAAGT 59.796 52.381 0.00 0.00 44.74 3.01
413 3596 1.546476 GACTGATGGTCTCGAAGTGGT 59.454 52.381 0.00 0.00 41.46 4.16
560 3753 0.941542 CCGTGCGAAAGTGAAAAGGA 59.058 50.000 0.00 0.00 0.00 3.36
612 3809 1.060308 CGCGTGCAAGGTTATTCGG 59.940 57.895 0.00 0.00 0.00 4.30
780 4038 1.831106 ACGCAGAGAGAGAGAGAGAGA 59.169 52.381 0.00 0.00 0.00 3.10
784 4042 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
785 4043 4.501229 GCAGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
787 4045 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
788 4046 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
789 4047 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
790 4048 3.051803 AGAGAGAGAGAGAGAGAGGGAGA 60.052 52.174 0.00 0.00 0.00 3.71
791 4049 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
792 4050 1.771255 AGAGAGAGAGAGAGGGAGAGC 59.229 57.143 0.00 0.00 0.00 4.09
793 4051 0.469917 AGAGAGAGAGAGGGAGAGCG 59.530 60.000 0.00 0.00 0.00 5.03
794 4052 0.468226 GAGAGAGAGAGGGAGAGCGA 59.532 60.000 0.00 0.00 0.00 4.93
797 4055 1.226262 GAGAGAGGGAGAGCGAGGT 59.774 63.158 0.00 0.00 0.00 3.85
801 4059 2.043450 AGGGAGAGCGAGGTGAGG 60.043 66.667 0.00 0.00 0.00 3.86
960 4222 1.442857 GCTGTGAGGTGACGTCGAG 60.443 63.158 11.62 0.90 0.00 4.04
961 4223 1.442857 CTGTGAGGTGACGTCGAGC 60.443 63.158 11.62 9.78 0.00 5.03
964 4226 4.477975 GAGGTGACGTCGAGCCGG 62.478 72.222 11.62 0.00 0.00 6.13
1647 4945 2.413765 GACACCTCCGGCGAGATC 59.586 66.667 9.30 0.00 38.52 2.75
1655 4953 1.153823 CCGGCGAGATCGTTGAAGT 60.154 57.895 9.30 0.00 42.22 3.01
1785 5086 2.360475 AGCTTCTTTGGCGCCTCC 60.360 61.111 29.70 0.50 34.52 4.30
2158 5492 1.987855 GTCATGGAGGACACCCCGA 60.988 63.158 0.00 0.00 40.87 5.14
2241 5593 1.004891 AGGGGGATCCTTCCAGACC 59.995 63.158 21.21 9.33 45.47 3.85
3019 6431 1.454847 TGAACCAAAACCCAGCGCT 60.455 52.632 2.64 2.64 0.00 5.92
3055 6467 1.893801 GCCGGTGATAGTAGCCATAGT 59.106 52.381 1.90 0.00 0.00 2.12
3064 6476 7.982354 GGTGATAGTAGCCATAGTCATAAATCC 59.018 40.741 0.00 0.00 0.00 3.01
3070 6482 4.413520 AGCCATAGTCATAAATCCTGGTGT 59.586 41.667 0.00 0.00 0.00 4.16
3071 6483 5.606749 AGCCATAGTCATAAATCCTGGTGTA 59.393 40.000 0.00 0.00 0.00 2.90
3072 6484 6.273260 AGCCATAGTCATAAATCCTGGTGTAT 59.727 38.462 0.00 0.00 0.00 2.29
3073 6485 6.942576 GCCATAGTCATAAATCCTGGTGTATT 59.057 38.462 0.00 0.00 0.00 1.89
3074 6486 7.094634 GCCATAGTCATAAATCCTGGTGTATTG 60.095 40.741 0.00 0.00 0.00 1.90
3100 6512 6.868622 AGTATTGTTCTAAGCTCGATCTTGT 58.131 36.000 11.67 0.00 0.00 3.16
3109 6521 4.999751 AGCTCGATCTTGTTGTTTCTTC 57.000 40.909 0.00 0.00 0.00 2.87
3110 6522 3.430218 AGCTCGATCTTGTTGTTTCTTCG 59.570 43.478 0.00 0.00 0.00 3.79
3112 6524 4.692135 CTCGATCTTGTTGTTTCTTCGTG 58.308 43.478 0.00 0.00 0.00 4.35
3132 6544 1.372245 TTCATTTGGGGGTGGGGTGA 61.372 55.000 0.00 0.00 0.00 4.02
3133 6545 1.305213 CATTTGGGGGTGGGGTGAG 60.305 63.158 0.00 0.00 0.00 3.51
3134 6546 2.557181 ATTTGGGGGTGGGGTGAGG 61.557 63.158 0.00 0.00 0.00 3.86
3135 6547 4.542627 TTGGGGGTGGGGTGAGGT 62.543 66.667 0.00 0.00 0.00 3.85
3221 6635 1.858091 GCATGATCCGATCAGTCGTT 58.142 50.000 16.07 0.00 46.25 3.85
3222 6636 1.789464 GCATGATCCGATCAGTCGTTC 59.211 52.381 16.07 0.00 46.25 3.95
3223 6637 2.544694 GCATGATCCGATCAGTCGTTCT 60.545 50.000 16.07 0.00 46.25 3.01
3224 6638 3.711086 CATGATCCGATCAGTCGTTCTT 58.289 45.455 16.07 0.00 46.25 2.52
3232 6654 4.090642 CCGATCAGTCGTTCTTTTCTCTTG 59.909 45.833 0.00 0.00 46.25 3.02
3235 6657 6.362551 CGATCAGTCGTTCTTTTCTCTTGTTA 59.637 38.462 0.00 0.00 42.78 2.41
3237 6659 8.608844 ATCAGTCGTTCTTTTCTCTTGTTATT 57.391 30.769 0.00 0.00 0.00 1.40
3266 6688 2.035449 CAGTTGAGGTTCTGGACGTGTA 59.965 50.000 0.00 0.00 0.00 2.90
3285 6732 0.458543 ATACGAGGCACGAGCTTGTG 60.459 55.000 27.09 27.09 45.77 3.33
3310 6785 6.765036 GGCAATCTTGTCTCAATCTGATTCTA 59.235 38.462 0.00 0.00 0.00 2.10
3408 6894 3.766691 CCCCGACCCGTACAGGTG 61.767 72.222 5.23 0.00 41.42 4.00
3429 6915 3.069443 TGCTAGGTCTTTTTGCCCTTTTG 59.931 43.478 0.00 0.00 0.00 2.44
3430 6916 3.554960 GCTAGGTCTTTTTGCCCTTTTGG 60.555 47.826 0.00 0.00 39.97 3.28
3440 6926 2.406616 CCCTTTTGGATCGTGCGGG 61.407 63.158 0.00 0.00 44.07 6.13
3443 6929 0.447801 CTTTTGGATCGTGCGGGAAG 59.552 55.000 0.00 0.00 0.00 3.46
3444 6930 0.958382 TTTTGGATCGTGCGGGAAGG 60.958 55.000 0.00 0.00 0.00 3.46
3445 6931 1.832719 TTTGGATCGTGCGGGAAGGA 61.833 55.000 0.00 0.00 0.00 3.36
3446 6932 1.832719 TTGGATCGTGCGGGAAGGAA 61.833 55.000 0.00 0.00 0.00 3.36
3447 6933 1.521681 GGATCGTGCGGGAAGGAAG 60.522 63.158 0.00 0.00 0.00 3.46
3448 6934 1.521681 GATCGTGCGGGAAGGAAGG 60.522 63.158 0.00 0.00 0.00 3.46
3449 6935 1.956629 GATCGTGCGGGAAGGAAGGA 61.957 60.000 0.00 0.00 0.00 3.36
3465 6951 2.816777 AGGAATTCCTCTTGCTTCCC 57.183 50.000 21.89 0.00 44.77 3.97
3469 6955 3.425659 GAATTCCTCTTGCTTCCCAGTT 58.574 45.455 0.00 0.00 0.00 3.16
3474 7500 2.157738 CTCTTGCTTCCCAGTTCCAAG 58.842 52.381 0.00 0.00 35.44 3.61
3490 7516 1.065854 CCAAGCTTTGAGTCCCGAGAT 60.066 52.381 0.00 0.00 0.00 2.75
3491 7517 2.616510 CCAAGCTTTGAGTCCCGAGATT 60.617 50.000 0.00 0.00 0.00 2.40
3492 7518 2.393271 AGCTTTGAGTCCCGAGATTG 57.607 50.000 0.00 0.00 0.00 2.67
3493 7519 1.065854 AGCTTTGAGTCCCGAGATTGG 60.066 52.381 0.00 0.00 0.00 3.16
3615 7668 2.290705 ACGTGATTGGTCCTTAAAGGGG 60.291 50.000 0.00 0.00 35.59 4.79
3618 7671 2.310647 TGATTGGTCCTTAAAGGGGGTC 59.689 50.000 0.00 0.00 35.59 4.46
3619 7672 0.694196 TTGGTCCTTAAAGGGGGTCG 59.306 55.000 0.00 0.00 35.59 4.79
3620 7673 1.077930 GGTCCTTAAAGGGGGTCGC 60.078 63.158 0.00 0.00 35.59 5.19
3622 7675 1.914764 TCCTTAAAGGGGGTCGCGT 60.915 57.895 5.77 0.00 35.59 6.01
3623 7676 1.449070 CCTTAAAGGGGGTCGCGTC 60.449 63.158 5.77 0.00 0.00 5.19
3689 7742 3.371021 CGGGAGGCTCGCTCATAT 58.629 61.111 26.29 0.00 0.00 1.78
3690 7743 1.668294 CGGGAGGCTCGCTCATATT 59.332 57.895 26.29 0.00 0.00 1.28
3691 7744 0.389166 CGGGAGGCTCGCTCATATTC 60.389 60.000 26.29 1.75 0.00 1.75
3692 7745 0.036858 GGGAGGCTCGCTCATATTCC 60.037 60.000 22.89 4.68 0.00 3.01
3693 7746 0.036858 GGAGGCTCGCTCATATTCCC 60.037 60.000 8.69 0.00 0.00 3.97
3694 7747 0.972883 GAGGCTCGCTCATATTCCCT 59.027 55.000 0.00 0.00 0.00 4.20
3695 7748 0.972883 AGGCTCGCTCATATTCCCTC 59.027 55.000 0.00 0.00 0.00 4.30
3696 7749 0.036858 GGCTCGCTCATATTCCCTCC 60.037 60.000 0.00 0.00 0.00 4.30
3697 7750 0.389166 GCTCGCTCATATTCCCTCCG 60.389 60.000 0.00 0.00 0.00 4.63
3698 7751 0.389166 CTCGCTCATATTCCCTCCGC 60.389 60.000 0.00 0.00 0.00 5.54
3699 7752 0.827925 TCGCTCATATTCCCTCCGCT 60.828 55.000 0.00 0.00 0.00 5.52
3700 7753 0.668706 CGCTCATATTCCCTCCGCTG 60.669 60.000 0.00 0.00 0.00 5.18
3701 7754 0.321122 GCTCATATTCCCTCCGCTGG 60.321 60.000 0.00 0.00 0.00 4.85
3702 7755 0.321122 CTCATATTCCCTCCGCTGGC 60.321 60.000 0.00 0.00 0.00 4.85
3703 7756 1.302832 CATATTCCCTCCGCTGGCC 60.303 63.158 0.00 0.00 0.00 5.36
3704 7757 2.529744 ATATTCCCTCCGCTGGCCC 61.530 63.158 0.00 0.00 0.00 5.80
3768 7821 3.050275 GCCTCCGCGCTTGTTTCT 61.050 61.111 5.56 0.00 0.00 2.52
3769 7822 2.617274 GCCTCCGCGCTTGTTTCTT 61.617 57.895 5.56 0.00 0.00 2.52
3770 7823 1.949257 CCTCCGCGCTTGTTTCTTT 59.051 52.632 5.56 0.00 0.00 2.52
3771 7824 0.110192 CCTCCGCGCTTGTTTCTTTC 60.110 55.000 5.56 0.00 0.00 2.62
3772 7825 0.868406 CTCCGCGCTTGTTTCTTTCT 59.132 50.000 5.56 0.00 0.00 2.52
3773 7826 1.264288 CTCCGCGCTTGTTTCTTTCTT 59.736 47.619 5.56 0.00 0.00 2.52
3774 7827 1.263217 TCCGCGCTTGTTTCTTTCTTC 59.737 47.619 5.56 0.00 0.00 2.87
3775 7828 1.663161 CCGCGCTTGTTTCTTTCTTCC 60.663 52.381 5.56 0.00 0.00 3.46
3776 7829 1.264288 CGCGCTTGTTTCTTTCTTCCT 59.736 47.619 5.56 0.00 0.00 3.36
3777 7830 2.287009 CGCGCTTGTTTCTTTCTTCCTT 60.287 45.455 5.56 0.00 0.00 3.36
3778 7831 3.300857 GCGCTTGTTTCTTTCTTCCTTC 58.699 45.455 0.00 0.00 0.00 3.46
3779 7832 3.853676 GCGCTTGTTTCTTTCTTCCTTCC 60.854 47.826 0.00 0.00 0.00 3.46
3780 7833 3.565902 CGCTTGTTTCTTTCTTCCTTCCT 59.434 43.478 0.00 0.00 0.00 3.36
3781 7834 4.036852 CGCTTGTTTCTTTCTTCCTTCCTT 59.963 41.667 0.00 0.00 0.00 3.36
3782 7835 5.450550 CGCTTGTTTCTTTCTTCCTTCCTTT 60.451 40.000 0.00 0.00 0.00 3.11
3783 7836 5.980116 GCTTGTTTCTTTCTTCCTTCCTTTC 59.020 40.000 0.00 0.00 0.00 2.62
3784 7837 6.405842 GCTTGTTTCTTTCTTCCTTCCTTTCA 60.406 38.462 0.00 0.00 0.00 2.69
3785 7838 7.660030 TTGTTTCTTTCTTCCTTCCTTTCAT 57.340 32.000 0.00 0.00 0.00 2.57
3786 7839 7.042797 TGTTTCTTTCTTCCTTCCTTTCATG 57.957 36.000 0.00 0.00 0.00 3.07
3787 7840 5.712152 TTCTTTCTTCCTTCCTTTCATGC 57.288 39.130 0.00 0.00 0.00 4.06
3788 7841 3.753272 TCTTTCTTCCTTCCTTTCATGCG 59.247 43.478 0.00 0.00 0.00 4.73
3789 7842 1.453155 TCTTCCTTCCTTTCATGCGC 58.547 50.000 0.00 0.00 0.00 6.09
3790 7843 0.453390 CTTCCTTCCTTTCATGCGCC 59.547 55.000 4.18 0.00 0.00 6.53
3791 7844 1.305219 TTCCTTCCTTTCATGCGCCG 61.305 55.000 4.18 0.00 0.00 6.46
3792 7845 2.040544 CCTTCCTTTCATGCGCCGT 61.041 57.895 4.18 0.00 0.00 5.68
3793 7846 1.586154 CCTTCCTTTCATGCGCCGTT 61.586 55.000 4.18 0.00 0.00 4.44
3794 7847 0.179189 CTTCCTTTCATGCGCCGTTC 60.179 55.000 4.18 0.00 0.00 3.95
3795 7848 0.605319 TTCCTTTCATGCGCCGTTCT 60.605 50.000 4.18 0.00 0.00 3.01
3796 7849 1.019278 TCCTTTCATGCGCCGTTCTC 61.019 55.000 4.18 0.00 0.00 2.87
3797 7850 1.298157 CCTTTCATGCGCCGTTCTCA 61.298 55.000 4.18 0.00 0.00 3.27
3798 7851 0.729116 CTTTCATGCGCCGTTCTCAT 59.271 50.000 4.18 0.00 0.00 2.90
3799 7852 0.726827 TTTCATGCGCCGTTCTCATC 59.273 50.000 4.18 0.00 0.00 2.92
3800 7853 1.420641 TTCATGCGCCGTTCTCATCG 61.421 55.000 4.18 0.00 0.00 3.84
3807 7860 3.193757 CGTTCTCATCGGACCGGA 58.806 61.111 15.25 3.12 0.00 5.14
3808 7861 1.226603 CGTTCTCATCGGACCGGAC 60.227 63.158 15.25 0.00 0.00 4.79
3809 7862 1.888018 GTTCTCATCGGACCGGACA 59.112 57.895 15.25 0.00 0.00 4.02
3810 7863 0.179134 GTTCTCATCGGACCGGACAG 60.179 60.000 15.25 1.98 0.00 3.51
3811 7864 1.945354 TTCTCATCGGACCGGACAGC 61.945 60.000 15.25 0.00 0.00 4.40
3812 7865 2.678580 TCATCGGACCGGACAGCA 60.679 61.111 15.25 0.00 0.00 4.41
3813 7866 2.202797 CATCGGACCGGACAGCAG 60.203 66.667 15.25 0.00 0.00 4.24
3814 7867 2.680352 ATCGGACCGGACAGCAGT 60.680 61.111 15.25 0.00 0.00 4.40
3815 7868 3.006756 ATCGGACCGGACAGCAGTG 62.007 63.158 15.25 0.00 0.00 3.66
3817 7870 4.314440 GGACCGGACAGCAGTGCA 62.314 66.667 19.20 0.00 35.57 4.57
3818 7871 2.280797 GACCGGACAGCAGTGCAA 60.281 61.111 19.20 0.00 35.57 4.08
3819 7872 2.281070 ACCGGACAGCAGTGCAAG 60.281 61.111 19.20 11.98 35.57 4.01
3820 7873 2.281070 CCGGACAGCAGTGCAAGT 60.281 61.111 19.20 15.41 35.57 3.16
3821 7874 2.610694 CCGGACAGCAGTGCAAGTG 61.611 63.158 19.20 9.68 41.28 3.16
3822 7875 1.889105 CGGACAGCAGTGCAAGTGT 60.889 57.895 19.20 13.21 40.18 3.55
3823 7876 1.650912 GGACAGCAGTGCAAGTGTG 59.349 57.895 19.20 8.88 40.18 3.82
3824 7877 1.097547 GGACAGCAGTGCAAGTGTGT 61.098 55.000 19.20 12.41 40.18 3.72
3825 7878 0.028505 GACAGCAGTGCAAGTGTGTG 59.971 55.000 19.20 7.32 40.18 3.82
3826 7879 1.298863 CAGCAGTGCAAGTGTGTGC 60.299 57.895 19.20 0.00 45.15 4.57
3827 7880 1.452651 AGCAGTGCAAGTGTGTGCT 60.453 52.632 19.20 0.00 45.17 4.40
3828 7881 1.033746 AGCAGTGCAAGTGTGTGCTT 61.034 50.000 19.20 0.00 41.72 3.91
3829 7882 0.868602 GCAGTGCAAGTGTGTGCTTG 60.869 55.000 11.09 1.84 45.17 4.01
3830 7883 0.452987 CAGTGCAAGTGTGTGCTTGT 59.547 50.000 7.51 0.00 45.47 3.16
3831 7884 1.135315 CAGTGCAAGTGTGTGCTTGTT 60.135 47.619 7.51 0.00 45.47 2.83
3832 7885 1.135315 AGTGCAAGTGTGTGCTTGTTG 60.135 47.619 7.51 0.00 45.47 3.33
3833 7886 0.887247 TGCAAGTGTGTGCTTGTTGT 59.113 45.000 7.51 0.00 45.47 3.32
3834 7887 1.270971 GCAAGTGTGTGCTTGTTGTG 58.729 50.000 7.51 0.00 45.47 3.33
3835 7888 1.135431 GCAAGTGTGTGCTTGTTGTGA 60.135 47.619 7.51 0.00 45.47 3.58
3836 7889 2.789208 CAAGTGTGTGCTTGTTGTGAG 58.211 47.619 0.00 0.00 40.52 3.51
3837 7890 0.734889 AGTGTGTGCTTGTTGTGAGC 59.265 50.000 0.00 0.00 40.53 4.26
3838 7891 0.248621 GTGTGTGCTTGTTGTGAGCC 60.249 55.000 0.00 0.00 39.38 4.70
3839 7892 1.009675 GTGTGCTTGTTGTGAGCCG 60.010 57.895 0.00 0.00 39.38 5.52
3840 7893 2.050985 GTGCTTGTTGTGAGCCGC 60.051 61.111 0.00 0.00 39.38 6.53
3841 7894 2.203195 TGCTTGTTGTGAGCCGCT 60.203 55.556 0.00 0.00 39.38 5.52
3842 7895 2.253452 GCTTGTTGTGAGCCGCTG 59.747 61.111 0.00 0.00 34.06 5.18
3843 7896 2.253452 CTTGTTGTGAGCCGCTGC 59.747 61.111 0.00 0.00 37.95 5.25
3854 7907 2.356313 CCGCTGCTCTGTGTCGTT 60.356 61.111 0.00 0.00 0.00 3.85
3855 7908 2.661566 CCGCTGCTCTGTGTCGTTG 61.662 63.158 0.00 0.00 0.00 4.10
3856 7909 1.951130 CGCTGCTCTGTGTCGTTGT 60.951 57.895 0.00 0.00 0.00 3.32
3857 7910 1.566563 GCTGCTCTGTGTCGTTGTG 59.433 57.895 0.00 0.00 0.00 3.33
3858 7911 1.154205 GCTGCTCTGTGTCGTTGTGT 61.154 55.000 0.00 0.00 0.00 3.72
3859 7912 1.290203 CTGCTCTGTGTCGTTGTGTT 58.710 50.000 0.00 0.00 0.00 3.32
3860 7913 1.004610 CTGCTCTGTGTCGTTGTGTTG 60.005 52.381 0.00 0.00 0.00 3.33
3861 7914 1.006832 GCTCTGTGTCGTTGTGTTGT 58.993 50.000 0.00 0.00 0.00 3.32
3862 7915 1.267532 GCTCTGTGTCGTTGTGTTGTG 60.268 52.381 0.00 0.00 0.00 3.33
3863 7916 0.724549 TCTGTGTCGTTGTGTTGTGC 59.275 50.000 0.00 0.00 0.00 4.57
3864 7917 0.586256 CTGTGTCGTTGTGTTGTGCG 60.586 55.000 0.00 0.00 0.00 5.34
3865 7918 1.932564 GTGTCGTTGTGTTGTGCGC 60.933 57.895 0.00 0.00 0.00 6.09
3866 7919 2.351888 GTCGTTGTGTTGTGCGCC 60.352 61.111 4.18 0.00 0.00 6.53
3867 7920 2.512745 TCGTTGTGTTGTGCGCCT 60.513 55.556 4.18 0.00 0.00 5.52
3868 7921 2.352229 CGTTGTGTTGTGCGCCTG 60.352 61.111 4.18 0.00 0.00 4.85
3869 7922 2.655044 GTTGTGTTGTGCGCCTGC 60.655 61.111 4.18 0.00 43.20 4.85
3894 7947 4.659172 CCCACCGGCAGAGGCAAA 62.659 66.667 0.00 0.00 43.71 3.68
3895 7948 3.058160 CCACCGGCAGAGGCAAAG 61.058 66.667 0.00 0.00 43.71 2.77
3896 7949 2.032528 CACCGGCAGAGGCAAAGA 59.967 61.111 0.00 0.00 43.71 2.52
3897 7950 2.037136 CACCGGCAGAGGCAAAGAG 61.037 63.158 0.00 0.00 43.71 2.85
3898 7951 2.348998 CCGGCAGAGGCAAAGAGT 59.651 61.111 0.00 0.00 43.71 3.24
3899 7952 1.302832 CCGGCAGAGGCAAAGAGTT 60.303 57.895 0.00 0.00 43.71 3.01
3900 7953 0.890996 CCGGCAGAGGCAAAGAGTTT 60.891 55.000 0.00 0.00 43.71 2.66
3901 7954 0.239347 CGGCAGAGGCAAAGAGTTTG 59.761 55.000 0.00 0.00 43.71 2.93
3902 7955 0.600057 GGCAGAGGCAAAGAGTTTGG 59.400 55.000 1.80 0.00 43.71 3.28
3903 7956 0.600057 GCAGAGGCAAAGAGTTTGGG 59.400 55.000 1.80 0.00 40.94 4.12
3904 7957 0.600057 CAGAGGCAAAGAGTTTGGGC 59.400 55.000 1.80 0.00 40.94 5.36
3905 7958 0.540597 AGAGGCAAAGAGTTTGGGCC 60.541 55.000 0.00 0.00 44.92 5.80
3906 7959 1.533994 AGGCAAAGAGTTTGGGCCC 60.534 57.895 17.59 17.59 45.72 5.80
3907 7960 2.583441 GGCAAAGAGTTTGGGCCCC 61.583 63.158 22.27 3.22 40.94 5.80
3908 7961 2.583441 GCAAAGAGTTTGGGCCCCC 61.583 63.158 22.27 7.28 40.94 5.40
3909 7962 2.117423 AAAGAGTTTGGGCCCCCG 59.883 61.111 22.27 0.00 39.42 5.73
3910 7963 3.523374 AAAGAGTTTGGGCCCCCGG 62.523 63.158 22.27 0.00 39.42 5.73
3945 7998 4.687215 TCGCTGCTCTGCCGCTTT 62.687 61.111 0.00 0.00 36.66 3.51
3946 7999 3.730761 CGCTGCTCTGCCGCTTTT 61.731 61.111 0.00 0.00 36.66 2.27
3947 8000 2.126580 GCTGCTCTGCCGCTTTTG 60.127 61.111 0.00 0.00 35.94 2.44
3948 8001 2.912624 GCTGCTCTGCCGCTTTTGT 61.913 57.895 0.00 0.00 35.94 2.83
3949 8002 1.656441 CTGCTCTGCCGCTTTTGTT 59.344 52.632 0.00 0.00 0.00 2.83
3950 8003 0.386478 CTGCTCTGCCGCTTTTGTTC 60.386 55.000 0.00 0.00 0.00 3.18
3951 8004 0.819259 TGCTCTGCCGCTTTTGTTCT 60.819 50.000 0.00 0.00 0.00 3.01
3952 8005 1.156736 GCTCTGCCGCTTTTGTTCTA 58.843 50.000 0.00 0.00 0.00 2.10
3953 8006 1.129437 GCTCTGCCGCTTTTGTTCTAG 59.871 52.381 0.00 0.00 0.00 2.43
3954 8007 1.129437 CTCTGCCGCTTTTGTTCTAGC 59.871 52.381 0.00 0.00 0.00 3.42
3959 8012 1.134694 GCTTTTGTTCTAGCGGCCG 59.865 57.895 24.05 24.05 0.00 6.13
3960 8013 1.296056 GCTTTTGTTCTAGCGGCCGA 61.296 55.000 33.48 8.14 0.00 5.54
3961 8014 1.153353 CTTTTGTTCTAGCGGCCGAA 58.847 50.000 33.48 15.61 0.00 4.30
3962 8015 1.737793 CTTTTGTTCTAGCGGCCGAAT 59.262 47.619 33.48 19.61 0.00 3.34
3963 8016 2.676632 TTTGTTCTAGCGGCCGAATA 57.323 45.000 33.48 19.69 0.00 1.75
3964 8017 2.218953 TTGTTCTAGCGGCCGAATAG 57.781 50.000 33.48 27.80 0.00 1.73
3965 8018 0.249322 TGTTCTAGCGGCCGAATAGC 60.249 55.000 33.48 17.05 0.00 2.97
3966 8019 1.007734 TTCTAGCGGCCGAATAGCG 60.008 57.895 33.48 10.18 40.47 4.26
3967 8020 3.106407 CTAGCGGCCGAATAGCGC 61.106 66.667 33.48 11.84 39.11 5.92
3968 8021 4.657824 TAGCGGCCGAATAGCGCC 62.658 66.667 33.48 8.41 39.11 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.276926 AGAAGCTTTTGTTGATGTGAGGTC 59.723 41.667 0.00 0.00 0.00 3.85
93 104 6.661805 GGGTTTTTGTGGATCCAGATAGTTTA 59.338 38.462 16.81 0.00 0.00 2.01
94 105 5.480422 GGGTTTTTGTGGATCCAGATAGTTT 59.520 40.000 16.81 0.00 0.00 2.66
107 118 2.338577 TTTGCATGGGGTTTTTGTGG 57.661 45.000 0.00 0.00 0.00 4.17
134 145 0.459237 GACTCACAGTCGCAGGATGG 60.459 60.000 0.00 0.00 35.28 3.51
182 201 0.674895 CCTCTGCAGAAAAGACCCCG 60.675 60.000 18.85 2.23 0.00 5.73
200 254 4.579869 TGAGCAAAGAAACAGAGGTATCC 58.420 43.478 0.00 0.00 0.00 2.59
208 262 4.024556 CACTGGTACTGAGCAAAGAAACAG 60.025 45.833 0.00 0.00 36.58 3.16
211 265 2.878406 GCACTGGTACTGAGCAAAGAAA 59.122 45.455 0.00 0.00 42.55 2.52
220 274 0.317160 CGACCTTGCACTGGTACTGA 59.683 55.000 10.23 0.00 38.03 3.41
230 284 2.028112 AGCTGAAATACTCGACCTTGCA 60.028 45.455 0.00 0.00 0.00 4.08
231 285 2.622436 AGCTGAAATACTCGACCTTGC 58.378 47.619 0.00 0.00 0.00 4.01
238 292 4.149046 GCTCGGAATAAGCTGAAATACTCG 59.851 45.833 0.00 0.00 36.80 4.18
239 293 5.583969 GCTCGGAATAAGCTGAAATACTC 57.416 43.478 0.00 0.00 36.80 2.59
257 311 0.814457 ACTTCTCCTACTGCAGCTCG 59.186 55.000 15.27 1.72 0.00 5.03
259 313 2.024846 TCCTACTTCTCCTACTGCAGCT 60.025 50.000 15.27 3.67 0.00 4.24
260 314 2.360801 CTCCTACTTCTCCTACTGCAGC 59.639 54.545 15.27 0.00 0.00 5.25
261 315 3.626930 ACTCCTACTTCTCCTACTGCAG 58.373 50.000 13.48 13.48 0.00 4.41
262 316 3.741245 ACTCCTACTTCTCCTACTGCA 57.259 47.619 0.00 0.00 0.00 4.41
263 317 5.828859 TGAATACTCCTACTTCTCCTACTGC 59.171 44.000 0.00 0.00 0.00 4.40
264 318 6.829298 TGTGAATACTCCTACTTCTCCTACTG 59.171 42.308 0.00 0.00 0.00 2.74
265 319 6.971340 TGTGAATACTCCTACTTCTCCTACT 58.029 40.000 0.00 0.00 0.00 2.57
266 320 7.502895 TGATGTGAATACTCCTACTTCTCCTAC 59.497 40.741 0.00 0.00 0.00 3.18
267 321 7.583625 TGATGTGAATACTCCTACTTCTCCTA 58.416 38.462 0.00 0.00 0.00 2.94
268 322 6.436027 TGATGTGAATACTCCTACTTCTCCT 58.564 40.000 0.00 0.00 0.00 3.69
269 323 6.716934 TGATGTGAATACTCCTACTTCTCC 57.283 41.667 0.00 0.00 0.00 3.71
270 324 6.183360 TGCTGATGTGAATACTCCTACTTCTC 60.183 42.308 0.00 0.00 0.00 2.87
271 325 5.658634 TGCTGATGTGAATACTCCTACTTCT 59.341 40.000 0.00 0.00 0.00 2.85
272 326 5.907207 TGCTGATGTGAATACTCCTACTTC 58.093 41.667 0.00 0.00 0.00 3.01
273 327 5.423610 ACTGCTGATGTGAATACTCCTACTT 59.576 40.000 0.00 0.00 0.00 2.24
274 328 4.959210 ACTGCTGATGTGAATACTCCTACT 59.041 41.667 0.00 0.00 0.00 2.57
275 329 5.068460 AGACTGCTGATGTGAATACTCCTAC 59.932 44.000 0.00 0.00 0.00 3.18
276 330 5.204292 AGACTGCTGATGTGAATACTCCTA 58.796 41.667 0.00 0.00 0.00 2.94
277 331 4.029520 AGACTGCTGATGTGAATACTCCT 58.970 43.478 0.00 0.00 0.00 3.69
278 332 4.367450 GAGACTGCTGATGTGAATACTCC 58.633 47.826 0.00 0.00 0.00 3.85
279 333 4.367450 GGAGACTGCTGATGTGAATACTC 58.633 47.826 0.00 0.00 0.00 2.59
280 334 3.181482 CGGAGACTGCTGATGTGAATACT 60.181 47.826 0.00 0.00 0.00 2.12
281 335 3.119291 CGGAGACTGCTGATGTGAATAC 58.881 50.000 0.00 0.00 0.00 1.89
282 336 2.760650 ACGGAGACTGCTGATGTGAATA 59.239 45.455 0.00 0.00 0.00 1.75
283 337 1.552337 ACGGAGACTGCTGATGTGAAT 59.448 47.619 0.00 0.00 0.00 2.57
284 338 0.969149 ACGGAGACTGCTGATGTGAA 59.031 50.000 0.00 0.00 0.00 3.18
285 339 0.969149 AACGGAGACTGCTGATGTGA 59.031 50.000 0.00 0.00 0.00 3.58
286 340 1.800805 AAACGGAGACTGCTGATGTG 58.199 50.000 0.00 0.00 0.00 3.21
287 341 3.244078 TGTTAAACGGAGACTGCTGATGT 60.244 43.478 0.00 0.00 0.00 3.06
301 355 8.480643 AGATTTCTGAATACCTCTGTTAAACG 57.519 34.615 0.00 0.00 0.00 3.60
307 361 7.549488 CGGTAAAAGATTTCTGAATACCTCTGT 59.451 37.037 11.68 0.00 32.00 3.41
313 367 6.340537 TCGCGGTAAAAGATTTCTGAATAC 57.659 37.500 6.13 0.00 0.00 1.89
314 368 6.454583 CGTTCGCGGTAAAAGATTTCTGAATA 60.455 38.462 6.13 0.00 36.88 1.75
315 369 5.628134 GTTCGCGGTAAAAGATTTCTGAAT 58.372 37.500 6.13 0.00 0.00 2.57
317 371 3.122278 CGTTCGCGGTAAAAGATTTCTGA 59.878 43.478 6.13 0.00 36.88 3.27
318 372 3.122278 TCGTTCGCGGTAAAAGATTTCTG 59.878 43.478 6.13 0.00 41.70 3.02
319 373 3.319755 TCGTTCGCGGTAAAAGATTTCT 58.680 40.909 6.13 0.00 41.70 2.52
320 374 3.656618 CTCGTTCGCGGTAAAAGATTTC 58.343 45.455 6.13 0.00 41.70 2.17
321 375 2.159747 GCTCGTTCGCGGTAAAAGATTT 60.160 45.455 6.13 0.00 41.70 2.17
322 376 1.392510 GCTCGTTCGCGGTAAAAGATT 59.607 47.619 6.13 0.00 41.70 2.40
323 377 0.997196 GCTCGTTCGCGGTAAAAGAT 59.003 50.000 6.13 0.00 41.70 2.40
325 379 0.509499 TTGCTCGTTCGCGGTAAAAG 59.491 50.000 6.13 0.00 41.70 2.27
332 388 0.725784 AAATGCTTTGCTCGTTCGCG 60.726 50.000 0.00 0.00 42.98 5.87
337 393 0.798776 CCGAGAAATGCTTTGCTCGT 59.201 50.000 30.33 0.00 46.28 4.18
338 394 1.078709 TCCGAGAAATGCTTTGCTCG 58.921 50.000 27.73 27.73 47.00 5.03
344 3527 5.401531 TGTACTAGTTCCGAGAAATGCTT 57.598 39.130 0.00 0.00 0.00 3.91
362 3545 2.174349 GCAGTGCAGCGCTTGTAC 59.826 61.111 7.50 13.42 42.10 2.90
380 3563 0.239347 ATCAGTCAGCTTTGCGCAAC 59.761 50.000 24.99 12.90 42.61 4.17
382 3565 1.579964 CCATCAGTCAGCTTTGCGCA 61.580 55.000 5.66 5.66 42.61 6.09
393 3576 1.546476 ACCACTTCGAGACCATCAGTC 59.454 52.381 0.00 0.00 46.71 3.51
395 3578 1.404717 CCACCACTTCGAGACCATCAG 60.405 57.143 0.00 0.00 0.00 2.90
410 3593 1.609239 CCATCTAGCCAAGCCACCA 59.391 57.895 0.00 0.00 0.00 4.17
413 3596 0.548031 CTTCCCATCTAGCCAAGCCA 59.452 55.000 0.00 0.00 0.00 4.75
434 3617 1.795768 TTGCTCTTTCCTGCTACACG 58.204 50.000 0.00 0.00 0.00 4.49
552 3745 0.249114 GCGCCCGTTTTTCCTTTTCA 60.249 50.000 0.00 0.00 0.00 2.69
560 3753 2.415426 CACCTTGCGCCCGTTTTT 59.585 55.556 4.18 0.00 0.00 1.94
612 3809 5.360714 TGGCTGATCCAAAGGTGATTATTTC 59.639 40.000 0.00 0.00 43.21 2.17
711 3969 2.754664 CTTCTTGGGCTCCGTGGCTT 62.755 60.000 0.00 0.00 41.48 4.35
780 4038 1.077068 CACCTCGCTCTCCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
784 4042 2.043450 CCTCACCTCGCTCTCCCT 60.043 66.667 0.00 0.00 0.00 4.20
785 4043 3.151022 CCCTCACCTCGCTCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
787 4045 2.781158 GCTCCCTCACCTCGCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
788 4046 2.757917 GCTCCCTCACCTCGCTCT 60.758 66.667 0.00 0.00 0.00 4.09
789 4047 2.757917 AGCTCCCTCACCTCGCTC 60.758 66.667 0.00 0.00 0.00 5.03
790 4048 2.757917 GAGCTCCCTCACCTCGCT 60.758 66.667 0.87 0.00 38.03 4.93
791 4049 4.200283 CGAGCTCCCTCACCTCGC 62.200 72.222 8.47 0.00 41.41 5.03
793 4051 3.844090 GGCGAGCTCCCTCACCTC 61.844 72.222 8.47 0.00 37.33 3.85
895 4157 1.076727 TTCTGGGAGGAGTGAGCGA 59.923 57.895 0.00 0.00 0.00 4.93
929 4191 0.249531 TCACAGCGCTCCAACGTTTA 60.250 50.000 7.13 0.00 34.88 2.01
987 4255 4.101790 GACATTGCCGTGCCCGTG 62.102 66.667 0.00 0.00 0.00 4.94
1257 4543 4.250305 AAGGACTTGCACCGCCGT 62.250 61.111 0.00 0.00 0.00 5.68
1595 4893 1.217882 CTCGAACACCGGCATTATCC 58.782 55.000 0.00 0.00 39.14 2.59
1647 4945 0.443869 CATTGGGCTCGACTTCAACG 59.556 55.000 0.00 0.00 0.00 4.10
1668 4966 2.514824 GCCTTGACATCCCGAGCC 60.515 66.667 0.00 0.00 0.00 4.70
1731 5029 2.668212 TCTTTCGGCGGTGGCTTG 60.668 61.111 7.21 0.00 39.81 4.01
1737 5035 0.602905 CTTTCAGGTCTTTCGGCGGT 60.603 55.000 7.21 0.00 0.00 5.68
1743 5041 2.933260 GGCGATCTCTTTCAGGTCTTTC 59.067 50.000 0.00 0.00 28.51 2.62
1785 5086 0.040958 GCCACTTCTTGCTGAACACG 60.041 55.000 0.00 0.00 0.00 4.49
2010 5344 4.849329 AAGCCGGCGTCGTCGATC 62.849 66.667 22.65 11.96 39.71 3.69
2241 5593 6.316640 TGGAAGAATCGAAGTAGTAGTCTCTG 59.683 42.308 0.00 0.00 0.00 3.35
2433 5791 1.743252 GGAGTTGGAGCTGAAGCCG 60.743 63.158 0.00 0.00 43.38 5.52
2994 6404 3.815809 CTGGGTTTTGGTTCAGTACAGA 58.184 45.455 0.00 0.00 0.00 3.41
3064 6476 8.818057 GCTTAGAACAATACTACAATACACCAG 58.182 37.037 0.00 0.00 0.00 4.00
3070 6482 9.894783 GATCGAGCTTAGAACAATACTACAATA 57.105 33.333 0.00 0.00 0.00 1.90
3071 6483 8.634444 AGATCGAGCTTAGAACAATACTACAAT 58.366 33.333 0.00 0.00 0.00 2.71
3072 6484 7.997482 AGATCGAGCTTAGAACAATACTACAA 58.003 34.615 0.00 0.00 0.00 2.41
3073 6485 7.569639 AGATCGAGCTTAGAACAATACTACA 57.430 36.000 0.00 0.00 0.00 2.74
3074 6486 7.916450 ACAAGATCGAGCTTAGAACAATACTAC 59.084 37.037 16.70 0.00 0.00 2.73
3084 6496 5.784177 AGAAACAACAAGATCGAGCTTAGA 58.216 37.500 16.70 0.00 0.00 2.10
3100 6512 4.440802 CCCCAAATGAACACGAAGAAACAA 60.441 41.667 0.00 0.00 0.00 2.83
3109 6521 1.531739 CCCACCCCCAAATGAACACG 61.532 60.000 0.00 0.00 0.00 4.49
3110 6522 1.191489 CCCCACCCCCAAATGAACAC 61.191 60.000 0.00 0.00 0.00 3.32
3112 6524 1.157513 ACCCCACCCCCAAATGAAC 59.842 57.895 0.00 0.00 0.00 3.18
3224 6638 9.897744 CAACTGCTGATTTAATAACAAGAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
3232 6654 7.965107 CAGAACCTCAACTGCTGATTTAATAAC 59.035 37.037 0.00 0.00 32.14 1.89
3235 6657 5.416952 CCAGAACCTCAACTGCTGATTTAAT 59.583 40.000 0.00 0.00 32.14 1.40
3237 6659 4.041567 TCCAGAACCTCAACTGCTGATTTA 59.958 41.667 0.00 0.00 32.14 1.40
3266 6688 0.458543 CACAAGCTCGTGCCTCGTAT 60.459 55.000 5.73 0.00 40.80 3.06
3285 6732 5.589452 AGAATCAGATTGAGACAAGATTGCC 59.411 40.000 0.00 0.00 0.00 4.52
3395 6881 0.969409 ACCTAGCACCTGTACGGGTC 60.969 60.000 24.09 17.38 37.52 4.46
3396 6882 0.969409 GACCTAGCACCTGTACGGGT 60.969 60.000 21.29 21.29 40.73 5.28
3429 6915 1.521681 CTTCCTTCCCGCACGATCC 60.522 63.158 0.00 0.00 0.00 3.36
3430 6916 1.521681 CCTTCCTTCCCGCACGATC 60.522 63.158 0.00 0.00 0.00 3.69
3447 6933 2.291217 ACTGGGAAGCAAGAGGAATTCC 60.291 50.000 17.31 17.31 40.44 3.01
3448 6934 3.078891 ACTGGGAAGCAAGAGGAATTC 57.921 47.619 0.00 0.00 0.00 2.17
3449 6935 3.425659 GAACTGGGAAGCAAGAGGAATT 58.574 45.455 0.00 0.00 0.00 2.17
3459 6945 1.000171 CAAAGCTTGGAACTGGGAAGC 60.000 52.381 0.00 0.00 42.04 3.86
3465 6951 1.882623 GGGACTCAAAGCTTGGAACTG 59.117 52.381 4.77 0.00 0.00 3.16
3469 6955 0.321671 CTCGGGACTCAAAGCTTGGA 59.678 55.000 2.88 2.88 0.00 3.53
3474 7500 1.373570 CCAATCTCGGGACTCAAAGC 58.626 55.000 0.00 0.00 0.00 3.51
3490 7516 2.364317 CGCTCTCCCCTCTCCCAA 60.364 66.667 0.00 0.00 0.00 4.12
3491 7517 3.673597 ACGCTCTCCCCTCTCCCA 61.674 66.667 0.00 0.00 0.00 4.37
3492 7518 3.151022 CACGCTCTCCCCTCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
3493 7519 2.043852 TCACGCTCTCCCCTCTCC 60.044 66.667 0.00 0.00 0.00 3.71
3494 7520 1.040339 ATGTCACGCTCTCCCCTCTC 61.040 60.000 0.00 0.00 0.00 3.20
3495 7521 1.000993 ATGTCACGCTCTCCCCTCT 59.999 57.895 0.00 0.00 0.00 3.69
3496 7522 1.142748 CATGTCACGCTCTCCCCTC 59.857 63.158 0.00 0.00 0.00 4.30
3497 7523 2.362369 CCATGTCACGCTCTCCCCT 61.362 63.158 0.00 0.00 0.00 4.79
3498 7524 2.187946 CCATGTCACGCTCTCCCC 59.812 66.667 0.00 0.00 0.00 4.81
3499 7525 1.153549 GTCCATGTCACGCTCTCCC 60.154 63.158 0.00 0.00 0.00 4.30
3539 7571 1.961277 CGTTGGACACCAGTGCTCC 60.961 63.158 10.61 10.61 36.96 4.70
3541 7573 1.095228 CAACGTTGGACACCAGTGCT 61.095 55.000 20.71 0.00 36.96 4.40
3542 7574 1.355210 CAACGTTGGACACCAGTGC 59.645 57.895 20.71 0.00 33.81 4.40
3674 7727 0.036858 GGGAATATGAGCGAGCCTCC 60.037 60.000 0.00 0.00 39.98 4.30
3675 7728 0.972883 AGGGAATATGAGCGAGCCTC 59.027 55.000 0.00 0.00 41.15 4.70
3676 7729 0.972883 GAGGGAATATGAGCGAGCCT 59.027 55.000 0.00 0.00 0.00 4.58
3677 7730 0.036858 GGAGGGAATATGAGCGAGCC 60.037 60.000 0.00 0.00 0.00 4.70
3678 7731 0.389166 CGGAGGGAATATGAGCGAGC 60.389 60.000 0.00 0.00 0.00 5.03
3679 7732 0.389166 GCGGAGGGAATATGAGCGAG 60.389 60.000 0.00 0.00 0.00 5.03
3680 7733 0.827925 AGCGGAGGGAATATGAGCGA 60.828 55.000 0.00 0.00 0.00 4.93
3681 7734 0.668706 CAGCGGAGGGAATATGAGCG 60.669 60.000 0.00 0.00 0.00 5.03
3682 7735 0.321122 CCAGCGGAGGGAATATGAGC 60.321 60.000 0.00 0.00 0.00 4.26
3683 7736 0.321122 GCCAGCGGAGGGAATATGAG 60.321 60.000 0.00 0.00 0.00 2.90
3684 7737 1.754745 GCCAGCGGAGGGAATATGA 59.245 57.895 0.00 0.00 0.00 2.15
3685 7738 1.302832 GGCCAGCGGAGGGAATATG 60.303 63.158 0.00 0.00 0.00 1.78
3686 7739 2.529744 GGGCCAGCGGAGGGAATAT 61.530 63.158 4.39 0.00 0.00 1.28
3687 7740 3.168528 GGGCCAGCGGAGGGAATA 61.169 66.667 4.39 0.00 0.00 1.75
3751 7804 2.130073 AAAGAAACAAGCGCGGAGGC 62.130 55.000 8.83 0.00 0.00 4.70
3752 7805 0.110192 GAAAGAAACAAGCGCGGAGG 60.110 55.000 8.83 0.00 0.00 4.30
3753 7806 0.868406 AGAAAGAAACAAGCGCGGAG 59.132 50.000 8.83 0.00 0.00 4.63
3754 7807 1.263217 GAAGAAAGAAACAAGCGCGGA 59.737 47.619 8.83 0.00 0.00 5.54
3755 7808 1.663161 GGAAGAAAGAAACAAGCGCGG 60.663 52.381 8.83 0.00 0.00 6.46
3756 7809 1.264288 AGGAAGAAAGAAACAAGCGCG 59.736 47.619 0.00 0.00 0.00 6.86
3757 7810 3.300857 GAAGGAAGAAAGAAACAAGCGC 58.699 45.455 0.00 0.00 0.00 5.92
3758 7811 3.565902 AGGAAGGAAGAAAGAAACAAGCG 59.434 43.478 0.00 0.00 0.00 4.68
3759 7812 5.521906 AAGGAAGGAAGAAAGAAACAAGC 57.478 39.130 0.00 0.00 0.00 4.01
3760 7813 7.100458 TGAAAGGAAGGAAGAAAGAAACAAG 57.900 36.000 0.00 0.00 0.00 3.16
3761 7814 7.491682 CATGAAAGGAAGGAAGAAAGAAACAA 58.508 34.615 0.00 0.00 0.00 2.83
3762 7815 6.461509 GCATGAAAGGAAGGAAGAAAGAAACA 60.462 38.462 0.00 0.00 0.00 2.83
3763 7816 5.923114 GCATGAAAGGAAGGAAGAAAGAAAC 59.077 40.000 0.00 0.00 0.00 2.78
3764 7817 5.278463 CGCATGAAAGGAAGGAAGAAAGAAA 60.278 40.000 0.00 0.00 0.00 2.52
3765 7818 4.216257 CGCATGAAAGGAAGGAAGAAAGAA 59.784 41.667 0.00 0.00 0.00 2.52
3766 7819 3.753272 CGCATGAAAGGAAGGAAGAAAGA 59.247 43.478 0.00 0.00 0.00 2.52
3767 7820 3.671702 GCGCATGAAAGGAAGGAAGAAAG 60.672 47.826 0.30 0.00 0.00 2.62
3768 7821 2.228822 GCGCATGAAAGGAAGGAAGAAA 59.771 45.455 0.30 0.00 0.00 2.52
3769 7822 1.812571 GCGCATGAAAGGAAGGAAGAA 59.187 47.619 0.30 0.00 0.00 2.52
3770 7823 1.453155 GCGCATGAAAGGAAGGAAGA 58.547 50.000 0.30 0.00 0.00 2.87
3771 7824 0.453390 GGCGCATGAAAGGAAGGAAG 59.547 55.000 10.83 0.00 0.00 3.46
3772 7825 1.305219 CGGCGCATGAAAGGAAGGAA 61.305 55.000 10.83 0.00 0.00 3.36
3773 7826 1.745115 CGGCGCATGAAAGGAAGGA 60.745 57.895 10.83 0.00 0.00 3.36
3774 7827 1.586154 AACGGCGCATGAAAGGAAGG 61.586 55.000 10.83 0.00 0.00 3.46
3775 7828 0.179189 GAACGGCGCATGAAAGGAAG 60.179 55.000 10.83 0.00 0.00 3.46
3776 7829 0.605319 AGAACGGCGCATGAAAGGAA 60.605 50.000 10.83 0.00 0.00 3.36
3777 7830 1.003839 AGAACGGCGCATGAAAGGA 60.004 52.632 10.83 0.00 0.00 3.36
3778 7831 1.298157 TGAGAACGGCGCATGAAAGG 61.298 55.000 10.83 0.00 0.00 3.11
3779 7832 0.729116 ATGAGAACGGCGCATGAAAG 59.271 50.000 10.83 0.00 35.58 2.62
3780 7833 0.726827 GATGAGAACGGCGCATGAAA 59.273 50.000 10.83 0.00 37.13 2.69
3781 7834 1.420641 CGATGAGAACGGCGCATGAA 61.421 55.000 10.83 0.00 37.13 2.57
3782 7835 1.878069 CGATGAGAACGGCGCATGA 60.878 57.895 10.83 0.00 37.13 3.07
3783 7836 2.622629 CGATGAGAACGGCGCATG 59.377 61.111 10.83 2.89 37.13 4.06
3784 7837 2.586079 CCGATGAGAACGGCGCAT 60.586 61.111 10.83 1.24 43.74 4.73
3790 7843 1.226603 GTCCGGTCCGATGAGAACG 60.227 63.158 14.39 0.00 46.57 3.95
3791 7844 0.179134 CTGTCCGGTCCGATGAGAAC 60.179 60.000 14.39 1.69 0.00 3.01
3792 7845 1.945354 GCTGTCCGGTCCGATGAGAA 61.945 60.000 14.39 0.00 0.00 2.87
3793 7846 2.415608 GCTGTCCGGTCCGATGAGA 61.416 63.158 14.39 0.00 0.00 3.27
3794 7847 2.105128 GCTGTCCGGTCCGATGAG 59.895 66.667 14.39 5.95 0.00 2.90
3795 7848 2.678580 TGCTGTCCGGTCCGATGA 60.679 61.111 14.39 0.00 0.00 2.92
3796 7849 2.202797 CTGCTGTCCGGTCCGATG 60.203 66.667 14.39 0.00 0.00 3.84
3797 7850 2.680352 ACTGCTGTCCGGTCCGAT 60.680 61.111 14.39 0.00 0.00 4.18
3798 7851 3.680786 CACTGCTGTCCGGTCCGA 61.681 66.667 14.39 0.00 0.00 4.55
3800 7853 3.825160 TTGCACTGCTGTCCGGTCC 62.825 63.158 0.00 0.00 0.00 4.46
3801 7854 2.280797 TTGCACTGCTGTCCGGTC 60.281 61.111 0.00 0.00 0.00 4.79
3802 7855 2.281070 CTTGCACTGCTGTCCGGT 60.281 61.111 0.00 0.00 0.00 5.28
3803 7856 2.281070 ACTTGCACTGCTGTCCGG 60.281 61.111 0.00 0.00 0.00 5.14
3804 7857 1.889105 ACACTTGCACTGCTGTCCG 60.889 57.895 1.98 0.00 0.00 4.79
3805 7858 1.097547 ACACACTTGCACTGCTGTCC 61.098 55.000 1.98 0.00 0.00 4.02
3806 7859 0.028505 CACACACTTGCACTGCTGTC 59.971 55.000 1.98 0.00 0.00 3.51
3807 7860 1.996786 GCACACACTTGCACTGCTGT 61.997 55.000 1.98 0.00 42.49 4.40
3808 7861 1.298863 GCACACACTTGCACTGCTG 60.299 57.895 1.98 0.00 42.49 4.41
3809 7862 1.033746 AAGCACACACTTGCACTGCT 61.034 50.000 1.98 0.00 45.62 4.24
3810 7863 0.868602 CAAGCACACACTTGCACTGC 60.869 55.000 0.00 0.00 45.62 4.40
3811 7864 3.245443 CAAGCACACACTTGCACTG 57.755 52.632 0.00 0.00 45.62 3.66
3817 7870 1.133025 GCTCACAACAAGCACACACTT 59.867 47.619 0.00 0.00 39.61 3.16
3818 7871 0.734889 GCTCACAACAAGCACACACT 59.265 50.000 0.00 0.00 39.61 3.55
3819 7872 0.248621 GGCTCACAACAAGCACACAC 60.249 55.000 0.00 0.00 41.66 3.82
3820 7873 1.713937 CGGCTCACAACAAGCACACA 61.714 55.000 0.00 0.00 41.66 3.72
3821 7874 1.009675 CGGCTCACAACAAGCACAC 60.010 57.895 0.00 0.00 41.66 3.82
3822 7875 2.833533 GCGGCTCACAACAAGCACA 61.834 57.895 0.00 0.00 41.66 4.57
3823 7876 2.050985 GCGGCTCACAACAAGCAC 60.051 61.111 0.00 0.00 41.66 4.40
3824 7877 2.203195 AGCGGCTCACAACAAGCA 60.203 55.556 0.00 0.00 41.66 3.91
3825 7878 2.253452 CAGCGGCTCACAACAAGC 59.747 61.111 0.00 0.00 39.09 4.01
3826 7879 2.253452 GCAGCGGCTCACAACAAG 59.747 61.111 0.00 0.00 36.96 3.16
3837 7890 2.356313 AACGACACAGAGCAGCGG 60.356 61.111 0.00 0.00 0.00 5.52
3838 7891 1.951130 ACAACGACACAGAGCAGCG 60.951 57.895 0.00 0.00 0.00 5.18
3839 7892 1.154205 ACACAACGACACAGAGCAGC 61.154 55.000 0.00 0.00 0.00 5.25
3840 7893 1.004610 CAACACAACGACACAGAGCAG 60.005 52.381 0.00 0.00 0.00 4.24
3841 7894 1.006086 CAACACAACGACACAGAGCA 58.994 50.000 0.00 0.00 0.00 4.26
3842 7895 1.006832 ACAACACAACGACACAGAGC 58.993 50.000 0.00 0.00 0.00 4.09
3843 7896 1.267532 GCACAACACAACGACACAGAG 60.268 52.381 0.00 0.00 0.00 3.35
3844 7897 0.724549 GCACAACACAACGACACAGA 59.275 50.000 0.00 0.00 0.00 3.41
3845 7898 0.586256 CGCACAACACAACGACACAG 60.586 55.000 0.00 0.00 0.00 3.66
3846 7899 1.421877 CGCACAACACAACGACACA 59.578 52.632 0.00 0.00 0.00 3.72
3847 7900 1.932564 GCGCACAACACAACGACAC 60.933 57.895 0.30 0.00 0.00 3.67
3848 7901 2.401592 GCGCACAACACAACGACA 59.598 55.556 0.30 0.00 0.00 4.35
3849 7902 2.351888 GGCGCACAACACAACGAC 60.352 61.111 10.83 0.00 0.00 4.34
3850 7903 2.512745 AGGCGCACAACACAACGA 60.513 55.556 10.83 0.00 0.00 3.85
3851 7904 2.352229 CAGGCGCACAACACAACG 60.352 61.111 10.83 0.00 0.00 4.10
3852 7905 2.655044 GCAGGCGCACAACACAAC 60.655 61.111 10.83 0.00 38.36 3.32
3853 7906 4.249020 CGCAGGCGCACAACACAA 62.249 61.111 10.83 0.00 38.40 3.33
3877 7930 4.659172 TTTGCCTCTGCCGGTGGG 62.659 66.667 1.90 1.27 36.33 4.61
3878 7931 3.058160 CTTTGCCTCTGCCGGTGG 61.058 66.667 1.90 1.65 36.33 4.61
3879 7932 2.032528 TCTTTGCCTCTGCCGGTG 59.967 61.111 1.90 0.00 36.33 4.94
3880 7933 2.056906 AACTCTTTGCCTCTGCCGGT 62.057 55.000 1.90 0.00 36.33 5.28
3881 7934 0.890996 AAACTCTTTGCCTCTGCCGG 60.891 55.000 0.00 0.00 36.33 6.13
3882 7935 0.239347 CAAACTCTTTGCCTCTGCCG 59.761 55.000 0.00 0.00 36.33 5.69
3883 7936 0.600057 CCAAACTCTTTGCCTCTGCC 59.400 55.000 0.00 0.00 39.31 4.85
3884 7937 0.600057 CCCAAACTCTTTGCCTCTGC 59.400 55.000 0.00 0.00 39.31 4.26
3885 7938 0.600057 GCCCAAACTCTTTGCCTCTG 59.400 55.000 0.00 0.00 39.31 3.35
3886 7939 0.540597 GGCCCAAACTCTTTGCCTCT 60.541 55.000 0.00 0.00 39.31 3.69
3887 7940 1.536073 GGGCCCAAACTCTTTGCCTC 61.536 60.000 19.95 0.00 39.31 4.70
3888 7941 1.533994 GGGCCCAAACTCTTTGCCT 60.534 57.895 19.95 0.00 39.31 4.75
3889 7942 2.583441 GGGGCCCAAACTCTTTGCC 61.583 63.158 26.86 0.00 39.31 4.52
3890 7943 2.583441 GGGGGCCCAAACTCTTTGC 61.583 63.158 26.86 0.59 39.31 3.68
3891 7944 2.275380 CGGGGGCCCAAACTCTTTG 61.275 63.158 26.86 0.00 40.32 2.77
3892 7945 2.117423 CGGGGGCCCAAACTCTTT 59.883 61.111 26.86 0.00 35.37 2.52
3893 7946 3.979497 CCGGGGGCCCAAACTCTT 61.979 66.667 26.86 0.00 35.37 2.85
3931 7984 0.386478 GAACAAAAGCGGCAGAGCAG 60.386 55.000 1.45 0.00 40.15 4.24
3932 7985 0.819259 AGAACAAAAGCGGCAGAGCA 60.819 50.000 1.45 0.00 40.15 4.26
3933 7986 1.129437 CTAGAACAAAAGCGGCAGAGC 59.871 52.381 1.45 0.00 37.41 4.09
3934 7987 1.129437 GCTAGAACAAAAGCGGCAGAG 59.871 52.381 1.45 0.00 0.00 3.35
3935 7988 1.156736 GCTAGAACAAAAGCGGCAGA 58.843 50.000 1.45 0.00 0.00 4.26
3936 7989 3.683581 GCTAGAACAAAAGCGGCAG 57.316 52.632 1.45 0.00 0.00 4.85
3941 7994 1.134694 CGGCCGCTAGAACAAAAGC 59.865 57.895 14.67 0.00 35.33 3.51
3942 7995 1.153353 TTCGGCCGCTAGAACAAAAG 58.847 50.000 23.51 0.00 0.00 2.27
3943 7996 1.816074 ATTCGGCCGCTAGAACAAAA 58.184 45.000 23.51 6.40 0.00 2.44
3944 7997 2.546778 CTATTCGGCCGCTAGAACAAA 58.453 47.619 23.51 7.27 0.00 2.83
3945 7998 1.805120 GCTATTCGGCCGCTAGAACAA 60.805 52.381 28.27 15.34 0.00 2.83
3946 7999 0.249322 GCTATTCGGCCGCTAGAACA 60.249 55.000 28.27 7.48 0.00 3.18
3947 8000 1.276145 CGCTATTCGGCCGCTAGAAC 61.276 60.000 28.27 15.83 33.78 3.01
3948 8001 1.007734 CGCTATTCGGCCGCTAGAA 60.008 57.895 28.27 16.97 33.78 2.10
3949 8002 2.643272 CGCTATTCGGCCGCTAGA 59.357 61.111 28.27 14.40 33.78 2.43
3950 8003 3.106407 GCGCTATTCGGCCGCTAG 61.106 66.667 23.51 23.10 38.94 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.